HEADER SIGNALING PROTEIN 15-JUL-13 4LP5 TITLE CRYSTAL STRUCTURE OF THE FULL-LENGTH HUMAN RAGE EXTRACELLULAR DOMAIN TITLE 2 (VC1C2 FRAGMENT) COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADVANCED GLYCOSYLATION END PRODUCT-SPECIFIC RECEPTOR; COMPND 3 CHAIN: B, A; COMPND 4 FRAGMENT: V, C1 AND C2 DOMAINS (VC1C2 FRAGMENT), FULL-LENGTH COMPND 5 ECTODOMAIN (UNP RESIDUES 23-323); COMPND 6 SYNONYM: RECEPTOR FOR ADVANCED GLYCOSYLATION END PRODUCTS; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: AGER, RAGE; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: SHUFFLE T7 EXPRESS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PETM11 KEYWDS IMMUNOGLOBULIN FOLD, PATTERN RECOGNITION RECEPTOR, SIGNALING KEYWDS 2 RECEPTOR, MEMBRANE, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR L.YATIME,G.R.ANDERSEN REVDAT 6 20-SEP-23 4LP5 1 SEQADV REVDAT 5 15-NOV-17 4LP5 1 REMARK REVDAT 4 18-DEC-13 4LP5 1 JRNL REVDAT 3 27-NOV-13 4LP5 1 JRNL REVDAT 2 30-OCT-13 4LP5 1 JRNL REVDAT 1 16-OCT-13 4LP5 0 JRNL AUTH L.YATIME,G.R.ANDERSEN JRNL TITL STRUCTURAL INSIGHTS INTO THE OLIGOMERIZATION MODE OF THE JRNL TITL 2 HUMAN RECEPTOR FOR ADVANCED GLYCATION END-PRODUCTS. JRNL REF FEBS J. V. 280 6556 2013 JRNL REFN ISSN 1742-464X JRNL PMID 24119142 JRNL DOI 10.1111/FEBS.12556 REMARK 2 REMARK 2 RESOLUTION. 3.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.2_1309 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : MLHL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.18 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.5 REMARK 3 NUMBER OF REFLECTIONS : 8799 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.247 REMARK 3 R VALUE (WORKING SET) : 0.242 REMARK 3 FREE R VALUE : 0.286 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.110 REMARK 3 FREE R VALUE TEST SET COUNT : 890 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.1797 - 6.8853 0.98 1407 161 0.2101 0.2471 REMARK 3 2 6.8853 - 5.4747 1.00 1358 169 0.2785 0.3006 REMARK 3 3 5.4747 - 4.7854 1.00 1364 168 0.2371 0.2820 REMARK 3 4 4.7854 - 4.3492 1.00 1379 147 0.2401 0.2914 REMARK 3 5 4.3492 - 4.0382 1.00 1382 134 0.2655 0.3608 REMARK 3 6 4.0382 - 3.8000 0.75 1019 111 0.3476 0.3991 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.550 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 36.660 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 136.0 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 130.5 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 4013 REMARK 3 ANGLE : 0.980 5467 REMARK 3 CHIRALITY : 0.056 598 REMARK 3 PLANARITY : 0.006 726 REMARK 3 DIHEDRAL : 16.289 1533 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND RESID 23:117 REMARK 3 ORIGIN FOR THE GROUP (A): 56.7810 -42.1847 6.5373 REMARK 3 T TENSOR REMARK 3 T11: 1.0611 T22: 1.1115 REMARK 3 T33: 1.0513 T12: 0.1636 REMARK 3 T13: 0.4072 T23: 0.0014 REMARK 3 L TENSOR REMARK 3 L11: 4.3974 L22: 8.5870 REMARK 3 L33: 8.2848 L12: 0.9144 REMARK 3 L13: 0.8209 L23: -2.5515 REMARK 3 S TENSOR REMARK 3 S11: 0.4781 S12: -1.8814 S13: 0.5663 REMARK 3 S21: 1.0052 S22: -0.4230 S23: 1.1844 REMARK 3 S31: 0.6198 S32: 0.1667 S33: 0.2279 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND RESID 118:231 REMARK 3 ORIGIN FOR THE GROUP (A): 84.8956 -30.0762 -19.8720 REMARK 3 T TENSOR REMARK 3 T11: 0.9127 T22: 1.3557 REMARK 3 T33: 1.1953 T12: -0.0129 REMARK 3 T13: 0.1457 T23: 0.2094 REMARK 3 L TENSOR REMARK 3 L11: 5.0072 L22: 3.3487 REMARK 3 L33: 8.4851 L12: 0.7179 REMARK 3 L13: -2.9669 L23: -0.2363 REMARK 3 S TENSOR REMARK 3 S11: 0.6008 S12: 0.3764 S13: 0.7025 REMARK 3 S21: -0.5662 S22: 0.2871 S23: 0.4245 REMARK 3 S31: -0.8027 S32: 0.2722 S33: -1.0453 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN B AND RESID 23:117 REMARK 3 ORIGIN FOR THE GROUP (A): 55.0311 -18.3180 7.2659 REMARK 3 T TENSOR REMARK 3 T11: 1.1533 T22: 1.0447 REMARK 3 T33: 2.7747 T12: -0.1211 REMARK 3 T13: 0.4734 T23: -0.4547 REMARK 3 L TENSOR REMARK 3 L11: 6.8455 L22: 5.3024 REMARK 3 L33: 8.9957 L12: -1.7250 REMARK 3 L13: -0.4241 L23: 0.3500 REMARK 3 S TENSOR REMARK 3 S11: 0.5660 S12: -1.5042 S13: 2.7743 REMARK 3 S21: 0.7906 S22: -0.3045 S23: 0.6483 REMARK 3 S31: -0.7846 S32: 1.6553 S33: -0.0980 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN B AND RESID 118:231 REMARK 3 ORIGIN FOR THE GROUP (A): 17.5706 -31.6420 -0.3564 REMARK 3 T TENSOR REMARK 3 T11: 0.8705 T22: 0.8291 REMARK 3 T33: 2.9672 T12: -0.0268 REMARK 3 T13: 0.4556 T23: -0.0566 REMARK 3 L TENSOR REMARK 3 L11: 6.8865 L22: 2.3426 REMARK 3 L33: 1.1999 L12: 1.7470 REMARK 3 L13: 0.7518 L23: 1.5563 REMARK 3 S TENSOR REMARK 3 S11: 0.3813 S12: -0.7976 S13: 1.1333 REMARK 3 S21: -0.0855 S22: 0.1107 S23: 0.2877 REMARK 3 S31: 0.1833 S32: -0.5393 S33: 0.1352 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND RESID 232:321 REMARK 3 ORIGIN FOR THE GROUP (A): 127.9787 -29.5181 -46.7347 REMARK 3 T TENSOR REMARK 3 T11: 0.5911 T22: 0.9097 REMARK 3 T33: 1.2641 T12: -0.0895 REMARK 3 T13: 0.0761 T23: -0.3464 REMARK 3 L TENSOR REMARK 3 L11: 7.8903 L22: 2.2462 REMARK 3 L33: 8.8631 L12: 1.8282 REMARK 3 L13: -0.3862 L23: -2.4739 REMARK 3 S TENSOR REMARK 3 S11: 0.5284 S12: 0.2625 S13: 0.2079 REMARK 3 S21: -0.3914 S22: 0.3713 S23: -1.3373 REMARK 3 S31: 0.0901 S32: -0.8364 S33: -0.5477 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4LP5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-AUG-13. REMARK 100 THE DEPOSITION ID IS D_1000080910. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-OCT-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8902 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.800 REMARK 200 RESOLUTION RANGE LOW (A) : 80.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 200 DATA REDUNDANCY : 10.80 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 23.2300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 72.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.84300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.940 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4LP4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.88 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M TRIS, 10% ETHANOL, PH 8.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 32.63333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 16.31667 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 24.47500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 8.15833 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 40.79167 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B 20 REMARK 465 ALA B 21 REMARK 465 MET B 22 REMARK 465 PRO B 234 REMARK 465 LEU B 235 REMARK 465 GLU B 236 REMARK 465 GLU B 237 REMARK 465 VAL B 238 REMARK 465 GLN B 239 REMARK 465 LEU B 240 REMARK 465 VAL B 241 REMARK 465 VAL B 242 REMARK 465 GLU B 243 REMARK 465 PRO B 244 REMARK 465 GLU B 245 REMARK 465 GLY B 246 REMARK 465 GLY B 247 REMARK 465 ALA B 248 REMARK 465 VAL B 249 REMARK 465 ALA B 250 REMARK 465 PRO B 251 REMARK 465 GLY B 252 REMARK 465 GLY B 253 REMARK 465 THR B 254 REMARK 465 VAL B 255 REMARK 465 THR B 256 REMARK 465 LEU B 257 REMARK 465 THR B 258 REMARK 465 CYS B 259 REMARK 465 GLU B 260 REMARK 465 VAL B 261 REMARK 465 PRO B 262 REMARK 465 ALA B 263 REMARK 465 GLN B 264 REMARK 465 PRO B 265 REMARK 465 SER B 266 REMARK 465 PRO B 267 REMARK 465 GLN B 268 REMARK 465 ILE B 269 REMARK 465 HIS B 270 REMARK 465 TRP B 271 REMARK 465 MET B 272 REMARK 465 LYS B 273 REMARK 465 ASP B 274 REMARK 465 GLY B 275 REMARK 465 VAL B 276 REMARK 465 PRO B 277 REMARK 465 LEU B 278 REMARK 465 PRO B 279 REMARK 465 LEU B 280 REMARK 465 PRO B 281 REMARK 465 PRO B 282 REMARK 465 SER B 283 REMARK 465 PRO B 284 REMARK 465 VAL B 285 REMARK 465 LEU B 286 REMARK 465 ILE B 287 REMARK 465 LEU B 288 REMARK 465 PRO B 289 REMARK 465 GLU B 290 REMARK 465 ILE B 291 REMARK 465 GLY B 292 REMARK 465 PRO B 293 REMARK 465 GLN B 294 REMARK 465 ASP B 295 REMARK 465 GLN B 296 REMARK 465 GLY B 297 REMARK 465 THR B 298 REMARK 465 TYR B 299 REMARK 465 SER B 300 REMARK 465 CYS B 301 REMARK 465 VAL B 302 REMARK 465 ALA B 303 REMARK 465 THR B 304 REMARK 465 HIS B 305 REMARK 465 SER B 306 REMARK 465 SER B 307 REMARK 465 HIS B 308 REMARK 465 GLY B 309 REMARK 465 PRO B 310 REMARK 465 GLN B 311 REMARK 465 GLU B 312 REMARK 465 SER B 313 REMARK 465 ARG B 314 REMARK 465 ALA B 315 REMARK 465 VAL B 316 REMARK 465 SER B 317 REMARK 465 ILE B 318 REMARK 465 SER B 319 REMARK 465 ILE B 320 REMARK 465 ILE B 321 REMARK 465 GLU B 322 REMARK 465 PRO B 323 REMARK 465 GLU A 322 REMARK 465 PRO A 323 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O MET A 22 ND2 ASN A 112 1.89 REMARK 500 ND2 ASN A 54 O ALA A 60 2.10 REMARK 500 O LYS A 39 OG1 THR A 109 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG B 48 79.99 -105.17 REMARK 500 THR B 55 -158.61 -143.95 REMARK 500 ALA B 60 -62.34 -99.71 REMARK 500 PRO B 66 -171.54 -61.13 REMARK 500 GLU B 182 -61.10 -91.98 REMARK 500 ARG B 203 77.94 -116.96 REMARK 500 PRO B 215 39.83 -92.80 REMARK 500 ARG B 216 -81.50 -125.16 REMARK 500 GLU A 59 -70.23 -55.18 REMARK 500 ALA A 60 -82.38 -108.69 REMARK 500 VAL A 75 -68.21 -96.25 REMARK 500 ASN A 81 4.61 -69.73 REMARK 500 ASN A 103 -161.17 -77.43 REMARK 500 PRO A 166 45.00 -94.11 REMARK 500 ARG A 216 -67.01 -126.47 REMARK 500 VAL A 233 70.47 -113.20 REMARK 500 ALA A 263 -72.02 -47.23 REMARK 500 PRO A 279 91.64 -69.09 REMARK 500 HIS A 305 93.88 -160.12 REMARK 500 SER A 307 73.10 47.85 REMARK 500 SER A 313 -167.71 -128.78 REMARK 500 ALA A 315 78.81 -64.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4LP4 RELATED DB: PDB REMARK 900 SHORTER FRAGMENT OF THE SAME PROTEIN DBREF 4LP5 B 23 323 UNP Q15109 RAGE_HUMAN 23 323 DBREF 4LP5 A 23 323 UNP Q15109 RAGE_HUMAN 23 323 SEQADV 4LP5 GLY B 20 UNP Q15109 EXPRESSION TAG SEQADV 4LP5 ALA B 21 UNP Q15109 EXPRESSION TAG SEQADV 4LP5 MET B 22 UNP Q15109 EXPRESSION TAG SEQADV 4LP5 GLY A 20 UNP Q15109 EXPRESSION TAG SEQADV 4LP5 ALA A 21 UNP Q15109 EXPRESSION TAG SEQADV 4LP5 MET A 22 UNP Q15109 EXPRESSION TAG SEQRES 1 B 304 GLY ALA MET ALA GLN ASN ILE THR ALA ARG ILE GLY GLU SEQRES 2 B 304 PRO LEU VAL LEU LYS CYS LYS GLY ALA PRO LYS LYS PRO SEQRES 3 B 304 PRO GLN ARG LEU GLU TRP LYS LEU ASN THR GLY ARG THR SEQRES 4 B 304 GLU ALA TRP LYS VAL LEU SER PRO GLN GLY GLY GLY PRO SEQRES 5 B 304 TRP ASP SER VAL ALA ARG VAL LEU PRO ASN GLY SER LEU SEQRES 6 B 304 PHE LEU PRO ALA VAL GLY ILE GLN ASP GLU GLY ILE PHE SEQRES 7 B 304 ARG CYS GLN ALA MET ASN ARG ASN GLY LYS GLU THR LYS SEQRES 8 B 304 SER ASN TYR ARG VAL ARG VAL TYR GLN ILE PRO GLY LYS SEQRES 9 B 304 PRO GLU ILE VAL ASP SER ALA SER GLU LEU THR ALA GLY SEQRES 10 B 304 VAL PRO ASN LYS VAL GLY THR CYS VAL SER GLU GLY SER SEQRES 11 B 304 TYR PRO ALA GLY THR LEU SER TRP HIS LEU ASP GLY LYS SEQRES 12 B 304 PRO LEU VAL PRO ASN GLU LYS GLY VAL SER VAL LYS GLU SEQRES 13 B 304 GLN THR ARG ARG HIS PRO GLU THR GLY LEU PHE THR LEU SEQRES 14 B 304 GLN SER GLU LEU MET VAL THR PRO ALA ARG GLY GLY ASP SEQRES 15 B 304 PRO ARG PRO THR PHE SER CYS SER PHE SER PRO GLY LEU SEQRES 16 B 304 PRO ARG HIS ARG ALA LEU ARG THR ALA PRO ILE GLN PRO SEQRES 17 B 304 ARG VAL TRP GLU PRO VAL PRO LEU GLU GLU VAL GLN LEU SEQRES 18 B 304 VAL VAL GLU PRO GLU GLY GLY ALA VAL ALA PRO GLY GLY SEQRES 19 B 304 THR VAL THR LEU THR CYS GLU VAL PRO ALA GLN PRO SER SEQRES 20 B 304 PRO GLN ILE HIS TRP MET LYS ASP GLY VAL PRO LEU PRO SEQRES 21 B 304 LEU PRO PRO SER PRO VAL LEU ILE LEU PRO GLU ILE GLY SEQRES 22 B 304 PRO GLN ASP GLN GLY THR TYR SER CYS VAL ALA THR HIS SEQRES 23 B 304 SER SER HIS GLY PRO GLN GLU SER ARG ALA VAL SER ILE SEQRES 24 B 304 SER ILE ILE GLU PRO SEQRES 1 A 304 GLY ALA MET ALA GLN ASN ILE THR ALA ARG ILE GLY GLU SEQRES 2 A 304 PRO LEU VAL LEU LYS CYS LYS GLY ALA PRO LYS LYS PRO SEQRES 3 A 304 PRO GLN ARG LEU GLU TRP LYS LEU ASN THR GLY ARG THR SEQRES 4 A 304 GLU ALA TRP LYS VAL LEU SER PRO GLN GLY GLY GLY PRO SEQRES 5 A 304 TRP ASP SER VAL ALA ARG VAL LEU PRO ASN GLY SER LEU SEQRES 6 A 304 PHE LEU PRO ALA VAL GLY ILE GLN ASP GLU GLY ILE PHE SEQRES 7 A 304 ARG CYS GLN ALA MET ASN ARG ASN GLY LYS GLU THR LYS SEQRES 8 A 304 SER ASN TYR ARG VAL ARG VAL TYR GLN ILE PRO GLY LYS SEQRES 9 A 304 PRO GLU ILE VAL ASP SER ALA SER GLU LEU THR ALA GLY SEQRES 10 A 304 VAL PRO ASN LYS VAL GLY THR CYS VAL SER GLU GLY SER SEQRES 11 A 304 TYR PRO ALA GLY THR LEU SER TRP HIS LEU ASP GLY LYS SEQRES 12 A 304 PRO LEU VAL PRO ASN GLU LYS GLY VAL SER VAL LYS GLU SEQRES 13 A 304 GLN THR ARG ARG HIS PRO GLU THR GLY LEU PHE THR LEU SEQRES 14 A 304 GLN SER GLU LEU MET VAL THR PRO ALA ARG GLY GLY ASP SEQRES 15 A 304 PRO ARG PRO THR PHE SER CYS SER PHE SER PRO GLY LEU SEQRES 16 A 304 PRO ARG HIS ARG ALA LEU ARG THR ALA PRO ILE GLN PRO SEQRES 17 A 304 ARG VAL TRP GLU PRO VAL PRO LEU GLU GLU VAL GLN LEU SEQRES 18 A 304 VAL VAL GLU PRO GLU GLY GLY ALA VAL ALA PRO GLY GLY SEQRES 19 A 304 THR VAL THR LEU THR CYS GLU VAL PRO ALA GLN PRO SER SEQRES 20 A 304 PRO GLN ILE HIS TRP MET LYS ASP GLY VAL PRO LEU PRO SEQRES 21 A 304 LEU PRO PRO SER PRO VAL LEU ILE LEU PRO GLU ILE GLY SEQRES 22 A 304 PRO GLN ASP GLN GLY THR TYR SER CYS VAL ALA THR HIS SEQRES 23 A 304 SER SER HIS GLY PRO GLN GLU SER ARG ALA VAL SER ILE SEQRES 24 A 304 SER ILE ILE GLU PRO HELIX 1 1 PRO A 71 ALA A 76 1 6 HELIX 2 2 GLY A 90 ASP A 93 5 4 SHEET 1 A 5 ASN B 25 ARG B 29 0 SHEET 2 A 5 GLU B 108 TYR B 118 1 O ARG B 116 N ILE B 26 SHEET 3 A 5 GLY B 95 MET B 102 -1 N PHE B 97 O TYR B 113 SHEET 4 A 5 ARG B 48 ASN B 54 -1 N ASN B 54 O ILE B 96 SHEET 5 A 5 LYS B 62 VAL B 63 -1 O LYS B 62 N LEU B 53 SHEET 1 B 3 LEU B 34 LEU B 36 0 SHEET 2 B 3 LEU B 84 LEU B 86 -1 O LEU B 84 N LEU B 36 SHEET 3 B 3 ARG B 77 VAL B 78 -1 N ARG B 77 O PHE B 85 SHEET 1 C 4 GLU B 125 VAL B 127 0 SHEET 2 C 4 ASN B 139 SER B 149 -1 O THR B 143 N VAL B 127 SHEET 3 C 4 PHE B 186 VAL B 194 -1 O VAL B 194 N ASN B 139 SHEET 4 C 4 VAL B 171 ARG B 179 -1 N LYS B 174 O GLU B 191 SHEET 1 D 2 GLU B 132 THR B 134 0 SHEET 2 D 2 ARG B 228 TRP B 230 1 O ARG B 228 N LEU B 133 SHEET 1 E 3 THR B 154 LEU B 155 0 SHEET 2 E 3 SER B 209 SER B 211 -1 O SER B 211 N THR B 154 SHEET 3 E 3 LEU B 220 ARG B 221 -1 O LEU B 220 N PHE B 210 SHEET 1 F 3 LYS B 162 PRO B 163 0 SHEET 2 F 3 HIS B 158 LEU B 159 -1 N LEU B 159 O LYS B 162 SHEET 3 F 3 PHE B 206 SER B 207 -1 O SER B 207 N HIS B 158 SHEET 1 G 5 GLN A 24 ARG A 29 0 SHEET 2 G 5 GLU A 108 TYR A 118 1 O ARG A 116 N ILE A 26 SHEET 3 G 5 GLY A 95 MET A 102 -1 N CYS A 99 O SER A 111 SHEET 4 G 5 ARG A 48 THR A 55 -1 N LYS A 52 O ARG A 98 SHEET 5 G 5 LYS A 62 VAL A 63 -1 O LYS A 62 N LEU A 53 SHEET 1 H 3 LEU A 34 LEU A 36 0 SHEET 2 H 3 LEU A 84 LEU A 86 -1 O LEU A 84 N LEU A 36 SHEET 3 H 3 ARG A 77 VAL A 78 -1 N ARG A 77 O PHE A 85 SHEET 1 I 4 GLU A 125 VAL A 127 0 SHEET 2 I 4 ASN A 139 SER A 149 -1 O THR A 143 N VAL A 127 SHEET 3 I 4 PHE A 186 VAL A 194 -1 O LEU A 188 N SER A 146 SHEET 4 I 4 VAL A 171 ARG A 179 -1 N LYS A 174 O GLU A 191 SHEET 1 J 2 GLU A 132 THR A 134 0 SHEET 2 J 2 ARG A 228 TRP A 230 1 O TRP A 230 N LEU A 133 SHEET 1 K 4 LYS A 162 PRO A 163 0 SHEET 2 K 4 THR A 154 LEU A 159 -1 N LEU A 159 O LYS A 162 SHEET 3 K 4 PHE A 206 SER A 211 -1 O SER A 207 N HIS A 158 SHEET 4 K 4 LEU A 220 ARG A 221 -1 O LEU A 220 N PHE A 210 SHEET 1 L 3 GLN A 239 GLU A 243 0 SHEET 2 L 3 GLY A 252 GLU A 260 -1 O GLU A 260 N GLN A 239 SHEET 3 L 3 VAL A 285 ILE A 291 -1 O LEU A 286 N LEU A 257 SHEET 1 M 5 ALA A 248 VAL A 249 0 SHEET 2 M 5 VAL A 316 ILE A 320 1 O SER A 319 N VAL A 249 SHEET 3 M 5 GLY A 297 THR A 304 -1 N TYR A 299 O VAL A 316 SHEET 4 M 5 ILE A 269 LYS A 273 -1 N HIS A 270 O VAL A 302 SHEET 5 M 5 VAL A 276 PRO A 277 -1 O VAL A 276 N LYS A 273 SHEET 1 N 4 ALA A 248 VAL A 249 0 SHEET 2 N 4 VAL A 316 ILE A 320 1 O SER A 319 N VAL A 249 SHEET 3 N 4 GLY A 297 THR A 304 -1 N TYR A 299 O VAL A 316 SHEET 4 N 4 PRO A 310 GLN A 311 -1 O GLN A 311 N ALA A 303 SSBOND 1 CYS B 38 CYS B 99 1555 1555 2.03 SSBOND 2 CYS B 144 CYS B 208 1555 1555 2.03 SSBOND 3 CYS A 38 CYS A 99 1555 1555 2.03 SSBOND 4 CYS A 144 CYS A 208 1555 1555 2.04 SSBOND 5 CYS A 259 CYS A 301 1555 1555 2.03 CISPEP 1 PRO B 45 PRO B 46 0 5.50 CISPEP 2 GLU B 59 ALA B 60 0 3.47 CISPEP 3 TYR B 150 PRO B 151 0 -7.96 CISPEP 4 GLU B 168 LYS B 169 0 8.32 CISPEP 5 GLY A 20 ALA A 21 0 -2.08 CISPEP 6 PRO A 45 PRO A 46 0 2.93 CISPEP 7 TYR A 150 PRO A 151 0 -3.57 CISPEP 8 LYS A 169 GLY A 170 0 1.67 CISPEP 9 GLU A 243 PRO A 244 0 -0.90 CISPEP 10 GLY A 246 GLY A 247 0 1.12 CISPEP 11 ASP A 274 GLY A 275 0 -2.22 CISPEP 12 HIS A 305 SER A 306 0 -3.86 CISPEP 13 SER A 307 HIS A 308 0 -3.74 CISPEP 14 HIS A 308 GLY A 309 0 6.94 CRYST1 180.010 180.010 48.950 90.00 90.00 120.00 P 65 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005555 0.003207 0.000000 0.00000 SCALE2 0.000000 0.006415 0.000000 0.00000 SCALE3 0.000000 0.000000 0.020429 0.00000