HEADER HYDROLASE/HYDROLASE INHIBITOR 09-JUL-13 4LLP TITLE CRYSTAL STRUCTURE OF PDE10A2 WITH FRAGMENT ZT401 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAMP AND CAMP-INHIBITED CGMP 3',5'-CYCLIC PHOSPHODIESTERASE COMPND 3 10A; COMPND 4 CHAIN: A, B; COMPND 5 FRAGMENT: CATALYTIC DOMAIN, UNP RESIDUES 439-779; COMPND 6 EC: 3.1.4.17, 3.1.4.35; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PDE10A; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 KEYWDS FRAGMENT SCREENING, HYDROLASE, HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR V.SRIDHAR,J.BADGER,C.LOGAN,B.CHIE-LEON,V.NIENABER REVDAT 3 20-SEP-23 4LLP 1 REMARK SEQADV LINK REVDAT 2 26-MAR-14 4LLP 1 JRNL REVDAT 1 26-FEB-14 4LLP 0 JRNL AUTH M.I.RECHT,V.SRIDHAR,J.BADGER,P.Y.BOUNAUD,C.LOGAN, JRNL AUTH 2 B.CHIE-LEON,V.NIENABER,F.E.TORRES JRNL TITL IDENTIFICATION AND OPTIMIZATION OF PDE10A INHIBITORS USING JRNL TITL 2 FRAGMENT-BASED SCREENING BY NANOCALORIMETRY AND X-RAY JRNL TITL 3 CRYSTALLOGRAPHY. JRNL REF J BIOMOL SCREEN V. 19 497 2014 JRNL REFN ISSN 1087-0571 JRNL PMID 24375910 JRNL DOI 10.1177/1087057113516493 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0072 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 43.01 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 62574 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3344 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.75 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.79 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4545 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3380 REMARK 3 BIN FREE R VALUE SET COUNT : 228 REMARK 3 BIN FREE R VALUE : 0.3550 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5011 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 22 REMARK 3 SOLVENT ATOMS : 235 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.70 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.12000 REMARK 3 B22 (A**2) : -0.10000 REMARK 3 B33 (A**2) : -0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.136 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.128 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.092 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.884 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.943 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5202 ; 0.012 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7056 ; 1.275 ; 1.951 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 631 ; 4.892 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 229 ;34.805 ;23.886 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 899 ;13.752 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 26 ;15.303 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 792 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3884 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3162 ; 1.093 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 5124 ; 1.826 ; 2.500 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2040 ; 2.088 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1932 ; 3.284 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4LLP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-JUL-13. REMARK 100 THE DEPOSITION ID IS D_1000080786. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-JUL-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 300 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 65994 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -4.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.05100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 30.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 6.00 REMARK 200 R MERGE FOR SHELL (I) : 0.57100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2OUR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18% PEG 4450, 0.2M CALCIUM ACETATE, REMARK 280 50MM BME, PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.19150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 77.37300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 41.29400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 77.37300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.19150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 41.29400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2120 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27030 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 445 REMARK 465 SER A 776 REMARK 465 SER A 777 REMARK 465 PRO A 778 REMARK 465 SER A 779 REMARK 465 VAL A 780 REMARK 465 ALA A 781 REMARK 465 GLN A 782 REMARK 465 LYS A 783 REMARK 465 ALA A 784 REMARK 465 ALA A 785 REMARK 465 ALA A 786 REMARK 465 SER A 787 REMARK 465 GLU A 788 REMARK 465 ASP A 789 REMARK 465 GLY B 445 REMARK 465 ALA B 446 REMARK 465 GLY B 447 REMARK 465 ARG B 568 REMARK 465 GLY B 569 REMARK 465 PHE B 570 REMARK 465 SER B 571 REMARK 465 ASN B 572 REMARK 465 SER B 573 REMARK 465 TYR B 574 REMARK 465 LEU B 575 REMARK 465 GLN B 576 REMARK 465 LYS B 577 REMARK 465 PHE B 578 REMARK 465 ASP B 579 REMARK 465 HIS B 580 REMARK 465 PRO B 581 REMARK 465 LEU B 582 REMARK 465 ALA B 583 REMARK 465 ALA B 584 REMARK 465 LEU B 585 REMARK 465 TYR B 586 REMARK 465 SER B 587 REMARK 465 THR B 588 REMARK 465 SER B 589 REMARK 465 THR B 590 REMARK 465 ILE B 775 REMARK 465 SER B 776 REMARK 465 SER B 777 REMARK 465 PRO B 778 REMARK 465 SER B 779 REMARK 465 VAL B 780 REMARK 465 ALA B 781 REMARK 465 GLN B 782 REMARK 465 LYS B 783 REMARK 465 ALA B 784 REMARK 465 ALA B 785 REMARK 465 ALA B 786 REMARK 465 SER B 787 REMARK 465 GLU B 788 REMARK 465 ASP B 789 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER A 453 OG REMARK 470 GLU A 454 CG CD OE1 OE2 REMARK 470 GLN A 461 CG CD OE1 NE2 REMARK 470 LYS A 470 CG CD CE NZ REMARK 470 GLU A 504 CG CD OE1 OE2 REMARK 470 GLU A 506 CG CD OE1 OE2 REMARK 470 ARG A 521 CD NE CZ NH1 NH2 REMARK 470 LYS A 554 CD CE NZ REMARK 470 LYS A 577 CG CD CE NZ REMARK 470 GLU A 606 CD OE1 OE2 REMARK 470 LYS A 643 CD CE NZ REMARK 470 LYS A 686 CD CE NZ REMARK 470 GLN A 709 CG CD OE1 NE2 REMARK 470 LYS A 753 CE NZ REMARK 470 THR A 773 OG1 CG2 REMARK 470 ILE A 775 CG1 CG2 CD1 REMARK 470 GLU B 454 CG CD OE1 OE2 REMARK 470 GLN B 461 CD OE1 NE2 REMARK 470 LYS B 470 CG CD CE NZ REMARK 470 GLU B 471 CD OE1 OE2 REMARK 470 GLU B 504 CG CD OE1 OE2 REMARK 470 GLU B 506 CG CD OE1 OE2 REMARK 470 LYS B 507 CD CE NZ REMARK 470 ARG B 521 CG CD NE CZ NH1 NH2 REMARK 470 SER B 617 OG REMARK 470 GLU B 620 CG CD OE1 OE2 REMARK 470 GLU B 647 CG CD OE1 OE2 REMARK 470 ASN B 658 CG OD1 ND2 REMARK 470 GLN B 659 CG CD OE1 NE2 REMARK 470 GLU B 695 CG CD OE1 OE2 REMARK 470 GLU B 699 CG CD OE1 OE2 REMARK 470 LYS B 753 CD CE NZ REMARK 470 ARG B 767 NE CZ NH1 NH2 REMARK 470 TRP B 774 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 774 CZ3 CH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 524 -51.58 -129.01 REMARK 500 VAL A 733 -63.30 -124.03 REMARK 500 TYR B 524 -40.00 -137.49 REMARK 500 ASN B 526 -169.69 -124.33 REMARK 500 ASP B 566 69.14 61.30 REMARK 500 VAL B 733 -61.87 -122.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 THE FOUR DIVALENT CATIONS ARE REPRESENTED BY NI BUT THIS REMARK 600 IDENTIFICATION IS SPECULATIVE REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 803 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 529 NE2 REMARK 620 2 HIS A 563 NE2 91.7 REMARK 620 3 ASP A 564 OD2 86.6 86.2 REMARK 620 4 ASP A 674 OD2 90.1 90.1 175.0 REMARK 620 5 HOH A 904 O 86.0 173.4 99.8 83.7 REMARK 620 6 HOH A1007 O 166.8 101.2 97.0 87.0 80.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 804 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 564 OD1 REMARK 620 2 HOH A 902 O 82.7 REMARK 620 3 HOH A1007 O 92.5 93.2 REMARK 620 4 HOH A1008 O 165.5 83.4 92.2 REMARK 620 5 HOH A1009 O 101.9 174.8 88.9 91.8 REMARK 620 6 HOH A1010 O 87.7 93.3 173.5 89.2 84.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI B 901 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 529 NE2 REMARK 620 2 HIS B 563 NE2 94.2 REMARK 620 3 ASP B 564 OD2 102.6 74.7 REMARK 620 4 ASP B 674 OD1 74.9 101.9 175.7 REMARK 620 5 HOH B1050 O 75.0 162.5 94.0 88.7 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI B 902 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 564 OD1 REMARK 620 2 HOH B1055 O 87.9 REMARK 620 3 HOH B1057 O 88.5 79.1 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 4ZE A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 4ZE A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 804 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI B 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI B 902 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4LKQ RELATED DB: PDB REMARK 900 RELATED ID: 4LLJ RELATED DB: PDB REMARK 900 RELATED ID: 4LLL RELATED DB: PDB REMARK 900 RELATED ID: 4LLX RELATED DB: PDB REMARK 900 RELATED ID: 4LM0 RELATED DB: PDB REMARK 900 RELATED ID: 4LM1 RELATED DB: PDB REMARK 900 RELATED ID: 4LM2 RELATED DB: PDB REMARK 900 RELATED ID: 4LM3 RELATED DB: PDB REMARK 900 RELATED ID: 4LM4 RELATED DB: PDB DBREF 4LLP A 449 789 UNP Q9Y233 PDE10_HUMAN 439 779 DBREF 4LLP B 449 789 UNP Q9Y233 PDE10_HUMAN 439 779 SEQADV 4LLP GLY A 445 UNP Q9Y233 EXPRESSION TAG SEQADV 4LLP ALA A 446 UNP Q9Y233 EXPRESSION TAG SEQADV 4LLP GLY A 447 UNP Q9Y233 EXPRESSION TAG SEQADV 4LLP THR A 448 UNP Q9Y233 EXPRESSION TAG SEQADV 4LLP GLY B 445 UNP Q9Y233 EXPRESSION TAG SEQADV 4LLP ALA B 446 UNP Q9Y233 EXPRESSION TAG SEQADV 4LLP GLY B 447 UNP Q9Y233 EXPRESSION TAG SEQADV 4LLP THR B 448 UNP Q9Y233 EXPRESSION TAG SEQRES 1 A 345 GLY ALA GLY THR SER ILE CYS THR SER GLU GLU TRP GLN SEQRES 2 A 345 GLY LEU MET GLN PHE THR LEU PRO VAL ARG LEU CYS LYS SEQRES 3 A 345 GLU ILE GLU LEU PHE HIS PHE ASP ILE GLY PRO PHE GLU SEQRES 4 A 345 ASN MET TRP PRO GLY ILE PHE VAL TYR MET VAL HIS ARG SEQRES 5 A 345 SER CYS GLY THR SER CYS PHE GLU LEU GLU LYS LEU CYS SEQRES 6 A 345 ARG PHE ILE MET SER VAL LYS LYS ASN TYR ARG ARG VAL SEQRES 7 A 345 PRO TYR HIS ASN TRP LYS HIS ALA VAL THR VAL ALA HIS SEQRES 8 A 345 CYS MET TYR ALA ILE LEU GLN ASN ASN HIS THR LEU PHE SEQRES 9 A 345 THR ASP LEU GLU ARG LYS GLY LEU LEU ILE ALA CYS LEU SEQRES 10 A 345 CYS HIS ASP LEU ASP HIS ARG GLY PHE SER ASN SER TYR SEQRES 11 A 345 LEU GLN LYS PHE ASP HIS PRO LEU ALA ALA LEU TYR SER SEQRES 12 A 345 THR SER THR MET GLU GLN HIS HIS PHE SER GLN THR VAL SEQRES 13 A 345 SER ILE LEU GLN LEU GLU GLY HIS ASN ILE PHE SER THR SEQRES 14 A 345 LEU SER SER SER GLU TYR GLU GLN VAL LEU GLU ILE ILE SEQRES 15 A 345 ARG LYS ALA ILE ILE ALA THR ASP LEU ALA LEU TYR PHE SEQRES 16 A 345 GLY ASN ARG LYS GLN LEU GLU GLU MET TYR GLN THR GLY SEQRES 17 A 345 SER LEU ASN LEU ASN ASN GLN SER HIS ARG ASP ARG VAL SEQRES 18 A 345 ILE GLY LEU MET MET THR ALA CYS ASP LEU CYS SER VAL SEQRES 19 A 345 THR LYS LEU TRP PRO VAL THR LYS LEU THR ALA ASN ASP SEQRES 20 A 345 ILE TYR ALA GLU PHE TRP ALA GLU GLY ASP GLU MET LYS SEQRES 21 A 345 LYS LEU GLY ILE GLN PRO ILE PRO MET MET ASP ARG ASP SEQRES 22 A 345 LYS LYS ASP GLU VAL PRO GLN GLY GLN LEU GLY PHE TYR SEQRES 23 A 345 ASN ALA VAL ALA ILE PRO CYS TYR THR THR LEU THR GLN SEQRES 24 A 345 ILE LEU PRO PRO THR GLU PRO LEU LEU LYS ALA CYS ARG SEQRES 25 A 345 ASP ASN LEU SER GLN TRP GLU LYS VAL ILE ARG GLY GLU SEQRES 26 A 345 GLU THR ALA THR TRP ILE SER SER PRO SER VAL ALA GLN SEQRES 27 A 345 LYS ALA ALA ALA SER GLU ASP SEQRES 1 B 345 GLY ALA GLY THR SER ILE CYS THR SER GLU GLU TRP GLN SEQRES 2 B 345 GLY LEU MET GLN PHE THR LEU PRO VAL ARG LEU CYS LYS SEQRES 3 B 345 GLU ILE GLU LEU PHE HIS PHE ASP ILE GLY PRO PHE GLU SEQRES 4 B 345 ASN MET TRP PRO GLY ILE PHE VAL TYR MET VAL HIS ARG SEQRES 5 B 345 SER CYS GLY THR SER CYS PHE GLU LEU GLU LYS LEU CYS SEQRES 6 B 345 ARG PHE ILE MET SER VAL LYS LYS ASN TYR ARG ARG VAL SEQRES 7 B 345 PRO TYR HIS ASN TRP LYS HIS ALA VAL THR VAL ALA HIS SEQRES 8 B 345 CYS MET TYR ALA ILE LEU GLN ASN ASN HIS THR LEU PHE SEQRES 9 B 345 THR ASP LEU GLU ARG LYS GLY LEU LEU ILE ALA CYS LEU SEQRES 10 B 345 CYS HIS ASP LEU ASP HIS ARG GLY PHE SER ASN SER TYR SEQRES 11 B 345 LEU GLN LYS PHE ASP HIS PRO LEU ALA ALA LEU TYR SER SEQRES 12 B 345 THR SER THR MET GLU GLN HIS HIS PHE SER GLN THR VAL SEQRES 13 B 345 SER ILE LEU GLN LEU GLU GLY HIS ASN ILE PHE SER THR SEQRES 14 B 345 LEU SER SER SER GLU TYR GLU GLN VAL LEU GLU ILE ILE SEQRES 15 B 345 ARG LYS ALA ILE ILE ALA THR ASP LEU ALA LEU TYR PHE SEQRES 16 B 345 GLY ASN ARG LYS GLN LEU GLU GLU MET TYR GLN THR GLY SEQRES 17 B 345 SER LEU ASN LEU ASN ASN GLN SER HIS ARG ASP ARG VAL SEQRES 18 B 345 ILE GLY LEU MET MET THR ALA CYS ASP LEU CYS SER VAL SEQRES 19 B 345 THR LYS LEU TRP PRO VAL THR LYS LEU THR ALA ASN ASP SEQRES 20 B 345 ILE TYR ALA GLU PHE TRP ALA GLU GLY ASP GLU MET LYS SEQRES 21 B 345 LYS LEU GLY ILE GLN PRO ILE PRO MET MET ASP ARG ASP SEQRES 22 B 345 LYS LYS ASP GLU VAL PRO GLN GLY GLN LEU GLY PHE TYR SEQRES 23 B 345 ASN ALA VAL ALA ILE PRO CYS TYR THR THR LEU THR GLN SEQRES 24 B 345 ILE LEU PRO PRO THR GLU PRO LEU LEU LYS ALA CYS ARG SEQRES 25 B 345 ASP ASN LEU SER GLN TRP GLU LYS VAL ILE ARG GLY GLU SEQRES 26 B 345 GLU THR ALA THR TRP ILE SER SER PRO SER VAL ALA GLN SEQRES 27 B 345 LYS ALA ALA ALA SER GLU ASP HET 4ZE A 801 9 HET 4ZE A 802 9 HET NI A 803 1 HET NI A 804 1 HET NI B 901 1 HET NI B 902 1 HETNAM 4ZE 4-AMINO-2-METHYLPHENOL HETNAM NI NICKEL (II) ION FORMUL 3 4ZE 2(C7 H9 N O) FORMUL 5 NI 4(NI 2+) FORMUL 9 HOH *235(H2 O) HELIX 1 1 THR A 452 PHE A 462 1 11 HELIX 2 2 PRO A 465 ILE A 472 1 8 HELIX 3 3 ILE A 479 ASN A 484 5 6 HELIX 4 4 MET A 485 GLY A 499 1 15 HELIX 5 5 GLU A 504 ASN A 518 1 15 HELIX 6 6 ASN A 526 ASN A 544 1 19 HELIX 7 7 HIS A 545 PHE A 548 5 4 HELIX 8 8 THR A 549 HIS A 563 1 15 HELIX 9 9 SER A 571 PHE A 578 1 8 HELIX 10 10 HIS A 580 TYR A 586 1 7 HELIX 11 11 SER A 589 GLN A 604 1 16 HELIX 12 12 SER A 615 THR A 633 1 19 HELIX 13 13 ASP A 634 THR A 651 1 18 HELIX 14 14 ASN A 658 LEU A 675 1 18 HELIX 15 15 CYS A 676 LYS A 680 5 5 HELIX 16 16 LEU A 681 LEU A 706 1 26 HELIX 17 17 ILE A 711 ASP A 720 5 10 HELIX 18 18 GLU A 721 VAL A 733 1 13 HELIX 19 19 VAL A 733 LEU A 745 1 13 HELIX 20 20 THR A 748 ARG A 767 1 20 HELIX 21 21 THR B 452 PHE B 462 1 11 HELIX 22 22 PRO B 465 CYS B 469 5 5 HELIX 23 23 LYS B 470 LEU B 474 5 5 HELIX 24 24 PHE B 482 ASN B 484 5 3 HELIX 25 25 MET B 485 GLY B 499 1 15 HELIX 26 26 GLU B 504 TYR B 519 1 16 HELIX 27 27 ASN B 526 ASN B 544 1 19 HELIX 28 28 HIS B 545 PHE B 548 5 4 HELIX 29 29 THR B 549 HIS B 563 1 15 HELIX 30 30 GLU B 592 GLN B 604 1 13 HELIX 31 31 SER B 615 THR B 633 1 19 HELIX 32 32 ASP B 634 THR B 651 1 18 HELIX 33 33 ASN B 658 LEU B 675 1 18 HELIX 34 34 CYS B 676 LYS B 680 5 5 HELIX 35 35 LEU B 681 LYS B 686 1 6 HELIX 36 36 LEU B 687 ALA B 689 5 3 HELIX 37 37 ASN B 690 ILE B 692 5 3 HELIX 38 38 TYR B 693 LYS B 705 1 13 HELIX 39 39 ILE B 711 ASP B 715 5 5 HELIX 40 40 GLU B 721 VAL B 733 1 13 HELIX 41 41 VAL B 733 LEU B 745 1 13 HELIX 42 42 THR B 748 ARG B 767 1 20 LINK NE2 HIS A 529 NI NI A 803 1555 1555 2.19 LINK NE2 HIS A 563 NI NI A 803 1555 1555 2.23 LINK OD2 ASP A 564 NI NI A 803 1555 1555 2.12 LINK OD1 ASP A 564 NI NI A 804 1555 1555 2.16 LINK OD2 ASP A 674 NI NI A 803 1555 1555 2.11 LINK NI NI A 803 O HOH A 904 1555 1555 2.45 LINK NI NI A 803 O HOH A1007 1555 1555 2.00 LINK NI NI A 804 O HOH A 902 1555 1555 2.31 LINK NI NI A 804 O HOH A1007 1555 1555 2.28 LINK NI NI A 804 O HOH A1008 1555 1555 2.30 LINK NI NI A 804 O HOH A1009 1555 1555 2.20 LINK NI NI A 804 O HOH A1010 1555 1555 2.25 LINK NE2 HIS B 529 NI NI B 901 1555 1555 2.31 LINK NE2 HIS B 563 NI NI B 901 1555 1555 2.30 LINK OD2 ASP B 564 NI NI B 901 1555 1555 2.55 LINK OD1 ASP B 564 NI NI B 902 1555 1555 2.24 LINK OD1 ASP B 674 NI NI B 901 1555 1555 2.29 LINK NI NI B 901 O HOH B1050 1555 1555 2.62 LINK NI NI B 902 O HOH B1055 1555 1555 2.50 LINK NI NI B 902 O HOH B1057 1555 1555 2.42 SITE 1 AC1 5 ILE A 692 MET A 713 GLN A 726 PHE A 729 SITE 2 AC1 5 HOH A1064 SITE 1 AC2 4 ILE A 692 GLN A 726 HOH A1064 HOH A1065 SITE 1 AC3 6 HIS A 529 HIS A 563 ASP A 564 ASP A 674 SITE 2 AC3 6 HOH A 904 HOH A1007 SITE 1 AC4 6 ASP A 564 HOH A 902 HOH A1007 HOH A1008 SITE 2 AC4 6 HOH A1009 HOH A1010 SITE 1 AC5 7 HIS B 529 HIS B 563 ASP B 564 ASP B 674 SITE 2 AC5 7 NI B 902 HOH B1050 HOH B1056 SITE 1 AC6 5 HIS B 525 ASP B 564 NI B 901 HOH B1055 SITE 2 AC6 5 HOH B1057 CRYST1 50.383 82.588 154.746 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019848 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012108 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006462 0.00000