HEADER TRANSFERASE/TRANSFERASE INHIBITOR 08-JUL-13 4LKM TITLE CRYSTAL STRUCTURE OF PLK1 POLO-BOX DOMAIN IN COMPLEX WITH PL-74 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE PLK1; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: POLO-BOX DOMAIN, UNP RESIDUES 371-601; COMPND 5 SYNONYM: POLO-LIKE KINASE 1,PLK-1,SERINE/THREONINE-PROTEIN KINASE 13, COMPND 6 STPK13; COMPND 7 EC: 2.7.11.21; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: PL-74; COMPND 11 CHAIN: B, D; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PLK1, PLK; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 14 ORGANISM_TAXID: 32630; SOURCE 15 OTHER_DETAILS: SOLID PHASE SYNTHESIS KEYWDS POLO-BOX DOMAIN, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR W.C.LEE,J.H.SONG,H.Y.KIM REVDAT 3 15-NOV-23 4LKM 1 REMARK LINK ATOM REVDAT 2 12-JUL-23 4LKM 1 COMPND SOURCE REMARK DBREF REVDAT 2 2 1 SEQRES HET HETNAM HETSYN REVDAT 2 3 1 FORMUL SHEET LINK SITE REVDAT 2 4 1 ATOM REVDAT 1 11-DEC-13 4LKM 0 JRNL AUTH R.N.MURUGAN,M.AHN,W.C.LEE,H.Y.KIM,J.H.SONG,C.CHEONG,E.HWANG, JRNL AUTH 2 J.H.SEO,S.Y.SHIN,S.H.CHOI,J.E.PARK,J.K.BANG JRNL TITL EXPLORING THE BINDING NATURE OF PYRROLIDINE POCKET-DEPENDENT JRNL TITL 2 INTERACTIONS IN THE POLO-BOX DOMAIN OF POLO-LIKE KINASE 1 JRNL REF PLOS ONE V. 8 80043 2013 JRNL REFN ESSN 1932-6203 JRNL PMID 24223211 JRNL DOI 10.1371/JOURNAL.PONE.0080043 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.3 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.63 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 4168546.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 33760 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.202 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1676 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.13 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.40 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 5177 REMARK 3 BIN R VALUE (WORKING SET) : 0.2220 REMARK 3 BIN FREE R VALUE : 0.2510 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.70 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 254 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.016 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3684 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 22 REMARK 3 SOLVENT ATOMS : 202 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.38 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.69000 REMARK 3 B22 (A**2) : -5.90000 REMARK 3 B33 (A**2) : 11.58000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.22 REMARK 3 ESD FROM SIGMAA (A) : 0.13 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.26 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.18 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 22.60 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.810 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.38 REMARK 3 BSOL : 48.55 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : DNA-RNA_REP.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : P74.PARAM REMARK 3 PARAMETER FILE 6 : GOL.PARAM REMARK 3 PARAMETER FILE 7 : TPO.PARAM REMARK 3 PARAMETER FILE 8 : CAPPING.PARAM REMARK 3 PARAMETER FILE 9 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : DNA-RNA.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : P74.TOP REMARK 3 TOPOLOGY FILE 6 : TPO.TOP REMARK 3 TOPOLOGY FILE 7 : CAPPING.TOP REMARK 3 TOPOLOGY FILE 8 : GOL.TOP REMARK 3 TOPOLOGY FILE 9 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED REMARK 4 REMARK 4 4LKM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 20-AUG-13. REMARK 100 THE DEPOSITION ID IS D_1000080747. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JUN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PHOTON FACTORY REMARK 200 BEAMLINE : BL-1A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9800 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33797 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.400 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : 0.34600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M SODIUM CITRATE, 500MM AMMONIUM REMARK 280 SULFATE, PH 4.0, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.86000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 75.86000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 39.80000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 41.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 39.80000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 41.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 75.86000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 39.80000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 41.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 75.86000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 39.80000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 41.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 11270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10560 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -24.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 889 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 503 REMARK 465 GLU A 504 REMARK 465 LEU A 505 REMARK 465 ALA A 506 REMARK 465 ARG A 507 REMARK 465 THR C 498 REMARK 465 PRO C 499 REMARK 465 ARG C 500 REMARK 465 GLU C 501 REMARK 465 GLY C 502 REMARK 465 ASP C 503 REMARK 465 GLU C 504 REMARK 465 LEU C 505 REMARK 465 SER C 595 REMARK 465 ALA C 596 REMARK 465 SER C 597 REMARK 465 ASN C 598 REMARK 465 ARG C 599 REMARK 465 LEU C 600 REMARK 465 LYS C 601 REMARK 465 5PV D -1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 388 NZ REMARK 470 ARG A 456 CZ NH1 NH2 REMARK 470 GLU A 488 CD OE1 OE2 REMARK 470 GLN A 536 OE1 NE2 REMARK 470 GLU A 575 CD OE1 OE2 REMARK 470 LYS C 388 NZ REMARK 470 GLU C 391 OE1 OE2 REMARK 470 ASP C 419 OD1 OD2 REMARK 470 LYS C 420 CE NZ REMARK 470 ARG C 456 CZ NH1 NH2 REMARK 470 GLN C 536 OE1 NE2 REMARK 470 ARG C 557 CZ NH1 NH2 REMARK 470 LYS C 574 CG CD CE NZ REMARK 470 ARG C 594 CZ NH1 NH2 REMARK 470 ACA D 0 C3 C4 C5 C6 N REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO C 469 C - N - CD ANGL. DEV. = -15.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 391 56.73 -102.45 REMARK 500 ASP A 402 87.70 -156.95 REMARK 500 LYS A 420 -35.74 -136.22 REMARK 500 ASN A 430 -0.59 80.43 REMARK 500 ASP A 449 -42.28 -139.19 REMARK 500 PRO A 469 93.58 -67.95 REMARK 500 GLU C 391 69.55 -104.83 REMARK 500 LYS C 420 -33.02 -138.34 REMARK 500 ASN C 430 -0.39 83.21 REMARK 500 ASP C 449 -36.06 -141.21 REMARK 500 HIS C 468 -81.86 101.24 REMARK 500 ASN C 470 -81.88 72.43 REMARK 500 THR C 517 -166.17 -112.14 REMARK 500 SER D 4 -169.15 -79.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 5PV B -1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LYT B 102 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL D 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN B OF PL-74 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN D OF PL-74 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4LKL RELATED DB: PDB DBREF 4LKM A 371 601 UNP P53350 PLK1_HUMAN 371 601 DBREF 4LKM B -1 7 PDB 4LKM 4LKM -1 7 DBREF 4LKM C 371 601 UNP P53350 PLK1_HUMAN 371 601 DBREF 4LKM D -1 7 PDB 4LKM 4LKM -1 7 SEQRES 1 A 231 ASP CYS HIS LEU SER ASP MET LEU GLN GLN LEU HIS SER SEQRES 2 A 231 VAL ASN ALA SER LYS PRO SER GLU ARG GLY LEU VAL ARG SEQRES 3 A 231 GLN GLU GLU ALA GLU ASP PRO ALA CYS ILE PRO ILE PHE SEQRES 4 A 231 TRP VAL SER LYS TRP VAL ASP TYR SER ASP LYS TYR GLY SEQRES 5 A 231 LEU GLY TYR GLN LEU CYS ASP ASN SER VAL GLY VAL LEU SEQRES 6 A 231 PHE ASN ASP SER THR ARG LEU ILE LEU TYR ASN ASP GLY SEQRES 7 A 231 ASP SER LEU GLN TYR ILE GLU ARG ASP GLY THR GLU SER SEQRES 8 A 231 TYR LEU THR VAL SER SER HIS PRO ASN SER LEU MET LYS SEQRES 9 A 231 LYS ILE THR LEU LEU LYS TYR PHE ARG ASN TYR MET SER SEQRES 10 A 231 GLU HIS LEU LEU LYS ALA GLY ALA ASN ILE THR PRO ARG SEQRES 11 A 231 GLU GLY ASP GLU LEU ALA ARG LEU PRO TYR LEU ARG THR SEQRES 12 A 231 TRP PHE ARG THR ARG SER ALA ILE ILE LEU HIS LEU SER SEQRES 13 A 231 ASN GLY SER VAL GLN ILE ASN PHE PHE GLN ASP HIS THR SEQRES 14 A 231 LYS LEU ILE LEU CYS PRO LEU MET ALA ALA VAL THR TYR SEQRES 15 A 231 ILE ASP GLU LYS ARG ASP PHE ARG THR TYR ARG LEU SER SEQRES 16 A 231 LEU LEU GLU GLU TYR GLY CYS CYS LYS GLU LEU ALA SER SEQRES 17 A 231 ARG LEU ARG TYR ALA ARG THR MET VAL ASP LYS LEU LEU SEQRES 18 A 231 SER SER ARG SER ALA SER ASN ARG LEU LYS SEQRES 1 B 9 5PV ACA PRO LEU HIS SER TPO MET NH2 SEQRES 1 C 231 ASP CYS HIS LEU SER ASP MET LEU GLN GLN LEU HIS SER SEQRES 2 C 231 VAL ASN ALA SER LYS PRO SER GLU ARG GLY LEU VAL ARG SEQRES 3 C 231 GLN GLU GLU ALA GLU ASP PRO ALA CYS ILE PRO ILE PHE SEQRES 4 C 231 TRP VAL SER LYS TRP VAL ASP TYR SER ASP LYS TYR GLY SEQRES 5 C 231 LEU GLY TYR GLN LEU CYS ASP ASN SER VAL GLY VAL LEU SEQRES 6 C 231 PHE ASN ASP SER THR ARG LEU ILE LEU TYR ASN ASP GLY SEQRES 7 C 231 ASP SER LEU GLN TYR ILE GLU ARG ASP GLY THR GLU SER SEQRES 8 C 231 TYR LEU THR VAL SER SER HIS PRO ASN SER LEU MET LYS SEQRES 9 C 231 LYS ILE THR LEU LEU LYS TYR PHE ARG ASN TYR MET SER SEQRES 10 C 231 GLU HIS LEU LEU LYS ALA GLY ALA ASN ILE THR PRO ARG SEQRES 11 C 231 GLU GLY ASP GLU LEU ALA ARG LEU PRO TYR LEU ARG THR SEQRES 12 C 231 TRP PHE ARG THR ARG SER ALA ILE ILE LEU HIS LEU SER SEQRES 13 C 231 ASN GLY SER VAL GLN ILE ASN PHE PHE GLN ASP HIS THR SEQRES 14 C 231 LYS LEU ILE LEU CYS PRO LEU MET ALA ALA VAL THR TYR SEQRES 15 C 231 ILE ASP GLU LYS ARG ASP PHE ARG THR TYR ARG LEU SER SEQRES 16 C 231 LEU LEU GLU GLU TYR GLY CYS CYS LYS GLU LEU ALA SER SEQRES 17 C 231 ARG LEU ARG TYR ALA ARG THR MET VAL ASP LYS LEU LEU SEQRES 18 C 231 SER SER ARG SER ALA SER ASN ARG LEU LYS SEQRES 1 D 9 5PV ACA PRO LEU HIS SER TPO MET NH2 MODRES 4LKM TPO B 5 THR PHOSPHOTHREONINE MODRES 4LKM TPO D 5 THR PHOSPHOTHREONINE HET 5PV B -1 12 HET ACA B 0 8 HET TPO B 5 11 HET NH2 B 7 1 HET ACA D 0 3 HET TPO D 5 11 HET NH2 D 7 1 HET SO4 A 701 5 HET GOL B 201 6 HET SO4 C 701 5 HET GOL D 301 6 HETNAM 5PV 5-PHENYLVALERIC ACID HETNAM ACA 6-AMINOHEXANOIC ACID HETNAM TPO PHOSPHOTHREONINE HETNAM NH2 AMINO GROUP HETNAM SO4 SULFATE ION HETNAM GOL GLYCEROL HETSYN ACA AMINOCAPROIC ACID HETSYN TPO PHOSPHONOTHREONINE HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 5PV C11 H14 O2 FORMUL 2 ACA 2(C6 H13 N O2) FORMUL 2 TPO 2(C4 H10 N O6 P) FORMUL 2 NH2 2(H2 N) FORMUL 5 SO4 2(O4 S 2-) FORMUL 6 GOL 2(C3 H8 O3) FORMUL 9 HOH *202(H2 O) HELIX 1 1 ASP A 371 SER A 387 1 17 HELIX 2 2 ARG A 396 GLU A 401 5 6 HELIX 3 3 ASP A 402 ILE A 406 5 5 HELIX 4 4 PRO A 469 SER A 471 5 3 HELIX 5 5 LEU A 472 LEU A 490 1 19 HELIX 6 6 LEU A 564 GLY A 571 1 8 HELIX 7 7 CYS A 573 LYS A 601 1 29 HELIX 8 8 CYS C 372 SER C 387 1 16 HELIX 9 9 ARG C 396 GLU C 401 5 6 HELIX 10 10 ASP C 402 ILE C 406 5 5 HELIX 11 11 SER C 466 HIS C 468 5 3 HELIX 12 12 LEU C 472 LEU C 490 1 19 HELIX 13 13 LEU C 564 GLY C 571 1 8 HELIX 14 14 CYS C 573 ARG C 594 1 22 SHEET 1 A 7 GLU A 460 THR A 464 0 SHEET 2 A 7 SER A 450 ILE A 454 -1 N LEU A 451 O LEU A 463 SHEET 3 A 7 ARG A 441 LEU A 444 -1 N ARG A 441 O ILE A 454 SHEET 4 A 7 VAL A 432 PHE A 436 -1 N VAL A 432 O LEU A 444 SHEET 5 A 7 GLY A 422 LEU A 427 -1 N TYR A 425 O GLY A 433 SHEET 6 A 7 VAL A 411 ASP A 416 -1 N VAL A 415 O GLY A 424 SHEET 7 A 7 LEU B 2 HIS B 3 -1 O LEU B 2 N ASP A 416 SHEET 1 B 6 LEU A 511 ARG A 516 0 SHEET 2 B 6 ALA A 520 LEU A 525 -1 O ILE A 522 N PHE A 515 SHEET 3 B 6 VAL A 530 PHE A 534 -1 O GLN A 531 N LEU A 523 SHEET 4 B 6 LYS A 540 CYS A 544 -1 O LEU A 543 N VAL A 530 SHEET 5 B 6 ALA A 549 ILE A 553 -1 O ILE A 553 N LYS A 540 SHEET 6 B 6 PHE A 559 ARG A 563 -1 O ARG A 560 N TYR A 552 SHEET 1 C 7 GLU C 460 THR C 464 0 SHEET 2 C 7 SER C 450 ILE C 454 -1 N LEU C 451 O LEU C 463 SHEET 3 C 7 ARG C 441 LEU C 444 -1 N ARG C 441 O ILE C 454 SHEET 4 C 7 VAL C 432 PHE C 436 -1 N VAL C 432 O LEU C 444 SHEET 5 C 7 GLY C 422 LEU C 427 -1 N TYR C 425 O GLY C 433 SHEET 6 C 7 VAL C 411 ASP C 416 -1 N SER C 412 O GLN C 426 SHEET 7 C 7 LEU D 2 HIS D 3 -1 O LEU D 2 N ASP C 416 SHEET 1 D 6 LEU C 511 ARG C 516 0 SHEET 2 D 6 ALA C 520 LEU C 525 -1 O ILE C 522 N PHE C 515 SHEET 3 D 6 VAL C 530 PHE C 534 -1 O GLN C 531 N LEU C 523 SHEET 4 D 6 LYS C 540 CYS C 544 -1 O LEU C 543 N VAL C 530 SHEET 5 D 6 ALA C 549 ILE C 553 -1 O ILE C 553 N LYS C 540 SHEET 6 D 6 PHE C 559 ARG C 563 -1 O ARG C 560 N TYR C 552 LINK C11 5PV B -1 N ACA B 0 1555 1555 1.33 LINK C ACA B 0 N PRO B 1 1555 1555 1.35 LINK C SER B 4 N TPO B 5 1555 1555 1.34 LINK C TPO B 5 N MET B 6 1555 1555 1.33 LINK C MET B 6 N NH2 B 7 1555 1555 1.33 LINK C ACA D 0 N PRO D 1 1555 1555 1.34 LINK C SER D 4 N TPO D 5 1555 1555 1.34 LINK C TPO D 5 N MET D 6 1555 1555 1.33 LINK C MET D 6 N NH2 D 7 1555 1555 1.33 CISPEP 1 HIS C 468 PRO C 469 0 -0.51 SITE 1 AC1 4 THR A 517 ARG A 518 SER A 519 TYR A 582 SITE 1 AC2 6 TYR A 421 ARG A 599 TYR C 445 SER C 450 SITE 2 AC2 6 TYR C 462 LEU C 463 SITE 1 AC3 4 TYR A 417 TYR A 485 5PV B -1 THR C 464 SITE 1 AC4 6 PHE A 535 HIS A 538 HIS B 3 SER B 4 SITE 2 AC4 6 TPO B 5 HOH B 306 SITE 1 AC5 4 THR C 517 ARG C 518 SER C 519 TYR C 582 SITE 1 AC6 7 HOH A 814 TRP C 414 PHE C 535 HIS D 3 SITE 2 AC6 7 SER D 4 TPO D 5 HOH D 406 SITE 1 AC7 24 LYS A 413 TRP A 414 VAL A 415 ASP A 416 SITE 2 AC7 24 TYR A 417 TYR A 485 HIS A 489 LEU A 490 SITE 3 AC7 24 LEU A 491 ARG A 516 HIS A 538 LYS A 540 SITE 4 AC7 24 HOH A 843 GOL B 201 HOH B 306 HOH B 303 SITE 5 AC7 24 HOH B 305 HOH B 308 HOH B 304 HOH B 301 SITE 6 AC7 24 HOH C 809 SER C 466 HOH C 817 HOH C 834 SITE 1 AC8 24 GLU A 399 TYR A 570 HOH A 893 LYS C 413 SITE 2 AC8 24 TRP C 414 VAL C 415 ASP C 416 TYR C 417 SITE 3 AC8 24 TYR C 485 HIS C 489 LEU C 490 LEU C 491 SITE 4 AC8 24 ARG C 516 HIS C 538 LYS C 540 HOH C 848 SITE 5 AC8 24 HOH D 406 HOH D 402 HOH D 403 HOH D 404 SITE 6 AC8 24 HOH D 408 HOH D 410 HOH D 411 GOL D 301 CRYST1 79.600 82.000 151.720 90.00 90.00 90.00 C 2 2 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012563 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012195 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006591 0.00000