HEADER RNA BINDING PROTEIN/INHIBITOR 11-JUL-13 4LN7 TITLE 5,6-BIS(4-FLUOROPHENYL)-3-HYDROXY-2,5-DIHYDROPYRIDIN-2-ONE BOUND TO TITLE 2 INFLUENZA 2009 PH1N1 ENDONUCLEASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLYMERASE PA; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1-204; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: INFLUENZA A VIRUS SOURCE 3 (A/LIMA/WRAIR1695P/2009(H1N1)); SOURCE 4 ORGANISM_TAXID: 985958; SOURCE 5 GENE: PA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3) RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PCDF-2 KEYWDS CAP-SNATCHING, RNA BINDING PROTEIN-INHIBITOR, RNA BINDING PROTEIN- KEYWDS 2 INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.D.BAUMAN,D.PATEL,K.DAS,E.ARNOLD REVDAT 4 28-FEB-24 4LN7 1 REMARK SEQADV LINK REVDAT 3 11-DEC-13 4LN7 1 JRNL REVDAT 2 04-DEC-13 4LN7 1 REMARK REVDAT 1 18-SEP-13 4LN7 0 JRNL AUTH J.D.BAUMAN,D.PATEL,S.F.BAKER,R.S.VIJAYAN,A.XIANG,A.K.PARHI, JRNL AUTH 2 L.MARTINEZ-SOBRIDO,E.J.LAVOIE,K.DAS,E.ARNOLD JRNL TITL CRYSTALLOGRAPHIC FRAGMENT SCREENING AND STRUCTURE-BASED JRNL TITL 2 OPTIMIZATION YIELDS A NEW CLASS OF INFLUENZA ENDONUCLEASE JRNL TITL 3 INHIBITORS. JRNL REF ACS CHEM.BIOL. V. 8 2501 2013 JRNL REFN ISSN 1554-8929 JRNL PMID 23978130 JRNL DOI 10.1021/CB400400J REMARK 2 REMARK 2 RESOLUTION. 1.73 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.73 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.53 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 31857 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.203 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.080 REMARK 3 FREE R VALUE TEST SET COUNT : 1618 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.5388 - 3.9590 0.99 2625 151 0.1843 0.1822 REMARK 3 2 3.9590 - 3.1431 0.99 2548 145 0.1745 0.2038 REMARK 3 3 3.1431 - 2.7460 1.00 2554 120 0.1809 0.2309 REMARK 3 4 2.7460 - 2.4950 1.00 2505 141 0.1754 0.2099 REMARK 3 5 2.4950 - 2.3163 1.00 2532 126 0.1705 0.2011 REMARK 3 6 2.3163 - 2.1797 1.00 2517 130 0.1633 0.1877 REMARK 3 7 2.1797 - 2.0706 1.00 2493 148 0.1713 0.2122 REMARK 3 8 2.0706 - 1.9805 1.00 2488 135 0.1784 0.2231 REMARK 3 9 1.9805 - 1.9042 1.00 2502 125 0.1893 0.2522 REMARK 3 10 1.9042 - 1.8385 1.00 2507 127 0.2107 0.2372 REMARK 3 11 1.8385 - 1.7810 1.00 2475 139 0.2143 0.2239 REMARK 3 12 1.7810 - 1.7301 1.00 2493 131 0.2269 0.2340 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.950 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 1748 REMARK 3 ANGLE : 1.293 2360 REMARK 3 CHIRALITY : 0.075 242 REMARK 3 PLANARITY : 0.007 298 REMARK 3 DIHEDRAL : 15.407 656 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID -4 THROUGH 31 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.6545 18.7095 -18.4479 REMARK 3 T TENSOR REMARK 3 T11: 0.2674 T22: 0.2040 REMARK 3 T33: 0.1427 T12: -0.0422 REMARK 3 T13: 0.0310 T23: -0.0375 REMARK 3 L TENSOR REMARK 3 L11: 7.3115 L22: 5.3340 REMARK 3 L33: 5.3393 L12: 3.2135 REMARK 3 L13: 0.9462 L23: -1.3645 REMARK 3 S TENSOR REMARK 3 S11: -0.3003 S12: 0.5482 S13: -0.2612 REMARK 3 S21: -0.3474 S22: 0.2418 S23: -0.0124 REMARK 3 S31: 0.1952 S32: -0.0325 S33: 0.0068 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 32 THROUGH 62 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.5534 12.6554 -0.7005 REMARK 3 T TENSOR REMARK 3 T11: 0.2717 T22: 0.1688 REMARK 3 T33: 0.2642 T12: -0.0877 REMARK 3 T13: -0.0101 T23: 0.0330 REMARK 3 L TENSOR REMARK 3 L11: 4.0411 L22: 6.2571 REMARK 3 L33: 6.3595 L12: 0.6339 REMARK 3 L13: -0.6325 L23: -2.7189 REMARK 3 S TENSOR REMARK 3 S11: -0.1430 S12: -0.4394 S13: -0.6502 REMARK 3 S21: 0.3172 S22: -0.1209 S23: -0.1575 REMARK 3 S31: 0.5600 S32: -0.0925 S33: 0.3442 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 63 THROUGH 83 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.5741 4.8322 0.6943 REMARK 3 T TENSOR REMARK 3 T11: 0.3636 T22: 0.2757 REMARK 3 T33: 0.5081 T12: -0.0647 REMARK 3 T13: -0.0576 T23: 0.0590 REMARK 3 L TENSOR REMARK 3 L11: 2.2696 L22: 4.4254 REMARK 3 L33: 5.5471 L12: 1.6110 REMARK 3 L13: -0.4359 L23: -3.1177 REMARK 3 S TENSOR REMARK 3 S11: 0.2614 S12: -0.0622 S13: -0.9422 REMARK 3 S21: -0.0251 S22: -0.4809 S23: -0.8019 REMARK 3 S31: 0.6836 S32: 0.6987 S33: 0.1366 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 84 THROUGH 126 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.5650 14.2716 -3.5740 REMARK 3 T TENSOR REMARK 3 T11: 0.2390 T22: 0.2527 REMARK 3 T33: 0.2521 T12: -0.0507 REMARK 3 T13: -0.0104 T23: -0.0165 REMARK 3 L TENSOR REMARK 3 L11: 3.4165 L22: 3.0307 REMARK 3 L33: 5.0897 L12: 0.7589 REMARK 3 L13: 0.6236 L23: 0.6682 REMARK 3 S TENSOR REMARK 3 S11: 0.2243 S12: -0.1524 S13: 0.0831 REMARK 3 S21: 0.3180 S22: -0.2067 S23: 0.5085 REMARK 3 S31: 0.3784 S32: -0.7526 S33: -0.0649 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 127 THROUGH 164 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.2673 25.9244 1.8351 REMARK 3 T TENSOR REMARK 3 T11: 0.2898 T22: 0.1925 REMARK 3 T33: 0.2733 T12: 0.0297 REMARK 3 T13: -0.0302 T23: -0.0781 REMARK 3 L TENSOR REMARK 3 L11: 4.9248 L22: 6.4884 REMARK 3 L33: 7.0877 L12: 0.4892 REMARK 3 L13: -1.5317 L23: -1.3256 REMARK 3 S TENSOR REMARK 3 S11: 0.1724 S12: -0.0538 S13: 0.6703 REMARK 3 S21: -0.1043 S22: -0.0446 S23: 0.6684 REMARK 3 S31: -0.7122 S32: -0.5581 S33: -0.0890 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 165 THROUGH 195 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.9578 26.5851 -4.9463 REMARK 3 T TENSOR REMARK 3 T11: 0.3409 T22: 0.2216 REMARK 3 T33: 0.2426 T12: -0.1105 REMARK 3 T13: -0.0358 T23: -0.0243 REMARK 3 L TENSOR REMARK 3 L11: 3.5255 L22: 1.8398 REMARK 3 L33: 4.6957 L12: 1.6776 REMARK 3 L13: -1.8724 L23: -0.8234 REMARK 3 S TENSOR REMARK 3 S11: 0.0187 S12: 0.0608 S13: 0.2398 REMARK 3 S21: 0.0066 S22: -0.1105 S23: -0.0038 REMARK 3 S31: -0.7666 S32: 0.4623 S33: 0.1131 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4LN7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-AUG-13. REMARK 100 THE DEPOSITION ID IS D_1000080840. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : HORIZONTAL BENT SI(111), REMARK 200 ASYMMETRICALLY CUT WITH WATER REMARK 200 COOLED CU BLOCK REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33347 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.730 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : 0.06300 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 22.7600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.73 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.78 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : 0.82000 REMARK 200 R SYM FOR SHELL (I) : 0.68100 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.430 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX 1.8.2_1309 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.76 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 200 MM MES, 27% PEG8K, 200 MM AMMONIUM REMARK 280 SULFATE, 1 MM MANGANESE CHLORIDE, 10 MM MAGNESIUM ACETATE, 10 MM REMARK 280 TAURINE, AND 50 MM SODIUM FLUORIDE, PH 6.7, VAPOR DIFFUSION, REMARK 280 SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.30800 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 33.30800 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 44.82900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.52450 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 44.82900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.52450 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 33.30800 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 44.82900 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 50.52450 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 33.30800 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 44.82900 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 50.52450 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3480 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -102.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLU A 198 REMARK 465 GLU A 199 REMARK 465 THR A 200 REMARK 465 VAL A 201 REMARK 465 GLU A 202 REMARK 465 GLU A 203 REMARK 465 ARG A 204 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 C ILE A 138 H LYS A 139 1.38 REMARK 500 HH22 ARG A 84 O HOH A 538 1.53 REMARK 500 O HOH A 513 O HOH A 539 1.98 REMARK 500 O2 SO4 A 305 O HOH A 542 2.04 REMARK 500 O ASN A 115 O HOH A 554 2.12 REMARK 500 OG1 THR A 151 OE1 GLU A 153 2.13 REMARK 500 OE1 GLU A 26 NZ LYS A 34 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LYS A 139 C - N - CA ANGL. DEV. = 18.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 51 -2.75 77.54 REMARK 500 ASP A 67 62.28 -117.13 REMARK 500 ARG A 125 -162.90 -110.99 REMARK 500 GLU A 141 -16.03 84.76 REMARK 500 THR A 162 -42.52 69.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 301 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 41 NE2 REMARK 620 2 ASP A 108 OD2 96.1 REMARK 620 3 GLU A 119 OE2 176.4 87.5 REMARK 620 4 ILE A 120 O 89.0 91.2 91.5 REMARK 620 5 1ZQ A 306 O04 87.1 173.2 89.3 94.8 REMARK 620 6 1ZQ A 306 O01 82.8 99.1 96.2 167.4 75.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 302 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 80 OE1 REMARK 620 2 ASP A 108 OD1 91.0 REMARK 620 3 1ZQ A 306 O01 92.2 87.6 REMARK 620 4 HOH A 443 O 88.2 90.7 178.2 REMARK 620 5 HOH A 446 O 88.1 178.9 93.1 88.6 REMARK 620 6 HOH A 502 O 177.3 89.4 90.5 89.2 91.4 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 307 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 80 OE2 REMARK 620 2 HOH A 420 O 94.8 REMARK 620 3 HOH A 446 O 101.7 79.7 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1ZQ A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 308 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4KIL RELATED DB: PDB REMARK 900 RELATED ID: 4M5O RELATED DB: PDB REMARK 900 RELATED ID: 4M5Q RELATED DB: PDB REMARK 900 RELATED ID: 4M5R RELATED DB: PDB REMARK 900 RELATED ID: 4M5U RELATED DB: PDB REMARK 900 RELATED ID: 4M5V RELATED DB: PDB REMARK 900 RELATED ID: 4MK1 RELATED DB: PDB REMARK 900 RELATED ID: 4MK2 RELATED DB: PDB REMARK 900 RELATED ID: 4MK5 RELATED DB: PDB DBREF 4LN7 A 1 204 UNP F0TRT1 F0TRT1_9INFA 1 204 SEQADV 4LN7 GLY A -4 UNP F0TRT1 EXPRESSION TAG SEQADV 4LN7 PRO A -3 UNP F0TRT1 EXPRESSION TAG SEQADV 4LN7 LEU A -2 UNP F0TRT1 EXPRESSION TAG SEQADV 4LN7 GLY A -1 UNP F0TRT1 EXPRESSION TAG SEQADV 4LN7 SER A 0 UNP F0TRT1 EXPRESSION TAG SEQADV 4LN7 VAL A 201 UNP F0TRT1 ILE 201 CONFLICT SEQRES 1 A 209 GLY PRO LEU GLY SER MET GLU ASP PHE VAL ARG GLN CYS SEQRES 2 A 209 PHE ASN PRO MET ILE VAL GLU LEU ALA GLU LYS ALA MET SEQRES 3 A 209 LYS GLU TYR GLY GLU ASP PRO LYS ILE GLU THR ASN LYS SEQRES 4 A 209 PHE ALA ALA ILE CYS THR HIS LEU GLU VAL CYS PHE MET SEQRES 5 A 209 TYR SER ASP PHE HIS PHE ILE ASP GLU ARG GLY GLU SER SEQRES 6 A 209 ILE ILE VAL GLU SER GLY ASP PRO ASN ALA LEU LEU LYS SEQRES 7 A 209 HIS ARG PHE GLU ILE ILE GLU GLY ARG ASP ARG ILE MET SEQRES 8 A 209 ALA TRP THR VAL VAL ASN SER ILE CYS ASN THR THR GLY SEQRES 9 A 209 VAL GLU LYS PRO LYS PHE LEU PRO ASP LEU TYR ASP TYR SEQRES 10 A 209 LYS GLU ASN ARG PHE ILE GLU ILE GLY VAL THR ARG ARG SEQRES 11 A 209 GLU VAL HIS ILE TYR TYR LEU GLU LYS ALA ASN LYS ILE SEQRES 12 A 209 LYS SER GLU LYS THR HIS ILE HIS ILE PHE SER PHE THR SEQRES 13 A 209 GLY GLU GLU MET ALA THR LYS ALA ASP TYR THR LEU ASP SEQRES 14 A 209 GLU GLU SER ARG ALA ARG ILE LYS THR ARG LEU PHE THR SEQRES 15 A 209 ILE ARG GLN GLU MET ALA SER ARG SER LEU TRP ASP SER SEQRES 16 A 209 PHE ARG GLN SER GLU ARG GLY GLU GLU THR VAL GLU GLU SEQRES 17 A 209 ARG HET MN A 301 1 HET MN A 302 1 HET EDO A 303 10 HET SO4 A 304 5 HET SO4 A 305 5 HET 1ZQ A 306 22 HET MG A 307 1 HET EDO A 308 10 HETNAM MN MANGANESE (II) ION HETNAM EDO 1,2-ETHANEDIOL HETNAM SO4 SULFATE ION HETNAM 1ZQ 5,6-BIS(4-FLUOROPHENYL)PYRIDINE-2,3-DIOL HETNAM MG MAGNESIUM ION HETSYN EDO ETHYLENE GLYCOL FORMUL 2 MN 2(MN 2+) FORMUL 4 EDO 2(C2 H6 O2) FORMUL 5 SO4 2(O4 S 2-) FORMUL 7 1ZQ C17 H11 F2 N O2 FORMUL 8 MG MG 2+ FORMUL 10 HOH *157(H2 O) HELIX 1 1 SER A 0 PHE A 9 1 10 HELIX 2 2 ASN A 10 GLY A 25 1 16 HELIX 3 3 GLU A 31 ASP A 50 1 20 HELIX 4 4 ASP A 83 GLY A 99 1 17 HELIX 5 5 GLU A 126 ASN A 136 1 11 HELIX 6 6 LYS A 158 ASP A 160 5 3 HELIX 7 7 ASP A 164 ARG A 185 1 22 HELIX 8 8 LEU A 187 SER A 194 1 8 SHEET 1 A 3 SER A 60 ILE A 62 0 SHEET 2 A 3 HIS A 52 ILE A 54 -1 N PHE A 53 O ILE A 61 SHEET 3 A 3 LYS A 73 HIS A 74 -1 O LYS A 73 N ILE A 54 SHEET 1 B 5 PHE A 76 ILE A 78 0 SHEET 2 B 5 LEU A 109 ASP A 111 -1 O TYR A 110 N GLU A 77 SHEET 3 B 5 ARG A 116 THR A 123 -1 O ARG A 116 N ASP A 111 SHEET 4 B 5 HIS A 144 SER A 149 1 O HIS A 144 N GLU A 119 SHEET 5 B 5 GLU A 154 ALA A 156 -1 O MET A 155 N ILE A 147 LINK NE2 HIS A 41 MN MN A 301 1555 1555 2.25 LINK OE1 GLU A 80 MN MN A 302 1555 1555 2.11 LINK OE2 GLU A 80 MG MG A 307 1555 1555 2.45 LINK OD2 ASP A 108 MN MN A 301 1555 1555 2.14 LINK OD1 ASP A 108 MN MN A 302 1555 1555 2.07 LINK OE2 GLU A 119 MN MN A 301 1555 1555 2.12 LINK O ILE A 120 MN MN A 301 1555 1555 2.13 LINK MN MN A 301 O04 1ZQ A 306 1555 1555 2.07 LINK MN MN A 301 O01 1ZQ A 306 1555 1555 2.21 LINK MN MN A 302 O01 1ZQ A 306 1555 1555 2.15 LINK MN MN A 302 O HOH A 443 1555 1555 2.21 LINK MN MN A 302 O HOH A 446 1555 1555 2.26 LINK MN MN A 302 O HOH A 502 1555 1555 2.05 LINK MG MG A 307 O HOH A 420 1555 1555 2.19 LINK MG MG A 307 O HOH A 446 1555 1555 2.94 SITE 1 AC1 5 HIS A 41 ASP A 108 GLU A 119 ILE A 120 SITE 2 AC1 5 1ZQ A 306 SITE 1 AC2 6 GLU A 80 ASP A 108 1ZQ A 306 HOH A 443 SITE 2 AC2 6 HOH A 446 HOH A 502 SITE 1 AC3 4 ARG A 84 TRP A 88 PHE A 105 LEU A 106 SITE 1 AC4 3 LEU A 72 LYS A 73 HIS A 74 SITE 1 AC5 9 ILE A 30 THR A 32 ASN A 33 GLU A 165 SITE 2 AC5 9 GLU A 166 ALA A 169 HOH A 423 HOH A 542 SITE 3 AC5 9 HOH A 550 SITE 1 AC6 17 ALA A 20 TYR A 24 LYS A 34 ILE A 38 SITE 2 AC6 17 HIS A 41 GLU A 80 ASP A 108 GLU A 119 SITE 3 AC6 17 ILE A 120 LYS A 134 MN A 301 MN A 302 SITE 4 AC6 17 MG A 307 EDO A 308 HOH A 404 HOH A 446 SITE 5 AC6 17 HOH A 502 SITE 1 AC7 4 GLU A 80 1ZQ A 306 HOH A 420 HOH A 446 SITE 1 AC8 5 ASN A 33 LYS A 34 ARG A 124 1ZQ A 306 SITE 2 AC8 5 HOH A 423 CRYST1 89.658 101.049 66.616 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011153 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009896 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015011 0.00000