HEADER VIRAL PROTEIN 18-JUL-13 4LQK TITLE STRUCTURE OF THE VACCINIA VIRUS NF- B ANTAGONIST A46 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN A46; COMPND 3 CHAIN: C, D, A, B; COMPND 4 FRAGMENT: UNP RESIDUES 87-229; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VACCINIA VIRUS; SOURCE 3 ORGANISM_COMMON: VACV; SOURCE 4 ORGANISM_TAXID: 10254; SOURCE 5 STRAIN: WESTERN RESERVE; SOURCE 6 GENE: VACWR172, A46R; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS BCL-2-LIKE FOLD, VIRAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR I.GRISHKOVSKAYA,S.FEDOSYUK,T.SKERN,K.DJINOVIC-CARUGO REVDAT 5 14-AUG-19 4LQK 1 REMARK REVDAT 4 17-JUL-19 4LQK 1 REMARK LINK REVDAT 3 15-NOV-17 4LQK 1 REMARK REVDAT 2 05-MAR-14 4LQK 1 JRNL REVDAT 1 25-DEC-13 4LQK 0 JRNL AUTH S.FEDOSYUK,I.GRISHKOVSKAYA,E.DE ALMEIDA RIBEIRO,T.SKERN JRNL TITL CHARACTERIZATION AND STRUCTURE OF THE VACCINIA VIRUS JRNL TITL 2 NF-KAPPA B ANTAGONIST A46. JRNL REF J.BIOL.CHEM. V. 289 3749 2014 JRNL REFN ISSN 0021-9258 JRNL PMID 24356965 JRNL DOI 10.1074/JBC.M113.512756 REMARK 2 REMARK 2 RESOLUTION. 1.99 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.99 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.46 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 51639 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.219 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2759 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.99 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.04 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3577 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.59 REMARK 3 BIN R VALUE (WORKING SET) : 0.3100 REMARK 3 BIN FREE R VALUE SET COUNT : 159 REMARK 3 BIN FREE R VALUE : 0.3490 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4352 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 229 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.76 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.36000 REMARK 3 B22 (A**2) : -0.22000 REMARK 3 B33 (A**2) : -0.15000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.151 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.134 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.101 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.731 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): NULL ; NULL ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): NULL ; NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4LQK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-JUL-13. REMARK 100 THE DEPOSITION ID IS D_1000080960. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-FEB-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : SI(311) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54421 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.990 REMARK 200 RESOLUTION RANGE LOW (A) : 75.924 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 7.900 REMARK 200 R MERGE (I) : 0.16300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.99 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.04 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.4 REMARK 200 DATA REDUNDANCY IN SHELL : 7.80 REMARK 200 R MERGE FOR SHELL (I) : 1.80900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXCD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.51 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM BIS-TRIS-PROPANE PH 7.5, 150 MM REMARK 280 NABR, 18% PEG3350, VAPOR DIFFUSION, TEMPERATURE 295.15K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.94950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 68.94950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 53.55700 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 53.81650 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 53.55700 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 53.81650 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 68.94950 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 53.55700 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 53.81650 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 68.94950 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 53.55700 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 53.81650 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: 2 DIMERS MOLECULES PRESENT IN ASYMMETRIC UNIT BETWEEN REMARK 300 MONOMERS C AND D; AND A AND B REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1520 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13130 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1680 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -16.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH D 409 LIES ON A SPECIAL POSITION. REMARK 375 HOH D 436 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 412 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 442 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN C 87 REMARK 465 LYS C 88 REMARK 465 TYR C 89 REMARK 465 PHE C 222 REMARK 465 GLU C 223 REMARK 465 ASP C 224 REMARK 465 ASP C 225 REMARK 465 ASP C 226 REMARK 465 SER C 227 REMARK 465 SER C 228 REMARK 465 THR C 229 REMARK 465 ASN D 87 REMARK 465 LYS D 88 REMARK 465 TYR D 89 REMARK 465 ASP D 225 REMARK 465 ASP D 226 REMARK 465 SER D 227 REMARK 465 SER D 228 REMARK 465 THR D 229 REMARK 465 ASN A 87 REMARK 465 LYS A 88 REMARK 465 TYR A 89 REMARK 465 PHE A 222 REMARK 465 GLU A 223 REMARK 465 ASP A 224 REMARK 465 ASP A 225 REMARK 465 ASP A 226 REMARK 465 SER A 227 REMARK 465 SER A 228 REMARK 465 THR A 229 REMARK 465 ASN B 87 REMARK 465 LYS B 88 REMARK 465 TYR B 89 REMARK 465 ASP B 225 REMARK 465 ASP B 226 REMARK 465 SER B 227 REMARK 465 SER B 228 REMARK 465 THR B 229 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP D 157 71.50 -156.62 REMARK 500 MSE B 153 0.95 -66.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA D 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BR B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 302 DBREF 4LQK C 87 229 UNP P26672 A46_VACCW 87 229 DBREF 4LQK D 87 229 UNP P26672 A46_VACCW 87 229 DBREF 4LQK A 87 229 UNP P26672 A46_VACCW 87 229 DBREF 4LQK B 87 229 UNP P26672 A46_VACCW 87 229 SEQADV 4LQK SER C 205 UNP P26672 CYS 205 ENGINEERED MUTATION SEQADV 4LQK SER D 205 UNP P26672 CYS 205 ENGINEERED MUTATION SEQADV 4LQK SER A 205 UNP P26672 CYS 205 ENGINEERED MUTATION SEQADV 4LQK SER B 205 UNP P26672 CYS 205 ENGINEERED MUTATION SEQRES 1 C 143 ASN LYS TYR SER PHE LYS LEU ILE LEU ALA GLU TYR ILE SEQRES 2 C 143 ARG HIS ARG ASN THR ILE SER GLY ASN ILE TYR SER ALA SEQRES 3 C 143 LEU MSE THR LEU ASP ASP LEU ALA ILE LYS GLN TYR GLY SEQRES 4 C 143 ASP ILE ASP LEU LEU PHE ASN GLU LYS LEU LYS VAL ASP SEQRES 5 C 143 SER ASP SER GLY LEU PHE ASP PHE VAL ASN PHE VAL LYS SEQRES 6 C 143 ASP MSE ILE CYS CYS ASP SER ARG ILE VAL VAL ALA LEU SEQRES 7 C 143 SER SER LEU VAL SER LYS HIS TRP GLU LEU THR ASN LYS SEQRES 8 C 143 LYS TYR ARG CYS MSE ALA LEU ALA GLU HIS ILE SER ASP SEQRES 9 C 143 SER ILE PRO ILE SER GLU LEU SER ARG LEU ARG TYR ASN SEQRES 10 C 143 LEU SER LYS TYR LEU ARG GLY HIS THR GLU SER ILE GLU SEQRES 11 C 143 ASP LYS PHE ASP TYR PHE GLU ASP ASP ASP SER SER THR SEQRES 1 D 143 ASN LYS TYR SER PHE LYS LEU ILE LEU ALA GLU TYR ILE SEQRES 2 D 143 ARG HIS ARG ASN THR ILE SER GLY ASN ILE TYR SER ALA SEQRES 3 D 143 LEU MSE THR LEU ASP ASP LEU ALA ILE LYS GLN TYR GLY SEQRES 4 D 143 ASP ILE ASP LEU LEU PHE ASN GLU LYS LEU LYS VAL ASP SEQRES 5 D 143 SER ASP SER GLY LEU PHE ASP PHE VAL ASN PHE VAL LYS SEQRES 6 D 143 ASP MSE ILE CYS CYS ASP SER ARG ILE VAL VAL ALA LEU SEQRES 7 D 143 SER SER LEU VAL SER LYS HIS TRP GLU LEU THR ASN LYS SEQRES 8 D 143 LYS TYR ARG CYS MSE ALA LEU ALA GLU HIS ILE SER ASP SEQRES 9 D 143 SER ILE PRO ILE SER GLU LEU SER ARG LEU ARG TYR ASN SEQRES 10 D 143 LEU SER LYS TYR LEU ARG GLY HIS THR GLU SER ILE GLU SEQRES 11 D 143 ASP LYS PHE ASP TYR PHE GLU ASP ASP ASP SER SER THR SEQRES 1 A 143 ASN LYS TYR SER PHE LYS LEU ILE LEU ALA GLU TYR ILE SEQRES 2 A 143 ARG HIS ARG ASN THR ILE SER GLY ASN ILE TYR SER ALA SEQRES 3 A 143 LEU MSE THR LEU ASP ASP LEU ALA ILE LYS GLN TYR GLY SEQRES 4 A 143 ASP ILE ASP LEU LEU PHE ASN GLU LYS LEU LYS VAL ASP SEQRES 5 A 143 SER ASP SER GLY LEU PHE ASP PHE VAL ASN PHE VAL LYS SEQRES 6 A 143 ASP MSE ILE CYS CYS ASP SER ARG ILE VAL VAL ALA LEU SEQRES 7 A 143 SER SER LEU VAL SER LYS HIS TRP GLU LEU THR ASN LYS SEQRES 8 A 143 LYS TYR ARG CYS MSE ALA LEU ALA GLU HIS ILE SER ASP SEQRES 9 A 143 SER ILE PRO ILE SER GLU LEU SER ARG LEU ARG TYR ASN SEQRES 10 A 143 LEU SER LYS TYR LEU ARG GLY HIS THR GLU SER ILE GLU SEQRES 11 A 143 ASP LYS PHE ASP TYR PHE GLU ASP ASP ASP SER SER THR SEQRES 1 B 143 ASN LYS TYR SER PHE LYS LEU ILE LEU ALA GLU TYR ILE SEQRES 2 B 143 ARG HIS ARG ASN THR ILE SER GLY ASN ILE TYR SER ALA SEQRES 3 B 143 LEU MSE THR LEU ASP ASP LEU ALA ILE LYS GLN TYR GLY SEQRES 4 B 143 ASP ILE ASP LEU LEU PHE ASN GLU LYS LEU LYS VAL ASP SEQRES 5 B 143 SER ASP SER GLY LEU PHE ASP PHE VAL ASN PHE VAL LYS SEQRES 6 B 143 ASP MSE ILE CYS CYS ASP SER ARG ILE VAL VAL ALA LEU SEQRES 7 B 143 SER SER LEU VAL SER LYS HIS TRP GLU LEU THR ASN LYS SEQRES 8 B 143 LYS TYR ARG CYS MSE ALA LEU ALA GLU HIS ILE SER ASP SEQRES 9 B 143 SER ILE PRO ILE SER GLU LEU SER ARG LEU ARG TYR ASN SEQRES 10 B 143 LEU SER LYS TYR LEU ARG GLY HIS THR GLU SER ILE GLU SEQRES 11 B 143 ASP LYS PHE ASP TYR PHE GLU ASP ASP ASP SER SER THR MODRES 4LQK MSE C 114 MET SELENOMETHIONINE MODRES 4LQK MSE C 153 MET SELENOMETHIONINE MODRES 4LQK MSE C 182 MET SELENOMETHIONINE MODRES 4LQK MSE D 114 MET SELENOMETHIONINE MODRES 4LQK MSE D 153 MET SELENOMETHIONINE MODRES 4LQK MSE D 182 MET SELENOMETHIONINE MODRES 4LQK MSE A 114 MET SELENOMETHIONINE MODRES 4LQK MSE A 153 MET SELENOMETHIONINE MODRES 4LQK MSE A 182 MET SELENOMETHIONINE MODRES 4LQK MSE B 114 MET SELENOMETHIONINE MODRES 4LQK MSE B 153 MET SELENOMETHIONINE MODRES 4LQK MSE B 182 MET SELENOMETHIONINE HET MSE C 114 8 HET MSE C 153 8 HET MSE C 182 8 HET MSE D 114 8 HET MSE D 153 8 HET MSE D 182 13 HET MSE A 114 8 HET MSE A 153 13 HET MSE A 182 13 HET MSE B 114 8 HET MSE B 153 8 HET MSE B 182 13 HET NA D 301 1 HET BR B 301 1 HET NA B 302 1 HETNAM MSE SELENOMETHIONINE HETNAM NA SODIUM ION HETNAM BR BROMIDE ION FORMUL 1 MSE 12(C5 H11 N O2 SE) FORMUL 5 NA 2(NA 1+) FORMUL 6 BR BR 1- FORMUL 8 HOH *229(H2 O) HELIX 1 1 SER C 90 ARG C 102 1 13 HELIX 2 2 GLY C 107 THR C 115 1 9 HELIX 3 3 LEU C 116 GLY C 125 1 10 HELIX 4 4 ASP C 126 GLU C 133 1 8 HELIX 5 5 SER C 141 LYS C 151 1 11 HELIX 6 6 ASP C 157 LEU C 174 1 18 HELIX 7 7 LYS C 177 ILE C 192 1 16 HELIX 8 8 PRO C 193 ARG C 209 1 17 HELIX 9 9 PHE D 91 HIS D 101 1 11 HELIX 10 10 GLY D 107 THR D 115 1 9 HELIX 11 11 LEU D 116 GLY D 125 1 10 HELIX 12 12 ASP D 126 GLU D 133 1 8 HELIX 13 13 SER D 141 LYS D 151 1 11 HELIX 14 14 ASP D 152 ILE D 154 5 3 HELIX 15 15 ASP D 157 THR D 175 1 19 HELIX 16 16 LYS D 177 ILE D 192 1 16 HELIX 17 17 PRO D 193 ARG D 209 1 17 HELIX 18 18 PHE A 91 HIS A 101 1 11 HELIX 19 19 GLY A 107 THR A 115 1 9 HELIX 20 20 LEU A 116 GLY A 125 1 10 HELIX 21 21 ASP A 126 GLU A 133 1 8 HELIX 22 22 SER A 141 LYS A 151 1 11 HELIX 23 23 ASP A 152 ILE A 154 5 3 HELIX 24 24 ASP A 157 THR A 175 1 19 HELIX 25 25 LYS A 177 ILE A 192 1 16 HELIX 26 26 PRO A 193 ARG A 209 1 17 HELIX 27 27 PHE B 91 ARG B 102 1 12 HELIX 28 28 GLY B 107 THR B 115 1 9 HELIX 29 29 LEU B 116 GLY B 125 1 10 HELIX 30 30 ASP B 126 GLU B 133 1 8 HELIX 31 31 SER B 141 LYS B 151 1 11 HELIX 32 32 ASP B 157 THR B 175 1 19 HELIX 33 33 LYS B 177 ILE B 192 1 16 HELIX 34 34 PRO B 193 ARG B 209 1 17 SSBOND 1 CYS A 155 CYS A 156 1555 1555 2.06 LINK C LEU C 113 N MSE C 114 1555 1555 1.34 LINK C MSE C 114 N THR C 115 1555 1555 1.33 LINK C ASP C 152 N MSE C 153 1555 1555 1.32 LINK C MSE C 153 N ILE C 154 1555 1555 1.33 LINK C CYS C 181 N MSE C 182 1555 1555 1.34 LINK C MSE C 182 N ALA C 183 1555 1555 1.33 LINK C LEU D 113 N MSE D 114 1555 1555 1.33 LINK C MSE D 114 N THR D 115 1555 1555 1.33 LINK C ASP D 152 N MSE D 153 1555 1555 1.33 LINK C MSE D 153 N ILE D 154 1555 1555 1.33 LINK C CYS D 181 N MSE D 182 1555 1555 1.33 LINK C MSE D 182 N ALA D 183 1555 1555 1.32 LINK C LEU A 113 N MSE A 114 1555 1555 1.33 LINK C MSE A 114 N THR A 115 1555 1555 1.34 LINK C ASP A 152 N MSE A 153 1555 1555 1.33 LINK C MSE A 153 N ILE A 154 1555 1555 1.33 LINK C CYS A 181 N MSE A 182 1555 1555 1.33 LINK C MSE A 182 N ALA A 183 1555 1555 1.32 LINK C LEU B 113 N MSE B 114 1555 1555 1.33 LINK C MSE B 114 N THR B 115 1555 1555 1.33 LINK C ASP B 152 N MSE B 153 1555 1555 1.34 LINK C MSE B 153 N ILE B 154 1555 1555 1.34 LINK C CYS B 181 N MSE B 182 1555 1555 1.33 LINK C MSE B 182 N ALA B 183 1555 1555 1.33 LINK OG SER B 205 NA NA B 302 1555 1555 3.05 LINK OG SER D 205 NA NA D 301 1555 1555 3.10 SITE 1 AC1 2 TYR D 202 SER D 205 SITE 1 AC2 2 ARG B 100 MSE B 182 SITE 1 AC3 3 TYR B 202 SER B 205 LYS B 206 CRYST1 107.114 107.633 137.899 90.00 90.00 90.00 C 2 2 21 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009336 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009291 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007252 0.00000