HEADER TRANSFERASE 11-JUL-13 4LNA TITLE CRYSTAL STRUCTURE OF PURINE NUCLEOSIDE PHOSPHORYLASE I FROM SPIROSOMA TITLE 2 LINGUALE DSM 74, NYSGRC TARGET 029362 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PURINE NUCLEOSIDE PHOSPHORYLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: INOSINE-GUANOSINE PHOSPHORYLASE; COMPND 5 EC: 2.4.2.1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SPIROSOMA LINGUALE; SOURCE 3 ORGANISM_TAXID: 504472; SOURCE 4 STRAIN: DSM 74; SOURCE 5 GENE: 8727701, SLIN_3943; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)CODON+RIL; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: BC-PSGX3(BC) KEYWDS STRUCTURAL GENOMICS, PROTEIN STRUCTURE INITIATIVE, NYSGRC, PSI- KEYWDS 2 BIOLOGY, NEW YORK STRUCTURAL GENOMICS RESEARCH CONSORTIUM, KEYWDS 3 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR V.N.MALASHKEVICH,J.B.BONANNO,R.BHOSLE,R.TORO,B.HILLERICH,A.GIZZI, AUTHOR 2 S.GARFORTH,A.KAR,M.K.CHAN,J.LAFLUER,H.PATEL,B.MATIKAINEN,S.CHAMALA, AUTHOR 3 S.LIM,A.CELIKGIL,G.VILLEGAS,B.EVANS,J.LOVE,A.FISER,K.KHAFIZOV, AUTHOR 4 R.SEIDEL,S.C.ALMO,NEW YORK STRUCTURAL GENOMICS RESEARCH CONSORTIUM AUTHOR 5 (NYSGRC) REVDAT 3 06-DEC-23 4LNA 1 REMARK REVDAT 2 20-SEP-23 4LNA 1 REMARK SEQADV LINK REVDAT 1 24-JUL-13 4LNA 0 JRNL AUTH V.N.MALASHKEVICH,J.B.BONANNO,R.BHOSLE,R.TORO,B.HILLERICH, JRNL AUTH 2 A.GIZZI,S.GARFORTH,A.KAR,M.K.CHAN,J.LAFLUER,H.PATEL, JRNL AUTH 3 B.MATIKAINEN,S.CHAMALA,S.LIM,A.CELIKGIL,G.VILLEGAS,B.EVANS, JRNL AUTH 4 J.LOVE,A.FISER,K.KHAFIZOV,R.SEIDEL,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF PURINE NUCLEOSIDE PHOSPHORYLASE I FROM JRNL TITL 2 SPIROSOMA LINGUALE DSM 74, NYSGRC TARGET 029362 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 20288 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1040 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1377 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.1840 REMARK 3 BIN FREE R VALUE SET COUNT : 88 REMARK 3 BIN FREE R VALUE : 0.2190 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2071 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 29 REMARK 3 SOLVENT ATOMS : 136 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.172 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.158 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.098 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2152 ; 0.009 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2933 ; 1.469 ; 2.023 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 273 ; 5.521 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 81 ;41.596 ;24.444 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 335 ;13.336 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;20.580 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 349 ; 0.077 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1577 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1080 ; 1.994 ; 5.483 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1348 ; 3.246 ;73.693 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1071 ; 3.251 ; 6.072 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 271 REMARK 3 ORIGIN FOR THE GROUP (A): -15.5475 9.4704 11.6413 REMARK 3 T TENSOR REMARK 3 T11: 0.0115 T22: 0.0642 REMARK 3 T33: 0.0269 T12: 0.0116 REMARK 3 T13: 0.0126 T23: 0.0107 REMARK 3 L TENSOR REMARK 3 L11: 1.2935 L22: 0.8334 REMARK 3 L33: 0.9311 L12: -0.0614 REMARK 3 L13: 0.3670 L23: -0.2599 REMARK 3 S TENSOR REMARK 3 S11: 0.0196 S12: -0.1495 S13: 0.0031 REMARK 3 S21: 0.0481 S22: 0.0725 S23: 0.1188 REMARK 3 S31: -0.0716 S32: -0.2025 S33: -0.0921 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN USED IF PRESENT IN THE INPUT REMARK 4 REMARK 4 4LNA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-JUL-13. REMARK 100 THE DEPOSITION ID IS D_1000080843. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-APR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20392 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 41.90 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 42.80 REMARK 200 R MERGE FOR SHELL (I) : 0.54800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1M73 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M SODIUM PHOSPHATE DIBASIC, 20% REMARK 280 PEG3350, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 3 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 Y+1/4,X+3/4,-Z+3/4 REMARK 290 14555 -Y+1/4,-X+1/4,-Z+1/4 REMARK 290 15555 Y+3/4,-X+3/4,Z+1/4 REMARK 290 16555 -Y+3/4,X+1/4,Z+3/4 REMARK 290 17555 X+1/4,Z+3/4,-Y+3/4 REMARK 290 18555 -X+3/4,Z+1/4,Y+3/4 REMARK 290 19555 -X+1/4,-Z+1/4,-Y+1/4 REMARK 290 20555 X+3/4,-Z+3/4,Y+1/4 REMARK 290 21555 Z+1/4,Y+3/4,-X+3/4 REMARK 290 22555 Z+3/4,-Y+3/4,X+1/4 REMARK 290 23555 -Z+3/4,Y+1/4,X+3/4 REMARK 290 24555 -Z+1/4,-Y+1/4,-X+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 62.78050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.78050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 62.78050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 62.78050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 62.78050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 62.78050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 62.78050 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 62.78050 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 62.78050 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 62.78050 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 62.78050 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 62.78050 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 62.78050 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 62.78050 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 62.78050 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 62.78050 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 62.78050 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 62.78050 REMARK 290 SMTRY1 13 0.000000 1.000000 0.000000 31.39025 REMARK 290 SMTRY2 13 1.000000 0.000000 0.000000 94.17075 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 94.17075 REMARK 290 SMTRY1 14 0.000000 -1.000000 0.000000 31.39025 REMARK 290 SMTRY2 14 -1.000000 0.000000 0.000000 31.39025 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 31.39025 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 94.17075 REMARK 290 SMTRY2 15 -1.000000 0.000000 0.000000 94.17075 REMARK 290 SMTRY3 15 0.000000 0.000000 1.000000 31.39025 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 94.17075 REMARK 290 SMTRY2 16 1.000000 0.000000 0.000000 31.39025 REMARK 290 SMTRY3 16 0.000000 0.000000 1.000000 94.17075 REMARK 290 SMTRY1 17 1.000000 0.000000 0.000000 31.39025 REMARK 290 SMTRY2 17 0.000000 0.000000 1.000000 94.17075 REMARK 290 SMTRY3 17 0.000000 -1.000000 0.000000 94.17075 REMARK 290 SMTRY1 18 -1.000000 0.000000 0.000000 94.17075 REMARK 290 SMTRY2 18 0.000000 0.000000 1.000000 31.39025 REMARK 290 SMTRY3 18 0.000000 1.000000 0.000000 94.17075 REMARK 290 SMTRY1 19 -1.000000 0.000000 0.000000 31.39025 REMARK 290 SMTRY2 19 0.000000 0.000000 -1.000000 31.39025 REMARK 290 SMTRY3 19 0.000000 -1.000000 0.000000 31.39025 REMARK 290 SMTRY1 20 1.000000 0.000000 0.000000 94.17075 REMARK 290 SMTRY2 20 0.000000 0.000000 -1.000000 94.17075 REMARK 290 SMTRY3 20 0.000000 1.000000 0.000000 31.39025 REMARK 290 SMTRY1 21 0.000000 0.000000 1.000000 31.39025 REMARK 290 SMTRY2 21 0.000000 1.000000 0.000000 94.17075 REMARK 290 SMTRY3 21 -1.000000 0.000000 0.000000 94.17075 REMARK 290 SMTRY1 22 0.000000 0.000000 1.000000 94.17075 REMARK 290 SMTRY2 22 0.000000 -1.000000 0.000000 94.17075 REMARK 290 SMTRY3 22 1.000000 0.000000 0.000000 31.39025 REMARK 290 SMTRY1 23 0.000000 0.000000 -1.000000 94.17075 REMARK 290 SMTRY2 23 0.000000 1.000000 0.000000 31.39025 REMARK 290 SMTRY3 23 1.000000 0.000000 0.000000 94.17075 REMARK 290 SMTRY1 24 0.000000 0.000000 -1.000000 31.39025 REMARK 290 SMTRY2 24 0.000000 -1.000000 0.000000 31.39025 REMARK 290 SMTRY3 24 -1.000000 0.000000 0.000000 31.39025 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: TRIMERIC REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10820 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29700 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -139.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CL CL A 504 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 671 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 699 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 710 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 721 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 SER A -14 REMARK 465 SER A -13 REMARK 465 GLY A -12 REMARK 465 VAL A -11 REMARK 465 ASP A -10 REMARK 465 LEU A -9 REMARK 465 GLY A -8 REMARK 465 THR A -7 REMARK 465 GLU A -6 REMARK 465 ASN A -5 REMARK 465 LEU A -4 REMARK 465 TYR A -3 REMARK 465 PHE A -2 REMARK 465 GLN A -1 REMARK 465 GLU A 57 REMARK 465 PHE A 58 REMARK 465 HIS A 59 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 50 -0.95 65.49 REMARK 500 SER A 54 85.20 60.52 REMARK 500 SER A 122 -6.59 83.82 REMARK 500 THR A 212 -51.39 79.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADE A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 504 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGRC-029362 RELATED DB: TARGETTRACK DBREF 4LNA A 1 271 UNP D2QIK7 D2QIK7_SPILD 1 271 SEQADV 4LNA MSE A -21 UNP D2QIK7 EXPRESSION TAG SEQADV 4LNA HIS A -20 UNP D2QIK7 EXPRESSION TAG SEQADV 4LNA HIS A -19 UNP D2QIK7 EXPRESSION TAG SEQADV 4LNA HIS A -18 UNP D2QIK7 EXPRESSION TAG SEQADV 4LNA HIS A -17 UNP D2QIK7 EXPRESSION TAG SEQADV 4LNA HIS A -16 UNP D2QIK7 EXPRESSION TAG SEQADV 4LNA HIS A -15 UNP D2QIK7 EXPRESSION TAG SEQADV 4LNA SER A -14 UNP D2QIK7 EXPRESSION TAG SEQADV 4LNA SER A -13 UNP D2QIK7 EXPRESSION TAG SEQADV 4LNA GLY A -12 UNP D2QIK7 EXPRESSION TAG SEQADV 4LNA VAL A -11 UNP D2QIK7 EXPRESSION TAG SEQADV 4LNA ASP A -10 UNP D2QIK7 EXPRESSION TAG SEQADV 4LNA LEU A -9 UNP D2QIK7 EXPRESSION TAG SEQADV 4LNA GLY A -8 UNP D2QIK7 EXPRESSION TAG SEQADV 4LNA THR A -7 UNP D2QIK7 EXPRESSION TAG SEQADV 4LNA GLU A -6 UNP D2QIK7 EXPRESSION TAG SEQADV 4LNA ASN A -5 UNP D2QIK7 EXPRESSION TAG SEQADV 4LNA LEU A -4 UNP D2QIK7 EXPRESSION TAG SEQADV 4LNA TYR A -3 UNP D2QIK7 EXPRESSION TAG SEQADV 4LNA PHE A -2 UNP D2QIK7 EXPRESSION TAG SEQADV 4LNA GLN A -1 UNP D2QIK7 EXPRESSION TAG SEQADV 4LNA SER A 0 UNP D2QIK7 EXPRESSION TAG SEQRES 1 A 293 MSE HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 293 GLY THR GLU ASN LEU TYR PHE GLN SER MSE PHE GLU GLN SEQRES 3 A 293 ILE GLN GLU THR THR GLN PHE ILE GLN SER LYS ILE THR SEQRES 4 A 293 LEU ARG PRO ALA ILE GLY ILE ILE LEU GLY THR GLY LEU SEQRES 5 A 293 GLY ALA LEU THR ASN GLU LEU ASP ILE ASP THR THR ILE SEQRES 6 A 293 PRO TYR GLU THR ILE PRO HIS PHE PRO LEU SER THR VAL SEQRES 7 A 293 GLU PHE HIS SER GLY LYS LEU LEU ILE GLY THR LEU GLY SEQRES 8 A 293 GLY LYS SER VAL VAL VAL MSE GLN GLY ARG PHE HIS TYR SEQRES 9 A 293 TYR GLU GLY TYR THR MSE GLN GLN VAL THR TYR PRO VAL SEQRES 10 A 293 ARG VAL MSE HIS ALA LEU GLY ILE GLN THR LEU LEU VAL SEQRES 11 A 293 SER ASN ALA ALA GLY GLY MSE ASN PRO THR PHE GLN THR SEQRES 12 A 293 SER ASP LEU MSE VAL ILE ASP ASP HIS ILE SER LEU LEU SEQRES 13 A 293 LEU PRO GLN ASN PRO LEU ILE CYS PRO ASN PRO PRO ILE SEQRES 14 A 293 PHE GLY ASP ARG PHE PRO ASP MSE SER GLU PRO TYR ARG SEQRES 15 A 293 LYS SER LEU ILE ASP LEU ALA PHE SER VAL ALA ALA GLU SEQRES 16 A 293 LEU ASP ILE PRO LEU LYS ARG GLY VAL TYR VAL SER VAL SEQRES 17 A 293 THR GLY PRO GLN LEU GLU THR ARG ALA GLU TYR ARG MSE SEQRES 18 A 293 LEU ARG GLN TRP GLY ALA ASP ALA VAL GLY MSE SER THR SEQRES 19 A 293 VAL PRO GLU VAL ILE VAL ALA ASN GLN LEU GLY MSE ASP SEQRES 20 A 293 VAL PHE GLY ILE SER VAL ILE THR ASP LEU CYS PHE PRO SEQRES 21 A 293 ASP THR LEU GLU LYS ALA GLU LEU VAL LYS ILE LEU ALA SEQRES 22 A 293 THR ALA ALA GLN ALA GLU PRO LYS LEU THR MSE LEU ILE SEQRES 23 A 293 ARG GLU MSE ILE GLY ARG LEU MODRES 4LNA MSE A 1 MET SELENOMETHIONINE MODRES 4LNA MSE A 76 MET SELENOMETHIONINE MODRES 4LNA MSE A 88 MET SELENOMETHIONINE MODRES 4LNA MSE A 98 MET SELENOMETHIONINE MODRES 4LNA MSE A 115 MET SELENOMETHIONINE MODRES 4LNA MSE A 125 MET SELENOMETHIONINE MODRES 4LNA MSE A 155 MET SELENOMETHIONINE MODRES 4LNA MSE A 199 MET SELENOMETHIONINE MODRES 4LNA MSE A 210 MET SELENOMETHIONINE MODRES 4LNA MSE A 224 MET SELENOMETHIONINE MODRES 4LNA MSE A 262 MET SELENOMETHIONINE MODRES 4LNA MSE A 267 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 76 8 HET MSE A 88 8 HET MSE A 98 8 HET MSE A 115 8 HET MSE A 125 8 HET MSE A 155 8 HET MSE A 199 8 HET MSE A 210 8 HET MSE A 224 8 HET MSE A 262 8 HET MSE A 267 8 HET PO4 A 500 5 HET PO4 A 501 5 HET ADE A 502 10 HET MPD A 503 8 HET CL A 504 1 HETNAM MSE SELENOMETHIONINE HETNAM PO4 PHOSPHATE ION HETNAM ADE ADENINE HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL HETNAM CL CHLORIDE ION FORMUL 1 MSE 12(C5 H11 N O2 SE) FORMUL 2 PO4 2(O4 P 3-) FORMUL 4 ADE C5 H5 N5 FORMUL 5 MPD C6 H14 O2 FORMUL 6 CL CL 1- FORMUL 7 HOH *136(H2 O) HELIX 1 1 SER A 0 ILE A 16 1 17 HELIX 2 2 ALA A 32 LEU A 37 1 6 HELIX 3 3 GLU A 46 ILE A 48 5 3 HELIX 4 4 HIS A 81 GLY A 85 5 5 HELIX 5 5 THR A 87 GLY A 102 1 16 HELIX 6 6 ARG A 160 LEU A 174 1 15 HELIX 7 7 THR A 193 TRP A 203 1 11 HELIX 8 8 THR A 212 LEU A 222 1 11 HELIX 9 9 PHE A 237 LEU A 241 5 5 HELIX 10 10 GLU A 245 LEU A 271 1 27 SHEET 1 A10 ASP A 38 PRO A 44 0 SHEET 2 A10 LYS A 62 LEU A 68 -1 O LEU A 63 N ILE A 43 SHEET 3 A10 LYS A 71 GLN A 77 -1 O GLN A 77 N LYS A 62 SHEET 4 A10 ILE A 22 LEU A 26 1 N ILE A 24 O MSE A 76 SHEET 5 A10 THR A 105 GLY A 114 1 O THR A 105 N GLY A 23 SHEET 6 A10 ASP A 225 LEU A 235 1 O ASP A 225 N LEU A 106 SHEET 7 A10 LEU A 124 ILE A 131 -1 N MSE A 125 O SER A 230 SHEET 8 A10 LYS A 179 SER A 185 1 O LYS A 179 N VAL A 126 SHEET 9 A10 ALA A 207 GLY A 209 1 O ALA A 207 N VAL A 184 SHEET 10 A10 THR A 105 GLY A 114 -1 N GLY A 113 O VAL A 208 LINK C SER A 0 N MSE A 1 1555 1555 1.33 LINK C MSE A 1 N PHE A 2 1555 1555 1.34 LINK C VAL A 75 N MSE A 76 1555 1555 1.33 LINK C MSE A 76 N GLN A 77 1555 1555 1.33 LINK C THR A 87 N MSE A 88 1555 1555 1.34 LINK C MSE A 88 N GLN A 89 1555 1555 1.33 LINK C VAL A 97 N MSE A 98 1555 1555 1.34 LINK C MSE A 98 N HIS A 99 1555 1555 1.33 LINK C GLY A 114 N MSE A 115 1555 1555 1.34 LINK C MSE A 115 N ASN A 116 1555 1555 1.33 LINK C LEU A 124 N MSE A 125 1555 1555 1.33 LINK C MSE A 125 N VAL A 126 1555 1555 1.33 LINK C ASP A 154 N MSE A 155 1555 1555 1.33 LINK C MSE A 155 N SER A 156 1555 1555 1.33 LINK C ARG A 198 N MSE A 199 1555 1555 1.33 LINK C MSE A 199 N LEU A 200 1555 1555 1.34 LINK C GLY A 209 N MSE A 210 1555 1555 1.32 LINK C MSE A 210 N SER A 211 1555 1555 1.34 LINK C GLY A 223 N MSE A 224 1555 1555 1.33 LINK C MSE A 224 N ASP A 225 1555 1555 1.33 LINK C THR A 261 N MSE A 262 1555 1555 1.33 LINK C MSE A 262 N LEU A 263 1555 1555 1.34 LINK C GLU A 266 N MSE A 267 1555 1555 1.34 LINK C MSE A 267 N ILE A 268 1555 1555 1.33 CISPEP 1 GLY A 188 PRO A 189 0 7.90 SITE 1 AC1 11 GLY A 27 THR A 28 ARG A 79 HIS A 81 SITE 2 AC1 11 ASN A 110 ALA A 111 SER A 211 MPD A 503 SITE 3 AC1 11 HOH A 619 HOH A 648 HOH A 656 SITE 1 AC2 3 LEU A 18 ARG A 19 SER A 72 SITE 1 AC3 13 ALA A 111 ALA A 112 GLY A 113 GLU A 192 SITE 2 AC3 13 TYR A 197 VAL A 208 GLY A 209 MSE A 210 SITE 3 AC3 13 THR A 233 ASP A 234 CYS A 236 MPD A 503 SITE 4 AC3 13 HOH A 619 SITE 1 AC4 4 MSE A 210 PO4 A 500 ADE A 502 HOH A 656 SITE 1 AC5 2 GLN A 202 TRP A 203 CRYST1 125.561 125.561 125.561 90.00 90.00 90.00 P 43 3 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007964 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007964 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007964 0.00000