HEADER TRANSFERASE 08-JUL-13 4LKR TITLE CRYSTAL STRUCTURE OF DEOD-3 GENE PRODUCT FROM SHEWANELLA ONEIDENSIS TITLE 2 MR-1, NYSGRC TARGET 029437 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PURINE NUCLEOSIDE PHOSPHORYLASE DEOD-TYPE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: PNP; COMPND 5 EC: 2.4.2.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SHEWANELLA ONEIDENSIS; SOURCE 3 ORGANISM_TAXID: 211586; SOURCE 4 STRAIN: MR-1; SOURCE 5 GENE: DEOD-3, DEOD3, SO_2719; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)CODON+RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: BC-PSGX3(BC) KEYWDS STRUCTURAL GENOMICS, PROTEIN STRUCTURE INITIATIVE, NYSGRC, PSI- KEYWDS 2 BIOLOGY, NEW YORK STRUCTURAL GENOMICS RESEARCH CONSORTIUM, KEYWDS 3 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR V.N.MALASHKEVICH,J.B.BONANNO,R.BHOSLE,R.TORO,B.HILLERICH,A.GIZZI, AUTHOR 2 S.GARFORTH,A.KAR,M.K.CHAN,J.LAFLUER,H.PATEL,B.MATIKAINEN,S.CHAMALA, AUTHOR 3 S.LIM,A.CELIKGIL,G.VILLEGAS,B.EVANS,J.LOVE,A.FISER,K.KHAFIZOV, AUTHOR 4 R.SEIDEL,S.C.ALMO,NEW YORK STRUCTURAL GENOMICS RESEARCH CONSORTIUM AUTHOR 5 (NYSGRC) REVDAT 3 06-DEC-23 4LKR 1 REMARK REVDAT 2 20-SEP-23 4LKR 1 SEQADV LINK REVDAT 1 24-JUL-13 4LKR 0 JRNL AUTH V.N.MALASHKEVICH,J.B.BONANNO,R.BHOSLE,R.TORO,B.HILLERICH, JRNL AUTH 2 A.GIZZI,S.GARFORTH,A.KAR,M.K.CHAN,J.LAFLUER,H.PATEL, JRNL AUTH 3 B.MATIKAINEN,S.CHAMALA,S.LIM,A.CELIKGIL,G.VILLEGAS,B.EVANS, JRNL AUTH 4 J.LOVE,A.FISER,K.KHAFIZOV,R.SEIDEL,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF DEOD-3 GENE PRODUCT FROM SHEWANELLA JRNL TITL 2 ONEIDENSIS MR-1, NYSGRC TARGET 029437 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 14742 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 749 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 981 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.81 REMARK 3 BIN R VALUE (WORKING SET) : 0.2490 REMARK 3 BIN FREE R VALUE SET COUNT : 56 REMARK 3 BIN FREE R VALUE : 0.2790 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1782 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 116 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.56000 REMARK 3 B22 (A**2) : -2.56000 REMARK 3 B33 (A**2) : 8.30000 REMARK 3 B12 (A**2) : -2.56000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.218 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.176 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.121 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.632 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.958 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1813 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2456 ; 1.275 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 232 ; 6.068 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 81 ;30.611 ;24.568 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 274 ;16.163 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 9 ;20.132 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 281 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1370 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 931 ; 2.131 ; 5.854 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1162 ; 3.561 ;78.797 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 879 ; 3.148 ; 6.366 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 234 REMARK 3 ORIGIN FOR THE GROUP (A): 14.3082 114.6386 -12.2401 REMARK 3 T TENSOR REMARK 3 T11: 0.0442 T22: 0.0284 REMARK 3 T33: 0.0427 T12: -0.0076 REMARK 3 T13: -0.0117 T23: 0.0021 REMARK 3 L TENSOR REMARK 3 L11: 0.7224 L22: 1.3932 REMARK 3 L33: 0.2181 L12: -0.1723 REMARK 3 L13: 0.0348 L23: -0.3013 REMARK 3 S TENSOR REMARK 3 S11: 0.0184 S12: -0.0409 S13: 0.1412 REMARK 3 S21: 0.0804 S22: -0.0616 S23: -0.1686 REMARK 3 S31: -0.0698 S32: 0.0142 S33: 0.0433 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN USED IF PRESENT IN THE INPUT REMARK 4 REMARK 4 4LKR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-JUL-13. REMARK 100 THE DEPOSITION ID IS D_1000080752. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-APR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27227 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 9.000 REMARK 200 R MERGE (I) : 0.12800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 8.70 REMARK 200 R MERGE FOR SHELL (I) : 0.62100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3OCC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M SODIUM CITRATE, 20% PEG3350, PH REMARK 280 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 7555 Y,X,-Z REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z REMARK 290 10555 -Y,-X,-Z+1/2 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 26.35200 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 26.35200 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 26.35200 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 26.35200 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 26.35200 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 26.35200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: HEXAMERIC REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: HEXAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 18160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 47950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -126.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 76.82050 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 133.05701 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -76.82050 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 133.05701 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 0.500000 -0.866025 0.000000 76.82050 REMARK 350 BIOMT2 4 -0.866025 -0.500000 0.000000 133.05701 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 -26.35200 REMARK 350 BIOMT1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 -1.000000 -26.35200 REMARK 350 BIOMT1 6 0.500000 0.866025 0.000000 -76.82050 REMARK 350 BIOMT2 6 0.866025 -0.500000 0.000000 133.05701 REMARK 350 BIOMT3 6 0.000000 0.000000 -1.000000 -26.35200 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 312 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 SER A -14 REMARK 465 SER A -13 REMARK 465 GLY A -12 REMARK 465 VAL A -11 REMARK 465 ASP A -10 REMARK 465 LEU A -9 REMARK 465 GLY A -8 REMARK 465 THR A -7 REMARK 465 GLU A -6 REMARK 465 ASN A -5 REMARK 465 LEU A -4 REMARK 465 TYR A -3 REMARK 465 PHE A -2 REMARK 465 GLN A -1 REMARK 465 SER A 0 REMARK 465 MSE A 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 3 3.66 -67.02 REMARK 500 SER A 120 46.29 -98.67 REMARK 500 TYR A 160 75.21 -105.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGRC-029437 RELATED DB: TARGETTRACK DBREF 4LKR A 1 234 UNP Q8EDM4 DEOD3_SHEON 1 234 SEQADV 4LKR MSE A -21 UNP Q8EDM4 EXPRESSION TAG SEQADV 4LKR HIS A -20 UNP Q8EDM4 EXPRESSION TAG SEQADV 4LKR HIS A -19 UNP Q8EDM4 EXPRESSION TAG SEQADV 4LKR HIS A -18 UNP Q8EDM4 EXPRESSION TAG SEQADV 4LKR HIS A -17 UNP Q8EDM4 EXPRESSION TAG SEQADV 4LKR HIS A -16 UNP Q8EDM4 EXPRESSION TAG SEQADV 4LKR HIS A -15 UNP Q8EDM4 EXPRESSION TAG SEQADV 4LKR SER A -14 UNP Q8EDM4 EXPRESSION TAG SEQADV 4LKR SER A -13 UNP Q8EDM4 EXPRESSION TAG SEQADV 4LKR GLY A -12 UNP Q8EDM4 EXPRESSION TAG SEQADV 4LKR VAL A -11 UNP Q8EDM4 EXPRESSION TAG SEQADV 4LKR ASP A -10 UNP Q8EDM4 EXPRESSION TAG SEQADV 4LKR LEU A -9 UNP Q8EDM4 EXPRESSION TAG SEQADV 4LKR GLY A -8 UNP Q8EDM4 EXPRESSION TAG SEQADV 4LKR THR A -7 UNP Q8EDM4 EXPRESSION TAG SEQADV 4LKR GLU A -6 UNP Q8EDM4 EXPRESSION TAG SEQADV 4LKR ASN A -5 UNP Q8EDM4 EXPRESSION TAG SEQADV 4LKR LEU A -4 UNP Q8EDM4 EXPRESSION TAG SEQADV 4LKR TYR A -3 UNP Q8EDM4 EXPRESSION TAG SEQADV 4LKR PHE A -2 UNP Q8EDM4 EXPRESSION TAG SEQADV 4LKR GLN A -1 UNP Q8EDM4 EXPRESSION TAG SEQADV 4LKR SER A 0 UNP Q8EDM4 EXPRESSION TAG SEQRES 1 A 256 MSE HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 256 GLY THR GLU ASN LEU TYR PHE GLN SER MSE THR ALA HIS SEQRES 3 A 256 ILE ASN ALA GLN PRO THR ASP PHE ALA GLU THR VAL ILE SEQRES 4 A 256 MSE PRO GLY ASP PRO LEU ARG ALA LYS TYR ILE ALA GLU SEQRES 5 A 256 THR TYR LEU THR ASP ALA VAL GLU VAL THR ASN VAL ARG SEQRES 6 A 256 ASN MSE LEU GLY TYR THR GLY TYR TYR GLN GLY GLN ARG SEQRES 7 A 256 ILE SER VAL MSE GLY HIS GLY MSE GLY ILE SER SER MSE SEQRES 8 A 256 VAL LEU TYR GLY HIS GLU LEU ILE ASN PHE PHE GLY VAL SEQRES 9 A 256 LYS ARG ILE ILE ARG ILE GLY SER LEU GLY ALA THR GLN SEQRES 10 A 256 GLN HIS VAL GLU MSE ARG ASP VAL ILE LEU ALA GLN ALA SEQRES 11 A 256 ALA GLY THR ASP SER PRO THR ASN ALA LYS ARG SER SER SEQRES 12 A 256 GLY TYR HIS MSE ALA THR SER ALA THR PHE SER LEU LEU SEQRES 13 A 256 HIS LYS ALA TYR THR LYS ALA ASN GLU LYS GLY ILE SER SEQRES 14 A 256 VAL LYS VAL GLY ASN VAL PHE SER GLY ASP LEU TYR TYR SEQRES 15 A 256 ASP PRO ASP GLU ASP MSE ILE PRO ALA LEU GLU ARG PHE SEQRES 16 A 256 GLY VAL LEU GLY ILE ASP MSE GLU VAL ALA GLY LEU TYR SEQRES 17 A 256 GLY LEU ALA HIS GLN GLN GLY ILE GLU SER LEU ALA ILE SEQRES 18 A 256 LEU THR VAL SER ASP HIS CYS LEU THR GLY GLU GLU THR SEQRES 19 A 256 THR ALA GLN GLU ARG GLN LEU SER PHE ASN ASN MSE ILE SEQRES 20 A 256 GLU LEU ALA LEU GLU THR ALA LEU ASN MODRES 4LKR MSE A 18 MET SELENOMETHIONINE MODRES 4LKR MSE A 45 MET SELENOMETHIONINE MODRES 4LKR MSE A 60 MET SELENOMETHIONINE MODRES 4LKR MSE A 64 MET SELENOMETHIONINE MODRES 4LKR MSE A 69 MET SELENOMETHIONINE MODRES 4LKR MSE A 100 MET SELENOMETHIONINE MODRES 4LKR MSE A 125 MET SELENOMETHIONINE MODRES 4LKR MSE A 166 MET SELENOMETHIONINE MODRES 4LKR MSE A 180 MET SELENOMETHIONINE MODRES 4LKR MSE A 224 MET SELENOMETHIONINE HET MSE A 18 8 HET MSE A 45 8 HET MSE A 60 8 HET MSE A 64 8 HET MSE A 69 8 HET MSE A 100 8 HET MSE A 125 8 HET MSE A 166 8 HET MSE A 180 8 HET MSE A 224 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 2 HOH *116(H2 O) HELIX 1 1 ASP A 21 TYR A 32 1 12 HELIX 2 2 ASN A 41 MSE A 45 5 5 HELIX 3 3 GLY A 65 PHE A 80 1 16 HELIX 4 4 PRO A 114 SER A 120 1 7 HELIX 5 5 THR A 130 LYS A 144 1 15 HELIX 6 6 ASP A 165 PHE A 173 1 9 HELIX 7 7 GLU A 181 GLY A 193 1 13 HELIX 8 8 THR A 213 LEU A 233 1 21 SHEET 1 A 9 THR A 34 THR A 40 0 SHEET 2 A 9 GLY A 47 TYR A 52 -1 O TYR A 51 N THR A 34 SHEET 3 A 9 GLN A 55 MSE A 60 -1 O VAL A 59 N TYR A 48 SHEET 4 A 9 THR A 15 MSE A 18 1 N ILE A 17 O SER A 58 SHEET 5 A 9 ARG A 84 ALA A 93 1 O ILE A 86 N MSE A 18 SHEET 6 A 9 GLY A 177 ASP A 179 -1 O ILE A 178 N GLY A 92 SHEET 7 A 9 VAL A 148 SER A 155 1 N PHE A 154 O ASP A 179 SHEET 8 A 9 VAL A 103 THR A 111 1 N LEU A 105 O LYS A 149 SHEET 9 A 9 THR A 127 SER A 128 -1 O THR A 127 N ALA A 109 SHEET 1 B 8 THR A 34 THR A 40 0 SHEET 2 B 8 GLY A 47 TYR A 52 -1 O TYR A 51 N THR A 34 SHEET 3 B 8 GLN A 55 MSE A 60 -1 O VAL A 59 N TYR A 48 SHEET 4 B 8 THR A 15 MSE A 18 1 N ILE A 17 O SER A 58 SHEET 5 B 8 ARG A 84 ALA A 93 1 O ILE A 86 N MSE A 18 SHEET 6 B 8 GLU A 195 HIS A 205 1 O ASP A 204 N ALA A 93 SHEET 7 B 8 VAL A 103 THR A 111 -1 N ILE A 104 O LEU A 200 SHEET 8 B 8 THR A 127 SER A 128 -1 O THR A 127 N ALA A 109 LINK C ILE A 17 N MSE A 18 1555 1555 1.33 LINK C MSE A 18 N PRO A 19 1555 1555 1.34 LINK C ASN A 44 N MSE A 45 1555 1555 1.33 LINK C MSE A 45 N LEU A 46 1555 1555 1.33 LINK C VAL A 59 N MSE A 60 1555 1555 1.33 LINK C MSE A 60 N GLY A 61 1555 1555 1.34 LINK C GLY A 63 N MSE A 64 1555 1555 1.32 LINK C MSE A 64 N GLY A 65 1555 1555 1.33 LINK C SER A 68 N MSE A 69 1555 1555 1.33 LINK C MSE A 69 N VAL A 70 1555 1555 1.34 LINK C GLU A 99 N MSE A 100 1555 1555 1.33 LINK C MSE A 100 N ARG A 101 1555 1555 1.33 LINK C HIS A 124 N MSE A 125 1555 1555 1.33 LINK C MSE A 125 N ALA A 126 1555 1555 1.33 LINK C ASP A 165 N MSE A 166 1555 1555 1.33 LINK C MSE A 166 N ILE A 167 1555 1555 1.33 LINK C ASP A 179 N MSE A 180 1555 1555 1.33 LINK C MSE A 180 N GLU A 181 1555 1555 1.34 LINK C ASN A 223 N MSE A 224 1555 1555 1.33 LINK C MSE A 224 N ILE A 225 1555 1555 1.34 CRYST1 153.641 153.641 52.704 90.00 90.00 120.00 P 63 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006509 0.003758 0.000000 0.00000 SCALE2 0.000000 0.007516 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018974 0.00000