HEADER ANTITUMOR PROTEIN/PROTEIN BINDING 09-JUL-13 4LL4 TITLE THE STRUCTURE OF THE TRX AND TXNIP COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOREDOXIN-INTERACTING PROTEIN; COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: UNP RESIDUES 3-317; COMPND 5 SYNONYM: THIOREDOXIN-BINDING PROTEIN 2, VITAMIN D3 UP-REGULATED COMPND 6 PROTEIN 1; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: THIOREDOXIN; COMPND 11 CHAIN: B, D; COMPND 12 SYNONYM: TRX, ATL-DERIVED FACTOR, ADF, SURFACE-ASSOCIATED SULPHYDRYL COMPND 13 PROTEIN, SASP; COMPND 14 ENGINEERED: YES; COMPND 15 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TXNIP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 GENE: TRX; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ARRESTIN-LIKE DOMAIN, ANTITUMOR PROTEIN-PROTEIN BINDING COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.HWANG,M.H.KIM REVDAT 2 08-NOV-23 4LL4 1 SEQADV REVDAT 1 05-FEB-14 4LL4 0 JRNL AUTH J.HWANG,H.W.SUH,Y.H.JEON,E.HWANG,L.T.NGUYEN,J.YEOM,S.G.LEE, JRNL AUTH 2 C.LEE,K.J.KIM,B.S.KANG,J.O.JEONG,T.K.OH,I.CHOI,J.O.LEE, JRNL AUTH 3 M.H.KIM JRNL TITL THE STRUCTURAL BASIS FOR THE NEGATIVE REGULATION OF JRNL TITL 2 THIOREDOXIN BY THIOREDOXIN-INTERACTING PROTEIN JRNL REF NAT COMMUN V. 5 2958 2014 JRNL REFN ESSN 2041-1723 JRNL PMID 24389582 JRNL DOI 10.1038/NCOMMS3958 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 22957 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.201 REMARK 3 R VALUE (WORKING SET) : 0.196 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.800 REMARK 3 FREE R VALUE TEST SET COUNT : 1942 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1568 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.89 REMARK 3 BIN R VALUE (WORKING SET) : 0.2530 REMARK 3 BIN FREE R VALUE SET COUNT : 139 REMARK 3 BIN FREE R VALUE : 0.3480 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6011 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 59 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.59 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.63000 REMARK 3 B22 (A**2) : 3.94000 REMARK 3 B33 (A**2) : -2.37000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.91000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.378 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.275 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 28.731 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.946 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.905 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6125 ; 0.022 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8250 ; 2.148 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 760 ; 8.426 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 259 ;37.838 ;24.440 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1135 ;22.704 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ;19.359 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 926 ; 0.134 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4504 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2664 ; 0.268 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4090 ; 0.331 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 243 ; 0.189 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 69 ; 0.274 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 8 ; 0.155 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3896 ; 1.252 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6168 ; 1.865 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2498 ; 2.866 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2082 ; 4.375 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 7 A 298 REMARK 3 ORIGIN FOR THE GROUP (A): 10.8635 -3.8254 41.4633 REMARK 3 T TENSOR REMARK 3 T11: 0.0355 T22: 0.0077 REMARK 3 T33: -0.0196 T12: 0.0766 REMARK 3 T13: 0.0353 T23: -0.0359 REMARK 3 L TENSOR REMARK 3 L11: 1.3745 L22: 0.1970 REMARK 3 L33: 1.6361 L12: -0.3932 REMARK 3 L13: 1.4967 L23: -0.4512 REMARK 3 S TENSOR REMARK 3 S11: -0.1291 S12: -0.1393 S13: 0.0051 REMARK 3 S21: 0.0486 S22: 0.0761 S23: -0.0456 REMARK 3 S31: -0.1728 S32: -0.0707 S33: 0.0530 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 105 REMARK 3 ORIGIN FOR THE GROUP (A): -27.8363 -1.6982 6.4891 REMARK 3 T TENSOR REMARK 3 T11: -0.1467 T22: 0.0588 REMARK 3 T33: -0.0493 T12: 0.0086 REMARK 3 T13: -0.0224 T23: 0.0007 REMARK 3 L TENSOR REMARK 3 L11: 3.8654 L22: 1.5744 REMARK 3 L33: 3.4605 L12: 0.1427 REMARK 3 L13: 1.8856 L23: 0.0410 REMARK 3 S TENSOR REMARK 3 S11: 0.2820 S12: -0.0791 S13: -0.5409 REMARK 3 S21: 0.0235 S22: -0.0300 S23: 0.6027 REMARK 3 S31: 0.2906 S32: -0.6732 S33: -0.2520 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 8 C 299 REMARK 3 ORIGIN FOR THE GROUP (A): 41.5119 1.9937 39.1443 REMARK 3 T TENSOR REMARK 3 T11: -0.1103 T22: -0.0627 REMARK 3 T33: -0.0482 T12: -0.0175 REMARK 3 T13: 0.0258 T23: -0.0014 REMARK 3 L TENSOR REMARK 3 L11: 1.1742 L22: 0.3796 REMARK 3 L33: 1.6991 L12: -0.0203 REMARK 3 L13: 1.1790 L23: -0.0245 REMARK 3 S TENSOR REMARK 3 S11: 0.0059 S12: 0.0639 S13: -0.0837 REMARK 3 S21: -0.0027 S22: 0.0025 S23: 0.0418 REMARK 3 S31: 0.0416 S32: -0.0839 S33: -0.0084 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 105 REMARK 3 ORIGIN FOR THE GROUP (A): 79.4923 6.3122 74.6094 REMARK 3 T TENSOR REMARK 3 T11: -0.1313 T22: -0.1975 REMARK 3 T33: -0.1389 T12: 0.0102 REMARK 3 T13: -0.1147 T23: 0.0346 REMARK 3 L TENSOR REMARK 3 L11: 3.6496 L22: 3.6691 REMARK 3 L33: 3.1340 L12: 0.3087 REMARK 3 L13: -0.2725 L23: -0.0221 REMARK 3 S TENSOR REMARK 3 S11: 0.1266 S12: 0.1999 S13: -0.2359 REMARK 3 S21: 0.1508 S22: -0.0870 S23: -0.2931 REMARK 3 S31: 0.1397 S32: 0.3250 S33: -0.0397 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4LL4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-JUL-13. REMARK 100 THE DEPOSITION ID IS D_1000080765. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-JUL-09 REMARK 200 TEMPERATURE (KELVIN) : 173.15 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : PAL/PLS REMARK 200 BEAMLINE : 5C (4A) REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.100 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 24910 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ID 4LL1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.16M TRI-SODIUM CITRATE, 16% PEG3350, REMARK 280 PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 294.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 32.49500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 3 REMARK 465 PHE A 4 REMARK 465 LYS A 5 REMARK 465 LYS A 6 REMARK 465 VAL A 146 REMARK 465 ASP A 147 REMARK 465 LEU A 148 REMARK 465 VAL A 149 REMARK 465 ASP A 150 REMARK 465 VAL A 151 REMARK 465 ASN A 152 REMARK 465 THR A 153 REMARK 465 PRO A 154 REMARK 465 PRO A 262 REMARK 465 SER A 263 REMARK 465 ILE A 264 REMARK 465 LEU A 265 REMARK 465 GLY A 266 REMARK 465 SER A 267 REMARK 465 ARG A 299 REMARK 465 SER A 300 REMARK 465 GLY A 301 REMARK 465 LEU A 302 REMARK 465 SER A 303 REMARK 465 SER A 304 REMARK 465 ARG A 305 REMARK 465 THR A 306 REMARK 465 SER A 307 REMARK 465 SER A 308 REMARK 465 MET A 309 REMARK 465 ALA A 310 REMARK 465 SER A 311 REMARK 465 ARG A 312 REMARK 465 THR A 313 REMARK 465 SER A 314 REMARK 465 SER A 315 REMARK 465 GLU A 316 REMARK 465 MET A 317 REMARK 465 MET C 3 REMARK 465 PHE C 4 REMARK 465 LYS C 5 REMARK 465 LYS C 6 REMARK 465 ILE C 7 REMARK 465 VAL C 149 REMARK 465 ASP C 150 REMARK 465 VAL C 151 REMARK 465 ASN C 152 REMARK 465 THR C 153 REMARK 465 LYS C 259 REMARK 465 ILE C 260 REMARK 465 ARG C 261 REMARK 465 PRO C 262 REMARK 465 SER C 263 REMARK 465 ILE C 264 REMARK 465 SER C 300 REMARK 465 GLY C 301 REMARK 465 LEU C 302 REMARK 465 SER C 303 REMARK 465 SER C 304 REMARK 465 ARG C 305 REMARK 465 THR C 306 REMARK 465 SER C 307 REMARK 465 SER C 308 REMARK 465 MET C 309 REMARK 465 ALA C 310 REMARK 465 SER C 311 REMARK 465 ARG C 312 REMARK 465 THR C 313 REMARK 465 SER C 314 REMARK 465 SER C 315 REMARK 465 GLU C 316 REMARK 465 MET C 317 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O THR A 112 N LYS A 115 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 LYS B 21 CD LYS B 21 CE 0.223 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 190 CA - CB - SG ANGL. DEV. = 7.1 DEGREES REMARK 500 MET C 57 CG - SD - CE ANGL. DEV. = 11.8 DEGREES REMARK 500 LEU C 148 CA - CB - CG ANGL. DEV. = 14.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 9 129.99 -178.34 REMARK 500 CYS A 36 -71.20 -66.40 REMARK 500 VAL A 38 142.64 -39.26 REMARK 500 SER A 60 64.07 -160.02 REMARK 500 TYR A 69 -11.56 -145.57 REMARK 500 ASP A 80 23.73 -76.54 REMARK 500 SER A 113 -59.26 -19.31 REMARK 500 LYS A 115 73.85 -61.70 REMARK 500 LEU A 156 -35.30 165.78 REMARK 500 ARG A 186 167.72 172.59 REMARK 500 GLU A 191 136.17 -34.30 REMARK 500 THR A 227 26.95 84.63 REMARK 500 LEU A 234 -125.79 -95.80 REMARK 500 ASP B 20 -7.28 -59.78 REMARK 500 GLU B 70 56.63 31.95 REMARK 500 LYS B 82 -21.81 74.42 REMARK 500 GLU B 88 135.05 178.51 REMARK 500 GLU B 103 12.71 -54.08 REMARK 500 LEU B 104 -18.08 -142.12 REMARK 500 PHE C 10 92.63 -161.52 REMARK 500 GLU C 25 -177.44 -54.07 REMARK 500 VAL C 38 120.10 -13.80 REMARK 500 LEU C 70 97.43 -161.55 REMARK 500 ASP C 74 152.14 175.12 REMARK 500 GLN C 81 60.97 -104.64 REMARK 500 PRO C 93 173.32 -51.74 REMARK 500 PRO C 106 166.63 -47.50 REMARK 500 THR C 112 72.01 72.46 REMARK 500 SER C 113 111.69 2.43 REMARK 500 LYS C 115 70.39 -162.51 REMARK 500 TYR C 118 48.33 -99.05 REMARK 500 ARG C 131 -178.70 -55.32 REMARK 500 PRO C 132 -85.26 -23.18 REMARK 500 LEU C 156 -28.98 -34.86 REMARK 500 ALA C 214 139.17 -172.94 REMARK 500 SER C 235 122.09 142.48 REMARK 500 ARG C 251 72.71 -108.65 REMARK 500 ALA D 18 171.31 -58.55 REMARK 500 CYS D 62 69.45 -115.04 REMARK 500 LYS D 81 118.52 -171.49 REMARK 500 GLU D 88 139.68 -172.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLN C 107 GLY C 108 -149.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4GFX RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF THE N-TERMINAL DOMAIN OF TXNIP REMARK 900 RELATED ID: 4LL1 RELATED DB: PDB DBREF 4LL4 A 3 317 UNP Q9H3M7 TXNIP_HUMAN 3 317 DBREF 4LL4 B 1 105 UNP P10599 THIO_HUMAN 1 105 DBREF 4LL4 C 3 317 UNP Q9H3M7 TXNIP_HUMAN 3 317 DBREF 4LL4 D 1 105 UNP P10599 THIO_HUMAN 1 105 SEQADV 4LL4 SER A 170 UNP Q9H3M7 CYS 170 ENGINEERED MUTATION SEQADV 4LL4 SER A 205 UNP Q9H3M7 CYS 205 ENGINEERED MUTATION SEQADV 4LL4 SER A 267 UNP Q9H3M7 CYS 267 ENGINEERED MUTATION SEQADV 4LL4 ALA B 35 UNP P10599 CYS 35 ENGINEERED MUTATION SEQADV 4LL4 SER C 170 UNP Q9H3M7 CYS 170 ENGINEERED MUTATION SEQADV 4LL4 SER C 205 UNP Q9H3M7 CYS 205 ENGINEERED MUTATION SEQADV 4LL4 SER C 267 UNP Q9H3M7 CYS 267 ENGINEERED MUTATION SEQADV 4LL4 ALA D 35 UNP P10599 CYS 35 ENGINEERED MUTATION SEQRES 1 A 315 MET PHE LYS LYS ILE LYS SER PHE GLU VAL VAL PHE ASN SEQRES 2 A 315 ASP PRO GLU LYS VAL TYR GLY SER GLY GLU LYS VAL ALA SEQRES 3 A 315 GLY ARG VAL ILE VAL GLU VAL CYS GLU VAL THR ARG VAL SEQRES 4 A 315 LYS ALA VAL ARG ILE LEU ALA CYS GLY VAL ALA LYS VAL SEQRES 5 A 315 LEU TRP MET GLN GLY SER GLN GLN CYS LYS GLN THR SER SEQRES 6 A 315 GLU TYR LEU ARG TYR GLU ASP THR LEU LEU LEU GLU ASP SEQRES 7 A 315 GLN PRO THR GLY GLU ASN GLU MET VAL ILE MET ARG PRO SEQRES 8 A 315 GLY ASN LYS TYR GLU TYR LYS PHE GLY PHE GLU LEU PRO SEQRES 9 A 315 GLN GLY PRO LEU GLY THR SER PHE LYS GLY LYS TYR GLY SEQRES 10 A 315 CYS VAL ASP TYR TRP VAL LYS ALA PHE LEU ASP ARG PRO SEQRES 11 A 315 SER GLN PRO THR GLN GLU THR LYS LYS ASN PHE GLU VAL SEQRES 12 A 315 VAL ASP LEU VAL ASP VAL ASN THR PRO ASP LEU MET ALA SEQRES 13 A 315 PRO VAL SER ALA LYS LYS GLU LYS LYS VAL SER SER MET SEQRES 14 A 315 PHE ILE PRO ASP GLY ARG VAL SER VAL SER ALA ARG ILE SEQRES 15 A 315 ASP ARG LYS GLY PHE CYS GLU GLY ASP GLU ILE SER ILE SEQRES 16 A 315 HIS ALA ASP PHE GLU ASN THR SER SER ARG ILE VAL VAL SEQRES 17 A 315 PRO LYS ALA ALA ILE VAL ALA ARG HIS THR TYR LEU ALA SEQRES 18 A 315 ASN GLY GLN THR LYS VAL LEU THR GLN LYS LEU SER SER SEQRES 19 A 315 VAL ARG GLY ASN HIS ILE ILE SER GLY THR CYS ALA SER SEQRES 20 A 315 TRP ARG GLY LYS SER LEU ARG VAL GLN LYS ILE ARG PRO SEQRES 21 A 315 SER ILE LEU GLY SER ASN ILE LEU ARG VAL GLU TYR SER SEQRES 22 A 315 LEU LEU ILE TYR VAL SER VAL PRO GLY SER LYS LYS VAL SEQRES 23 A 315 ILE LEU ASP LEU PRO LEU VAL ILE GLY SER ARG SER GLY SEQRES 24 A 315 LEU SER SER ARG THR SER SER MET ALA SER ARG THR SER SEQRES 25 A 315 SER GLU MET SEQRES 1 B 105 MET VAL LYS GLN ILE GLU SER LYS THR ALA PHE GLN GLU SEQRES 2 B 105 ALA LEU ASP ALA ALA GLY ASP LYS LEU VAL VAL VAL ASP SEQRES 3 B 105 PHE SER ALA THR TRP CYS GLY PRO ALA LYS MET ILE LYS SEQRES 4 B 105 PRO PHE PHE HIS SER LEU SER GLU LYS TYR SER ASN VAL SEQRES 5 B 105 ILE PHE LEU GLU VAL ASP VAL ASP ASP CYS GLN ASP VAL SEQRES 6 B 105 ALA SER GLU CYS GLU VAL LYS CYS MET PRO THR PHE GLN SEQRES 7 B 105 PHE PHE LYS LYS GLY GLN LYS VAL GLY GLU PHE SER GLY SEQRES 8 B 105 ALA ASN LYS GLU LYS LEU GLU ALA THR ILE ASN GLU LEU SEQRES 9 B 105 VAL SEQRES 1 C 315 MET PHE LYS LYS ILE LYS SER PHE GLU VAL VAL PHE ASN SEQRES 2 C 315 ASP PRO GLU LYS VAL TYR GLY SER GLY GLU LYS VAL ALA SEQRES 3 C 315 GLY ARG VAL ILE VAL GLU VAL CYS GLU VAL THR ARG VAL SEQRES 4 C 315 LYS ALA VAL ARG ILE LEU ALA CYS GLY VAL ALA LYS VAL SEQRES 5 C 315 LEU TRP MET GLN GLY SER GLN GLN CYS LYS GLN THR SER SEQRES 6 C 315 GLU TYR LEU ARG TYR GLU ASP THR LEU LEU LEU GLU ASP SEQRES 7 C 315 GLN PRO THR GLY GLU ASN GLU MET VAL ILE MET ARG PRO SEQRES 8 C 315 GLY ASN LYS TYR GLU TYR LYS PHE GLY PHE GLU LEU PRO SEQRES 9 C 315 GLN GLY PRO LEU GLY THR SER PHE LYS GLY LYS TYR GLY SEQRES 10 C 315 CYS VAL ASP TYR TRP VAL LYS ALA PHE LEU ASP ARG PRO SEQRES 11 C 315 SER GLN PRO THR GLN GLU THR LYS LYS ASN PHE GLU VAL SEQRES 12 C 315 VAL ASP LEU VAL ASP VAL ASN THR PRO ASP LEU MET ALA SEQRES 13 C 315 PRO VAL SER ALA LYS LYS GLU LYS LYS VAL SER SER MET SEQRES 14 C 315 PHE ILE PRO ASP GLY ARG VAL SER VAL SER ALA ARG ILE SEQRES 15 C 315 ASP ARG LYS GLY PHE CYS GLU GLY ASP GLU ILE SER ILE SEQRES 16 C 315 HIS ALA ASP PHE GLU ASN THR SER SER ARG ILE VAL VAL SEQRES 17 C 315 PRO LYS ALA ALA ILE VAL ALA ARG HIS THR TYR LEU ALA SEQRES 18 C 315 ASN GLY GLN THR LYS VAL LEU THR GLN LYS LEU SER SER SEQRES 19 C 315 VAL ARG GLY ASN HIS ILE ILE SER GLY THR CYS ALA SER SEQRES 20 C 315 TRP ARG GLY LYS SER LEU ARG VAL GLN LYS ILE ARG PRO SEQRES 21 C 315 SER ILE LEU GLY SER ASN ILE LEU ARG VAL GLU TYR SER SEQRES 22 C 315 LEU LEU ILE TYR VAL SER VAL PRO GLY SER LYS LYS VAL SEQRES 23 C 315 ILE LEU ASP LEU PRO LEU VAL ILE GLY SER ARG SER GLY SEQRES 24 C 315 LEU SER SER ARG THR SER SER MET ALA SER ARG THR SER SEQRES 25 C 315 SER GLU MET SEQRES 1 D 105 MET VAL LYS GLN ILE GLU SER LYS THR ALA PHE GLN GLU SEQRES 2 D 105 ALA LEU ASP ALA ALA GLY ASP LYS LEU VAL VAL VAL ASP SEQRES 3 D 105 PHE SER ALA THR TRP CYS GLY PRO ALA LYS MET ILE LYS SEQRES 4 D 105 PRO PHE PHE HIS SER LEU SER GLU LYS TYR SER ASN VAL SEQRES 5 D 105 ILE PHE LEU GLU VAL ASP VAL ASP ASP CYS GLN ASP VAL SEQRES 6 D 105 ALA SER GLU CYS GLU VAL LYS CYS MET PRO THR PHE GLN SEQRES 7 D 105 PHE PHE LYS LYS GLY GLN LYS VAL GLY GLU PHE SER GLY SEQRES 8 D 105 ALA ASN LYS GLU LYS LEU GLU ALA THR ILE ASN GLU LEU SEQRES 9 D 105 VAL FORMUL 5 HOH *59(H2 O) HELIX 1 1 SER B 7 ALA B 18 1 12 HELIX 2 2 CYS B 32 TYR B 49 1 18 HELIX 3 3 CYS B 62 CYS B 69 1 8 HELIX 4 4 ASN B 93 GLU B 103 1 11 HELIX 5 5 SER D 7 ALA D 18 1 12 HELIX 6 6 CYS D 32 TYR D 49 1 18 HELIX 7 7 CYS D 62 CYS D 69 1 8 HELIX 8 8 ASN D 93 VAL D 105 1 13 SHEET 1 A 3 SER A 9 PHE A 14 0 SHEET 2 A 3 LYS A 26 GLU A 34 -1 O ARG A 30 N VAL A 13 SHEET 3 A 3 TYR A 97 GLU A 104 -1 O TYR A 97 N VAL A 33 SHEET 1 B 2 THR A 39 VAL A 41 0 SHEET 2 B 2 VAL A 89 MET A 91 -1 O MET A 91 N THR A 39 SHEET 1 C 4 GLN A 62 LEU A 76 0 SHEET 2 C 4 ALA A 43 MET A 57 -1 N ILE A 46 O ASP A 74 SHEET 3 C 4 GLY A 119 ASP A 130 -1 O LYS A 126 N LEU A 47 SHEET 4 C 4 GLN A 137 PHE A 143 -1 O LYS A 141 N VAL A 125 SHEET 1 D 4 VAL A 160 LYS A 167 0 SHEET 2 D 4 ARG A 177 ILE A 184 -1 O ALA A 182 N ALA A 162 SHEET 3 D 4 GLU A 194 ASN A 203 -1 O HIS A 198 N ARG A 183 SHEET 4 D 4 THR A 246 ARG A 256 -1 O LEU A 255 N ILE A 195 SHEET 1 E 5 GLY A 188 CYS A 190 0 SHEET 2 E 5 VAL A 288 GLY A 297 1 O VAL A 295 N PHE A 189 SHEET 3 E 5 ILE A 269 SER A 281 -1 N LEU A 276 O LEU A 292 SHEET 4 E 5 VAL A 210 ALA A 223 -1 N ARG A 218 O GLU A 273 SHEET 5 E 5 GLN A 226 ARG A 238 -1 O LYS A 228 N TYR A 221 SHEET 1 F 5 VAL B 2 LYS B 3 0 SHEET 2 F 5 ILE B 53 ASP B 58 1 O GLU B 56 N LYS B 3 SHEET 3 F 5 VAL B 23 SER B 28 1 N ASP B 26 O VAL B 57 SHEET 4 F 5 THR B 76 LYS B 81 -1 O PHE B 80 N VAL B 23 SHEET 5 F 5 GLN B 84 SER B 90 -1 O VAL B 86 N PHE B 79 SHEET 1 G 3 SER C 9 PHE C 14 0 SHEET 2 G 3 LYS C 26 GLU C 34 -1 O ILE C 32 N GLU C 11 SHEET 3 G 3 TYR C 97 GLU C 104 -1 O PHE C 103 N VAL C 27 SHEET 1 H 5 VAL C 20 GLY C 22 0 SHEET 2 H 5 GLN C 137 VAL C 146 1 O GLU C 144 N TYR C 21 SHEET 3 H 5 GLY C 119 ASP C 130 -1 N ALA C 127 O THR C 139 SHEET 4 H 5 ALA C 43 GLN C 58 -1 N LEU C 47 O LYS C 126 SHEET 5 H 5 GLN C 61 LEU C 76 -1 O GLN C 61 N GLN C 58 SHEET 1 I 4 VAL C 20 GLY C 22 0 SHEET 2 I 4 GLN C 137 VAL C 146 1 O GLU C 144 N TYR C 21 SHEET 3 I 4 GLY C 119 ASP C 130 -1 N ALA C 127 O THR C 139 SHEET 4 I 4 PHE C 114 GLY C 116 -1 N GLY C 116 O GLY C 119 SHEET 1 J 2 THR C 39 VAL C 41 0 SHEET 2 J 2 VAL C 89 MET C 91 -1 O MET C 91 N THR C 39 SHEET 1 K 4 VAL C 160 LYS C 167 0 SHEET 2 K 4 ARG C 177 ILE C 184 -1 O VAL C 178 N LYS C 166 SHEET 3 K 4 GLU C 194 ASN C 203 -1 O ASP C 200 N SER C 181 SHEET 4 K 4 THR C 246 ARG C 256 -1 O LYS C 253 N ILE C 197 SHEET 1 L 5 GLY C 188 CYS C 190 0 SHEET 2 L 5 VAL C 288 GLY C 297 1 O VAL C 295 N PHE C 189 SHEET 3 L 5 ILE C 269 SER C 281 -1 N LEU C 276 O LEU C 292 SHEET 4 L 5 VAL C 210 ALA C 223 -1 N ALA C 214 O LEU C 277 SHEET 5 L 5 GLN C 226 ARG C 238 -1 O LEU C 230 N HIS C 219 SHEET 1 M 5 LYS D 3 ILE D 5 0 SHEET 2 M 5 VAL D 52 ASP D 58 1 O GLU D 56 N ILE D 5 SHEET 3 M 5 LEU D 22 SER D 28 1 N VAL D 24 O ILE D 53 SHEET 4 M 5 THR D 76 LYS D 81 -1 O THR D 76 N PHE D 27 SHEET 5 M 5 GLN D 84 SER D 90 -1 O VAL D 86 N PHE D 79 SSBOND 1 CYS A 63 CYS A 190 1555 1555 2.05 SSBOND 2 CYS A 247 CYS B 32 1555 1555 2.68 SSBOND 3 CYS C 63 CYS C 190 1555 1555 2.08 SSBOND 4 CYS C 247 CYS D 32 1555 1555 2.16 CISPEP 1 GLN A 226 THR A 227 0 20.49 CISPEP 2 MET B 74 PRO B 75 0 -14.84 CISPEP 3 ASN C 224 GLY C 225 0 -5.11 CISPEP 4 MET D 74 PRO D 75 0 -7.41 CRYST1 79.826 64.990 88.416 90.00 90.88 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012527 0.000000 0.000192 0.00000 SCALE2 0.000000 0.015387 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011312 0.00000