HEADER APOPTOSIS 12-JUL-13 4LOF TITLE HUMAN P53 CORE DOMAIN MUTANT V157F/N235K/N239Y COMPND MOL_ID: 1; COMPND 2 MOLECULE: CELLULAR TUMOR ANTIGEN P53; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: P53 CORE DOMAIN (UNP RESIDUES 94-312); COMPND 5 SYNONYM: ANTIGEN NY-CO-13, PHOSPHOPROTEIN P53, TUMOR SUPPRESSOR P53; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: P53, TP53; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PSE420 KEYWDS BETA SANDWICH, TUMOR SUPPRESSOR, DNA BINDING, NUCLEAR, APOPTOSIS EXPDTA X-RAY DIFFRACTION AUTHOR B.D.WALLENTINE,Y.WANG,H.LUECKE REVDAT 5 20-SEP-23 4LOF 1 REMARK SEQADV LINK REVDAT 4 17-JUL-19 4LOF 1 REMARK REVDAT 3 15-JAN-14 4LOF 1 JRNL REVDAT 2 02-OCT-13 4LOF 1 JRNL REVDAT 1 31-JUL-13 4LOF 0 SPRSDE 31-JUL-13 4LOF 2QVQ JRNL AUTH B.D.WALLENTINE,Y.WANG,V.TRETYACHENKO-LADOKHINA,M.TAN, JRNL AUTH 2 D.F.SENEAR,H.LUECKE JRNL TITL STRUCTURES OF ONCOGENIC, SUPPRESSOR AND RESCUED P53 JRNL TITL 2 CORE-DOMAIN VARIANTS: MECHANISMS OF MUTANT P53 RESCUE. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 69 2146 2013 JRNL REFN ISSN 0907-4449 JRNL PMID 24100332 JRNL DOI 10.1107/S0907444913020830 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.15 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.390 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 12818 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.256 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1026 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.1659 - 3.8253 0.94 1740 151 0.1532 0.1802 REMARK 3 2 3.8253 - 3.0364 0.95 1653 145 0.1642 0.2920 REMARK 3 3 3.0364 - 2.6526 0.98 1690 146 0.2130 0.2814 REMARK 3 4 2.6526 - 2.4101 0.98 1686 147 0.2089 0.2666 REMARK 3 5 2.4101 - 2.2374 0.98 1663 144 0.2163 0.2490 REMARK 3 6 2.2374 - 2.1055 0.99 1680 147 0.2430 0.3248 REMARK 3 7 2.1055 - 2.0000 0.99 1680 146 0.2855 0.3672 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.770 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 1601 REMARK 3 ANGLE : 1.123 2167 REMARK 3 CHIRALITY : 0.077 233 REMARK 3 PLANARITY : 0.005 285 REMARK 3 DIHEDRAL : 12.721 611 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESID 94:155) REMARK 3 ORIGIN FOR THE GROUP (A): 19.6398 7.9307 10.4404 REMARK 3 T TENSOR REMARK 3 T11: 0.2002 T22: 0.1392 REMARK 3 T33: 0.1742 T12: -0.0126 REMARK 3 T13: 0.0023 T23: -0.0332 REMARK 3 L TENSOR REMARK 3 L11: 3.7200 L22: 1.8032 REMARK 3 L33: 0.6813 L12: -0.1185 REMARK 3 L13: 0.8164 L23: -0.4150 REMARK 3 S TENSOR REMARK 3 S11: -0.0543 S12: -0.1965 S13: 0.4557 REMARK 3 S21: 0.1030 S22: -0.0578 S23: -0.2061 REMARK 3 S31: -0.0802 S32: 0.0629 S33: 0.0938 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESID 156:203) REMARK 3 ORIGIN FOR THE GROUP (A): 15.2518 -6.7151 5.8404 REMARK 3 T TENSOR REMARK 3 T11: 0.1082 T22: 0.1588 REMARK 3 T33: 0.1835 T12: -0.0212 REMARK 3 T13: -0.0517 T23: -0.0418 REMARK 3 L TENSOR REMARK 3 L11: 3.4553 L22: 4.2408 REMARK 3 L33: 4.1526 L12: -0.2098 REMARK 3 L13: -0.2281 L23: -0.9511 REMARK 3 S TENSOR REMARK 3 S11: -0.0854 S12: 0.0631 S13: -0.2267 REMARK 3 S21: -0.1093 S22: 0.1071 S23: 0.0246 REMARK 3 S31: 0.1728 S32: -0.1035 S33: 0.0581 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESID 204:213) REMARK 3 ORIGIN FOR THE GROUP (A): 6.2809 -4.9753 0.7540 REMARK 3 T TENSOR REMARK 3 T11: 0.2816 T22: 0.2398 REMARK 3 T33: 0.2220 T12: 0.0125 REMARK 3 T13: -0.0191 T23: 0.0577 REMARK 3 L TENSOR REMARK 3 L11: 8.1439 L22: 4.9005 REMARK 3 L33: 5.4231 L12: 1.0794 REMARK 3 L13: 1.0176 L23: -3.3909 REMARK 3 S TENSOR REMARK 3 S11: 0.2887 S12: 0.5721 S13: -0.4292 REMARK 3 S21: -0.2064 S22: 0.5913 S23: 0.4367 REMARK 3 S31: -0.1202 S32: -1.2834 S33: -0.5765 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESID 214:229) REMARK 3 ORIGIN FOR THE GROUP (A): 8.8879 7.9844 17.6401 REMARK 3 T TENSOR REMARK 3 T11: 0.3717 T22: 0.3950 REMARK 3 T33: 0.3946 T12: 0.0124 REMARK 3 T13: -0.0460 T23: -0.1878 REMARK 3 L TENSOR REMARK 3 L11: 3.5199 L22: 4.7532 REMARK 3 L33: 2.2666 L12: 1.6186 REMARK 3 L13: 1.1147 L23: -1.4909 REMARK 3 S TENSOR REMARK 3 S11: -0.0092 S12: -1.2232 S13: 0.5747 REMARK 3 S21: 1.5542 S22: 0.1080 S23: -0.3448 REMARK 3 S31: 0.1551 S32: 0.1019 S33: -0.0781 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND (RESID 230:277) REMARK 3 ORIGIN FOR THE GROUP (A): 19.0202 0.2340 6.0595 REMARK 3 T TENSOR REMARK 3 T11: 0.1719 T22: 0.1474 REMARK 3 T33: 0.1452 T12: -0.0359 REMARK 3 T13: -0.0273 T23: -0.0220 REMARK 3 L TENSOR REMARK 3 L11: 4.3390 L22: 4.6746 REMARK 3 L33: 1.1936 L12: -3.2223 REMARK 3 L13: -1.5411 L23: 0.3072 REMARK 3 S TENSOR REMARK 3 S11: 0.0786 S12: 0.0923 S13: -0.1244 REMARK 3 S21: -0.0762 S22: -0.0993 S23: 0.0746 REMARK 3 S31: -0.0202 S32: 0.0854 S33: 0.0276 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN A AND (RESID 278:291) REMARK 3 ORIGIN FOR THE GROUP (A): 38.9795 4.6931 8.2865 REMARK 3 T TENSOR REMARK 3 T11: 0.2940 T22: 0.2677 REMARK 3 T33: 0.3458 T12: 0.0238 REMARK 3 T13: -0.0428 T23: 0.0183 REMARK 3 L TENSOR REMARK 3 L11: 3.5531 L22: 2.7801 REMARK 3 L33: 7.7845 L12: 1.7689 REMARK 3 L13: -4.6825 L23: -4.0804 REMARK 3 S TENSOR REMARK 3 S11: -0.0332 S12: -0.5855 S13: 0.2168 REMARK 3 S21: 0.0509 S22: -0.5709 S23: -1.0425 REMARK 3 S31: -0.0774 S32: 0.8392 S33: 0.4217 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4LOF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-JUL-13. REMARK 100 THE DEPOSITION ID IS D_1000080884. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-OCT-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 4.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12861 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 46.154 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.3 REMARK 200 DATA REDUNDANCY : 4.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.16900 REMARK 200 FOR THE DATA SET : 5.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 4.80 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: PDB ENTRY 2OCJ (CHAIN A) REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 34.47 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2 MICROLITERS PROTEIN SOLUTION (AROUND REMARK 280 5.0-7.0 MG/ML PROTEIN IN 20 MM TRIS PH 7.6, 150 MM NACL, 10 MM REMARK 280 DTT) WERE MIXED WITH 2 MICROLITERS RESERVOIR BUFFER WITH 200 MM REMARK 280 DI-SODIUM HYDROGEN PHOSPHATE DEHYDRATE (NA2HPO4), 20% (W/V) PEG REMARK 280 3350, VAPOR DIFFUSION REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 53.63400 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.56400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 53.63400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 25.56400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 608 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 292 REMARK 465 GLY A 293 REMARK 465 GLU A 294 REMARK 465 PRO A 295 REMARK 465 HIS A 296 REMARK 465 HIS A 297 REMARK 465 GLU A 298 REMARK 465 LEU A 299 REMARK 465 PRO A 300 REMARK 465 PRO A 301 REMARK 465 GLY A 302 REMARK 465 SER A 303 REMARK 465 THR A 304 REMARK 465 LYS A 305 REMARK 465 ARG A 306 REMARK 465 ALA A 307 REMARK 465 LEU A 308 REMARK 465 PRO A 309 REMARK 465 ASN A 310 REMARK 465 ASN A 311 REMARK 465 THR A 312 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 103 97.21 -162.80 REMARK 500 SER A 183 72.51 55.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 176 SG REMARK 620 2 HIS A 179 ND1 104.5 REMARK 620 3 CYS A 238 SG 113.2 103.9 REMARK 620 4 CYS A 242 SG 116.0 101.7 115.3 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4KVP RELATED DB: PDB REMARK 900 HUMAN P53 CORE DOMAIN MUTANT V157F REMARK 900 RELATED ID: 4LO9 RELATED DB: PDB REMARK 900 HUMAN P53 CORE DOMAIN MUTANT N235K REMARK 900 RELATED ID: 4LOE RELATED DB: PDB REMARK 900 HUMAN P53 CORE DOMAIN MUTANT N239Y DBREF 4LOF A 94 312 UNP P04637 P53_HUMAN 94 312 SEQADV 4LOF PHE A 157 UNP P04637 VAL 157 ENGINEERED MUTATION SEQADV 4LOF LYS A 235 UNP P04637 ASN 235 ENGINEERED MUTATION SEQADV 4LOF TYR A 239 UNP P04637 ASN 239 ENGINEERED MUTATION SEQRES 1 A 219 SER SER SER VAL PRO SER GLN LYS THR TYR GLN GLY SER SEQRES 2 A 219 TYR GLY PHE ARG LEU GLY PHE LEU HIS SER GLY THR ALA SEQRES 3 A 219 LYS SER VAL THR CYS THR TYR SER PRO ALA LEU ASN LYS SEQRES 4 A 219 MET PHE CYS GLN LEU ALA LYS THR CYS PRO VAL GLN LEU SEQRES 5 A 219 TRP VAL ASP SER THR PRO PRO PRO GLY THR ARG PHE ARG SEQRES 6 A 219 ALA MET ALA ILE TYR LYS GLN SER GLN HIS MET THR GLU SEQRES 7 A 219 VAL VAL ARG ARG CYS PRO HIS HIS GLU ARG CYS SER ASP SEQRES 8 A 219 SER ASP GLY LEU ALA PRO PRO GLN HIS LEU ILE ARG VAL SEQRES 9 A 219 GLU GLY ASN LEU ARG VAL GLU TYR LEU ASP ASP ARG ASN SEQRES 10 A 219 THR PHE ARG HIS SER VAL VAL VAL PRO TYR GLU PRO PRO SEQRES 11 A 219 GLU VAL GLY SER ASP CYS THR THR ILE HIS TYR LYS TYR SEQRES 12 A 219 MET CYS TYR SER SER CYS MET GLY GLY MET ASN ARG ARG SEQRES 13 A 219 PRO ILE LEU THR ILE ILE THR LEU GLU ASP SER SER GLY SEQRES 14 A 219 ASN LEU LEU GLY ARG ASN SER PHE GLU VAL ARG VAL CYS SEQRES 15 A 219 ALA CYS PRO GLY ARG ASP ARG ARG THR GLU GLU GLU ASN SEQRES 16 A 219 LEU ARG LYS LYS GLY GLU PRO HIS HIS GLU LEU PRO PRO SEQRES 17 A 219 GLY SER THR LYS ARG ALA LEU PRO ASN ASN THR HET ZN A 401 1 HETNAM ZN ZINC ION FORMUL 2 ZN ZN 2+ FORMUL 3 HOH *134(H2 O) HELIX 1 1 GLN A 165 MET A 169 5 5 HELIX 2 2 CYS A 176 ARG A 181 1 6 HELIX 3 3 CYS A 277 LYS A 291 1 15 SHEET 1 A 4 PHE A 109 PHE A 113 0 SHEET 2 A 4 THR A 140 VAL A 147 -1 O GLN A 144 N GLY A 112 SHEET 3 A 4 THR A 230 TYR A 236 -1 O THR A 230 N LEU A 145 SHEET 4 A 4 ILE A 195 GLU A 198 -1 N GLU A 198 O HIS A 233 SHEET 1 B 7 CYS A 124 SER A 127 0 SHEET 2 B 7 LYS A 132 CYS A 135 -1 O LYS A 132 N SER A 127 SHEET 3 B 7 LEU A 264 VAL A 274 1 O GLU A 271 N MET A 133 SHEET 4 B 7 ILE A 251 GLU A 258 -1 N LEU A 257 O LEU A 265 SHEET 5 B 7 ARG A 156 TYR A 163 -1 N ILE A 162 O LEU A 252 SHEET 6 B 7 HIS A 214 PRO A 219 -1 O VAL A 218 N PHE A 157 SHEET 7 B 7 GLU A 204 ASP A 207 -1 N LEU A 206 O SER A 215 LINK SG CYS A 176 ZN ZN A 401 1555 1555 2.38 LINK ND1 HIS A 179 ZN ZN A 401 1555 1555 2.08 LINK SG CYS A 238 ZN ZN A 401 1555 1555 2.43 LINK SG CYS A 242 ZN ZN A 401 1555 1555 2.29 SITE 1 AC1 4 CYS A 176 HIS A 179 CYS A 238 CYS A 242 CRYST1 107.268 51.128 33.814 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009322 0.000000 0.000000 0.00000 SCALE2 0.000000 0.019559 0.000000 0.00000 SCALE3 0.000000 0.000000 0.029573 0.00000