HEADER ISOMERASE 11-JUL-13 4LNC TITLE NEUTRON STRUCTURE OF THE CYCLIC GLUCOSE BOUND XYLOSE ISOMERASE E186Q TITLE 2 MUTANT COMPND MOL_ID: 1; COMPND 2 MOLECULE: XYLOSE ISOMERASE; COMPND 3 CHAIN: A; COMPND 4 EC: 5.3.1.5; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES RUBIGINOSUS; SOURCE 3 ORGANISM_TAXID: 1929; SOURCE 4 GENE: XYLA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ISOMERASE, MUTANT ENZYME, METALLOENZYME, TWO METAL BINDING SITES EXPDTA NEUTRON DIFFRACTION AUTHOR P.MUNSHI,F.MEILLEUR,D.MYLES REVDAT 6 28-FEB-24 4LNC 1 HETSYN REVDAT 5 29-JUL-20 4LNC 1 COMPND REMARK SEQADV HETNAM REVDAT 5 2 1 LINK SITE REVDAT 4 13-JUN-18 4LNC 1 EXPDTA REMARK REVDAT 3 25-APR-18 4LNC 1 REMARK REVDAT 2 24-SEP-14 4LNC 1 JRNL REVDAT 1 12-FEB-14 4LNC 0 JRNL AUTH P.MUNSHI,E.H.SNELL,M.J.VAN DER WOERD,R.A.JUDGE,D.A.MYLES, JRNL AUTH 2 Z.REN,F.MEILLEUR JRNL TITL NEUTRON STRUCTURE OF THE CYCLIC GLUCOSE-BOUND XYLOSE JRNL TITL 2 ISOMERASE E186Q MUTANT. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 70 414 2014 JRNL REFN ISSN 0907-4449 JRNL PMID 24531475 JRNL DOI 10.1107/S1399004713029684 REMARK 2 REMARK 2 RESOLUTION. 2.19 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8_1069) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 NEUTRON DATA. REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.19 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.10 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 93.1 REMARK 3 NUMBER OF REFLECTIONS : 23628 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.288 REMARK 3 R VALUE (WORKING SET) : 0.284 REMARK 3 FREE R VALUE : 0.322 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.980 REMARK 3 FREE R VALUE TEST SET COUNT : 2357 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.1126 - 5.6137 0.98 1422 159 0.1688 0.2193 REMARK 3 2 5.6137 - 4.4575 0.99 1359 144 0.1763 0.2334 REMARK 3 3 4.4575 - 3.8945 0.99 1357 148 0.1765 0.1901 REMARK 3 4 3.8945 - 3.5387 0.98 1336 148 0.2109 0.2743 REMARK 3 5 3.5387 - 3.2851 0.99 1319 149 0.2378 0.2946 REMARK 3 6 3.2851 - 3.0915 0.99 1340 142 0.2649 0.3004 REMARK 3 7 3.0915 - 2.9367 0.99 1302 154 0.2781 0.3262 REMARK 3 8 2.9367 - 2.8089 0.98 1343 144 0.3023 0.3256 REMARK 3 9 2.8089 - 2.7008 0.98 1292 160 0.3054 0.3416 REMARK 3 10 2.7008 - 2.6076 0.98 1318 132 0.3140 0.3289 REMARK 3 11 2.6076 - 2.5261 0.98 1289 150 0.3290 0.3799 REMARK 3 12 2.5261 - 2.4539 0.97 1289 147 0.3417 0.3806 REMARK 3 13 2.4539 - 2.3893 0.96 1274 131 0.3397 0.3770 REMARK 3 14 2.3893 - 2.3310 0.93 1256 134 0.3521 0.3857 REMARK 3 15 2.3310 - 2.2780 0.90 1189 138 0.3677 0.3811 REMARK 3 16 2.2780 - 2.2296 0.81 1054 124 0.3961 0.4113 REMARK 3 17 2.2296 - 2.1900 0.40 532 53 0.3820 0.4403 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.022 7253 REMARK 3 ANGLE : 2.136 12339 REMARK 3 CHIRALITY : 0.156 440 REMARK 3 PLANARITY : 0.013 1387 REMARK 3 DIHEDRAL : 19.247 1871 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 3 X-RAY DATA. REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.84 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 14.54 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 83.2 REMARK 3 NUMBER OF REFLECTIONS : 35159 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.156 REMARK 3 R VALUE (WORKING SET) : 0.150 REMARK 3 FREE R VALUE : 0.209 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.010 REMARK 3 FREE R VALUE TEST SET COUNT : 3518 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 14.5454 - 5.2881 0.65 1059 113 0.1656 0.1884 REMARK 3 2 5.2881 - 4.2313 0.77 1207 133 0.1076 0.1615 REMARK 3 3 4.2313 - 3.7066 0.79 1227 131 0.1139 0.1306 REMARK 3 4 3.7066 - 3.3723 0.81 1245 144 0.1355 0.1856 REMARK 3 5 3.3723 - 3.1332 0.82 1251 143 0.1539 0.2266 REMARK 3 6 3.1332 - 2.9501 0.83 1255 136 0.1724 0.2395 REMARK 3 7 2.9501 - 2.8034 0.84 1301 143 0.1722 0.2134 REMARK 3 8 2.8034 - 2.6822 0.84 1250 144 0.1644 0.2348 REMARK 3 9 2.6822 - 2.5795 0.85 1312 148 0.1722 0.2528 REMARK 3 10 2.5795 - 2.4909 0.86 1292 149 0.1751 0.2279 REMARK 3 11 2.4909 - 2.4134 0.85 1306 146 0.1605 0.2478 REMARK 3 12 2.4134 - 2.3447 0.86 1332 124 0.1488 0.2098 REMARK 3 13 2.3447 - 2.2832 0.87 1288 150 0.1580 0.2136 REMARK 3 14 2.2832 - 2.2277 0.88 1322 151 0.1560 0.2066 REMARK 3 15 2.2277 - 2.1773 0.87 1319 149 0.1564 0.2098 REMARK 3 16 2.1773 - 2.1311 0.88 1315 155 0.1479 0.1926 REMARK 3 17 2.1311 - 2.0886 0.89 1357 134 0.1420 0.2238 REMARK 3 18 2.0886 - 2.0493 0.89 1331 156 0.1442 0.2313 REMARK 3 19 2.0493 - 2.0128 0.89 1360 144 0.1493 0.2181 REMARK 3 20 2.0128 - 1.9787 0.90 1345 143 0.1595 0.2392 REMARK 3 21 1.9787 - 1.9469 0.90 1335 145 0.1619 0.2521 REMARK 3 22 1.9469 - 1.9170 0.91 1375 164 0.1594 0.2399 REMARK 3 23 1.9170 - 1.8889 0.90 1362 145 0.1737 0.2414 REMARK 3 24 1.8889 - 1.8623 0.87 1291 150 0.1825 0.2649 REMARK 3 25 1.8623 - 1.8372 0.41 604 78 0.1735 0.2532 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.68 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : NULL NULL REMARK 3 ANGLE : NULL NULL REMARK 3 CHIRALITY : NULL NULL REMARK 3 PLANARITY : NULL NULL REMARK 3 DIHEDRAL : NULL NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4LNC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-AUG-13. REMARK 100 THE DEPOSITION ID IS D_1000080845. REMARK 230 REMARK 230 EXPERIMENTAL DETAILS REMARK 230 EXPERIMENT TYPE : NEUTRON DIFFRACTION REMARK 230 DATE OF DATA COLLECTION : 04-JUN-00 REMARK 230 TEMPERATURE (KELVIN) : 293.0 REMARK 230 PH : 7.70 REMARK 230 NUMBER OF CRYSTALS USED : NULL REMARK 230 REMARK 230 NEUTRON SOURCE : NUCLEAR REACTOR REMARK 230 BEAMLINE : H142 REMARK 230 WAVELENGTH OR RANGE (A) : 3.6-5.0 REMARK 230 MONOCHROMATOR : NI/TI MULTILAYER REMARK 230 OPTICS : NI/TI MULTILAYER REMARK 230 REMARK 230 DETECTOR TYPE : IMAGE PLATE REMARK 230 DETECTOR MANUFACTURER : EMBL PROTOTYPE LADI-I REMARK 230 INTENSITY-INTEGRATION SOFTWARE : LAUEGEN REMARK 230 DATA SCALING SOFTWARE : SCALA REMARK 230 REMARK 230 NUMBER OF UNIQUE REFLECTIONS : 23649 REMARK 230 RESOLUTION RANGE HIGH (A) : 2.170 REMARK 230 RESOLUTION RANGE LOW (A) : 41.100 REMARK 230 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 230 REMARK 230 OVERALL. REMARK 230 COMPLETENESS FOR RANGE (%) : 93.0 REMARK 230 DATA REDUNDANCY : 6.600 REMARK 230 R MERGE (I) : 0.27600 REMARK 230 R SYM (I) : 0.27600 REMARK 230 FOR THE DATA SET : 11.7000 REMARK 230 REMARK 230 IN THE HIGHEST RESOLUTION SHELL. REMARK 230 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.17 REMARK 230 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.29 REMARK 230 COMPLETENESS FOR SHELL (%) : 66.7 REMARK 230 DATA REDUNDANCY IN SHELL : 2.50 REMARK 230 R MERGE FOR SHELL (I) : 0.21400 REMARK 230 R SYM FOR SHELL (I) : 0.21400 REMARK 230 FOR SHELL : 3.500 REMARK 230 REMARK 230 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 230 SOFTWARE USED : PHENIX REMARK 230 STARTING MODEL: NULL REMARK 230 REMARK 230 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.84 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: LARGE CRYSTALS WERE GROWN IN 1.5 ML REMARK 280 EPPENDORF TUBES WITH 15% AMMONIUM SULFATE, 72 MG/ML D-XYLOSE REMARK 280 ISOMERASE AT PH 7.7, BATCH METHOD, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 46.98500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 49.76000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 51.46000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 46.98500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 49.76000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 51.46000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 46.98500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 49.76000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 51.46000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 46.98500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 49.76000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 51.46000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 31430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 45580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -237.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 93.97000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 99.52000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 93.97000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 102.92000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 99.52000 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 102.92000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 O DOD A 722 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 GLY A 388 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 110 O DOD A 712 2.13 REMARK 500 OD2 ASP A 9 O DOD A 648 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 VAL A 18 CB VAL A 18 CG2 0.167 REMARK 500 VAL A 51 CB VAL A 51 CG1 -0.174 REMARK 500 GLU A 132 CG GLU A 132 CD 0.126 REMARK 500 VAL A 169 CA VAL A 169 CB 0.147 REMARK 500 GLU A 207 CD GLU A 207 OE1 0.082 REMARK 500 GLU A 217 CD GLU A 217 OE1 -0.078 REMARK 500 GLU A 221 CG GLU A 221 CD -0.090 REMARK 500 TYR A 254 CE1 TYR A 254 CZ -0.087 REMARK 500 TYR A 280 CE1 TYR A 280 CZ -0.101 REMARK 500 ARG A 292 CB ARG A 292 CG -0.185 REMARK 500 TYR A 310 CD1 TYR A 310 CE1 -0.091 REMARK 500 GLU A 328 CG GLU A 328 CD 0.142 REMARK 500 GLU A 337 CB GLU A 337 CG -0.142 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 10 NE - CZ - NH1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG A 23 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ASP A 24 CB - CG - OD2 ANGL. DEV. = -6.4 DEGREES REMARK 500 ARG A 41 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 LEU A 46 CB - CG - CD2 ANGL. DEV. = -10.9 DEGREES REMARK 500 ARG A 76 NH1 - CZ - NH2 ANGL. DEV. = 6.9 DEGREES REMARK 500 ARG A 76 NE - CZ - NH2 ANGL. DEV. = -7.3 DEGREES REMARK 500 ASP A 80 CB - CG - OD1 ANGL. DEV. = 5.4 DEGREES REMARK 500 ASP A 81 CB - CG - OD1 ANGL. DEV. = 6.4 DEGREES REMARK 500 ARG A 152 NE - CZ - NH2 ANGL. DEV. = -5.0 DEGREES REMARK 500 ASP A 156 CB - CG - OD1 ANGL. DEV. = 7.3 DEGREES REMARK 500 ARG A 177 NE - CZ - NH1 ANGL. DEV. = -4.3 DEGREES REMARK 500 ARG A 188 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 VAL A 196 CG1 - CB - CG2 ANGL. DEV. = -10.1 DEGREES REMARK 500 MET A 223 CG - SD - CE ANGL. DEV. = 9.9 DEGREES REMARK 500 ARG A 259 NE - CZ - NH1 ANGL. DEV. = 3.2 DEGREES REMARK 500 ARG A 266 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 ARG A 316 NE - CZ - NH1 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG A 331 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG A 334 CD - NE - CZ ANGL. DEV. = 9.4 DEGREES REMARK 500 ARG A 334 NE - CZ - NH1 ANGL. DEV. = -8.0 DEGREES REMARK 500 ARG A 334 NE - CZ - NH2 ANGL. DEV. = 10.8 DEGREES REMARK 500 ARG A 340 CG - CD - NE ANGL. DEV. = 15.1 DEGREES REMARK 500 ARG A 340 NE - CZ - NH1 ANGL. DEV. = 6.1 DEGREES REMARK 500 ARG A 340 NE - CZ - NH2 ANGL. DEV. = -4.5 DEGREES REMARK 500 LEU A 350 CB - CG - CD2 ANGL. DEV. = -11.5 DEGREES REMARK 500 ASP A 361 CB - CG - OD2 ANGL. DEV. = -5.7 DEGREES REMARK 500 ARG A 368 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 17 -71.02 -84.72 REMARK 500 PHE A 94 -29.04 -141.07 REMARK 500 ASP A 175 72.26 -108.09 REMARK 500 GLN A 186 108.56 83.04 REMARK 500 ASN A 247 -169.70 -175.46 REMARK 500 LYS A 253 -171.65 -175.00 REMARK 500 ALA A 343 65.79 -157.32 REMARK 500 PHE A 357 -74.79 -159.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 403 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 181 OE2 REMARK 620 2 GLU A 217 OE1 95.5 REMARK 620 3 ASP A 245 OD2 91.9 108.2 REMARK 620 4 ASP A 287 OD2 157.4 81.0 110.4 REMARK 620 5 GLC A 401 O4 87.5 161.6 89.7 89.2 REMARK 620 6 GLC A 401 O3 86.2 95.0 156.8 71.9 67.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 404 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 181 OE2 REMARK 620 2 GLU A 217 OE1 100.9 REMARK 620 3 ASP A 245 OD2 84.4 99.2 REMARK 620 4 ASP A 287 OD2 173.2 84.2 99.3 REMARK 620 5 GLC A 401 O4 87.2 171.7 79.7 87.9 REMARK 620 6 GLC A 401 O3 95.4 108.7 151.6 78.6 72.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 402 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 217 OE2 REMARK 620 2 HIS A 220 NE2 78.0 REMARK 620 3 ASP A 255 OD2 166.7 93.1 REMARK 620 4 ASP A 255 OD1 113.7 96.5 57.0 REMARK 620 5 ASP A 257 OD1 90.6 167.5 97.2 83.4 REMARK 620 6 DOD A 755 O 87.4 110.7 105.2 148.9 73.3 REMARK 620 N 1 2 3 4 5 DBREF 4LNC A 1 388 UNP P24300 XYLA_STRRU 1 388 SEQADV 4LNC ALA A 4 UNP P24300 GLN 4 ENGINEERED MUTATION SEQADV 4LNC VAL A 8 UNP P24300 GLU 8 ENGINEERED MUTATION SEQADV 4LNC GLN A 186 UNP P24300 GLU 186 ENGINEERED MUTATION SEQRES 1 A 388 MET ASN TYR ALA PRO THR PRO VAL ASP ARG PHE THR PHE SEQRES 2 A 388 GLY LEU TRP THR VAL GLY TRP GLN GLY ARG ASP PRO PHE SEQRES 3 A 388 GLY ASP ALA THR ARG ARG ALA LEU ASP PRO VAL GLU SER SEQRES 4 A 388 VAL ARG ARG LEU ALA GLU LEU GLY ALA HIS GLY VAL THR SEQRES 5 A 388 PHE HIS ASP ASP ASP LEU ILE PRO PHE GLY SER SER ASP SEQRES 6 A 388 SER GLU ARG GLU GLU HIS VAL LYS ARG PHE ARG GLN ALA SEQRES 7 A 388 LEU ASP ASP THR GLY MET LYS VAL PRO MET ALA THR THR SEQRES 8 A 388 ASN LEU PHE THR HIS PRO VAL PHE LYS ASP GLY GLY PHE SEQRES 9 A 388 THR ALA ASN ASP ARG ASP VAL ARG ARG TYR ALA LEU ARG SEQRES 10 A 388 LYS THR ILE ARG ASN ILE ASP LEU ALA VAL GLU LEU GLY SEQRES 11 A 388 ALA GLU THR TYR VAL ALA TRP GLY GLY ARG GLU GLY ALA SEQRES 12 A 388 GLU SER GLY GLY ALA LYS ASP VAL ARG ASP ALA LEU ASP SEQRES 13 A 388 ARG MET LYS GLU ALA PHE ASP LEU LEU GLY GLU TYR VAL SEQRES 14 A 388 THR SER GLN GLY TYR ASP ILE ARG PHE ALA ILE GLU PRO SEQRES 15 A 388 LYS PRO ASN GLN PRO ARG GLY ASP ILE LEU LEU PRO THR SEQRES 16 A 388 VAL GLY HIS ALA LEU ALA PHE ILE GLU ARG LEU GLU ARG SEQRES 17 A 388 PRO GLU LEU TYR GLY VAL ASN PRO GLU VAL GLY HIS GLU SEQRES 18 A 388 GLN MET ALA GLY LEU ASN PHE PRO HIS GLY ILE ALA GLN SEQRES 19 A 388 ALA LEU TRP ALA GLY LYS LEU PHE HIS ILE ASP LEU ASN SEQRES 20 A 388 GLY GLN ASN GLY ILE LYS TYR ASP GLN ASP LEU ARG PHE SEQRES 21 A 388 GLY ALA GLY ASP LEU ARG ALA ALA PHE TRP LEU VAL ASP SEQRES 22 A 388 LEU LEU GLU SER ALA GLY TYR SER GLY PRO ARG HIS PHE SEQRES 23 A 388 ASP PHE LYS PRO PRO ARG THR GLU ASP PHE ASP GLY VAL SEQRES 24 A 388 TRP ALA SER ALA ALA GLY CYS MET ARG ASN TYR LEU ILE SEQRES 25 A 388 LEU LYS GLU ARG ALA ALA ALA PHE ARG ALA ASP PRO GLU SEQRES 26 A 388 VAL GLN GLU ALA LEU ARG ALA SER ARG LEU ASP GLU LEU SEQRES 27 A 388 ALA ARG PRO THR ALA ALA ASP GLY LEU GLN ALA LEU LEU SEQRES 28 A 388 ASP ASP ARG SER ALA PHE GLU GLU PHE ASP VAL ASP ALA SEQRES 29 A 388 ALA ALA ALA ARG GLY MET ALA PHE GLU ARG LEU ASP GLN SEQRES 30 A 388 LEU ALA MET ASP HIS LEU LEU GLY ALA ARG GLY HET GLC A 401 27 HET MN A 402 1 HET MN A 403 1 HET MG A 404 1 HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM MN MANGANESE (II) ION HETNAM MG MAGNESIUM ION HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE FORMUL 2 GLC C6 H12 O6 FORMUL 3 MN 2(MN 2+) FORMUL 5 MG MG 2+ FORMUL 6 DOD *289(D2 O) HELIX 1 1 THR A 6 ASP A 9 5 4 HELIX 2 2 LEU A 15 GLY A 19 1 5 HELIX 3 3 ASP A 35 GLY A 47 1 13 HELIX 4 4 ASP A 55 ILE A 59 1 5 HELIX 5 5 SER A 64 GLY A 83 1 20 HELIX 6 6 HIS A 96 LYS A 100 5 5 HELIX 7 7 ASP A 108 LEU A 129 1 22 HELIX 8 8 SER A 145 LYS A 149 5 5 HELIX 9 9 ASP A 150 GLY A 173 1 24 HELIX 10 10 THR A 195 GLU A 204 1 10 HELIX 11 11 ARG A 208 GLU A 210 5 3 HELIX 12 12 GLU A 217 MET A 223 1 7 HELIX 13 13 ASN A 227 ALA A 238 1 12 HELIX 14 14 ASP A 264 ALA A 278 1 15 HELIX 15 15 ASP A 295 ASP A 323 1 29 HELIX 16 16 ASP A 323 SER A 333 1 11 HELIX 17 17 ARG A 334 ALA A 339 1 6 HELIX 18 18 GLY A 346 ASP A 353 1 8 HELIX 19 19 ARG A 354 PHE A 357 5 4 HELIX 20 20 ASP A 361 ALA A 367 1 7 HELIX 21 21 ALA A 371 GLY A 385 1 15 SHEET 1 A 8 TYR A 212 VAL A 214 0 SHEET 2 A 8 ARG A 177 ILE A 180 1 N ILE A 180 O GLY A 213 SHEET 3 A 8 THR A 133 ALA A 136 1 N ALA A 136 O ALA A 179 SHEET 4 A 8 MET A 88 THR A 90 1 N ALA A 89 O VAL A 135 SHEET 5 A 8 GLY A 50 HIS A 54 1 N PHE A 53 O THR A 90 SHEET 6 A 8 PHE A 11 GLY A 14 1 N PHE A 13 O THR A 52 SHEET 7 A 8 ARG A 284 PHE A 286 1 O PHE A 286 N THR A 12 SHEET 8 A 8 ASP A 245 LEU A 246 1 N LEU A 246 O HIS A 285 SHEET 1 B 2 GLY A 142 ALA A 143 0 SHEET 2 B 2 ASP A 190 ILE A 191 -1 O ASP A 190 N ALA A 143 LINK OE2 GLU A 181 MN MN A 403 1555 1555 2.18 LINK OE2 GLU A 181 MG MG A 404 1555 1555 2.12 LINK OE2 GLU A 217 MN MN A 402 1555 1555 2.21 LINK OE1 GLU A 217 MN MN A 403 1555 1555 1.95 LINK OE1 GLU A 217 MG MG A 404 1555 1555 1.84 LINK NE2 HIS A 220 MN MN A 402 1555 1555 2.56 LINK OD2 ASP A 245 MN MN A 403 1555 1555 2.21 LINK OD2 ASP A 245 MG MG A 404 1555 1555 2.55 LINK OD2 ASP A 255 MN MN A 402 1555 1555 2.19 LINK OD1 ASP A 255 MN MN A 402 1555 1555 2.40 LINK OD1 ASP A 257 MN MN A 402 1555 1555 2.31 LINK OD2 ASP A 287 MN MN A 403 1555 1555 2.11 LINK OD2 ASP A 287 MG MG A 404 1555 1555 2.09 LINK O4 GLC A 401 MN MN A 403 1555 1555 2.06 LINK O3 GLC A 401 MN MN A 403 1555 1555 2.57 LINK O4 GLC A 401 MG MG A 404 1555 1555 2.13 LINK O3 GLC A 401 MG MG A 404 1555 1555 2.28 LINK MN MN A 402 O DOD A 755 1555 1555 2.23 CISPEP 1 GLN A 186 PRO A 187 0 19.07 CRYST1 93.970 99.520 102.920 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010642 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010048 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009716 0.00000