HEADER TRANSFERASE/TRANSFERASE INHIBITOR 10-JUL-13 4LM5 TITLE CRYSTAL STRUCTURE OF PIM1 IN COMPLEX WITH 2-{4-[(3-AMINOPROPYL) TITLE 2 AMINO]QUINAZOLIN-2-YL}PHENOL (RESULTING FROM DISPLACEMENT OF TITLE 3 SKF86002) COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE PIM-1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 120-404; COMPND 5 SYNONYM: PROTO-ONCOGENE SERINE/THREONINE-PROTEIN KINASE PIM-1; COMPND 6 EC: 2.7.11.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PIM1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PCR2.1-TOPO KEYWDS CO-CRYSTALLIZATION, SKF86002, FLUORESCENCE, INHIBITOR SCREENING, KEYWDS 2 KINASE, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR L.J.PARKER,A.TANAKA,N.HANDA,K.HONDA,Y.TOMABECHI,M.SHIROUZU,S.YOKOYAMA REVDAT 4 06-DEC-23 4LM5 1 REMARK REVDAT 3 08-NOV-23 4LM5 1 REMARK REVDAT 2 18-DEC-19 4LM5 1 JRNL SEQADV LINK REVDAT 1 12-FEB-14 4LM5 0 JRNL AUTH L.J.PARKER,S.TARUYA,K.TSUGANEZAWA,N.OGAWA,J.MIKUNI,K.HONDA, JRNL AUTH 2 Y.TOMABECHI,N.HANDA,M.SHIROUZU,S.YOKOYAMA,A.TANAKA JRNL TITL KINASE CRYSTAL IDENTIFICATION AND ATP-COMPETITIVE INHIBITOR JRNL TITL 2 SCREENING USING THE FLUORESCENT LIGAND SKF86002. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 70 392 2014 JRNL REFN ESSN 1399-0047 JRNL PMID 24531473 JRNL DOI 10.1107/S1399004713028654 REMARK 2 REMARK 2 RESOLUTION. 2.25 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.2_1309 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.25 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.73 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 20872 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.158 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.050 REMARK 3 FREE R VALUE TEST SET COUNT : 1053 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.7310 - 4.4953 1.00 2530 128 0.1496 0.1601 REMARK 3 2 4.4953 - 3.5700 1.00 2502 130 0.1312 0.1854 REMARK 3 3 3.5700 - 3.1193 1.00 2465 132 0.1642 0.2263 REMARK 3 4 3.1193 - 2.8343 1.00 2476 143 0.1760 0.2190 REMARK 3 5 2.8343 - 2.6313 1.00 2461 120 0.1796 0.2222 REMARK 3 6 2.6313 - 2.4762 1.00 2480 126 0.1668 0.2087 REMARK 3 7 2.4762 - 2.3523 1.00 2460 131 0.1634 0.2160 REMARK 3 8 2.3523 - 2.2499 1.00 2445 143 0.1667 0.2212 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.710 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.94 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 2251 REMARK 3 ANGLE : 1.266 3047 REMARK 3 CHIRALITY : 0.098 321 REMARK 3 PLANARITY : 0.006 392 REMARK 3 DIHEDRAL : 17.147 825 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 35:49 ) REMARK 3 ORIGIN FOR THE GROUP (A): 41.0366 -7.8329 -3.1164 REMARK 3 T TENSOR REMARK 3 T11: 0.5517 T22: 0.1814 REMARK 3 T33: 0.3888 T12: 0.0266 REMARK 3 T13: -0.0996 T23: -0.0226 REMARK 3 L TENSOR REMARK 3 L11: 7.5798 L22: 3.8093 REMARK 3 L33: 3.8163 L12: -2.3934 REMARK 3 L13: -5.1875 L23: 1.9049 REMARK 3 S TENSOR REMARK 3 S11: 0.1711 S12: 0.3380 S13: -0.6028 REMARK 3 S21: -0.4212 S22: -0.1495 S23: -0.2587 REMARK 3 S31: 0.4537 S32: -0.3910 S33: 0.0369 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 50:96 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.1101 -1.5506 -8.5726 REMARK 3 T TENSOR REMARK 3 T11: 0.4589 T22: 0.1908 REMARK 3 T33: 0.2768 T12: -0.0183 REMARK 3 T13: -0.0738 T23: -0.0555 REMARK 3 L TENSOR REMARK 3 L11: 3.4765 L22: 5.5721 REMARK 3 L33: 5.9480 L12: 1.0238 REMARK 3 L13: 0.1343 L23: -2.8444 REMARK 3 S TENSOR REMARK 3 S11: -0.1531 S12: 0.1480 S13: -0.2421 REMARK 3 S21: -0.4508 S22: 0.3304 S23: 0.3701 REMARK 3 S31: 0.0333 S32: -0.4576 S33: -0.2230 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 97:140 ) REMARK 3 ORIGIN FOR THE GROUP (A): 43.1814 3.4301 -3.5811 REMARK 3 T TENSOR REMARK 3 T11: 0.3953 T22: 0.2326 REMARK 3 T33: 0.2811 T12: 0.0645 REMARK 3 T13: -0.0147 T23: 0.0598 REMARK 3 L TENSOR REMARK 3 L11: 2.8999 L22: 5.6438 REMARK 3 L33: 3.7558 L12: 3.1415 REMARK 3 L13: 1.9855 L23: 3.3733 REMARK 3 S TENSOR REMARK 3 S11: -0.0755 S12: -0.0400 S13: -0.4274 REMARK 3 S21: -0.2055 S22: 0.2046 S23: -0.2820 REMARK 3 S31: 0.1521 S32: 0.0552 S33: -0.1312 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 141:204 ) REMARK 3 ORIGIN FOR THE GROUP (A): 39.9079 15.2534 -4.3195 REMARK 3 T TENSOR REMARK 3 T11: 0.3101 T22: 0.1524 REMARK 3 T33: 0.1864 T12: 0.0108 REMARK 3 T13: -0.0063 T23: 0.0293 REMARK 3 L TENSOR REMARK 3 L11: 3.9546 L22: 1.3365 REMARK 3 L33: 2.8768 L12: -0.5437 REMARK 3 L13: 1.4467 L23: -0.1536 REMARK 3 S TENSOR REMARK 3 S11: 0.1663 S12: 0.0076 S13: -0.2517 REMARK 3 S21: -0.2098 S22: -0.0309 S23: 0.0806 REMARK 3 S31: 0.2865 S32: -0.0280 S33: -0.1255 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 205:250 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.6792 21.9333 5.4568 REMARK 3 T TENSOR REMARK 3 T11: 0.2446 T22: 0.2532 REMARK 3 T33: 0.1918 T12: -0.0252 REMARK 3 T13: 0.0235 T23: 0.0548 REMARK 3 L TENSOR REMARK 3 L11: 6.8745 L22: 2.0074 REMARK 3 L33: 3.5911 L12: -0.5404 REMARK 3 L13: 2.3432 L23: 1.6805 REMARK 3 S TENSOR REMARK 3 S11: 0.0636 S12: -0.6560 S13: -0.2306 REMARK 3 S21: 0.0881 S22: -0.0312 S23: 0.2314 REMARK 3 S31: 0.1632 S32: -0.5652 S33: -0.0041 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 251:290 ) REMARK 3 ORIGIN FOR THE GROUP (A): 40.4206 30.2141 3.9444 REMARK 3 T TENSOR REMARK 3 T11: 0.2728 T22: 0.1216 REMARK 3 T33: 0.2129 T12: 0.0345 REMARK 3 T13: -0.0047 T23: -0.0087 REMARK 3 L TENSOR REMARK 3 L11: 6.4699 L22: 2.6133 REMARK 3 L33: 7.1210 L12: -0.1295 REMARK 3 L13: 1.0087 L23: -0.0682 REMARK 3 S TENSOR REMARK 3 S11: -0.1403 S12: -0.1429 S13: 0.4461 REMARK 3 S21: -0.1547 S22: 0.0662 S23: -0.0245 REMARK 3 S31: -0.3563 S32: -0.1440 S33: 0.0483 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 291:305 ) REMARK 3 ORIGIN FOR THE GROUP (A): 58.4889 18.3249 0.2396 REMARK 3 T TENSOR REMARK 3 T11: 0.2916 T22: 0.5012 REMARK 3 T33: 0.3958 T12: 0.0289 REMARK 3 T13: -0.0185 T23: -0.0607 REMARK 3 L TENSOR REMARK 3 L11: 5.7810 L22: 7.5670 REMARK 3 L33: 9.8333 L12: -1.2711 REMARK 3 L13: -0.6021 L23: -3.3276 REMARK 3 S TENSOR REMARK 3 S11: -0.2830 S12: 0.0108 S13: -0.1534 REMARK 3 S21: -0.2726 S22: 0.1804 S23: -1.2471 REMARK 3 S31: 0.6358 S32: 0.9654 S33: 0.1003 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4LM5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 30-JUL-13. REMARK 100 THE DEPOSITION ID IS D_1000080802. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-OCT-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20902 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.250 REMARK 200 RESOLUTION RANGE LOW (A) : 84.590 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 22.50 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06600 REMARK 200 FOR THE DATA SET : 39.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.25 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.37 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 22.10 REMARK 200 R MERGE FOR SHELL (I) : 0.41200 REMARK 200 R SYM FOR SHELL (I) : 0.41200 REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.2 REMARK 200 STARTING MODEL: 3UMW REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.18 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100MM CITRATE BUFFER PH 5.5, 200MM REMARK 280 NACL, 1M NH4HPO4. CO-CRYSTALLISED IN THE PRESENCE OF 2MM REMARK 280 SKF86002. THEN THESE CRYSTALS WERE SOAKED WITH 2MM INHIBITOR REMARK 280 DISSOLVED IN DMSO., VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.85400 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 26.92700 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 40.39050 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 13.46350 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 67.31750 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 28 REMARK 465 LYS A 29 REMARK 465 GLU A 30 REMARK 465 LYS A 31 REMARK 465 GLU A 32 REMARK 465 PRO A 33 REMARK 465 LEU A 34 REMARK 465 LEU A 80 REMARK 465 PRO A 81 REMARK 465 ASN A 82 REMARK 465 GLY A 83 REMARK 465 THR A 84 REMARK 465 ARG A 85 REMARK 465 SER A 306 REMARK 465 LEU A 307 REMARK 465 SER A 308 REMARK 465 PRO A 309 REMARK 465 GLY A 310 REMARK 465 PRO A 311 REMARK 465 SER A 312 REMARK 465 LYS A 313 REMARK 465 SER A 314 REMARK 465 GLY A 315 REMARK 465 PRO A 316 REMARK 465 SER A 317 REMARK 465 SER A 318 REMARK 465 GLY A 319 REMARK 465 GLU A 320 REMARK 465 ASN A 321 REMARK 465 LEU A 322 REMARK 465 TYR A 323 REMARK 465 PHE A 324 REMARK 465 GLN A 325 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 79 CG CD OE1 OE2 REMARK 470 HIS A 305 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 167 43.14 -145.95 REMARK 500 ASP A 186 81.43 65.43 REMARK 500 ASP A 202 24.87 -145.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE Q17 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 404 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4LL5 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PIM1 IN COMPLEX WITH FLUORESCENT COMPOUND REMARK 900 SKF86002 REMARK 900 RELATED ID: 4LMU RELATED DB: PDB REMARK 900 RELATED ID: 4LUD RELATED DB: PDB REMARK 900 RELATED ID: 4LUE RELATED DB: PDB DBREF 4LM5 A 29 313 UNP P11309 PIM1_HUMAN 120 404 SEQADV 4LM5 MET A 28 UNP P11309 EXPRESSION TAG SEQADV 4LM5 SER A 314 UNP P11309 EXPRESSION TAG SEQADV 4LM5 GLY A 315 UNP P11309 EXPRESSION TAG SEQADV 4LM5 PRO A 316 UNP P11309 EXPRESSION TAG SEQADV 4LM5 SER A 317 UNP P11309 EXPRESSION TAG SEQADV 4LM5 SER A 318 UNP P11309 EXPRESSION TAG SEQADV 4LM5 GLY A 319 UNP P11309 EXPRESSION TAG SEQADV 4LM5 GLU A 320 UNP P11309 EXPRESSION TAG SEQADV 4LM5 ASN A 321 UNP P11309 EXPRESSION TAG SEQADV 4LM5 LEU A 322 UNP P11309 EXPRESSION TAG SEQADV 4LM5 TYR A 323 UNP P11309 EXPRESSION TAG SEQADV 4LM5 PHE A 324 UNP P11309 EXPRESSION TAG SEQADV 4LM5 GLN A 325 UNP P11309 EXPRESSION TAG SEQRES 1 A 298 MET LYS GLU LYS GLU PRO LEU GLU SER GLN TYR GLN VAL SEQRES 2 A 298 GLY PRO LEU LEU GLY SER GLY GLY PHE GLY SER VAL TYR SEQRES 3 A 298 SER GLY ILE ARG VAL SER ASP ASN LEU PRO VAL ALA ILE SEQRES 4 A 298 LYS HIS VAL GLU LYS ASP ARG ILE SER ASP TRP GLY GLU SEQRES 5 A 298 LEU PRO ASN GLY THR ARG VAL PRO MET GLU VAL VAL LEU SEQRES 6 A 298 LEU LYS LYS VAL SER SER GLY PHE SER GLY VAL ILE ARG SEQRES 7 A 298 LEU LEU ASP TRP PHE GLU ARG PRO ASP SER PHE VAL LEU SEQRES 8 A 298 ILE LEU GLU ARG PRO GLU PRO VAL GLN ASP LEU PHE ASP SEQRES 9 A 298 PHE ILE THR GLU ARG GLY ALA LEU GLN GLU GLU LEU ALA SEQRES 10 A 298 ARG SER PHE PHE TRP GLN VAL LEU GLU ALA VAL ARG HIS SEQRES 11 A 298 CYS HIS ASN CSO GLY VAL LEU HIS ARG ASP ILE LYS ASP SEQRES 12 A 298 GLU ASN ILE LEU ILE ASP LEU ASN ARG GLY GLU LEU LYS SEQRES 13 A 298 LEU ILE ASP PHE GLY SER GLY ALA LEU LEU LYS ASP THR SEQRES 14 A 298 VAL TYR THR ASP PHE ASP GLY THR ARG VAL TYR SER PRO SEQRES 15 A 298 PRO GLU TRP ILE ARG TYR HIS ARG TYR HIS GLY ARG SER SEQRES 16 A 298 ALA ALA VAL TRP SER LEU GLY ILE LEU LEU TYR ASP MET SEQRES 17 A 298 VAL CYS GLY ASP ILE PRO PHE GLU HIS ASP GLU GLU ILE SEQRES 18 A 298 ILE ARG GLY GLN VAL PHE PHE ARG GLN ARG VAL SER SER SEQRES 19 A 298 GLU CYS GLN HIS LEU ILE ARG TRP CYS LEU ALA LEU ARG SEQRES 20 A 298 PRO SER ASP ARG PRO THR PHE GLU GLU ILE GLN ASN HIS SEQRES 21 A 298 PRO TRP MET GLN ASP VAL LEU LEU PRO GLN GLU THR ALA SEQRES 22 A 298 GLU ILE HIS LEU HIS SER LEU SER PRO GLY PRO SER LYS SEQRES 23 A 298 SER GLY PRO SER SER GLY GLU ASN LEU TYR PHE GLN MODRES 4LM5 CSO A 161 CYS S-HYDROXYCYSTEINE HET CSO A 161 7 HET Q17 A 401 22 HET GOL A 402 6 HET GOL A 403 6 HET GOL A 404 6 HETNAM CSO S-HYDROXYCYSTEINE HETNAM Q17 2-{4-[(3-AMINOPROPYL)AMINO]QUINAZOLIN-2-YL}PHENOL HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 CSO C3 H7 N O3 S FORMUL 2 Q17 C17 H18 N4 O FORMUL 3 GOL 3(C3 H8 O3) FORMUL 6 HOH *111(H2 O) HELIX 1 1 ASP A 72 ILE A 74 5 3 HELIX 2 2 PRO A 87 SER A 97 1 11 HELIX 3 3 LEU A 129 GLY A 137 1 9 HELIX 4 4 GLN A 140 CSO A 161 1 22 HELIX 5 5 LYS A 169 GLU A 171 5 3 HELIX 6 6 THR A 204 SER A 208 5 5 HELIX 7 7 PRO A 209 HIS A 216 1 8 HELIX 8 8 HIS A 219 GLY A 238 1 20 HELIX 9 9 HIS A 244 GLY A 251 1 8 HELIX 10 10 SER A 260 LEU A 271 1 12 HELIX 11 11 ARG A 274 ARG A 278 5 5 HELIX 12 12 THR A 280 ASN A 286 1 7 HELIX 13 13 HIS A 287 GLN A 291 5 5 HELIX 14 14 LEU A 295 LEU A 304 1 10 SHEET 1 A 5 TYR A 38 GLY A 47 0 SHEET 2 A 5 GLY A 50 ARG A 57 -1 O VAL A 52 N LEU A 44 SHEET 3 A 5 PRO A 63 GLU A 70 -1 O ILE A 66 N TYR A 53 SHEET 4 A 5 SER A 115 GLU A 121 -1 O LEU A 120 N ALA A 65 SHEET 5 A 5 LEU A 106 GLU A 111 -1 N ASP A 108 O ILE A 119 SHEET 1 B 3 VAL A 126 ASP A 128 0 SHEET 2 B 3 ILE A 173 ASP A 176 -1 O ILE A 175 N GLN A 127 SHEET 3 B 3 GLU A 181 LEU A 184 -1 O LYS A 183 N LEU A 174 SHEET 1 C 2 VAL A 163 LEU A 164 0 SHEET 2 C 2 ALA A 191 LEU A 192 -1 O ALA A 191 N LEU A 164 LINK C ASN A 160 N CSO A 161 1555 1555 1.33 LINK C CSO A 161 N GLY A 162 1555 1555 1.33 CISPEP 1 GLU A 124 PRO A 125 0 -0.47 SITE 1 AC1 13 PHE A 49 VAL A 52 ALA A 65 LYS A 67 SITE 2 AC1 13 LEU A 120 GLU A 121 ASP A 128 GLU A 171 SITE 3 AC1 13 LEU A 174 ILE A 185 ASP A 186 GOL A 404 SITE 4 AC1 13 HOH A 592 SITE 1 AC2 7 PHE A 130 ILE A 133 ASP A 170 ASP A 234 SITE 2 AC2 7 GLY A 238 ASP A 239 HOH A 599 SITE 1 AC3 5 ARG A 156 ARG A 258 SER A 261 HOH A 512 SITE 2 AC3 5 HOH A 547 SITE 1 AC4 4 GLN A 127 ASP A 128 ASP A 131 Q17 A 401 CRYST1 97.677 97.677 80.781 90.00 90.00 120.00 P 65 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010238 0.005911 0.000000 0.00000 SCALE2 0.000000 0.011822 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012379 0.00000