HEADER LYASE 11-JUL-13 4LN9 TITLE CRYSTAL STRUCTURE OF THE DEHYDRATASE DOMAIN FROM THE TERMINAL MODULE TITLE 2 OF THE RIFAMYCIN POLYKETIDE SYNTHASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIFAMYCIN POLYKETIDE SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: DEHYDRATASE; COMPND 5 SYNONYM: RIFE, RIFAMYCIN POLYKETIDE SYNTHASE, TYPE 1; COMPND 6 EC: 2.3.1.94; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AMYCOLATOPSIS MEDITERRANEI; SOURCE 3 ORGANISM_TAXID: 33910; SOURCE 4 GENE: RIFE; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PET; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28-A KEYWDS DOUBLE HOTDOG FOLD, DEHYDRATION OF POLYKETIDE INTERMEDIATE, MODULE 10 KEYWDS 2 OF RIFAMYCIN POLYKETIDE SYNTHASE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR D.C.GAY,Y.-O.YOU,D.CANE,A.T.KEATINGE-CLAY REVDAT 3 20-SEP-23 4LN9 1 SEQADV REVDAT 2 19-FEB-14 4LN9 1 JRNL REVDAT 1 18-DEC-13 4LN9 0 JRNL AUTH D.GAY,Y.O.YOU,A.KEATINGE-CLAY,D.E.CANE JRNL TITL STRUCTURE AND STEREOSPECIFICITY OF THE DEHYDRATASE DOMAIN JRNL TITL 2 FROM THE TERMINAL MODULE OF THE RIFAMYCIN POLYKETIDE JRNL TITL 3 SYNTHASE. JRNL REF BIOCHEMISTRY V. 52 8916 2013 JRNL REFN ISSN 0006-2960 JRNL PMID 24274103 JRNL DOI 10.1021/BI400988T REMARK 2 REMARK 2 RESOLUTION. 1.82 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.82 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 39.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 55103 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.214 REMARK 3 R VALUE (WORKING SET) : 0.211 REMARK 3 FREE R VALUE : 0.254 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2931 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.82 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4134 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.70 REMARK 3 BIN R VALUE (WORKING SET) : 0.3820 REMARK 3 BIN FREE R VALUE SET COUNT : 205 REMARK 3 BIN FREE R VALUE : 0.4010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4134 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 310 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.12 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.135 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.134 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.107 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.566 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.960 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4225 ; 0.004 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5778 ; 0.759 ; 1.969 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 553 ; 7.895 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 176 ;34.589 ;22.045 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 601 ;15.297 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 47 ;18.900 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 668 ; 0.066 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3279 ; 0.016 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4LN9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-JUL-13. REMARK 100 THE DEPOSITION ID IS D_1000080842. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JAN-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 5.0.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.2131 REMARK 200 MONOCHROMATOR : DOUBLE-CRYSTAL, SI(111) LIQUID REMARK 200 N2 COOLED REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 58168 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.820 REMARK 200 RESOLUTION RANGE LOW (A) : 39.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07500 REMARK 200 FOR THE DATA SET : 10.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.82 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.80700 REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: PDB ENTRY 3EL6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.47 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.1 M SODIUM CITRATE, 0.1 M HEPES PH REMARK 280 6.8, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.28000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 32.64000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2320 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 ASP A 3 REMARK 465 THR A 4 REMARK 465 ALA A 5 REMARK 465 SER A 6 REMARK 465 THR A 234 REMARK 465 GLU A 235 REMARK 465 SER A 236 REMARK 465 TYR A 237 REMARK 465 GLY A 238 REMARK 465 ASP A 239 REMARK 465 GLU A 240 REMARK 465 VAL A 295 REMARK 465 SER A 296 REMARK 465 ASN A 297 REMARK 465 ASP A 298 REMARK 465 GLN A 299 REMARK 465 LEU A 300 REMARK 465 THR A 301 REMARK 465 THR A 302 REMARK 465 ALA A 303 REMARK 465 ALA A 304 REMARK 465 GLY A 305 REMARK 465 MET B -19 REMARK 465 GLY B -18 REMARK 465 SER B -17 REMARK 465 SER B -16 REMARK 465 HIS B -15 REMARK 465 HIS B -14 REMARK 465 HIS B -13 REMARK 465 HIS B -12 REMARK 465 HIS B -11 REMARK 465 HIS B -10 REMARK 465 SER B -9 REMARK 465 SER B -8 REMARK 465 GLY B -7 REMARK 465 LEU B -6 REMARK 465 VAL B -5 REMARK 465 PRO B -4 REMARK 465 ARG B -3 REMARK 465 GLY B -2 REMARK 465 SER B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 ASP B 3 REMARK 465 THR B 4 REMARK 465 ALA B 5 REMARK 465 SER B 6 REMARK 465 ALA B 232 REMARK 465 ASP B 233 REMARK 465 THR B 234 REMARK 465 GLU B 235 REMARK 465 SER B 236 REMARK 465 TYR B 237 REMARK 465 GLY B 238 REMARK 465 ASP B 239 REMARK 465 GLU B 240 REMARK 465 VAL B 241 REMARK 465 ARG B 242 REMARK 465 PRO B 294 REMARK 465 VAL B 295 REMARK 465 SER B 296 REMARK 465 ASN B 297 REMARK 465 ASP B 298 REMARK 465 GLN B 299 REMARK 465 LEU B 300 REMARK 465 THR B 301 REMARK 465 THR B 302 REMARK 465 ALA B 303 REMARK 465 ALA B 304 REMARK 465 GLY B 305 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 404 O HOH B 500 2.10 REMARK 500 O HOH B 532 O HOH B 533 2.12 REMARK 500 N ASP A 123 O HOH A 485 2.19 REMARK 500 O HOH B 456 O HOH B 500 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 54 15.70 59.33 REMARK 500 SER A 189 -56.80 -136.50 REMARK 500 SER B 30 -4.04 -145.11 REMARK 500 ARG B 53 50.38 37.82 REMARK 500 ASP B 54 -3.81 78.10 REMARK 500 GLU B 85 -77.12 -106.76 REMARK 500 PHE B 245 -62.10 -121.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASP B 121 ALA B 122 146.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 ASP B 108 14.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3EL6 RELATED DB: PDB REMARK 900 PROTEIN HOMOLOG REMARK 900 RELATED ID: 3KG6 RELATED DB: PDB REMARK 900 PROTEIN HOMOLOG REMARK 900 RELATED ID: 3KG7 RELATED DB: PDB REMARK 900 PROTEIN HOMOLOG REMARK 900 RELATED ID: 3KG8 RELATED DB: PDB REMARK 900 PROTEIN HOMOLOG REMARK 900 RELATED ID: 3KG9 RELATED DB: PDB REMARK 900 PROTEIN HOMOLOG DBREF 4LN9 A 2 305 UNP O54593 O54593_AMYMD 2569 2872 DBREF 4LN9 B 2 305 UNP O54593 O54593_AMYMD 2569 2872 SEQADV 4LN9 MET A -19 UNP O54593 EXPRESSION TAG SEQADV 4LN9 GLY A -18 UNP O54593 EXPRESSION TAG SEQADV 4LN9 SER A -17 UNP O54593 EXPRESSION TAG SEQADV 4LN9 SER A -16 UNP O54593 EXPRESSION TAG SEQADV 4LN9 HIS A -15 UNP O54593 EXPRESSION TAG SEQADV 4LN9 HIS A -14 UNP O54593 EXPRESSION TAG SEQADV 4LN9 HIS A -13 UNP O54593 EXPRESSION TAG SEQADV 4LN9 HIS A -12 UNP O54593 EXPRESSION TAG SEQADV 4LN9 HIS A -11 UNP O54593 EXPRESSION TAG SEQADV 4LN9 HIS A -10 UNP O54593 EXPRESSION TAG SEQADV 4LN9 SER A -9 UNP O54593 EXPRESSION TAG SEQADV 4LN9 SER A -8 UNP O54593 EXPRESSION TAG SEQADV 4LN9 GLY A -7 UNP O54593 EXPRESSION TAG SEQADV 4LN9 LEU A -6 UNP O54593 EXPRESSION TAG SEQADV 4LN9 VAL A -5 UNP O54593 EXPRESSION TAG SEQADV 4LN9 PRO A -4 UNP O54593 EXPRESSION TAG SEQADV 4LN9 ARG A -3 UNP O54593 EXPRESSION TAG SEQADV 4LN9 GLY A -2 UNP O54593 EXPRESSION TAG SEQADV 4LN9 SER A -1 UNP O54593 EXPRESSION TAG SEQADV 4LN9 HIS A 0 UNP O54593 EXPRESSION TAG SEQADV 4LN9 MET A 1 UNP O54593 EXPRESSION TAG SEQADV 4LN9 MET B -19 UNP O54593 EXPRESSION TAG SEQADV 4LN9 GLY B -18 UNP O54593 EXPRESSION TAG SEQADV 4LN9 SER B -17 UNP O54593 EXPRESSION TAG SEQADV 4LN9 SER B -16 UNP O54593 EXPRESSION TAG SEQADV 4LN9 HIS B -15 UNP O54593 EXPRESSION TAG SEQADV 4LN9 HIS B -14 UNP O54593 EXPRESSION TAG SEQADV 4LN9 HIS B -13 UNP O54593 EXPRESSION TAG SEQADV 4LN9 HIS B -12 UNP O54593 EXPRESSION TAG SEQADV 4LN9 HIS B -11 UNP O54593 EXPRESSION TAG SEQADV 4LN9 HIS B -10 UNP O54593 EXPRESSION TAG SEQADV 4LN9 SER B -9 UNP O54593 EXPRESSION TAG SEQADV 4LN9 SER B -8 UNP O54593 EXPRESSION TAG SEQADV 4LN9 GLY B -7 UNP O54593 EXPRESSION TAG SEQADV 4LN9 LEU B -6 UNP O54593 EXPRESSION TAG SEQADV 4LN9 VAL B -5 UNP O54593 EXPRESSION TAG SEQADV 4LN9 PRO B -4 UNP O54593 EXPRESSION TAG SEQADV 4LN9 ARG B -3 UNP O54593 EXPRESSION TAG SEQADV 4LN9 GLY B -2 UNP O54593 EXPRESSION TAG SEQADV 4LN9 SER B -1 UNP O54593 EXPRESSION TAG SEQADV 4LN9 HIS B 0 UNP O54593 EXPRESSION TAG SEQADV 4LN9 MET B 1 UNP O54593 EXPRESSION TAG SEQRES 1 A 325 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 325 LEU VAL PRO ARG GLY SER HIS MET ALA ASP THR ALA SER SEQRES 3 A 325 ASP ALA VAL SER LEU GLY LEU ALA GLY ALA ASP HIS PRO SEQRES 4 A 325 LEU LEU GLY ALA VAL VAL GLN LEU PRO GLN SER ASP GLY SEQRES 5 A 325 LEU VAL PHE THR SER ARG LEU SER LEU ARG SER HIS PRO SEQRES 6 A 325 TRP LEU ALA ASP HIS ALA VAL ARG ASP VAL VAL ILE VAL SEQRES 7 A 325 PRO GLY THR GLY LEU VAL GLU LEU ALA VAL ARG ALA GLY SEQRES 8 A 325 ASP GLU ALA GLY CYS PRO VAL LEU ASP GLU LEU VAL ILE SEQRES 9 A 325 GLU ALA PRO LEU VAL VAL PRO ARG ARG GLY GLY VAL ARG SEQRES 10 A 325 VAL GLN VAL ALA LEU GLY GLY PRO ALA ASP ASP GLY SER SEQRES 11 A 325 ARG THR VAL ASP VAL PHE SER LEU ARG GLU ASP ALA ASP SEQRES 12 A 325 SER TRP LEU ARG HIS ALA THR GLY VAL LEU VAL PRO GLU SEQRES 13 A 325 ASN ARG PRO ARG GLY THR ALA ALA PHE ASP PHE ALA ALA SEQRES 14 A 325 TRP PRO PRO PRO GLU ALA LYS PRO VAL ASP LEU THR GLY SEQRES 15 A 325 ALA TYR ASP VAL LEU ALA ASP VAL GLY TYR GLY TYR GLY SEQRES 16 A 325 PRO THR PHE ARG ALA VAL ARG ALA VAL TRP ARG ARG GLY SEQRES 17 A 325 SER GLY ASN THR THR GLU THR PHE ALA GLU ILE ALA LEU SEQRES 18 A 325 PRO GLU ASP ALA ARG ALA GLU ALA GLY ARG PHE GLY ILE SEQRES 19 A 325 HIS PRO ALA LEU LEU ASP ALA ALA LEU HIS SER THR MET SEQRES 20 A 325 VAL SER ALA ALA ALA ASP THR GLU SER TYR GLY ASP GLU SEQRES 21 A 325 VAL ARG LEU PRO PHE ALA TRP ASN GLY LEU ARG LEU HIS SEQRES 22 A 325 ALA ALA GLY ALA SER VAL LEU ARG VAL ARG VAL ALA LYS SEQRES 23 A 325 PRO GLU ARG ASP SER LEU SER LEU GLU ALA VAL ASP GLU SEQRES 24 A 325 SER GLY GLY LEU VAL VAL THR LEU ASP SER LEU VAL GLY SEQRES 25 A 325 ARG PRO VAL SER ASN ASP GLN LEU THR THR ALA ALA GLY SEQRES 1 B 325 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 B 325 LEU VAL PRO ARG GLY SER HIS MET ALA ASP THR ALA SER SEQRES 3 B 325 ASP ALA VAL SER LEU GLY LEU ALA GLY ALA ASP HIS PRO SEQRES 4 B 325 LEU LEU GLY ALA VAL VAL GLN LEU PRO GLN SER ASP GLY SEQRES 5 B 325 LEU VAL PHE THR SER ARG LEU SER LEU ARG SER HIS PRO SEQRES 6 B 325 TRP LEU ALA ASP HIS ALA VAL ARG ASP VAL VAL ILE VAL SEQRES 7 B 325 PRO GLY THR GLY LEU VAL GLU LEU ALA VAL ARG ALA GLY SEQRES 8 B 325 ASP GLU ALA GLY CYS PRO VAL LEU ASP GLU LEU VAL ILE SEQRES 9 B 325 GLU ALA PRO LEU VAL VAL PRO ARG ARG GLY GLY VAL ARG SEQRES 10 B 325 VAL GLN VAL ALA LEU GLY GLY PRO ALA ASP ASP GLY SER SEQRES 11 B 325 ARG THR VAL ASP VAL PHE SER LEU ARG GLU ASP ALA ASP SEQRES 12 B 325 SER TRP LEU ARG HIS ALA THR GLY VAL LEU VAL PRO GLU SEQRES 13 B 325 ASN ARG PRO ARG GLY THR ALA ALA PHE ASP PHE ALA ALA SEQRES 14 B 325 TRP PRO PRO PRO GLU ALA LYS PRO VAL ASP LEU THR GLY SEQRES 15 B 325 ALA TYR ASP VAL LEU ALA ASP VAL GLY TYR GLY TYR GLY SEQRES 16 B 325 PRO THR PHE ARG ALA VAL ARG ALA VAL TRP ARG ARG GLY SEQRES 17 B 325 SER GLY ASN THR THR GLU THR PHE ALA GLU ILE ALA LEU SEQRES 18 B 325 PRO GLU ASP ALA ARG ALA GLU ALA GLY ARG PHE GLY ILE SEQRES 19 B 325 HIS PRO ALA LEU LEU ASP ALA ALA LEU HIS SER THR MET SEQRES 20 B 325 VAL SER ALA ALA ALA ASP THR GLU SER TYR GLY ASP GLU SEQRES 21 B 325 VAL ARG LEU PRO PHE ALA TRP ASN GLY LEU ARG LEU HIS SEQRES 22 B 325 ALA ALA GLY ALA SER VAL LEU ARG VAL ARG VAL ALA LYS SEQRES 23 B 325 PRO GLU ARG ASP SER LEU SER LEU GLU ALA VAL ASP GLU SEQRES 24 B 325 SER GLY GLY LEU VAL VAL THR LEU ASP SER LEU VAL GLY SEQRES 25 B 325 ARG PRO VAL SER ASN ASP GLN LEU THR THR ALA ALA GLY FORMUL 3 HOH *310(H2 O) HELIX 1 1 ALA A 8 GLY A 12 5 5 HELIX 2 2 HIS A 44 ALA A 48 5 5 HELIX 3 3 PRO A 59 ALA A 74 1 16 HELIX 4 4 GLY A 162 GLY A 171 1 10 HELIX 5 5 PRO A 202 ASP A 204 5 3 HELIX 6 6 ALA A 205 GLY A 210 1 6 HELIX 7 7 HIS A 215 ALA A 232 1 18 HELIX 8 8 ALA B 8 GLY B 12 5 5 HELIX 9 9 HIS B 44 ALA B 48 5 5 HELIX 10 10 PRO B 59 ALA B 74 1 16 HELIX 11 11 GLY B 162 GLY B 171 1 10 HELIX 12 12 SER B 189 THR B 193 5 5 HELIX 13 13 PRO B 202 GLU B 208 1 7 HELIX 14 14 ALA B 209 PHE B 212 5 4 HELIX 15 15 HIS B 215 ALA B 231 1 17 SHEET 1 A14 ALA A 14 HIS A 18 0 SHEET 2 A14 LEU A 21 GLN A 26 -1 O VAL A 24 N ALA A 14 SHEET 3 A14 LEU A 33 LEU A 39 -1 O THR A 36 N GLY A 22 SHEET 4 A14 VAL A 96 LEU A 102 -1 O VAL A 98 N SER A 37 SHEET 5 A14 ARG A 111 ARG A 119 -1 O ASP A 114 N ALA A 101 SHEET 6 A14 LEU A 126 VAL A 134 -1 O HIS A 128 N VAL A 115 SHEET 7 A14 VAL A 78 ILE A 84 -1 N VAL A 83 O THR A 130 SHEET 8 A14 LEU A 243 LEU A 252 -1 O TRP A 247 N LEU A 82 SHEET 9 A14 LEU A 283 ARG A 293 -1 O SER A 289 N ASN A 248 SHEET 10 A14 SER A 271 VAL A 277 -1 N ALA A 276 O VAL A 284 SHEET 11 A14 VAL A 259 ALA A 265 -1 N ALA A 265 O SER A 273 SHEET 12 A14 GLU A 194 ALA A 200 -1 N THR A 195 O VAL A 264 SHEET 13 A14 VAL A 181 ARG A 187 -1 N ARG A 182 O GLU A 198 SHEET 14 A14 LYS A 156 VAL A 158 -1 N VAL A 158 O VAL A 184 SHEET 1 B 3 VAL A 55 VAL A 56 0 SHEET 2 B 3 HIS A 50 VAL A 52 -1 N VAL A 52 O VAL A 55 SHEET 3 B 3 TYR A 172 TYR A 174 -1 O GLY A 173 N ALA A 51 SHEET 1 C14 ALA B 14 HIS B 18 0 SHEET 2 C14 LEU B 21 GLN B 26 -1 O VAL B 24 N ALA B 14 SHEET 3 C14 LEU B 33 LEU B 39 -1 O THR B 36 N ALA B 23 SHEET 4 C14 VAL B 96 LEU B 102 -1 O VAL B 98 N SER B 37 SHEET 5 C14 ARG B 111 LEU B 118 -1 O ASP B 114 N ALA B 101 SHEET 6 C14 LEU B 126 VAL B 134 -1 O HIS B 128 N VAL B 115 SHEET 7 C14 VAL B 78 ILE B 84 -1 N VAL B 83 O THR B 130 SHEET 8 C14 ALA B 246 LEU B 252 -1 O TRP B 247 N LEU B 82 SHEET 9 C14 LEU B 283 VAL B 291 -1 O SER B 289 N ASN B 248 SHEET 10 C14 SER B 271 VAL B 277 -1 N ALA B 276 O VAL B 284 SHEET 11 C14 VAL B 259 ALA B 265 -1 N ARG B 263 O GLU B 275 SHEET 12 C14 GLU B 194 ALA B 200 -1 N THR B 195 O VAL B 264 SHEET 13 C14 VAL B 181 ARG B 187 -1 N TRP B 185 O PHE B 196 SHEET 14 C14 LYS B 156 PRO B 157 -1 N LYS B 156 O ARG B 186 SHEET 1 D 4 LEU B 88 VAL B 89 0 SHEET 2 D 4 VAL B 55 VAL B 58 -1 N VAL B 58 O LEU B 88 SHEET 3 D 4 HIS B 50 VAL B 52 -1 N VAL B 52 O VAL B 55 SHEET 4 D 4 TYR B 172 TYR B 174 -1 O GLY B 173 N ALA B 51 CISPEP 1 TRP A 150 PRO A 151 0 -9.72 CISPEP 2 TRP B 150 PRO B 151 0 -10.26 CRYST1 77.180 77.180 97.920 90.00 90.00 120.00 P 32 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012957 0.007481 0.000000 0.00000 SCALE2 0.000000 0.014961 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010212 0.00000