HEADER IMMUNE SYSTEM 09-JUL-13 4LLU TITLE STRUCTURE OF PERTUZUMAB FAB WITH LIGHT CHAIN CLAMBDA AT 2.16A COMPND MOL_ID: 1; COMPND 2 MOLECULE: PERTUZUMAB FAB HEAVY CHAIN; COMPND 3 CHAIN: A, C; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: LIGHT CHAIN CLAMBDA; COMPND 7 CHAIN: B, D; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 7 EXPRESSION_SYSTEM_CELL_LINE: HEK293; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 10 ORGANISM_COMMON: HUMAN; SOURCE 11 ORGANISM_TAXID: 9606; SOURCE 12 EXPRESSION_SYSTEM: HOMO SAPIENS; SOURCE 13 EXPRESSION_SYSTEM_TAXID: 9606; SOURCE 14 EXPRESSION_SYSTEM_CELL_LINE: HEK293 KEYWDS FAB, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR A.PUSTILNIK,S.M.LEWIS,X.WU,A.SERENO,F.HUANG,G.GUNTAS,A.LEAVER-FAY, AUTHOR 2 E.M.SMITH,C.HO,C.HANSEN-ESTRUCH,A.K.CHAMBERLAIN,S.M.TRUHLAR, AUTHOR 3 B.KUHLMAN,S.J.DEMAREST,S.ATWELL REVDAT 5 20-SEP-23 4LLU 1 REMARK REVDAT 4 15-NOV-17 4LLU 1 REMARK REVDAT 3 26-MAR-14 4LLU 1 JRNL REVDAT 2 12-FEB-14 4LLU 1 JRNL REVDAT 1 29-JAN-14 4LLU 0 JRNL AUTH S.M.LEWIS,X.WU,A.PUSTILNIK,A.SERENO,F.HUANG,H.L.RICK, JRNL AUTH 2 G.GUNTAS,A.LEAVER-FAY,E.M.SMITH,C.HO,C.HANSEN-ESTRUCH, JRNL AUTH 3 A.K.CHAMBERLAIN,S.M.TRUHLAR,E.M.CONNER,S.ATWELL,B.KUHLMAN, JRNL AUTH 4 S.J.DEMAREST JRNL TITL GENERATION OF BISPECIFIC IGG ANTIBODIES BY STRUCTURE-BASED JRNL TITL 2 DESIGN OF AN ORTHOGONAL FAB INTERFACE. JRNL REF NAT.BIOTECHNOL. V. 32 191 2014 JRNL REFN ISSN 1087-0156 JRNL PMID 24463572 JRNL DOI 10.1038/NBT.2797 REMARK 2 REMARK 2 RESOLUTION. 2.16 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.16 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 49395 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.225 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.273 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2654 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.16 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.22 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3483 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3030 REMARK 3 BIN FREE R VALUE SET COUNT : 174 REMARK 3 BIN FREE R VALUE : 0.3690 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6438 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 19 REMARK 3 SOLVENT ATOMS : 245 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.98 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.42000 REMARK 3 B22 (A**2) : 0.25000 REMARK 3 B33 (A**2) : -0.73000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.21000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.266 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.221 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.158 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.206 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.907 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.865 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6631 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9057 ; 1.328 ; 1.956 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 851 ; 6.765 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 248 ;35.887 ;24.274 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 991 ;16.523 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 21 ;10.369 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1016 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5023 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4267 ; 1.655 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6898 ; 3.045 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2364 ; 5.032 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2159 ; 7.356 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4LLU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-JUL-13. REMARK 100 THE DEPOSITION ID IS D_1000080791. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 07-OCT-12 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : .97931 REMARK 200 MONOCHROMATOR : DIAMOND (111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 52049 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.160 REMARK 200 RESOLUTION RANGE LOW (A) : 19.902 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.17500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.16 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.67000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1S78 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.71 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM SODIUM ACETATE PH 4.5 + 10% MPD REMARK 280 + 30% PEG 2000 MME + 200MM AMMONIUM SULFATE, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 105.01200 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.86950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 105.01200 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 34.86950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19260 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -49.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 215 REMARK 465 CYS A 216 REMARK 465 ASP A 217 REMARK 465 LYS A 218 REMARK 465 THR A 219 REMARK 465 HIS A 220 REMARK 465 THR A 221 REMARK 465 GLU B 211 REMARK 465 CYS B 212 REMARK 465 SER C 215 REMARK 465 CYS C 216 REMARK 465 ASP C 217 REMARK 465 LYS C 218 REMARK 465 THR C 219 REMARK 465 HIS C 220 REMARK 465 THR C 221 REMARK 465 LYS D 107 REMARK 465 GLY D 108 REMARK 465 GLN D 109 REMARK 465 THR D 210 REMARK 465 GLU D 211 REMARK 465 CYS D 212 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 SER B 12 OG REMARK 470 LYS B 167 CD CE NZ REMARK 470 LYS B 187 CE NZ REMARK 470 LYS C 64 CG CD CE NZ REMARK 470 LEU D 11 CG CD1 CD2 REMARK 470 SER D 12 OG REMARK 470 VAL D 15 CG1 CG2 REMARK 470 ARG D 18 CG CD NE CZ NH1 NH2 REMARK 470 ILE D 21 CG1 CG2 CD1 REMARK 470 LYS D 24 CG CD CE NZ REMARK 470 SER D 60 OG REMARK 470 ILE D 106 CG1 CG2 CD1 REMARK 470 LYS D 157 CG CD CE NZ REMARK 470 LYS D 167 CD CE NZ REMARK 470 LYS D 187 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 76 51.93 36.38 REMARK 500 PHE A 99A 51.38 -91.63 REMARK 500 SER B 30 -119.39 62.65 REMARK 500 PRO B 40 123.04 -33.77 REMARK 500 ALA B 51 -33.47 70.00 REMARK 500 ALA B 84 -174.99 -178.84 REMARK 500 TYR B 94 133.11 -37.09 REMARK 500 PRO B 95 34.98 -96.52 REMARK 500 ASP B 152 -112.57 47.45 REMARK 500 ARG C 62 -5.72 -57.11 REMARK 500 SER C 82B 65.72 26.67 REMARK 500 ALA C 84 -36.11 -38.02 REMARK 500 PHE C 99A 45.72 -97.75 REMARK 500 SER D 10 147.78 -172.76 REMARK 500 VAL D 15 101.78 -56.00 REMARK 500 SER D 30 -108.31 50.90 REMARK 500 LEU D 47 -64.04 -98.47 REMARK 500 ALA D 51 -16.66 64.79 REMARK 500 SER D 52 -22.73 -140.25 REMARK 500 ALA D 84 -164.90 -178.51 REMARK 500 TYR D 96 60.83 64.00 REMARK 500 ASP D 152 -111.27 52.20 REMARK 500 GLU D 199 -113.97 51.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1S78 RELATED DB: PDB REMARK 900 ERBB2-PERTUZUMAB COMPLEX REMARK 900 RELATED ID: 4LLD RELATED DB: PDB REMARK 900 WILD-TYPE CH1-CLAMBDA REMARK 900 RELATED ID: 4LLM RELATED DB: PDB REMARK 900 RELATED ID: 4LLQ RELATED DB: PDB REMARK 900 RELATED ID: 4LLW RELATED DB: PDB REMARK 900 RELATED ID: 4LLY RELATED DB: PDB DBREF 4LLU A 1 221 PDB 4LLU 4LLU 1 221 DBREF 4LLU C 1 221 PDB 4LLU 4LLU 1 221 DBREF 4LLU B 1 212 PDB 4LLU 4LLU 1 212 DBREF 4LLU D 1 212 PDB 4LLU 4LLU 1 212 SEQRES 1 A 227 GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 A 227 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 A 227 PHE THR PHE THR ASP TYR THR MET ASP TRP VAL ARG GLN SEQRES 4 A 227 ALA PRO GLY LYS GLY LEU GLU TRP VAL ALA ASP VAL ASN SEQRES 5 A 227 PRO ASN SER GLY GLY SER ILE TYR ASN GLN ARG PHE LYS SEQRES 6 A 227 GLY ARG PHE THR LEU SER VAL ASP ARG SER LYS ASN THR SEQRES 7 A 227 LEU TYR LEU GLN MET ASN SER LEU ARG ALA GLU ASP THR SEQRES 8 A 227 ALA VAL TYR TYR CYS ALA ARG ASN LEU GLY PRO SER PHE SEQRES 9 A 227 TYR PHE ASP TYR TRP GLY GLN GLY THR LEU VAL THR VAL SEQRES 10 A 227 SER SER ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU SEQRES 11 A 227 ALA PRO SER SER LYS SER THR SER GLY GLY THR ALA ALA SEQRES 12 A 227 LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL SEQRES 13 A 227 THR VAL SER TRP ASN SER GLY ALA LEU THR SER GLY VAL SEQRES 14 A 227 HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SEQRES 15 A 227 SER LEU SER SER VAL VAL THR VAL PRO SER SER SER LEU SEQRES 16 A 227 GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SEQRES 17 A 227 SER ASN THR LYS VAL ASP LYS LYS VAL GLU PRO LYS SER SEQRES 18 A 227 CYS ASP LYS THR HIS THR SEQRES 1 B 212 ASP ILE GLN MET THR GLN SER PRO SER SER LEU SER ALA SEQRES 2 B 212 SER VAL GLY ASP ARG VAL THR ILE THR CYS LYS ALA SER SEQRES 3 B 212 GLN ASP VAL SER ILE GLY VAL ALA TRP TYR GLN GLN LYS SEQRES 4 B 212 PRO GLY LYS ALA PRO LYS LEU LEU ILE TYR SER ALA SER SEQRES 5 B 212 TYR ARG TYR THR GLY VAL PRO SER ARG PHE SER GLY SER SEQRES 6 B 212 GLY SER GLY THR ASP PHE THR LEU THR ILE SER SER LEU SEQRES 7 B 212 GLN PRO GLU ASP PHE ALA THR TYR TYR CYS GLN GLN TYR SEQRES 8 B 212 TYR ILE TYR PRO TYR THR PHE GLY GLN GLY THR LYS VAL SEQRES 9 B 212 GLU ILE LYS GLY GLN PRO LYS ALA ALA PRO SER VAL THR SEQRES 10 B 212 LEU PHE PRO PRO SER SER GLU GLU LEU GLN ALA ASN LYS SEQRES 11 B 212 ALA THR LEU VAL CYS LEU ILE SER ASP PHE TYR PRO GLY SEQRES 12 B 212 ALA VAL THR VAL ALA TRP LYS ALA ASP SER SER PRO VAL SEQRES 13 B 212 LYS ALA GLY VAL GLU THR THR THR PRO SER LYS GLN SER SEQRES 14 B 212 ASN ASN LYS TYR ALA ALA SER SER TYR LEU SER LEU THR SEQRES 15 B 212 PRO GLU GLN TRP LYS SER HIS ARG SER TYR SER CYS GLN SEQRES 16 B 212 VAL THR HIS GLU GLY SER THR VAL GLU LYS THR VAL ALA SEQRES 17 B 212 PRO THR GLU CYS SEQRES 1 C 227 GLU VAL GLN LEU VAL GLU SER GLY GLY GLY LEU VAL GLN SEQRES 2 C 227 PRO GLY GLY SER LEU ARG LEU SER CYS ALA ALA SER GLY SEQRES 3 C 227 PHE THR PHE THR ASP TYR THR MET ASP TRP VAL ARG GLN SEQRES 4 C 227 ALA PRO GLY LYS GLY LEU GLU TRP VAL ALA ASP VAL ASN SEQRES 5 C 227 PRO ASN SER GLY GLY SER ILE TYR ASN GLN ARG PHE LYS SEQRES 6 C 227 GLY ARG PHE THR LEU SER VAL ASP ARG SER LYS ASN THR SEQRES 7 C 227 LEU TYR LEU GLN MET ASN SER LEU ARG ALA GLU ASP THR SEQRES 8 C 227 ALA VAL TYR TYR CYS ALA ARG ASN LEU GLY PRO SER PHE SEQRES 9 C 227 TYR PHE ASP TYR TRP GLY GLN GLY THR LEU VAL THR VAL SEQRES 10 C 227 SER SER ALA SER THR LYS GLY PRO SER VAL PHE PRO LEU SEQRES 11 C 227 ALA PRO SER SER LYS SER THR SER GLY GLY THR ALA ALA SEQRES 12 C 227 LEU GLY CYS LEU VAL LYS ASP TYR PHE PRO GLU PRO VAL SEQRES 13 C 227 THR VAL SER TRP ASN SER GLY ALA LEU THR SER GLY VAL SEQRES 14 C 227 HIS THR PHE PRO ALA VAL LEU GLN SER SER GLY LEU TYR SEQRES 15 C 227 SER LEU SER SER VAL VAL THR VAL PRO SER SER SER LEU SEQRES 16 C 227 GLY THR GLN THR TYR ILE CYS ASN VAL ASN HIS LYS PRO SEQRES 17 C 227 SER ASN THR LYS VAL ASP LYS LYS VAL GLU PRO LYS SER SEQRES 18 C 227 CYS ASP LYS THR HIS THR SEQRES 1 D 212 ASP ILE GLN MET THR GLN SER PRO SER SER LEU SER ALA SEQRES 2 D 212 SER VAL GLY ASP ARG VAL THR ILE THR CYS LYS ALA SER SEQRES 3 D 212 GLN ASP VAL SER ILE GLY VAL ALA TRP TYR GLN GLN LYS SEQRES 4 D 212 PRO GLY LYS ALA PRO LYS LEU LEU ILE TYR SER ALA SER SEQRES 5 D 212 TYR ARG TYR THR GLY VAL PRO SER ARG PHE SER GLY SER SEQRES 6 D 212 GLY SER GLY THR ASP PHE THR LEU THR ILE SER SER LEU SEQRES 7 D 212 GLN PRO GLU ASP PHE ALA THR TYR TYR CYS GLN GLN TYR SEQRES 8 D 212 TYR ILE TYR PRO TYR THR PHE GLY GLN GLY THR LYS VAL SEQRES 9 D 212 GLU ILE LYS GLY GLN PRO LYS ALA ALA PRO SER VAL THR SEQRES 10 D 212 LEU PHE PRO PRO SER SER GLU GLU LEU GLN ALA ASN LYS SEQRES 11 D 212 ALA THR LEU VAL CYS LEU ILE SER ASP PHE TYR PRO GLY SEQRES 12 D 212 ALA VAL THR VAL ALA TRP LYS ALA ASP SER SER PRO VAL SEQRES 13 D 212 LYS ALA GLY VAL GLU THR THR THR PRO SER LYS GLN SER SEQRES 14 D 212 ASN ASN LYS TYR ALA ALA SER SER TYR LEU SER LEU THR SEQRES 15 D 212 PRO GLU GLN TRP LYS SER HIS ARG SER TYR SER CYS GLN SEQRES 16 D 212 VAL THR HIS GLU GLY SER THR VAL GLU LYS THR VAL ALA SEQRES 17 D 212 PRO THR GLU CYS HET SO4 A 301 5 HET ACT B 301 4 HET SO4 C 301 5 HET SO4 D 301 5 HETNAM SO4 SULFATE ION HETNAM ACT ACETATE ION FORMUL 5 SO4 3(O4 S 2-) FORMUL 6 ACT C2 H3 O2 1- FORMUL 9 HOH *245(H2 O) HELIX 1 1 THR A 28 TYR A 32 5 5 HELIX 2 2 ARG A 73 LYS A 75 5 3 HELIX 3 3 ARG A 83 THR A 87 5 5 HELIX 4 4 SER A 156 ALA A 158 5 3 HELIX 5 5 LYS A 201 ASN A 204 5 4 HELIX 6 6 GLN B 79 PHE B 83 5 5 HELIX 7 7 SER B 122 ALA B 128 1 7 HELIX 8 8 THR B 182 SER B 188 1 7 HELIX 9 9 THR C 28 TYR C 32 5 5 HELIX 10 10 ARG C 83 THR C 87 5 5 HELIX 11 11 SER C 127 LYS C 129 5 3 HELIX 12 12 SER C 156 ALA C 158 5 3 HELIX 13 13 LYS C 201 ASN C 204 5 4 HELIX 14 14 SER D 122 ALA D 128 1 7 HELIX 15 15 THR D 182 HIS D 189 1 8 SHEET 1 A 4 GLN A 3 SER A 7 0 SHEET 2 A 4 LEU A 18 SER A 25 -1 O ALA A 23 N VAL A 5 SHEET 3 A 4 THR A 77 MET A 82 -1 O MET A 82 N LEU A 18 SHEET 4 A 4 PHE A 67 ASP A 72 -1 N SER A 70 O TYR A 79 SHEET 1 B 6 GLY A 10 VAL A 12 0 SHEET 2 B 6 THR A 107 VAL A 111 1 O THR A 110 N GLY A 10 SHEET 3 B 6 ALA A 88 LEU A 96 -1 N ALA A 88 O VAL A 109 SHEET 4 B 6 THR A 33 GLN A 39 -1 N VAL A 37 O TYR A 91 SHEET 5 B 6 LEU A 45 VAL A 51 -1 O GLU A 46 N ARG A 38 SHEET 6 B 6 SER A 57 TYR A 59 -1 O ILE A 58 N ASP A 50 SHEET 1 C 4 GLY A 10 VAL A 12 0 SHEET 2 C 4 THR A 107 VAL A 111 1 O THR A 110 N GLY A 10 SHEET 3 C 4 ALA A 88 LEU A 96 -1 N ALA A 88 O VAL A 109 SHEET 4 C 4 SER A 99 TRP A 103 -1 O TYR A 102 N ARG A 94 SHEET 1 D 4 SER A 120 SER A 127 0 SHEET 2 D 4 ALA A 136 TYR A 145 -1 O GLY A 139 N LEU A 124 SHEET 3 D 4 TYR A 176 VAL A 184 -1 O LEU A 178 N VAL A 142 SHEET 4 D 4 VAL A 163 THR A 165 -1 N HIS A 164 O VAL A 181 SHEET 1 E 4 SER A 120 SER A 127 0 SHEET 2 E 4 ALA A 136 TYR A 145 -1 O GLY A 139 N LEU A 124 SHEET 3 E 4 TYR A 176 VAL A 184 -1 O LEU A 178 N VAL A 142 SHEET 4 E 4 VAL A 169 LEU A 170 -1 N VAL A 169 O SER A 177 SHEET 1 F 3 THR A 151 TRP A 154 0 SHEET 2 F 3 ILE A 195 HIS A 200 -1 O ASN A 197 N SER A 153 SHEET 3 F 3 THR A 205 LYS A 210 -1 O VAL A 207 N VAL A 198 SHEET 1 G 4 MET B 4 SER B 7 0 SHEET 2 G 4 VAL B 19 ALA B 25 -1 O THR B 22 N SER B 7 SHEET 3 G 4 ASP B 70 ILE B 75 -1 O LEU B 73 N ILE B 21 SHEET 4 G 4 PHE B 62 SER B 67 -1 N SER B 63 O THR B 74 SHEET 1 H 6 SER B 10 ALA B 13 0 SHEET 2 H 6 THR B 102 ILE B 106 1 O LYS B 103 N LEU B 11 SHEET 3 H 6 ALA B 84 GLN B 90 -1 N TYR B 86 O THR B 102 SHEET 4 H 6 VAL B 33 GLN B 38 -1 N GLN B 38 O THR B 85 SHEET 5 H 6 LYS B 45 TYR B 49 -1 O LEU B 47 N TRP B 35 SHEET 6 H 6 TYR B 53 ARG B 54 -1 O TYR B 53 N TYR B 49 SHEET 1 I 4 SER B 115 PHE B 119 0 SHEET 2 I 4 ALA B 131 PHE B 140 -1 O LEU B 136 N THR B 117 SHEET 3 I 4 TYR B 173 LEU B 181 -1 O ALA B 175 N ILE B 137 SHEET 4 I 4 VAL B 160 THR B 162 -1 N GLU B 161 O TYR B 178 SHEET 1 J 4 SER B 115 PHE B 119 0 SHEET 2 J 4 ALA B 131 PHE B 140 -1 O LEU B 136 N THR B 117 SHEET 3 J 4 TYR B 173 LEU B 181 -1 O ALA B 175 N ILE B 137 SHEET 4 J 4 SER B 166 LYS B 167 -1 N SER B 166 O ALA B 174 SHEET 1 K 4 SER B 154 VAL B 156 0 SHEET 2 K 4 THR B 146 ALA B 151 -1 N ALA B 151 O SER B 154 SHEET 3 K 4 TYR B 192 HIS B 198 -1 O GLN B 195 N ALA B 148 SHEET 4 K 4 SER B 201 VAL B 207 -1 O VAL B 203 N VAL B 196 SHEET 1 L 4 GLN C 3 SER C 7 0 SHEET 2 L 4 LEU C 18 SER C 25 -1 O ALA C 23 N VAL C 5 SHEET 3 L 4 THR C 77 MET C 82 -1 O MET C 82 N LEU C 18 SHEET 4 L 4 THR C 68 ASP C 72 -1 N THR C 68 O GLN C 81 SHEET 1 M 6 GLY C 10 VAL C 12 0 SHEET 2 M 6 THR C 107 VAL C 111 1 O THR C 110 N GLY C 10 SHEET 3 M 6 ALA C 88 LEU C 96 -1 N ALA C 88 O VAL C 109 SHEET 4 M 6 THR C 33 GLN C 39 -1 N VAL C 37 O TYR C 91 SHEET 5 M 6 LEU C 45 VAL C 51 -1 O VAL C 48 N TRP C 36 SHEET 6 M 6 SER C 57 TYR C 59 -1 O ILE C 58 N ASP C 50 SHEET 1 N 4 GLY C 10 VAL C 12 0 SHEET 2 N 4 THR C 107 VAL C 111 1 O THR C 110 N GLY C 10 SHEET 3 N 4 ALA C 88 LEU C 96 -1 N ALA C 88 O VAL C 109 SHEET 4 N 4 SER C 99 TRP C 103 -1 O TYR C 102 N ARG C 94 SHEET 1 O 4 SER C 120 LEU C 124 0 SHEET 2 O 4 THR C 135 TYR C 145 -1 O LYS C 143 N SER C 120 SHEET 3 O 4 TYR C 176 PRO C 185 -1 O LEU C 178 N VAL C 142 SHEET 4 O 4 VAL C 163 THR C 165 -1 N HIS C 164 O VAL C 181 SHEET 1 P 4 THR C 131 SER C 132 0 SHEET 2 P 4 THR C 135 TYR C 145 -1 O THR C 135 N SER C 132 SHEET 3 P 4 TYR C 176 PRO C 185 -1 O LEU C 178 N VAL C 142 SHEET 4 P 4 VAL C 169 LEU C 170 -1 N VAL C 169 O SER C 177 SHEET 1 Q 3 THR C 151 TRP C 154 0 SHEET 2 Q 3 TYR C 194 HIS C 200 -1 O ASN C 197 N SER C 153 SHEET 3 Q 3 THR C 205 VAL C 211 -1 O VAL C 207 N VAL C 198 SHEET 1 R 4 MET D 4 SER D 7 0 SHEET 2 R 4 VAL D 19 ALA D 25 -1 O THR D 22 N SER D 7 SHEET 3 R 4 ASP D 70 ILE D 75 -1 O PHE D 71 N CYS D 23 SHEET 4 R 4 PHE D 62 SER D 67 -1 N SER D 63 O THR D 74 SHEET 1 S 6 SER D 10 LEU D 11 0 SHEET 2 S 6 THR D 102 VAL D 104 1 O LYS D 103 N LEU D 11 SHEET 3 S 6 THR D 85 GLN D 90 -1 N TYR D 86 O THR D 102 SHEET 4 S 6 VAL D 33 GLN D 38 -1 N ALA D 34 O GLN D 89 SHEET 5 S 6 LYS D 45 TYR D 49 -1 O LEU D 47 N TRP D 35 SHEET 6 S 6 TYR D 53 ARG D 54 -1 O TYR D 53 N TYR D 49 SHEET 1 T 4 SER D 115 PHE D 119 0 SHEET 2 T 4 ALA D 131 PHE D 140 -1 O LEU D 136 N THR D 117 SHEET 3 T 4 TYR D 173 LEU D 181 -1 O ALA D 175 N ILE D 137 SHEET 4 T 4 VAL D 160 THR D 162 -1 N GLU D 161 O TYR D 178 SHEET 1 U 4 SER D 115 PHE D 119 0 SHEET 2 U 4 ALA D 131 PHE D 140 -1 O LEU D 136 N THR D 117 SHEET 3 U 4 TYR D 173 LEU D 181 -1 O ALA D 175 N ILE D 137 SHEET 4 U 4 SER D 166 LYS D 167 -1 N SER D 166 O ALA D 174 SHEET 1 V 4 SER D 154 PRO D 155 0 SHEET 2 V 4 THR D 146 ALA D 151 -1 N ALA D 151 O SER D 154 SHEET 3 V 4 TYR D 192 HIS D 198 -1 O GLN D 195 N ALA D 148 SHEET 4 V 4 SER D 201 VAL D 207 -1 O SER D 201 N HIS D 198 SSBOND 1 CYS A 22 CYS A 92 1555 1555 2.07 SSBOND 2 CYS A 140 CYS A 196 1555 1555 2.05 SSBOND 3 CYS B 23 CYS B 88 1555 1555 2.07 SSBOND 4 CYS B 135 CYS B 194 1555 1555 2.04 SSBOND 5 CYS C 22 CYS C 92 1555 1555 2.07 SSBOND 6 CYS C 140 CYS C 196 1555 1555 2.04 SSBOND 7 CYS D 23 CYS D 88 1555 1555 2.06 SSBOND 8 CYS D 135 CYS D 194 1555 1555 2.08 CISPEP 1 PHE A 146 PRO A 147 0 -7.48 CISPEP 2 GLU A 148 PRO A 149 0 1.73 CISPEP 3 SER B 7 PRO B 8 0 -5.05 CISPEP 4 TYR B 94 PRO B 95 0 -2.99 CISPEP 5 TYR B 141 PRO B 142 0 1.92 CISPEP 6 PHE C 146 PRO C 147 0 -4.56 CISPEP 7 GLU C 148 PRO C 149 0 2.60 CISPEP 8 SER D 7 PRO D 8 0 -1.85 CISPEP 9 TYR D 94 PRO D 95 0 8.81 CISPEP 10 TYR D 141 PRO D 142 0 -0.34 SITE 1 AC1 3 SER A 7 GLY A 8 LYS A 201 SITE 1 AC2 6 LYS A 209 ALA B 112 ALA B 113 HIS B 198 SITE 2 AC2 6 HOH B 411 HOH B 442 SITE 1 AC3 4 GLU A 1 ARG C 94 TYR C 102 HOH D 444 SITE 1 AC4 4 SER A 25 GLY A 26 ASN A 76 GLY D 57 CRYST1 210.024 69.739 70.828 90.00 98.75 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.004761 0.000000 0.000733 0.00000 SCALE2 0.000000 0.014339 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014285 0.00000