HEADER VIRAL PROTEIN 07-JUL-13 4LKH TITLE THE STRUCTURE OF HEMAGGLUTININ FROM A AVIAN-ORIGIN H7N9 INFLUENZA TITLE 2 VIRUS (A/SHANGHAI/1/2013) IN COMPLEX WITH HUMAN RECEPTOR ANALOG TITLE 3 6'SLNLN COMPND MOL_ID: 1; COMPND 2 MOLECULE: HEMAGGLUTININ; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: HEMAGGLUTININ; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS; SOURCE 3 ORGANISM_TAXID: 11320; SOURCE 4 STRAIN: A/SHANGHAI/1/2013; SOURCE 5 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 6 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: HI5; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PFASTBAC1; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS; SOURCE 13 ORGANISM_TAXID: 11320; SOURCE 14 STRAIN: A/SHANGHAI/1/2013; SOURCE 15 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 16 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 18 EXPRESSION_SYSTEM_CELL_LINE: HI5; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PFASTBAC1 KEYWDS HOMOTRIMER, VIRUS ATTACHMENT, MEMBRANE FUSION, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR Y.SHI,W.ZHANG,F.WANG,J.QI,H.SONG,Y.WU,F.GAO,Y.ZHANG,Z.FAN,W.GONG, AUTHOR 2 D.WANG,Y.SHU,Y.WANG,J.YAN,G.F.GAO REVDAT 4 06-NOV-24 4LKH 1 REMARK REVDAT 3 08-NOV-23 4LKH 1 HETSYN REVDAT 2 29-JUL-20 4LKH 1 COMPND REMARK HETNAM LINK REVDAT 2 2 1 SITE REVDAT 1 06-NOV-13 4LKH 0 JRNL AUTH Y.SHI,W.ZHANG,F.WANG,J.QI,Y.WU,H.SONG,F.GAO,Y.BI,Y.ZHANG, JRNL AUTH 2 Z.FAN,C.QIN,H.SUN,J.LIU,J.HAYWOOD,W.LIU,W.GONG,D.WANG,Y.SHU, JRNL AUTH 3 Y.WANG,J.YAN,G.F.GAO JRNL TITL STRUCTURES AND RECEPTOR BINDING OF HEMAGGLUTININS FROM JRNL TITL 2 HUMAN-INFECTING H7N9 INFLUENZA VIRUSES JRNL REF SCIENCE V. 342 243 2013 JRNL REFN ISSN 0036-8075 JRNL PMID 24009358 JRNL DOI 10.1126/SCIENCE.1242917 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.3_928) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.69 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 14301 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.219 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 716 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.6937 - 5.2981 1.00 2830 142 0.2181 0.2336 REMARK 3 2 5.2981 - 4.2061 1.00 2734 129 0.1832 0.2376 REMARK 3 3 4.2061 - 3.6746 1.00 2697 148 0.2019 0.2545 REMARK 3 4 3.6746 - 3.3387 1.00 2678 145 0.2476 0.2855 REMARK 3 5 3.3387 - 3.0995 0.99 2646 152 0.2981 0.3469 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.86 REMARK 3 K_SOL : 0.29 REMARK 3 B_SOL : 51.87 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.280 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.160 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 80.04 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 108.9 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 11.72910 REMARK 3 B22 (A**2) : 11.72910 REMARK 3 B33 (A**2) : -23.45820 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 3934 REMARK 3 ANGLE : 0.761 5306 REMARK 3 CHIRALITY : 0.049 577 REMARK 3 PLANARITY : 0.002 698 REMARK 3 DIHEDRAL : 16.192 1450 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 11.1634 11.7624 57.4185 REMARK 3 T TENSOR REMARK 3 T11: 0.4317 T22: 0.4206 REMARK 3 T33: 0.5723 T12: -0.0216 REMARK 3 T13: -0.0426 T23: -0.0056 REMARK 3 L TENSOR REMARK 3 L11: 1.1357 L22: 0.9940 REMARK 3 L33: 0.1174 L12: 0.1626 REMARK 3 L13: -0.0582 L23: -0.1667 REMARK 3 S TENSOR REMARK 3 S11: 0.0436 S12: 0.0836 S13: 0.1991 REMARK 3 S21: 0.0385 S22: 0.0356 S23: -0.0183 REMARK 3 S31: -0.1972 S32: 0.0100 S33: 0.0000 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4LKH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 26-JUL-13. REMARK 100 THE DEPOSITION ID IS D_1000080742. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14311 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.099 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.21 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 4DJ6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.34 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM CITRATE TRIBASIC, REMARK 280 20%(W/V) POLYETHYLENE GLYCOL 3350, PH 7.0, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z REMARK 290 6555 -X,-X+Y,-Z REMARK 290 7555 X+2/3,Y+1/3,Z+1/3 REMARK 290 8555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 9555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 10555 Y+2/3,X+1/3,-Z+1/3 REMARK 290 11555 X-Y+2/3,-Y+1/3,-Z+1/3 REMARK 290 12555 -X+2/3,-X+Y+1/3,-Z+1/3 REMARK 290 13555 X+1/3,Y+2/3,Z+2/3 REMARK 290 14555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 15555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 16555 Y+1/3,X+2/3,-Z+2/3 REMARK 290 17555 X-Y+1/3,-Y+2/3,-Z+2/3 REMARK 290 18555 -X+1/3,-X+Y+2/3,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 58.19900 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 33.60121 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 98.21200 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 58.19900 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 33.60121 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 98.21200 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 58.19900 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 33.60121 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 98.21200 REMARK 290 SMTRY1 10 -0.500000 0.866025 0.000000 58.19900 REMARK 290 SMTRY2 10 0.866025 0.500000 0.000000 33.60121 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 98.21200 REMARK 290 SMTRY1 11 1.000000 0.000000 0.000000 58.19900 REMARK 290 SMTRY2 11 0.000000 -1.000000 0.000000 33.60121 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 98.21200 REMARK 290 SMTRY1 12 -0.500000 -0.866025 0.000000 58.19900 REMARK 290 SMTRY2 12 -0.866025 0.500000 0.000000 33.60121 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 98.21200 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 67.20242 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 196.42400 REMARK 290 SMTRY1 14 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 14 0.866025 -0.500000 0.000000 67.20242 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 196.42400 REMARK 290 SMTRY1 15 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 15 -0.866025 -0.500000 0.000000 67.20242 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 196.42400 REMARK 290 SMTRY1 16 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 16 0.866025 0.500000 0.000000 67.20242 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 196.42400 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 17 0.000000 -1.000000 0.000000 67.20242 REMARK 290 SMTRY3 17 0.000000 0.000000 -1.000000 196.42400 REMARK 290 SMTRY1 18 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 18 -0.866025 0.500000 0.000000 67.20242 REMARK 290 SMTRY3 18 0.000000 0.000000 -1.000000 196.42400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 35770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 57290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -145.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 39 28.59 -73.46 REMARK 500 CYS A 42 99.75 -66.06 REMARK 500 GLU A 71 39.30 -140.41 REMARK 500 CYS A 87 -62.94 -108.43 REMARK 500 THR A 122 -42.12 -136.22 REMARK 500 ASN A 123 35.65 -70.93 REMARK 500 ARG A 131 -74.13 -129.59 REMARK 500 SER A 132 58.92 -107.05 REMARK 500 ASP A 148 129.13 -33.44 REMARK 500 ASN A 149 -5.59 65.67 REMARK 500 GLN A 154 97.76 -50.28 REMARK 500 SER A 197 -154.55 -174.12 REMARK 500 SER A 198 -73.26 -70.74 REMARK 500 GLN A 201 105.37 -169.58 REMARK 500 ASN A 231 -19.32 68.21 REMARK 500 ASN A 239 25.21 -151.34 REMARK 500 ILE A 288 -56.77 -126.78 REMARK 500 ALA B 326 -81.92 -89.25 REMARK 500 ILE B 331 89.49 -68.38 REMARK 500 ASN B 349 -137.43 -134.62 REMARK 500 THR B 355 103.60 -162.47 REMARK 500 ARG B 448 -76.52 49.09 REMARK 500 THR B 456 34.16 -90.65 REMARK 500 PHE B 462 35.56 -97.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4LKG RELATED DB: PDB REMARK 900 RELATED ID: 4LKI RELATED DB: PDB REMARK 900 RELATED ID: 4LKJ RELATED DB: PDB REMARK 900 RELATED ID: 4LKK RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE SEQUENCE DATABASE REFERENCES FOR THIS PROTEIN WHICH DERIVED REMARK 999 FROM STRAIN A/SHANGHAI/1/2013 DOES NOT CURRENTLY EXIST. DBREF 4LKH A 1 316 PDB 4LKH 4LKH 1 316 DBREF 4LKH B 322 491 PDB 4LKH 4LKH 322 491 SEQRES 1 A 316 ASP LYS ILE CYS LEU GLY HIS HIS ALA VAL SER ASN GLY SEQRES 2 A 316 THR LYS VAL ASN THR LEU THR GLU ARG GLY VAL GLU VAL SEQRES 3 A 316 VAL ASN ALA THR GLU THR VAL GLU ARG THR ASN ILE PRO SEQRES 4 A 316 ARG ILE CYS SER LYS GLY LYS ARG THR VAL ASP LEU GLY SEQRES 5 A 316 GLN CYS GLY LEU LEU GLY THR ILE THR GLY PRO PRO GLN SEQRES 6 A 316 CYS ASP GLN PHE LEU GLU PHE SER ALA ASP LEU ILE ILE SEQRES 7 A 316 GLU ARG ARG GLU GLY SER ASP VAL CYS TYR PRO GLY LYS SEQRES 8 A 316 PHE VAL ASN GLU GLU ALA LEU ARG GLN ILE LEU ARG GLU SEQRES 9 A 316 SER GLY GLY ILE ASP LYS GLU ALA MET GLY PHE THR TYR SEQRES 10 A 316 SER GLY ILE ARG THR ASN GLY ALA THR SER SER CYS ARG SEQRES 11 A 316 ARG SER GLY SER SER PHE TYR ALA GLU MET LYS TRP LEU SEQRES 12 A 316 LEU SER ASN THR ASP ASN ALA ALA PHE PRO GLN MET THR SEQRES 13 A 316 LYS SER TYR LYS ASN THR ARG LYS ASN PRO ALA LEU ILE SEQRES 14 A 316 VAL TRP GLY ILE HIS HIS SER GLY SER THR ALA GLU GLN SEQRES 15 A 316 THR LYS LEU TYR GLY SER GLY ASN LYS LEU VAL THR VAL SEQRES 16 A 316 GLY SER SER ASN TYR GLN GLN SER PHE VAL PRO SER PRO SEQRES 17 A 316 GLY ALA ARG THR GLN VAL ASN GLY GLN SER GLY ARG ILE SEQRES 18 A 316 ASP PHE HIS TRP LEU MET LEU ASN PRO ASN ASP THR VAL SEQRES 19 A 316 THR PHE SER PHE ASN GLY ALA PHE ILE ALA PRO ASP ARG SEQRES 20 A 316 ALA SER PHE LEU ARG GLY LYS SER MET GLY ILE GLN SER SEQRES 21 A 316 GLY VAL GLN VAL ASP ALA ASP CYS GLU GLY ASP CYS TYR SEQRES 22 A 316 TYR SER GLY GLY THR ILE ILE SER ASN LEU PRO PHE GLN SEQRES 23 A 316 ASN ILE ASP SER ARG ALA VAL GLY LYS CYS PRO ARG TYR SEQRES 24 A 316 VAL LYS GLN ARG SER LEU LEU LEU ALA THR GLY MET LYS SEQRES 25 A 316 ASN VAL PRO GLU SEQRES 1 B 170 GLY LEU PHE GLY ALA ILE ALA GLY PHE ILE GLU ASN GLY SEQRES 2 B 170 TRP GLU GLY LEU ILE ASP GLY TRP TYR GLY PHE ARG HIS SEQRES 3 B 170 GLN ASN ALA GLN GLY GLU GLY THR ALA ALA ASP TYR LYS SEQRES 4 B 170 SER THR GLN SER ALA ILE ASP GLN ILE THR GLY LYS LEU SEQRES 5 B 170 ASN ARG LEU ILE GLU LYS THR ASN GLN GLN PHE GLU LEU SEQRES 6 B 170 ILE ASP ASN GLU PHE THR GLU VAL GLU LYS GLN ILE GLY SEQRES 7 B 170 ASN VAL ILE ASN TRP THR ARG ASP SER ILE THR GLU VAL SEQRES 8 B 170 TRP SER TYR ASN ALA GLU LEU LEU VAL ALA MET GLU ASN SEQRES 9 B 170 GLN HIS THR ILE ASP LEU ALA ASP SER GLU MET ASP LYS SEQRES 10 B 170 LEU TYR GLU ARG VAL LYS ARG GLN LEU ARG GLU ASN ALA SEQRES 11 B 170 GLU GLU ASP GLY THR GLY CYS PHE GLU ILE PHE HIS LYS SEQRES 12 B 170 CYS ASP ASP ASP CYS MET ALA SER ILE ARG ASN ASN THR SEQRES 13 B 170 TYR ASP HIS SER LYS TYR ARG GLU GLU ALA MET GLN ASN SEQRES 14 B 170 ARG MODRES 4LKH ASN A 231 ASN GLYCOSYLATION SITE MODRES 4LKH ASN A 28 ASN GLYCOSYLATION SITE MODRES 4LKH ASN B 403 ASN GLYCOSYLATION SITE HET NAG A 601 14 HET NAG A 602 14 HET SIA A 603 21 HET NAG B 601 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM SIA N-ACETYL-ALPHA-NEURAMINIC ACID HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN SIA N-ACETYLNEURAMINIC ACID; SIALIC ACID; ALPHA-SIALIC HETSYN 2 SIA ACID; O-SIALIC ACID FORMUL 3 NAG 3(C8 H15 N O6) FORMUL 5 SIA C11 H19 N O9 HELIX 1 1 LEU A 57 GLY A 62 1 6 HELIX 2 2 PRO A 63 ASP A 67 5 5 HELIX 3 3 ASN A 94 GLU A 104 1 11 HELIX 4 4 SER A 178 GLY A 187 1 10 HELIX 5 5 ASP B 358 ILE B 377 1 20 HELIX 6 6 GLU B 395 ARG B 448 1 54 HELIX 7 7 ASP B 466 ASN B 475 1 10 HELIX 8 8 TYR B 483 ASN B 490 1 8 SHEET 1 A 5 GLU B 353 ALA B 357 0 SHEET 2 A 5 TYR B 343 GLN B 348 -1 N HIS B 347 O GLY B 354 SHEET 3 A 5 LYS A 2 HIS A 7 -1 N CYS A 4 O ARG B 346 SHEET 4 A 5 CYS B 458 ILE B 461 -1 O PHE B 459 N ILE A 3 SHEET 5 A 5 ALA B 451 GLU B 453 -1 N GLU B 452 O GLU B 460 SHEET 1 B 2 THR A 14 ASN A 17 0 SHEET 2 B 2 ARG A 22 VAL A 26 -1 O VAL A 26 N THR A 14 SHEET 1 C 2 ALA A 29 GLU A 31 0 SHEET 2 C 2 LEU A 306 ALA A 308 -1 O LEU A 307 N THR A 30 SHEET 1 D 3 VAL A 33 GLU A 34 0 SHEET 2 D 3 PHE A 285 GLN A 286 1 O PHE A 285 N GLU A 34 SHEET 3 D 3 ARG A 298 TYR A 299 1 O ARG A 298 N GLN A 286 SHEET 1 E 2 ILE A 41 CYS A 42 0 SHEET 2 E 2 VAL A 264 ASP A 265 1 O ASP A 265 N ILE A 41 SHEET 1 F 3 THR A 48 ASP A 50 0 SHEET 2 F 3 LEU A 76 GLU A 79 1 O ILE A 78 N VAL A 49 SHEET 3 F 3 MET A 256 GLN A 259 1 O MET A 256 N ILE A 77 SHEET 1 G 5 GLY A 90 PHE A 92 0 SHEET 2 G 5 ARG A 220 LEU A 228 1 O PHE A 223 N LYS A 91 SHEET 3 G 5 ALA A 167 HIS A 175 -1 N ILE A 173 O ASP A 222 SHEET 4 G 5 PHE A 242 PRO A 245 -1 O ILE A 243 N GLY A 172 SHEET 5 G 5 MET A 140 TRP A 142 -1 N LYS A 141 O ALA A 244 SHEET 1 H 2 ILE A 108 ALA A 112 0 SHEET 2 H 2 ARG A 247 LEU A 251 -1 O ALA A 248 N GLU A 111 SHEET 1 I 2 THR A 126 ARG A 130 0 SHEET 2 I 2 SER A 134 SER A 135 -1 O SER A 135 N THR A 126 SHEET 1 J 4 MET A 155 LYS A 160 0 SHEET 2 J 4 THR A 233 PHE A 238 -1 O VAL A 234 N TYR A 159 SHEET 3 J 4 VAL A 193 GLY A 196 -1 N THR A 194 O SER A 237 SHEET 4 J 4 GLN A 201 PHE A 204 -1 O PHE A 204 N VAL A 193 SHEET 1 K 3 GLY A 277 ILE A 279 0 SHEET 2 K 3 CYS A 272 TYR A 274 -1 N CYS A 272 O ILE A 279 SHEET 3 K 3 VAL A 293 GLY A 294 -1 O VAL A 293 N TYR A 273 SSBOND 1 CYS A 4 CYS B 458 1555 1555 2.03 SSBOND 2 CYS A 42 CYS A 268 1555 1555 2.05 SSBOND 3 CYS A 54 CYS A 66 1555 1555 2.05 SSBOND 4 CYS A 87 CYS A 129 1555 1555 2.04 SSBOND 5 CYS A 272 CYS A 296 1555 1555 2.05 SSBOND 6 CYS B 465 CYS B 469 1555 1555 2.03 LINK ND2 ASN A 28 C1 NAG A 601 1555 1555 1.45 LINK ND2 ASN A 231 C1 NAG A 602 1555 1555 1.44 LINK ND2 ASN B 403 C1 NAG B 601 1555 1555 1.45 CRYST1 116.398 116.398 294.636 90.00 90.00 120.00 H 3 2 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008591 0.004960 0.000000 0.00000 SCALE2 0.000000 0.009920 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003394 0.00000