HEADER VIRAL PROTEIN/REPLICATION INHIBITOR/RNA 17-JUL-13 4LQ3 TITLE CRYSTAL STRUCTURE OF HUMAN NOROVIRUS RNA-DEPENDENT RNA-POLYMERASE TITLE 2 BOUND TO THE INHIBITOR PPNDS COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA-DEPENDENT RNA-POLYMERASE; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: 5'-R(P*GP*G)-3'; COMPND 7 CHAIN: R; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NOROVIRUS; SOURCE 3 ORGANISM_TAXID: 142786; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 MOL_ID: 2; SOURCE 7 SYNTHETIC: YES KEYWDS RNA-DEPENDENT-RNA-POLYMERASE, RDRP-INHIBOTIR COMPLEX, VIRAL PROTEIN- KEYWDS 2 REPLICATION INHIBITOR-RNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.MILANI,D.TARANTINO,E.MASTRANGELO,R.CROCI REVDAT 3 28-FEB-24 4LQ3 1 REMARK SEQADV LINK REVDAT 2 05-NOV-14 4LQ3 1 AUTHOR REVDAT 1 12-FEB-14 4LQ3 0 JRNL AUTH D.TARANTINO,M.PEZZULLO,E.MASTRANGELO,R.CROCI,J.ROHAYEM, JRNL AUTH 2 I.ROBEL,M.BOLOGNESI,M.MILANI JRNL TITL NAPHTHALENE-SULFONATE INHIBITORS OF HUMAN NOROVIRUS JRNL TITL 2 RNA-DEPENDENT RNA-POLYMERASE. JRNL REF ANTIVIRAL RES. V. 102 23 2014 JRNL REFN ISSN 0166-3542 JRNL PMID 24316032 JRNL DOI 10.1016/J.ANTIVIRAL.2013.11.016 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.40 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 18061 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.223 REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : 0.285 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 985 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.67 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1308 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.49 REMARK 3 BIN R VALUE (WORKING SET) : 0.3520 REMARK 3 BIN FREE R VALUE SET COUNT : 68 REMARK 3 BIN FREE R VALUE : 0.4080 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3880 REMARK 3 NUCLEIC ACID ATOMS : 46 REMARK 3 HETEROGEN ATOMS : 157 REMARK 3 SOLVENT ATOMS : 132 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.01 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.50000 REMARK 3 B22 (A**2) : -1.33000 REMARK 3 B33 (A**2) : -0.17000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.092 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.365 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.929 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.886 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4189 ; 0.008 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 3835 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5715 ; 1.183 ; 2.004 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8880 ; 3.538 ; 3.002 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 489 ; 5.522 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 167 ;36.657 ;24.012 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 690 ;15.791 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;17.803 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 605 ; 0.061 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4578 ; 0.005 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 890 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4LQ3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-JUL-13. REMARK 100 THE DEPOSITION ID IS D_1000080943. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-APR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.072 REMARK 200 MONOCHROMATOR : SILICON MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 19046 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 38.400 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.56 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.2M SODIUM CITRATE, 0.1M SODIUM REMARK 280 CACODYLATE, 0.125M SODIUM CHLORIDE, PH 6.2, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 42.87500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 58.05000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 61.04500 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 42.87500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 58.05000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 61.04500 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 42.87500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 58.05000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 61.04500 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 42.87500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 58.05000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 61.04500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 700 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, R REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 0 REMARK 465 GLY A 1 REMARK 465 GLY A 2 REMARK 465 ASP A 3 REMARK 465 SER A 4 REMARK 465 LYS A 5 REMARK 465 GLY A 297 REMARK 465 LEU A 298 REMARK 465 LYS A 374 REMARK 465 THR A 375 REMARK 465 GLU A 376 REMARK 465 ILE A 431 REMARK 465 PRO A 432 REMARK 465 HIS A 433 REMARK 465 GLY A 469 REMARK 465 PHE A 473 REMARK 465 VAL A 511 REMARK 465 ASP A 512 REMARK 465 LYS A 513 REMARK 465 LEU A 514 REMARK 465 ALA A 515 REMARK 465 ALA A 516 REMARK 465 ALA A 517 REMARK 465 LEU A 518 REMARK 465 GLU A 519 REMARK 465 HIS A 520 REMARK 465 HIS A 521 REMARK 465 HIS A 522 REMARK 465 HIS A 523 REMARK 465 HIS A 524 REMARK 465 HIS A 525 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 392 -0.96 79.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 605 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 240 OD2 REMARK 620 2 ASP A 344 OD1 165.6 REMARK 620 3 GLU A 345 O 85.7 96.3 REMARK 620 4 THR A 389 O 85.6 108.2 98.1 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 20V A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 20V A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 20V A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 20V A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 605 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4LQ9 RELATED DB: PDB DBREF 4LQ3 A 3 510 UNP Q2N379 Q2N379_9CALI 3 510 DBREF 4LQ3 R 1 2 PDB 4LQ3 4LQ3 1 2 SEQADV 4LQ3 MET A 0 UNP Q2N379 EXPRESSION TAG SEQADV 4LQ3 GLY A 1 UNP Q2N379 EXPRESSION TAG SEQADV 4LQ3 GLY A 2 UNP Q2N379 EXPRESSION TAG SEQADV 4LQ3 GLY A 153 UNP Q2N379 GLU 153 CONFLICT SEQADV 4LQ3 VAL A 511 UNP Q2N379 EXPRESSION TAG SEQADV 4LQ3 ASP A 512 UNP Q2N379 EXPRESSION TAG SEQADV 4LQ3 LYS A 513 UNP Q2N379 EXPRESSION TAG SEQADV 4LQ3 LEU A 514 UNP Q2N379 EXPRESSION TAG SEQADV 4LQ3 ALA A 515 UNP Q2N379 EXPRESSION TAG SEQADV 4LQ3 ALA A 516 UNP Q2N379 EXPRESSION TAG SEQADV 4LQ3 ALA A 517 UNP Q2N379 EXPRESSION TAG SEQADV 4LQ3 LEU A 518 UNP Q2N379 EXPRESSION TAG SEQADV 4LQ3 GLU A 519 UNP Q2N379 EXPRESSION TAG SEQADV 4LQ3 HIS A 520 UNP Q2N379 EXPRESSION TAG SEQADV 4LQ3 HIS A 521 UNP Q2N379 EXPRESSION TAG SEQADV 4LQ3 HIS A 522 UNP Q2N379 EXPRESSION TAG SEQADV 4LQ3 HIS A 523 UNP Q2N379 EXPRESSION TAG SEQADV 4LQ3 HIS A 524 UNP Q2N379 EXPRESSION TAG SEQADV 4LQ3 HIS A 525 UNP Q2N379 EXPRESSION TAG SEQRES 1 A 526 MET GLY GLY ASP SER LYS GLY THR TYR CYS GLY ALA PRO SEQRES 2 A 526 ILE LEU GLY PRO GLY SER ALA PRO LYS LEU SER THR LYS SEQRES 3 A 526 THR LYS PHE TRP ARG SER SER THR THR PRO LEU PRO PRO SEQRES 4 A 526 GLY THR TYR GLU PRO ALA TYR LEU GLY GLY LYS ASP PRO SEQRES 5 A 526 ARG VAL LYS GLY GLY PRO SER LEU GLN GLN VAL MET ARG SEQRES 6 A 526 ASP GLN LEU LYS PRO PHE THR GLU PRO ARG GLY LYS PRO SEQRES 7 A 526 PRO LYS PRO SER VAL LEU GLU ALA ALA LYS LYS THR ILE SEQRES 8 A 526 ILE ASN VAL LEU GLU GLN THR ILE ASP PRO PRO GLU LYS SEQRES 9 A 526 TRP SER PHE THR GLN ALA CYS ALA SER LEU ASP LYS THR SEQRES 10 A 526 THR SER SER GLY HIS PRO HIS HIS MET ARG LYS ASN ASP SEQRES 11 A 526 CYS TRP ASN GLY GLU SER PHE THR GLY LYS LEU ALA ASP SEQRES 12 A 526 GLN ALA SER LYS ALA ASN LEU MET PHE GLU GLY GLY LYS SEQRES 13 A 526 ASN MET THR PRO VAL TYR THR GLY ALA LEU LYS ASP GLU SEQRES 14 A 526 LEU VAL LYS THR ASP LYS ILE TYR GLY LYS ILE LYS LYS SEQRES 15 A 526 ARG LEU LEU TRP GLY SER ASP LEU ALA THR MET ILE ARG SEQRES 16 A 526 CYS ALA ARG ALA PHE GLY GLY LEU MET ASP GLU LEU LYS SEQRES 17 A 526 ALA HIS CYS VAL THR LEU PRO ILE ARG VAL GLY MET ASN SEQRES 18 A 526 MET ASN GLU ASP GLY PRO ILE ILE PHE GLU ARG HIS SER SEQRES 19 A 526 ARG TYR LYS TYR HIS TYR ASP ALA ASP TYR SER ARG TRP SEQRES 20 A 526 ASP SER THR GLN GLN ARG ALA VAL LEU ALA ALA ALA LEU SEQRES 21 A 526 GLU ILE MET VAL LYS PHE SER SER GLU PRO HIS LEU ALA SEQRES 22 A 526 GLN VAL VAL ALA GLU ASP LEU LEU SER PRO SER VAL VAL SEQRES 23 A 526 ASP VAL GLY ASP PHE LYS ILE SER ILE ASN GLU GLY LEU SEQRES 24 A 526 PRO SER GLY VAL PRO CYS THR SER GLN TRP ASN SER ILE SEQRES 25 A 526 ALA HIS TRP LEU LEU THR LEU CYS ALA LEU SER GLU VAL SEQRES 26 A 526 THR ASN LEU SER PRO ASP ILE ILE GLN ALA ASN SER LEU SEQRES 27 A 526 PHE SER PHE TYR GLY ASP ASP GLU ILE VAL SER THR ASP SEQRES 28 A 526 ILE LYS LEU ASP PRO GLU LYS LEU THR ALA LYS LEU LYS SEQRES 29 A 526 GLU TYR GLY LEU LYS PRO THR ARG PRO ASP LYS THR GLU SEQRES 30 A 526 GLY PRO LEU VAL ILE SER GLU ASP LEU ASN GLY LEU THR SEQRES 31 A 526 PHE LEU ARG ARG THR VAL THR ARG ASP PRO ALA GLY TRP SEQRES 32 A 526 PHE GLY LYS LEU GLU GLN SER SER ILE LEU ARG GLN MET SEQRES 33 A 526 TYR TRP THR ARG GLY PRO ASN HIS GLU ASP PRO SER GLU SEQRES 34 A 526 THR MET ILE PRO HIS SER GLN ARG PRO ILE GLN LEU MET SEQRES 35 A 526 SER LEU LEU GLY GLU ALA ALA LEU HIS GLY PRO ALA PHE SEQRES 36 A 526 TYR SER LYS ILE SER LYS LEU VAL ILE ALA GLU LEU LYS SEQRES 37 A 526 GLU GLY GLY MET ASP PHE TYR VAL PRO ARG GLN GLU PRO SEQRES 38 A 526 MET PHE ARG TRP MET ARG PHE SER ASP LEU SER THR TRP SEQRES 39 A 526 GLU GLY ASP ARG ASN LEU ALA PRO SER PHE VAL ASN GLU SEQRES 40 A 526 ASP GLY VAL GLU VAL ASP LYS LEU ALA ALA ALA LEU GLU SEQRES 41 A 526 HIS HIS HIS HIS HIS HIS SEQRES 1 R 2 G G HET 20V A 601 39 HET 20V A 602 39 HET 20V A 603 39 HET 20V A 604 39 HET MG A 605 1 HETNAM 20V 3-[(E)-{4-FORMYL-5-HYDROXY-6-METHYL-3-[(PHOSPHONOOXY) HETNAM 2 20V METHYL]PYRIDIN-2-YL}DIAZENYL]-7-NITRONAPHTHALENE-1,5- HETNAM 3 20V DISULFONIC ACID HETNAM MG MAGNESIUM ION HETSYN 20V PPNDS; PYRIDOXAL-5'-PHOSPHATE-6-(2'-NAPHTHYLAZO-6'- HETSYN 2 20V NITRO-4',8'-DISULFONIC ACID) FORMUL 3 20V 4(C18 H15 N4 O14 P S2) FORMUL 7 MG MG 2+ FORMUL 8 HOH *132(H2 O) HELIX 1 1 SER A 58 GLU A 72 1 15 HELIX 2 2 LYS A 79 ILE A 98 1 20 HELIX 3 3 SER A 105 LEU A 113 1 9 HELIX 4 4 ARG A 126 TRP A 131 5 6 HELIX 5 5 THR A 137 GLY A 154 1 18 HELIX 6 6 LYS A 171 ILE A 175 5 5 HELIX 7 7 ASP A 188 ALA A 208 1 21 HELIX 8 8 GLU A 223 ARG A 234 1 12 HELIX 9 9 TRP A 246 GLN A 250 5 5 HELIX 10 10 GLN A 251 PHE A 265 1 15 HELIX 11 11 GLU A 268 SER A 281 1 14 HELIX 12 12 CYS A 304 ASN A 326 1 23 HELIX 13 13 SER A 328 ASN A 335 1 8 HELIX 14 14 ASP A 354 TYR A 365 1 12 HELIX 15 15 GLU A 407 GLN A 414 1 8 HELIX 16 16 GLN A 435 LEU A 449 1 15 HELIX 17 17 GLY A 451 LYS A 467 1 17 HELIX 18 18 ARG A 477 SER A 488 1 12 HELIX 19 19 ASP A 496 ALA A 500 5 5 SHEET 1 A 6 THR A 7 TYR A 8 0 SHEET 2 A 6 ALA A 11 PRO A 16 -1 O ALA A 11 N TYR A 8 SHEET 3 A 6 PHE A 290 ILE A 294 -1 O LYS A 291 N LEU A 14 SHEET 4 A 6 SER A 283 ASP A 286 -1 N SER A 283 O ILE A 294 SHEET 5 A 6 VAL A 160 LEU A 165 1 N TYR A 161 O VAL A 284 SHEET 6 A 6 LEU A 183 SER A 187 -1 O LEU A 184 N ALA A 164 SHEET 1 B 2 THR A 26 ARG A 30 0 SHEET 2 B 2 TRP A 417 HIS A 423 -1 O GLY A 420 N LYS A 27 SHEET 1 C 2 GLU A 42 PRO A 43 0 SHEET 2 C 2 LEU A 169 VAL A 170 -1 O VAL A 170 N GLU A 42 SHEET 1 D 3 TYR A 237 TYR A 239 0 SHEET 2 D 3 ASP A 344 THR A 349 -1 O VAL A 347 N TYR A 239 SHEET 3 D 3 SER A 336 TYR A 341 -1 N LEU A 337 O SER A 348 SHEET 1 E 3 THR A 389 PHE A 390 0 SHEET 2 E 3 ARG A 393 ASP A 398 -1 O ARG A 393 N PHE A 390 SHEET 3 E 3 GLY A 401 LEU A 406 -1 O LYS A 405 N THR A 394 LINK OD2 ASP A 240 MG MG A 605 1555 1555 2.46 LINK OD1 ASP A 344 MG MG A 605 1555 1555 2.31 LINK O GLU A 345 MG MG A 605 1555 1555 2.55 LINK O THR A 389 MG MG A 605 1555 1555 2.31 CISPEP 1 HIS A 121 PRO A 122 0 -4.39 CISPEP 2 VAL A 509 GLU A 510 0 -5.75 SITE 1 AC1 8 LYS A 146 GLU A 323 VAL A 324 THR A 325 SITE 2 AC1 8 ASN A 326 ASP A 354 LYS A 357 20V A 602 SITE 1 AC2 6 PRO A 122 HIS A 123 ASP A 142 GLN A 143 SITE 2 AC2 6 LYS A 357 20V A 601 SITE 1 AC3 14 LYS A 166 ASP A 167 GLU A 168 ARG A 392 SITE 2 AC3 14 LEU A 406 SER A 410 ILE A 411 ARG A 413 SITE 3 AC3 14 GLN A 414 ARG A 419 GLN A 439 LEU A 443 SITE 4 AC3 14 ASP A 507 GLU A 510 SITE 1 AC4 5 ARG A 252 ILE A 463 ALA A 464 LYS A 467 SITE 2 AC4 5 HOH A 789 SITE 1 AC5 4 ASP A 240 ASP A 344 GLU A 345 THR A 389 CRYST1 85.750 116.100 122.090 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011662 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008613 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008191 0.00000