HEADER TRANSFERASE 09-JUL-13 4LLT TITLE CRYSTAL STRUCTURE OF A FARNESYL DIPHOSPHATE SYNTHASE FROM ROSEOBACTER TITLE 2 DENITRIFICANS OCH 114, TARGET EFI-509393, WITH TWO IPP AND CALCIUM TITLE 3 BOUND IN ACTIVE SITE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GERANYLTRANSTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: FARNESYL DIPHOSPHATE SYNTHASE; COMPND 5 EC: 2.5.1.10; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ROSEOBACTER DENITRIFICANS; SOURCE 3 ORGANISM_TAXID: 375451; SOURCE 4 STRAIN: ATCC 33942 / OCH 114; SOURCE 5 GENE: ISPA, RD1_0549; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PSGC-HIS KEYWDS STRUCTURAL GENOMICS, ENZYME FUNCTION INITIATIVE, POLYPRENYL KEYWDS 2 SYNTHETASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.KIM,R.TORO,R.BHOSLE,N.F.AL OBAIDI,L.L.MORISCO,S.R.WASSERMAN, AUTHOR 2 S.SOJITRA,E.WASHINGTON,A.SCOTT GLENN,S.CHOWDHURY,B.EVANS,J.HAMMONDS, AUTHOR 3 B.HILLERICH,J.LOVE,R.D.SEIDEL,H.J.IMKER,M.STEAD,J.A.GERLT,S.C.ALMO, AUTHOR 4 ENZYME FUNCTION INITIATIVE (EFI) REVDAT 4 20-SEP-23 4LLT 1 REMARK SEQADV LINK REVDAT 3 31-JAN-18 4LLT 1 AUTHOR REVDAT 2 15-NOV-17 4LLT 1 REMARK REVDAT 1 24-JUL-13 4LLT 0 JRNL AUTH J.KIM,R.TORO,R.BHOSLE,N.F.AL OBAIDI,L.L.MORISCO, JRNL AUTH 2 S.R.WASSERMAN,S.SOJITRA,E.WASHINGTON,A.SCOTT GLENN, JRNL AUTH 3 S.CHOWDHURY,B.EVANS,J.HAMMONDS,B.HILLERICH,J.LOVE, JRNL AUTH 4 R.D.SEIDEL,H.J.IMKER,M.STEAD,J.A.GERLT,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF A FARNESYL DIPHOSPHATE SYNTHASE FROM JRNL TITL 2 ROSEOBACTER DENITRIFICANS OCH 114, TARGET EFI-509393, WITH JRNL TITL 3 TWO IPP AND CALCIUM BOUND IN ACTIVE SITE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.55 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.55 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 26.46 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 3 NUMBER OF REFLECTIONS : 74260 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3896 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.55 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.59 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5288 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.62 REMARK 3 BIN R VALUE (WORKING SET) : 0.2810 REMARK 3 BIN FREE R VALUE SET COUNT : 300 REMARK 3 BIN FREE R VALUE : 0.3090 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4335 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 62 REMARK 3 SOLVENT ATOMS : 326 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.31 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.23000 REMARK 3 B22 (A**2) : -0.22000 REMARK 3 B33 (A**2) : 0.27000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.31000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.081 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.082 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.051 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.407 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.963 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4449 ; 0.014 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4307 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6043 ; 1.516 ; 1.967 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9827 ; 0.976 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 588 ; 5.233 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 181 ;32.573 ;23.591 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 699 ;13.777 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 35 ;18.102 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 706 ; 0.101 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5118 ; 0.013 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 997 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2358 ; 2.072 ; 1.800 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2357 ; 2.071 ; 1.800 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2944 ; 2.842 ; 2.695 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2945 ; 2.841 ; 2.696 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2091 ; 3.676 ; 2.139 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2092 ; 3.675 ; 2.139 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3100 ; 5.229 ; 3.069 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5541 ; 5.871 ;15.269 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5396 ; 5.844 ;15.045 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A 0 288 B 0 288 16190 0.12 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4LLT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JUL-13. REMARK 100 THE DEPOSITION ID IS D_1000080790. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : DIAMOND(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 78181 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.550 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.55 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.58 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.68400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 3LVS REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M CALCIUM ACETATE, 0.1 M MES/NAOH, REMARK 280 PH 6, 20% V/V PEG8000, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K, PH 6.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 41.55850 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21220 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -116.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 SER A -14 REMARK 465 SER A -13 REMARK 465 GLY A -12 REMARK 465 VAL A -11 REMARK 465 MET B -21 REMARK 465 HIS B -20 REMARK 465 HIS B -19 REMARK 465 HIS B -18 REMARK 465 HIS B -17 REMARK 465 HIS B -16 REMARK 465 HIS B -15 REMARK 465 SER B -14 REMARK 465 SER B -13 REMARK 465 GLY B -12 REMARK 465 VAL B -11 REMARK 465 ASP B -10 REMARK 465 LEU B -9 REMARK 465 GLY B -8 REMARK 465 THR B -7 REMARK 465 GLU B -6 REMARK 465 ASN B -5 REMARK 465 LEU B -4 REMARK 465 TYR B -3 REMARK 465 PHE B -2 REMARK 465 GLN B -1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A -10 CG OD1 OD2 REMARK 470 SER B 0 OG REMARK 470 ARG B 163 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 224 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 85 -107.61 -108.84 REMARK 500 TRP A 101 -101.95 -115.66 REMARK 500 MET B 85 -111.59 -109.11 REMARK 500 TRP B 101 -110.58 -108.46 REMARK 500 SER B 127 141.23 -171.45 REMARK 500 GLU B 160 -39.85 -34.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 304 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 80 OD2 REMARK 620 2 ASP A 86 OD2 88.5 REMARK 620 3 IPE A 302 O2A 94.2 93.3 REMARK 620 4 IPE A 302 O1B 104.7 166.0 81.3 REMARK 620 5 HOH A 462 O 83.0 98.1 168.1 88.2 REMARK 620 6 HOH A 538 O 163.9 84.6 100.8 83.7 83.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 305 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 86 OD1 REMARK 620 2 ASP A 86 OD2 48.3 REMARK 620 3 ASP A 156 OD2 153.6 156.7 REMARK 620 4 GLU A 160 OE1 84.4 130.8 72.4 REMARK 620 5 HOH A 457 O 119.7 77.8 85.4 128.4 REMARK 620 6 HOH A 464 O 107.7 74.9 85.5 144.1 75.5 REMARK 620 7 HOH A 527 O 58.4 75.1 109.2 92.6 138.9 68.0 REMARK 620 8 HOH A 528 O 80.8 92.3 99.2 63.2 75.9 150.5 135.0 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 303 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 216 OD1 REMARK 620 2 IPE A 302 O2B 108.9 REMARK 620 3 IPE A 302 O1A 88.2 77.1 REMARK 620 4 HOH A 458 O 80.6 92.6 161.5 REMARK 620 5 HOH A 472 O 158.2 87.2 110.3 84.0 REMARK 620 6 HOH A 489 O 86.7 164.3 102.3 91.8 78.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 303 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 80 OD2 REMARK 620 2 ASP B 86 OD2 85.9 REMARK 620 3 IPE B 302 O2B 106.7 164.4 REMARK 620 4 IPE B 302 O1A 93.6 89.2 81.1 REMARK 620 5 HOH B 497 O 81.3 102.0 89.2 167.2 REMARK 620 6 HOH B 537 O 148.7 79.7 93.0 113.7 74.8 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 305 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 86 OD1 REMARK 620 2 ASP B 86 OD2 48.6 REMARK 620 3 ASP B 156 OD2 161.2 150.1 REMARK 620 4 HOH B 519 O 113.6 71.9 81.7 REMARK 620 5 HOH B 520 O 61.5 71.4 118.2 128.9 REMARK 620 6 HOH B 521 O 79.5 127.8 82.0 150.5 80.6 REMARK 620 7 HOH B 539 O 112.7 80.7 80.2 77.7 62.3 123.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 304 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 216 OD2 REMARK 620 2 IPE B 302 O1B 108.7 REMARK 620 3 IPE B 302 O2A 90.3 77.1 REMARK 620 4 HOH B 443 O 82.7 168.7 103.4 REMARK 620 5 HOH B 451 O 78.9 90.2 159.9 92.1 REMARK 620 6 HOH B 514 O 156.7 86.4 110.8 82.8 83.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPE A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPE A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPE B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPE B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 305 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4LLS RELATED DB: PDB REMARK 900 FARNESYL DIPHOSPHATE SYNTHASE WITH IPP AND GSPP BOUND REMARK 900 RELATED ID: EFI-509393 RELATED DB: TARGETTRACK DBREF 4LLT A 1 289 UNP Q16CN9 Q16CN9_ROSDO 1 289 DBREF 4LLT B 1 289 UNP Q16CN9 Q16CN9_ROSDO 1 289 SEQADV 4LLT MET A -21 UNP Q16CN9 EXPRESSION TAG SEQADV 4LLT HIS A -20 UNP Q16CN9 EXPRESSION TAG SEQADV 4LLT HIS A -19 UNP Q16CN9 EXPRESSION TAG SEQADV 4LLT HIS A -18 UNP Q16CN9 EXPRESSION TAG SEQADV 4LLT HIS A -17 UNP Q16CN9 EXPRESSION TAG SEQADV 4LLT HIS A -16 UNP Q16CN9 EXPRESSION TAG SEQADV 4LLT HIS A -15 UNP Q16CN9 EXPRESSION TAG SEQADV 4LLT SER A -14 UNP Q16CN9 EXPRESSION TAG SEQADV 4LLT SER A -13 UNP Q16CN9 EXPRESSION TAG SEQADV 4LLT GLY A -12 UNP Q16CN9 EXPRESSION TAG SEQADV 4LLT VAL A -11 UNP Q16CN9 EXPRESSION TAG SEQADV 4LLT ASP A -10 UNP Q16CN9 EXPRESSION TAG SEQADV 4LLT LEU A -9 UNP Q16CN9 EXPRESSION TAG SEQADV 4LLT GLY A -8 UNP Q16CN9 EXPRESSION TAG SEQADV 4LLT THR A -7 UNP Q16CN9 EXPRESSION TAG SEQADV 4LLT GLU A -6 UNP Q16CN9 EXPRESSION TAG SEQADV 4LLT ASN A -5 UNP Q16CN9 EXPRESSION TAG SEQADV 4LLT LEU A -4 UNP Q16CN9 EXPRESSION TAG SEQADV 4LLT TYR A -3 UNP Q16CN9 EXPRESSION TAG SEQADV 4LLT PHE A -2 UNP Q16CN9 EXPRESSION TAG SEQADV 4LLT GLN A -1 UNP Q16CN9 EXPRESSION TAG SEQADV 4LLT SER A 0 UNP Q16CN9 EXPRESSION TAG SEQADV 4LLT MET B -21 UNP Q16CN9 EXPRESSION TAG SEQADV 4LLT HIS B -20 UNP Q16CN9 EXPRESSION TAG SEQADV 4LLT HIS B -19 UNP Q16CN9 EXPRESSION TAG SEQADV 4LLT HIS B -18 UNP Q16CN9 EXPRESSION TAG SEQADV 4LLT HIS B -17 UNP Q16CN9 EXPRESSION TAG SEQADV 4LLT HIS B -16 UNP Q16CN9 EXPRESSION TAG SEQADV 4LLT HIS B -15 UNP Q16CN9 EXPRESSION TAG SEQADV 4LLT SER B -14 UNP Q16CN9 EXPRESSION TAG SEQADV 4LLT SER B -13 UNP Q16CN9 EXPRESSION TAG SEQADV 4LLT GLY B -12 UNP Q16CN9 EXPRESSION TAG SEQADV 4LLT VAL B -11 UNP Q16CN9 EXPRESSION TAG SEQADV 4LLT ASP B -10 UNP Q16CN9 EXPRESSION TAG SEQADV 4LLT LEU B -9 UNP Q16CN9 EXPRESSION TAG SEQADV 4LLT GLY B -8 UNP Q16CN9 EXPRESSION TAG SEQADV 4LLT THR B -7 UNP Q16CN9 EXPRESSION TAG SEQADV 4LLT GLU B -6 UNP Q16CN9 EXPRESSION TAG SEQADV 4LLT ASN B -5 UNP Q16CN9 EXPRESSION TAG SEQADV 4LLT LEU B -4 UNP Q16CN9 EXPRESSION TAG SEQADV 4LLT TYR B -3 UNP Q16CN9 EXPRESSION TAG SEQADV 4LLT PHE B -2 UNP Q16CN9 EXPRESSION TAG SEQADV 4LLT GLN B -1 UNP Q16CN9 EXPRESSION TAG SEQADV 4LLT SER B 0 UNP Q16CN9 EXPRESSION TAG SEQRES 1 A 311 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 311 GLY THR GLU ASN LEU TYR PHE GLN SER MET PHE THR GLN SEQRES 3 A 311 ARG LEU ASP ALA ALA ALA ALA ALA VAL GLN ALA HIS PHE SEQRES 4 A 311 ASP LYS VAL LEU ALA ALA PHE GLU PRO LEU PRO ILE VAL SEQRES 5 A 311 GLU ALA MET ALA HIS ALA THR SER GLY GLY LYS ARG LEU SEQRES 6 A 311 ARG GLY PHE LEU VAL LEU GLU THR ALA ARG LEU HIS ASP SEQRES 7 A 311 ILE ALA ALA GLY GLU ALA ILE TRP SER ALA THR ALA ILE SEQRES 8 A 311 GLU ALA LEU HIS ALA TYR SER LEU VAL HIS ASP ASP LEU SEQRES 9 A 311 PRO CYS MET ASP ASN ASP ASP MET ARG ARG GLY GLN PRO SEQRES 10 A 311 THR VAL HIS LYS LYS TRP ASP ASP ALA THR ALA VAL LEU SEQRES 11 A 311 ALA GLY ASP ALA LEU GLN THR LEU ALA PHE GLU LEU VAL SEQRES 12 A 311 THR HIS PRO GLY ALA SER ALA SER ALA GLU VAL ARG ALA SEQRES 13 A 311 ASP LEU ALA LEU SER LEU ALA ARG ALA SER GLY ALA GLN SEQRES 14 A 311 GLY MET VAL LEU GLY GLN ALA LEU ASP ILE ALA ALA GLU SEQRES 15 A 311 THR ALA ARG ALA PRO LEU SER LEU ASP GLU ILE THR ARG SEQRES 16 A 311 LEU GLN GLN GLY LYS THR GLY ALA LEU ILE GLY TRP SER SEQRES 17 A 311 ALA GLN ALA GLY ALA ARG LEU ALA GLN ALA ASP THR ALA SEQRES 18 A 311 ALA LEU LYS ARG TYR ALA GLN ALA LEU GLY LEU ALA PHE SEQRES 19 A 311 GLN ILE ALA ASP ASP ILE LEU ASP VAL THR GLY ASP SER SEQRES 20 A 311 ALA GLN VAL GLY LYS ALA VAL GLY LYS ASP ALA SER ALA SEQRES 21 A 311 GLY LYS ALA THR PHE VAL SER LEU LEU GLY LEU ASP ALA SEQRES 22 A 311 ALA ARG ALA ARG ALA MET SER LEU ILE ASP GLU ALA CYS SEQRES 23 A 311 ASP SER LEU ALA THR TYR GLY ALA LYS ALA ASP THR LEU SEQRES 24 A 311 ARG GLU THR ALA ARG PHE VAL VAL ARG ARG THR HIS SEQRES 1 B 311 MET HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 B 311 GLY THR GLU ASN LEU TYR PHE GLN SER MET PHE THR GLN SEQRES 3 B 311 ARG LEU ASP ALA ALA ALA ALA ALA VAL GLN ALA HIS PHE SEQRES 4 B 311 ASP LYS VAL LEU ALA ALA PHE GLU PRO LEU PRO ILE VAL SEQRES 5 B 311 GLU ALA MET ALA HIS ALA THR SER GLY GLY LYS ARG LEU SEQRES 6 B 311 ARG GLY PHE LEU VAL LEU GLU THR ALA ARG LEU HIS ASP SEQRES 7 B 311 ILE ALA ALA GLY GLU ALA ILE TRP SER ALA THR ALA ILE SEQRES 8 B 311 GLU ALA LEU HIS ALA TYR SER LEU VAL HIS ASP ASP LEU SEQRES 9 B 311 PRO CYS MET ASP ASN ASP ASP MET ARG ARG GLY GLN PRO SEQRES 10 B 311 THR VAL HIS LYS LYS TRP ASP ASP ALA THR ALA VAL LEU SEQRES 11 B 311 ALA GLY ASP ALA LEU GLN THR LEU ALA PHE GLU LEU VAL SEQRES 12 B 311 THR HIS PRO GLY ALA SER ALA SER ALA GLU VAL ARG ALA SEQRES 13 B 311 ASP LEU ALA LEU SER LEU ALA ARG ALA SER GLY ALA GLN SEQRES 14 B 311 GLY MET VAL LEU GLY GLN ALA LEU ASP ILE ALA ALA GLU SEQRES 15 B 311 THR ALA ARG ALA PRO LEU SER LEU ASP GLU ILE THR ARG SEQRES 16 B 311 LEU GLN GLN GLY LYS THR GLY ALA LEU ILE GLY TRP SER SEQRES 17 B 311 ALA GLN ALA GLY ALA ARG LEU ALA GLN ALA ASP THR ALA SEQRES 18 B 311 ALA LEU LYS ARG TYR ALA GLN ALA LEU GLY LEU ALA PHE SEQRES 19 B 311 GLN ILE ALA ASP ASP ILE LEU ASP VAL THR GLY ASP SER SEQRES 20 B 311 ALA GLN VAL GLY LYS ALA VAL GLY LYS ASP ALA SER ALA SEQRES 21 B 311 GLY LYS ALA THR PHE VAL SER LEU LEU GLY LEU ASP ALA SEQRES 22 B 311 ALA ARG ALA ARG ALA MET SER LEU ILE ASP GLU ALA CYS SEQRES 23 B 311 ASP SER LEU ALA THR TYR GLY ALA LYS ALA ASP THR LEU SEQRES 24 B 311 ARG GLU THR ALA ARG PHE VAL VAL ARG ARG THR HIS HET IPE A 301 14 HET IPE A 302 14 HET CA A 303 1 HET CA A 304 1 HET CA A 305 1 HET IPE B 301 14 HET IPE B 302 14 HET CA B 303 1 HET CA B 304 1 HET CA B 305 1 HETNAM IPE 3-METHYLBUT-3-ENYL TRIHYDROGEN DIPHOSPHATE HETNAM CA CALCIUM ION HETSYN IPE ISOPENTENYL PYROPHOSPHATE FORMUL 3 IPE 4(C5 H12 O7 P2) FORMUL 5 CA 6(CA 2+) FORMUL 13 HOH *326(H2 O) HELIX 1 1 THR A -7 TYR A -3 5 5 HELIX 2 2 GLN A -1 ALA A 22 1 24 HELIX 3 3 LEU A 27 SER A 38 1 12 HELIX 4 4 ARG A 42 HIS A 55 1 14 HELIX 5 5 ALA A 58 LEU A 82 1 25 HELIX 6 6 THR A 96 TRP A 101 1 6 HELIX 7 7 ASP A 102 HIS A 123 1 22 HELIX 8 8 PRO A 124 SER A 127 5 4 HELIX 9 9 SER A 129 GLY A 145 1 17 HELIX 10 10 GLY A 148 ARG A 163 1 16 HELIX 11 11 SER A 167 THR A 179 1 13 HELIX 12 12 THR A 179 ALA A 194 1 16 HELIX 13 13 THR A 198 GLY A 223 1 26 HELIX 14 14 ASP A 224 GLY A 229 1 6 HELIX 15 15 GLY A 233 ALA A 238 1 6 HELIX 16 16 THR A 242 GLY A 248 1 7 HELIX 17 17 GLY A 248 LEU A 267 1 20 HELIX 18 18 ALA A 268 LYS A 273 5 6 HELIX 19 19 ALA A 274 ARG A 287 1 14 HELIX 20 20 MET B 1 ALA B 23 1 23 HELIX 21 21 LEU B 27 SER B 38 1 12 HELIX 22 22 ARG B 42 HIS B 55 1 14 HELIX 23 23 ALA B 58 ASP B 81 1 24 HELIX 24 24 THR B 96 TRP B 101 1 6 HELIX 25 25 ASP B 102 HIS B 123 1 22 HELIX 26 26 PRO B 124 SER B 127 5 4 HELIX 27 27 SER B 129 GLY B 145 1 17 HELIX 28 28 GLY B 148 THR B 161 1 14 HELIX 29 29 SER B 167 THR B 179 1 13 HELIX 30 30 THR B 179 ALA B 194 1 16 HELIX 31 31 THR B 198 GLY B 223 1 26 HELIX 32 32 ASP B 224 GLY B 229 1 6 HELIX 33 33 GLY B 233 ALA B 238 1 6 HELIX 34 34 THR B 242 GLY B 248 1 7 HELIX 35 35 GLY B 248 LEU B 267 1 20 HELIX 36 36 ALA B 268 LYS B 273 5 6 HELIX 37 37 ALA B 274 ARG B 287 1 14 SHEET 1 A 2 MET A 90 ARG A 91 0 SHEET 2 A 2 GLN A 94 PRO A 95 -1 O GLN A 94 N ARG A 91 SHEET 1 B 2 MET B 90 ARG B 91 0 SHEET 2 B 2 GLN B 94 PRO B 95 -1 O GLN B 94 N ARG B 91 LINK OD2 ASP A 80 CA CA A 304 1555 1555 2.25 LINK OD2 ASP A 86 CA CA A 304 1555 1555 2.30 LINK OD1 ASP A 86 CA CA A 305 1555 1555 2.60 LINK OD2 ASP A 86 CA CA A 305 1555 1555 2.75 LINK OD2 ASP A 156 CA CA A 305 1555 1555 2.39 LINK OE1 GLU A 160 CA CA A 305 1555 1555 2.58 LINK OD1 ASP A 216 CA CA A 303 1555 1555 2.25 LINK O2B IPE A 302 CA CA A 303 1555 1555 2.26 LINK O1A IPE A 302 CA CA A 303 1555 1555 2.54 LINK O2A IPE A 302 CA CA A 304 1555 1555 2.26 LINK O1B IPE A 302 CA CA A 304 1555 1555 2.27 LINK CA CA A 303 O HOH A 458 1555 1555 2.49 LINK CA CA A 303 O HOH A 472 1555 1555 2.38 LINK CA CA A 303 O HOH A 489 1555 1555 2.31 LINK CA CA A 304 O HOH A 462 1555 1555 2.48 LINK CA CA A 304 O HOH A 538 1555 1555 2.26 LINK CA CA A 305 O HOH A 457 1555 1555 2.33 LINK CA CA A 305 O HOH A 464 1555 1555 2.43 LINK CA CA A 305 O HOH A 527 1555 1555 2.39 LINK CA CA A 305 O HOH A 528 1555 1555 2.48 LINK OD2 ASP B 80 CA CA B 303 1555 1555 2.33 LINK OD2 ASP B 86 CA CA B 303 1555 1555 2.35 LINK OD1 ASP B 86 CA CA B 305 1555 1555 2.57 LINK OD2 ASP B 86 CA CA B 305 1555 1555 2.73 LINK OD2 ASP B 156 CA CA B 305 1555 1555 2.39 LINK OD2 ASP B 216 CA CA B 304 1555 1555 2.36 LINK O2B IPE B 302 CA CA B 303 1555 1555 2.25 LINK O1A IPE B 302 CA CA B 303 1555 1555 2.26 LINK O1B IPE B 302 CA CA B 304 1555 1555 2.23 LINK O2A IPE B 302 CA CA B 304 1555 1555 2.44 LINK CA CA B 303 O HOH B 497 1555 1555 2.43 LINK CA CA B 303 O HOH B 537 1555 1555 2.33 LINK CA CA B 304 O HOH B 443 1555 1555 2.39 LINK CA CA B 304 O HOH B 451 1555 1555 2.44 LINK CA CA B 304 O HOH B 514 1555 1555 2.34 LINK CA CA B 305 O HOH B 519 1555 1555 2.28 LINK CA CA B 305 O HOH B 520 1555 1555 2.08 LINK CA CA B 305 O HOH B 521 1555 1555 2.26 LINK CA CA B 305 O HOH B 539 1555 1555 2.50 SITE 1 AC1 16 GLY A 40 LYS A 41 ARG A 44 HIS A 73 SITE 2 AC1 16 LEU A 77 ARG A 92 THR A 179 PHE A 212 SITE 3 AC1 16 ASP A 216 IPE A 302 HOH A 404 HOH A 409 SITE 4 AC1 16 HOH A 410 HOH A 423 HOH A 424 HOH A 436 SITE 1 AC2 16 SER A 76 ASP A 80 ASP A 86 ARG A 91 SITE 2 AC2 16 MET A 149 LYS A 178 ASP A 216 LYS A 230 SITE 3 AC2 16 IPE A 301 CA A 303 CA A 304 HOH A 457 SITE 4 AC2 16 HOH A 464 HOH A 537 HOH A 538 HOH A 540 SITE 1 AC3 5 ASP A 216 IPE A 302 HOH A 458 HOH A 472 SITE 2 AC3 5 HOH A 489 SITE 1 AC4 5 ASP A 80 ASP A 86 IPE A 302 HOH A 462 SITE 2 AC4 5 HOH A 538 SITE 1 AC5 7 ASP A 86 ASP A 156 GLU A 160 HOH A 457 SITE 2 AC5 7 HOH A 464 HOH A 527 HOH A 528 SITE 1 AC6 16 GLY B 40 LYS B 41 ARG B 44 HIS B 73 SITE 2 AC6 16 LEU B 77 ARG B 92 THR B 179 PHE B 212 SITE 3 AC6 16 ASP B 216 IPE B 302 HOH B 410 HOH B 420 SITE 4 AC6 16 HOH B 430 HOH B 439 HOH B 446 HOH B 456 SITE 1 AC7 14 LEU B 77 ASP B 80 ASP B 86 ARG B 91 SITE 2 AC7 14 LYS B 178 ASP B 216 LYS B 230 IPE B 301 SITE 3 AC7 14 CA B 303 CA B 304 HOH B 519 HOH B 538 SITE 4 AC7 14 HOH B 545 HOH B 546 SITE 1 AC8 5 ASP B 80 ASP B 86 IPE B 302 HOH B 497 SITE 2 AC8 5 HOH B 537 SITE 1 AC9 5 ASP B 216 IPE B 302 HOH B 443 HOH B 451 SITE 2 AC9 5 HOH B 514 SITE 1 BC1 6 ASP B 86 ASP B 156 HOH B 519 HOH B 520 SITE 2 BC1 6 HOH B 521 HOH B 539 CRYST1 50.899 83.117 71.332 90.00 108.95 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019647 0.000000 0.006746 0.00000 SCALE2 0.000000 0.012031 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014822 0.00000