HEADER TRANSFERASE 11-JUL-13 4LNB TITLE ASPERGILLUS FUMIGATUS PROTEIN FARNESYLTRANSFERASE TERNARY COMPLEX WITH TITLE 2 FARNESYLDIPHOSPHATE AND ETHYLENEDIAMINE SCAFFOLD INHIBITOR 5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAAX FARNESYLTRANSFERASE ALPHA SUBUNIT RAM2; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 15-367; COMPND 5 EC: 2.5.1.-; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: CAAX FARNESYLTRANSFERASE BETA SUBUNIT RAM1; COMPND 10 CHAIN: B; COMPND 11 EC: 2.5.1.58; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ASPERGILLUS FUMIGATUS; SOURCE 3 ORGANISM_TAXID: 330879; SOURCE 4 STRAIN: ATCC MYA-4609 / AF293 / CBS 101355 / FGSC A1100; SOURCE 5 GENE: AFUA_4G07800, NCBI LOCUS XM_746952 RAM2 GENE; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: C41; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PCDF DUET1; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: ASPERGILLUS FUMIGATUS; SOURCE 13 ORGANISM_TAXID: 330879; SOURCE 14 STRAIN: ATCC MYA-4609 / AF293 / CBS 101355 / FGSC A1100; SOURCE 15 GENE: AFUA_4G10330, NCBI LOCUS XM_746700 RAM1 GENE; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: C41; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PCDF DUET1 KEYWDS ISOPRENOID AND CAAX-CONTAINING PROTEIN SUBSTRATE, FARNESYLATION, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.F.MABANGLO,M.A.HAST,L.S.BEESE REVDAT 3 28-FEB-24 4LNB 1 REMARK SEQADV LINK REVDAT 2 26-MAR-14 4LNB 1 JRNL REVDAT 1 01-JAN-14 4LNB 0 JRNL AUTH M.F.MABANGLO,M.A.HAST,N.B.LUBOCK,H.W.HELLINGA,L.S.BEESE JRNL TITL CRYSTAL STRUCTURES OF THE FUNGAL PATHOGEN ASPERGILLUS JRNL TITL 2 FUMIGATUS PROTEIN FARNESYLTRANSFERASE COMPLEXED WITH JRNL TITL 3 SUBSTRATES AND INHIBITORS REVEAL FEATURES FOR ANTIFUNGAL JRNL TITL 4 DRUG DESIGN. JRNL REF PROTEIN SCI. V. 23 289 2014 JRNL REFN ISSN 0961-8368 JRNL PMID 24347326 JRNL DOI 10.1002/PRO.2411 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8_1069) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.07 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.1 REMARK 3 NUMBER OF REFLECTIONS : 83312 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.161 REMARK 3 R VALUE (WORKING SET) : 0.159 REMARK 3 FREE R VALUE : 0.184 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.960 REMARK 3 FREE R VALUE TEST SET COUNT : 3882 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.0744 - 5.4372 0.99 2891 137 0.1620 0.1677 REMARK 3 2 5.4372 - 4.3178 1.00 2842 130 0.1423 0.1544 REMARK 3 3 4.3178 - 3.7726 1.00 2810 144 0.1369 0.1405 REMARK 3 4 3.7726 - 3.4280 1.00 2829 149 0.1416 0.1655 REMARK 3 5 3.4280 - 3.1824 1.00 2771 156 0.1528 0.1698 REMARK 3 6 3.1824 - 2.9949 1.00 2831 131 0.1529 0.1829 REMARK 3 7 2.9949 - 2.8449 1.00 2815 142 0.1594 0.1839 REMARK 3 8 2.8449 - 2.7211 1.00 2824 139 0.1555 0.1835 REMARK 3 9 2.7211 - 2.6164 0.99 2803 119 0.1559 0.2057 REMARK 3 10 2.6164 - 2.5261 1.00 2758 143 0.1522 0.1695 REMARK 3 11 2.5261 - 2.4472 0.99 2816 136 0.1511 0.1705 REMARK 3 12 2.4472 - 2.3772 0.99 2791 137 0.1493 0.2027 REMARK 3 13 2.3772 - 2.3147 0.99 2774 152 0.1526 0.1946 REMARK 3 14 2.3147 - 2.2582 0.99 2746 156 0.1516 0.2077 REMARK 3 15 2.2582 - 2.2069 0.99 2783 145 0.1549 0.1814 REMARK 3 16 2.2069 - 2.1599 0.99 2778 146 0.1517 0.1751 REMARK 3 17 2.1599 - 2.1167 0.99 2751 143 0.1599 0.1922 REMARK 3 18 2.1167 - 2.0768 0.99 2751 152 0.1613 0.1985 REMARK 3 19 2.0768 - 2.0397 0.98 2723 148 0.1675 0.2012 REMARK 3 20 2.0397 - 2.0051 0.98 2755 161 0.1683 0.1890 REMARK 3 21 2.0051 - 1.9728 0.97 2700 139 0.1893 0.2323 REMARK 3 22 1.9728 - 1.9424 0.97 2708 157 0.1874 0.2297 REMARK 3 23 1.9424 - 1.9138 0.96 2669 128 0.2002 0.2103 REMARK 3 24 1.9138 - 1.8869 0.95 2658 156 0.2052 0.2453 REMARK 3 25 1.8869 - 1.8614 0.91 2526 140 0.2107 0.2598 REMARK 3 26 1.8614 - 1.8372 0.87 2419 139 0.2238 0.2571 REMARK 3 27 1.8372 - 1.8143 0.82 2273 129 0.2406 0.2922 REMARK 3 28 1.8143 - 1.7924 0.75 2088 122 0.2516 0.2747 REMARK 3 29 1.7924 - 1.7716 0.67 1890 101 0.2806 0.3206 REMARK 3 30 1.7716 - 1.7516 0.50 1407 55 0.3287 0.3333 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.540 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.003 6577 REMARK 3 ANGLE : 0.782 8952 REMARK 3 CHIRALITY : 0.059 935 REMARK 3 PLANARITY : 0.003 1155 REMARK 3 DIHEDRAL : 12.211 2431 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 25.1534 -9.3097 9.4626 REMARK 3 T TENSOR REMARK 3 T11: 0.0960 T22: 0.0725 REMARK 3 T33: 0.0980 T12: 0.0052 REMARK 3 T13: -0.0012 T23: 0.0086 REMARK 3 L TENSOR REMARK 3 L11: 0.6844 L22: 0.5396 REMARK 3 L33: 0.4927 L12: 0.0084 REMARK 3 L13: -0.0665 L23: 0.1144 REMARK 3 S TENSOR REMARK 3 S11: -0.0054 S12: -0.0115 S13: 0.0087 REMARK 3 S21: -0.0244 S22: -0.0073 S23: 0.0289 REMARK 3 S31: 0.0183 S32: -0.0160 S33: 0.0075 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4LNB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-JUL-13. REMARK 100 THE DEPOSITION ID IS D_1000080844. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-JUN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL LIQUID NITROGEN REMARK 200 COOLED REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 85716 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.26 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4-10% PEG6000, 600-800 MM LICL, 100 MM REMARK 280 HEPES, PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 45.62650 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29910 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -40.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -13 REMARK 465 GLY A -12 REMARK 465 SER A -11 REMARK 465 SER A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 SER A -3 REMARK 465 GLN A -2 REMARK 465 ASP A -1 REMARK 465 PRO A 0 REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 LYS A 276 REMARK 465 GLN A 277 REMARK 465 GLU A 278 REMARK 465 ASN A 279 REMARK 465 GLY A 280 REMARK 465 GLN A 281 REMARK 465 VAL A 282 REMARK 465 VAL A 283 REMARK 465 SER A 350 REMARK 465 ALA A 351 REMARK 465 SER A 352 REMARK 465 ALA A 353 REMARK 465 MET B 23 REMARK 465 PRO B 24 REMARK 465 VAL B 25 REMARK 465 ILE B 26 REMARK 465 ALA B 27 REMARK 465 ALA B 28 REMARK 465 THR B 29 REMARK 465 GLY B 30 REMARK 465 LYS B 31 REMARK 465 HIS B 32 REMARK 465 ARG B 33 REMARK 465 ARG B 34 REMARK 465 LYS B 35 REMARK 465 VAL B 36 REMARK 465 LEU B 37 REMARK 465 PHE B 38 REMARK 465 SER B 39 REMARK 465 SER B 40 REMARK 465 THR B 41 REMARK 465 SER B 42 REMARK 465 GLN B 43 REMARK 465 GLY B 44 REMARK 465 LEU B 45 REMARK 465 SER B 46 REMARK 465 VAL B 47 REMARK 465 THR B 48 REMARK 465 ALA B 49 REMARK 465 GLY B 50 REMARK 465 LYS B 51 REMARK 465 PRO B 52 REMARK 465 LYS B 53 REMARK 465 GLY B 54 REMARK 465 ARG B 55 REMARK 465 LYS B 56 REMARK 465 PHE B 57 REMARK 465 SER B 58 REMARK 465 ALA B 59 REMARK 465 ASN B 60 REMARK 465 LEU B 61 REMARK 465 GLN B 62 REMARK 465 VAL B 63 REMARK 465 ASN B 64 REMARK 465 SER B 65 REMARK 465 ARG B 66 REMARK 465 SER B 67 REMARK 465 PRO B 68 REMARK 465 ALA B 69 REMARK 465 VAL B 70 REMARK 465 THR B 71 REMARK 465 SER B 72 REMARK 465 SER B 73 REMARK 465 HIS B 74 REMARK 465 ASN B 75 REMARK 465 HIS B 76 REMARK 465 SER B 77 REMARK 465 SER B 78 REMARK 465 SER B 79 REMARK 465 SER B 80 REMARK 465 GLN B 81 REMARK 465 SER B 82 REMARK 465 GLY B 83 REMARK 465 LYS B 84 REMARK 465 MET B 85 REMARK 465 GLY B 86 REMARK 465 GLU B 87 REMARK 465 SER B 88 REMARK 465 GLN B 89 REMARK 465 GLY B 413 REMARK 465 PRO B 414 REMARK 465 LYS B 415 REMARK 465 ASP B 481 REMARK 465 ASP B 482 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 21 CB - CG - OD1 ANGL. DEV. = 7.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 24 -37.59 -130.05 REMARK 500 ALA A 241 87.08 -163.79 REMARK 500 GLU A 302 -64.81 -103.52 REMARK 500 LYS A 323 -50.49 -133.76 REMARK 500 ASP A 325 61.66 -154.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 602 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 387 OD2 REMARK 620 2 ASP B 387 OD1 56.3 REMARK 620 3 CYS B 389 SG 103.7 87.5 REMARK 620 4 HIS B 455 NE2 121.8 89.2 121.6 REMARK 620 5 ED5 B 603 NBC 95.0 151.3 100.2 109.3 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FPP B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ED5 B 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 605 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4L9P RELATED DB: PDB REMARK 900 RELATED ID: 4LNG RELATED DB: PDB DBREF 4LNB A 1 353 UNP Q4WP27 Q4WP27_ASPFU 1 353 DBREF 4LNB B 23 519 UNP Q4WPS9 Q4WPS9_ASPFU 1 519 SEQADV 4LNB MET A -13 UNP Q4WP27 INITIATING METHIONINE SEQADV 4LNB GLY A -12 UNP Q4WP27 EXPRESSION TAG SEQADV 4LNB SER A -11 UNP Q4WP27 EXPRESSION TAG SEQADV 4LNB SER A -10 UNP Q4WP27 EXPRESSION TAG SEQADV 4LNB HIS A -9 UNP Q4WP27 EXPRESSION TAG SEQADV 4LNB HIS A -8 UNP Q4WP27 EXPRESSION TAG SEQADV 4LNB HIS A -7 UNP Q4WP27 EXPRESSION TAG SEQADV 4LNB HIS A -6 UNP Q4WP27 EXPRESSION TAG SEQADV 4LNB HIS A -5 UNP Q4WP27 EXPRESSION TAG SEQADV 4LNB HIS A -4 UNP Q4WP27 EXPRESSION TAG SEQADV 4LNB SER A -3 UNP Q4WP27 EXPRESSION TAG SEQADV 4LNB GLN A -2 UNP Q4WP27 EXPRESSION TAG SEQADV 4LNB ASP A -1 UNP Q4WP27 EXPRESSION TAG SEQADV 4LNB PRO A 0 UNP Q4WP27 EXPRESSION TAG SEQADV 4LNB SER A 146 UNP Q4WP27 ASN 146 ENGINEERED MUTATION SEQRES 1 A 367 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER GLN ASP SEQRES 2 A 367 PRO MET GLU GLY LYS TYR SER SER ASP PRO GLU TRP ALA SEQRES 3 A 367 SER ILE LYS PRO ILE GLU LEU ASN ASP GLY SER ASP PHE SEQRES 4 A 367 GLY ALA MET PRO LEU ALA THR ILE SER TYR SER PRO GLU SEQRES 5 A 367 TYR LEU GLU ALA THR SER TYR LEU ARG ALA VAL MET ALA SEQRES 6 A 367 ALA ASN GLU MET SER GLU ARG ALA LEU ARG LEU THR GLY SEQRES 7 A 367 ASP ILE ILE SER MET ASN PRO ALA HIS TYR THR VAL TRP SEQRES 8 A 367 ILE TYR ARG ALA LYS ILE LEU PHE ALA LEU GLY LYS ASP SEQRES 9 A 367 LEU ASN GLU GLU ILE GLU TRP LEU ASN LYS VAL ALA LEU SEQRES 10 A 367 LYS HIS LEU LYS ASN TYR GLN ILE TRP HIS HIS ARG GLN SEQRES 11 A 367 VAL LEU MET SER SER ARG ALA HIS PHE PRO THR LEU PRO SEQRES 12 A 367 PRO ARG GLU GLN ASP PHE LEU MET GLU MET PHE ALA GLN SEQRES 13 A 367 ASP ALA LYS SER TYR HIS VAL TRP THR TYR ARG HIS TRP SEQRES 14 A 367 LEU VAL ARG HIS PHE LYS LEU TRP ASP HIS PRO ARG GLU SEQRES 15 A 367 ILE GLN ASP VAL GLU ALA LEU LEU LYS ALA ASP VAL ARG SEQRES 16 A 367 ASN ASN SER ALA TRP ASN HIS ARG TYR MET LEU ARG PHE SEQRES 17 A 367 GLY PRO ARG ASP GLU ASN GLU PHE ASP ALA GLY LEU HIS SEQRES 18 A 367 ASN THR THR GLY PRO SER SER GLU LYS GLY ARG LEU PRO SEQRES 19 A 367 VAL VAL ASP GLU ASP LEU VAL ASP SER GLU LEU GLN TYR SEQRES 20 A 367 SER GLN SER ARG ILE LEU GLU ALA PRO GLU ASN ARG SER SEQRES 21 A 367 PRO TRP SER TYR ALA ARG GLY VAL LEU GLN ALA ALA GLY SEQRES 22 A 367 ARG PRO LEU SER GLU TRP LYS ASP PHE ALA ARG SER PHE SEQRES 23 A 367 VAL VAL GLU LYS GLN GLU ASN GLY GLN VAL VAL ASP VAL SEQRES 24 A 367 ALA VAL LYS SER SER HIS ALA ILE GLU TRP LEU ALA ASP SEQRES 25 A 367 VAL TYR ALA GLU GLU ASP GLY SER GLU GLY SER ALA ALA SEQRES 26 A 367 GLU ALA VAL LYS MET LEU THR LEU LEU LYS GLU LYS TYR SEQRES 27 A 367 ASP PRO ILE ARG ARG ASN TYR TRP GLU TYR ARG ILE ARG SEQRES 28 A 367 GLN ILE THR ALA SER ALA ALA HIS ALA THR GLU ILE SER SEQRES 29 A 367 ALA SER ALA SEQRES 1 B 519 MET PRO VAL ILE ALA ALA THR GLY LYS HIS ARG ARG LYS SEQRES 2 B 519 VAL LEU PHE SER SER THR SER GLN GLY LEU SER VAL THR SEQRES 3 B 519 ALA GLY LYS PRO LYS GLY ARG LYS PHE SER ALA ASN LEU SEQRES 4 B 519 GLN VAL ASN SER ARG SER PRO ALA VAL THR SER SER HIS SEQRES 5 B 519 ASN HIS SER SER SER SER GLN SER GLY LYS MET GLY GLU SEQRES 6 B 519 SER GLN VAL HIS PRO GLY ILE PRO ALA LEU PHE ARG GLU SEQRES 7 B 519 PRO PRO LEU ILE HIS ASP LEU LEU SER THR GLU THR THR SEQRES 8 B 519 GLU LEU GLN SER GLU THR VAL ASN LYS CYS LEU PRO LEU SEQRES 9 B 519 LEU LYS GLY ILE HIS ASN SER GLN LYS GLY PRO PHE ASN SEQRES 10 B 519 LYS TYR GLY ILE PRO ALA LEU GLN ARG LYS ASP HIS LEU SEQRES 11 B 519 GLU TYR LEU TYR ASP SER LEU GLU ASP TYR PRO ALA SER SEQRES 12 B 519 PHE VAL ALA LEU ASP ALA SER ARG PRO TRP MET VAL TYR SEQRES 13 B 519 TRP ALA LEU ALA GLY LEU CYS LEU LEU GLY GLU ASP VAL SEQRES 14 B 519 THR ARG PHE ARG GLU ARG VAL ILE SER THR PHE THR ALA SEQRES 15 B 519 ALA GLN ASN SER THR GLY GLY ILE GLY GLY GLY HIS GLY SEQRES 16 B 519 GLN MET SER HIS VAL ALA SER SER TYR ALA ALA VAL LEU SEQRES 17 B 519 SER ILE ALA MET VAL GLY GLY GLU GLU ALA PHE LYS LEU SEQRES 18 B 519 ILE ASP ARG LYS ALA MET TRP LYS TRP LEU GLY LYS LEU SEQRES 19 B 519 LYS GLN PRO ASP GLY GLY PHE THR VAL CYS GLU GLY GLY SEQRES 20 B 519 GLU GLU ASP VAL ARG GLY ALA TYR CYS ALA MET VAL VAL SEQRES 21 B 519 HIS ALA LEU LEU ASP LEU PRO LEU ALA LEU PRO PRO GLU SEQRES 22 B 519 ALA GLU ALA ARG GLN ASN GLY LEU GLU THR PHE THR ASP SEQRES 23 B 519 GLY LEU PRO GLU TYR LEU SER ARG CYS GLN THR TYR GLU SEQRES 24 B 519 GLY GLY ILE SER GLY SER PRO GLY SER GLU ALA HIS GLY SEQRES 25 B 519 ALA TYR ALA PHE CYS ALA LEU ALA CYS LEU CYS LEU LEU SEQRES 26 B 519 GLY ARG PRO GLU VAL VAL VAL PRO ARG TYR MET ASN ILE SEQRES 27 B 519 ALA THR LEU LEU PRO TRP LEU SER ALA ARG GLN TYR ALA SEQRES 28 B 519 PRO GLU GLY GLY PHE SER GLY ARG THR ASN LYS LEU VAL SEQRES 29 B 519 ASP GLY CYS TYR SER HIS TRP VAL GLY ASN CYS TRP PRO SEQRES 30 B 519 LEU VAL GLN ALA ALA LEU ASP GLY THR GLN PRO LEU ALA SEQRES 31 B 519 GLY PRO LYS ARG SER SER VAL GLY ASN LEU TYR SER ARG SEQRES 32 B 519 GLU GLY LEU THR ARG TYR ILE LEU SER CYS CYS GLN CYS SEQRES 33 B 519 LYS LEU GLY GLY LEU ARG ASP LYS PRO GLY LYS HIS PRO SEQRES 34 B 519 ASP SER TYR HIS THR CYS TYR ALA LEU THR GLY LEU SER SEQRES 35 B 519 THR VAL GLN TYR TYR HIS TYR CYS THR ASP SER SER VAL SEQRES 36 B 519 SER SER LYS ASP ASP PHE SER SER ALA PHE SER TRP LYS SEQRES 37 B 519 HIS ASP PRO ASN PHE ALA SER ASP GLY GLN GLY SER ASP SEQRES 38 B 519 ILE GLY VAL PHE THR GLU ASN ASP ARG LEU VAL PRO PHE SEQRES 39 B 519 HIS PRO ILE PHE VAL ILE PRO HIS LYS SER ALA GLU ASP SEQRES 40 B 519 ILE ARG VAL TRP PHE GLU ASN GLN SER PHE ASP LEU HET EDO A 401 4 HET EDO A 402 4 HET EDO A 403 4 HET FPP B 601 24 HET ZN B 602 1 HET ED5 B 603 43 HET EDO B 604 4 HET EDO B 605 4 HETNAM EDO 1,2-ETHANEDIOL HETNAM FPP FARNESYL DIPHOSPHATE HETNAM ZN ZINC ION HETNAM ED5 TERT-BUTYL 4-({(2-{(4-CYANOPHENYL)[(1-METHYL-1H- HETNAM 2 ED5 IMIDAZOL-5-YL)METHYL]AMINO}ETHYL)[(2-METHYLPHENYL) HETNAM 3 ED5 SULFONYL]AMINO}METHYL)PIPERIDINE-1-CARBOXYLATE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 EDO 5(C2 H6 O2) FORMUL 6 FPP C15 H28 O7 P2 FORMUL 7 ZN ZN 2+ FORMUL 8 ED5 C32 H42 N6 O4 S FORMUL 11 HOH *533(H2 O) HELIX 1 1 ASP A 8 ALA A 12 5 5 HELIX 2 2 SER A 36 ALA A 52 1 17 HELIX 3 3 SER A 56 ASN A 70 1 15 HELIX 4 4 HIS A 73 LEU A 87 1 15 HELIX 5 5 ASP A 90 HIS A 105 1 16 HELIX 6 6 TYR A 109 SER A 120 1 12 HELIX 7 7 ARG A 131 ALA A 141 1 11 HELIX 8 8 SER A 146 LYS A 161 1 16 HELIX 9 9 HIS A 165 ASP A 179 1 15 HELIX 10 10 ASN A 182 GLY A 195 1 14 HELIX 11 11 PRO A 212 LYS A 216 5 5 HELIX 12 12 ASP A 223 ALA A 241 1 19 HELIX 13 13 ASN A 244 GLY A 259 1 16 HELIX 14 14 PRO A 261 GLU A 264 5 4 HELIX 15 15 TRP A 265 SER A 271 1 7 HELIX 16 16 SER A 289 GLU A 302 1 14 HELIX 17 17 GLY A 308 LYS A 323 1 16 HELIX 18 18 ASP A 325 ILE A 327 5 3 HELIX 19 19 ARG A 328 ILE A 349 1 22 HELIX 20 20 PRO B 95 ARG B 99 5 5 HELIX 21 21 THR B 110 LYS B 128 1 19 HELIX 22 22 GLN B 147 SER B 158 1 12 HELIX 23 23 PRO B 163 ALA B 171 5 9 HELIX 24 24 SER B 172 LEU B 187 1 16 HELIX 25 25 VAL B 191 ARG B 193 5 3 HELIX 26 26 PHE B 194 ALA B 204 1 11 HELIX 27 27 HIS B 221 GLY B 236 1 16 HELIX 28 28 GLY B 237 LYS B 242 1 6 HELIX 29 29 ASP B 245 LYS B 257 1 13 HELIX 30 30 ASP B 272 LEU B 286 1 15 HELIX 31 31 ALA B 296 GLY B 302 5 7 HELIX 32 32 GLY B 309 ARG B 316 1 8 HELIX 33 33 HIS B 333 CYS B 345 1 13 HELIX 34 34 ARG B 349 MET B 358 1 10 HELIX 35 35 ASN B 359 ALA B 369 1 11 HELIX 36 36 CYS B 389 VAL B 394 1 6 HELIX 37 37 ASN B 396 GLY B 407 1 12 HELIX 38 38 SER B 424 CYS B 436 1 13 HELIX 39 39 ASP B 452 GLN B 467 1 16 HELIX 40 40 SER B 484 PHE B 487 5 4 HELIX 41 41 THR B 508 ARG B 512 5 5 HELIX 42 42 PRO B 523 ASN B 536 1 14 SHEET 1 A 2 VAL A 273 VAL A 274 0 SHEET 2 A 2 ALA A 286 VAL A 287 -1 O ALA A 286 N VAL A 274 SHEET 1 B 2 TYR B 468 CYS B 472 0 SHEET 2 B 2 TRP B 489 PRO B 493 -1 O ASP B 492 N TYR B 469 LINK OD2 ASP B 387 ZN ZN B 602 1555 1555 2.04 LINK OD1 ASP B 387 ZN ZN B 602 1555 1555 2.51 LINK SG CYS B 389 ZN ZN B 602 1555 1555 2.43 LINK NE2 HIS B 455 ZN ZN B 602 1555 1555 2.04 LINK ZN ZN B 602 NBC ED5 B 603 1555 1555 2.06 CISPEP 1 GLY B 136 PRO B 137 0 -0.01 CISPEP 2 ALA B 373 PRO B 374 0 9.03 SITE 1 AC1 7 ASP A 143 SER A 146 TYR A 147 HIS A 148 SITE 2 AC1 7 HOH A 717 ARG B 381 FPP B 601 SITE 1 AC2 7 TYR A 35 THR A 43 ARG A 47 EDO A 403 SITE 2 AC2 7 HOH A 567 ASP B 170 HOH B 782 SITE 1 AC3 8 THR A 43 LEU A 46 ARG A 47 MET A 50 SITE 2 AC3 8 HIS A 73 EDO A 402 HIS B 216 GLY B 217 SITE 1 AC4 18 TYR A 147 EDO A 401 ARG B 274 HIS B 333 SITE 2 AC4 18 ALA B 335 CYS B 339 ARG B 381 LYS B 384 SITE 3 AC4 18 TYR B 390 TRP B 393 TYR B 454 ED5 B 603 SITE 4 AC4 18 HOH B 704 HOH B 714 HOH B 718 HOH B 737 SITE 5 AC4 18 HOH B 830 HOH B 971 SITE 1 AC5 4 ASP B 387 CYS B 389 HIS B 455 ED5 B 603 SITE 1 AC6 12 ALA B 168 SER B 172 ARG B 274 ASP B 387 SITE 2 AC6 12 CYS B 389 TYR B 390 ASP B 452 TYR B 454 SITE 3 AC6 12 HIS B 455 FPP B 601 ZN B 602 HOH B 820 SITE 1 AC7 7 TYR B 154 MET B 176 TRP B 179 ASP B 452 SITE 2 AC7 7 SER B 453 TYR B 454 HOH B 813 SITE 1 AC8 4 ALA B 171 TRP B 175 SER B 224 HOH B1004 CRYST1 63.321 91.253 83.052 90.00 110.93 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015793 0.000000 0.006040 0.00000 SCALE2 0.000000 0.010959 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012891 0.00000