HEADER ISOMERASE 19-JUL-13 4LQW TITLE CRYSTAL STRUCTURE OF HIV-1 CAPSID N-TERMINAL DOMAIN IN COMPLEX WITH TITLE 2 NUP358 CYCLOPHILIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: E3 SUMO-PROTEIN LIGASE RANBP2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 3057-3224; COMPND 5 SYNONYM: 358 KDA NUCLEOPORIN, NUCLEAR PORE COMPLEX PROTEIN NUP358, COMPND 6 NUCLEOPORIN NUP358, RAN-BINDING PROTEIN 2, RANBP2, P270, PUTATIVE COMPND 7 PEPTIDYL-PROLYL CIS-TRANS ISOMERASE, PPIASE, ROTAMASE; COMPND 8 EC: 6.3.2.-, 5.2.1.8; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: CAPSID PROTEIN P24; COMPND 12 CHAIN: C, D; COMPND 13 FRAGMENT: UNP RESIDUES 133-278; COMPND 14 SYNONYM: CA; COMPND 15 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RANBP2, NUP358; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS TYPE 1; SOURCE 10 ORGANISM_COMMON: HIV-1; SOURCE 11 ORGANISM_TAXID: 11698; SOURCE 12 GENE: GAG-POL; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS CYCLOPHILIN, ISOMERASE, CAPSID EXPDTA X-RAY DIFFRACTION AUTHOR A.J.PRICE,L.C.JAMES REVDAT 3 20-SEP-23 4LQW 1 SEQADV REVDAT 2 04-FEB-15 4LQW 1 AUTHOR REVDAT 1 14-AUG-13 4LQW 0 JRNL AUTH K.BICHEL,A.J.PRICE,T.SCHALLER,G.J.TOWERS,S.M.FREUND, JRNL AUTH 2 L.C.JAMES JRNL TITL HIV-1 CAPSID UNDERGOES COUPLED BINDING AND ISOMERIZATION BY JRNL TITL 2 THE NUCLEAR PORE PROTEIN NUP358. JRNL REF RETROVIROLOGY V. 10 81 2013 JRNL REFN ESSN 1742-4690 JRNL PMID 23902822 JRNL DOI 10.1186/1742-4690-10-81 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.04 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 94.0 REMARK 3 NUMBER OF REFLECTIONS : 43143 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.247 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2314 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3009 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 88.43 REMARK 3 BIN R VALUE (WORKING SET) : 0.2820 REMARK 3 BIN FREE R VALUE SET COUNT : 140 REMARK 3 BIN FREE R VALUE : 0.3380 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4853 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 372 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.06000 REMARK 3 B22 (A**2) : -0.01000 REMARK 3 B33 (A**2) : -0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.13000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.203 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.175 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.120 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.305 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.939 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.913 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5013 ; 0.004 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4794 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6783 ; 0.823 ; 1.944 REMARK 3 BOND ANGLES OTHERS (DEGREES): 11063 ; 0.660 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 634 ; 4.840 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 231 ;32.828 ;24.719 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 875 ;10.864 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;14.594 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 742 ; 0.048 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5716 ; 0.003 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1151 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2509 ; 0.885 ; 2.366 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2508 ; 0.885 ; 2.365 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3131 ; 1.525 ; 3.980 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 3132 ; 1.525 ; 3.986 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2504 ; 1.080 ; 2.562 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2505 ; 1.082 ; 2.566 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3646 ; 1.831 ; 4.230 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5927 ; 3.944 ;10.824 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5824 ; 3.776 ;10.693 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 173 REMARK 3 ORIGIN FOR THE GROUP (A): 18.7327 -9.8980 4.3665 REMARK 3 T TENSOR REMARK 3 T11: 0.0057 T22: 0.0119 REMARK 3 T33: 0.0241 T12: -0.0026 REMARK 3 T13: -0.0061 T23: -0.0064 REMARK 3 L TENSOR REMARK 3 L11: 0.4312 L22: 0.6734 REMARK 3 L33: 1.2017 L12: 0.1150 REMARK 3 L13: -0.2125 L23: 0.1829 REMARK 3 S TENSOR REMARK 3 S11: 0.0141 S12: 0.0062 S13: 0.0042 REMARK 3 S21: 0.0289 S22: -0.0638 S23: -0.0106 REMARK 3 S31: 0.0108 S32: -0.0897 S33: 0.0497 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 144 REMARK 3 ORIGIN FOR THE GROUP (A): 45.6821 8.2682 23.8954 REMARK 3 T TENSOR REMARK 3 T11: 0.0337 T22: 0.0089 REMARK 3 T33: 0.0228 T12: -0.0048 REMARK 3 T13: -0.0097 T23: 0.0073 REMARK 3 L TENSOR REMARK 3 L11: 0.7577 L22: 0.1439 REMARK 3 L33: 0.7573 L12: 0.1335 REMARK 3 L13: 0.3948 L23: 0.3173 REMARK 3 S TENSOR REMARK 3 S11: 0.0167 S12: -0.0278 S13: 0.0205 REMARK 3 S21: 0.0205 S22: -0.0090 S23: -0.0106 REMARK 3 S31: 0.0103 S32: -0.0130 S33: -0.0077 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 173 REMARK 3 ORIGIN FOR THE GROUP (A): 41.4290 -24.2978 57.6957 REMARK 3 T TENSOR REMARK 3 T11: 0.0017 T22: 0.0471 REMARK 3 T33: 0.0181 T12: 0.0073 REMARK 3 T13: 0.0013 T23: 0.0049 REMARK 3 L TENSOR REMARK 3 L11: 0.4290 L22: 0.3608 REMARK 3 L33: 1.5340 L12: -0.2547 REMARK 3 L13: -0.2723 L23: -0.1539 REMARK 3 S TENSOR REMARK 3 S11: 0.0120 S12: 0.0078 S13: 0.0068 REMARK 3 S21: -0.0222 S22: -0.0989 S23: -0.0040 REMARK 3 S31: 0.0169 S32: 0.1196 S33: 0.0869 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 1 C 144 REMARK 3 ORIGIN FOR THE GROUP (A): 16.4469 -5.4296 36.2381 REMARK 3 T TENSOR REMARK 3 T11: 0.0051 T22: 0.0311 REMARK 3 T33: 0.0242 T12: 0.0039 REMARK 3 T13: 0.0009 T23: -0.0144 REMARK 3 L TENSOR REMARK 3 L11: 0.5541 L22: 0.2719 REMARK 3 L33: 0.8131 L12: -0.0657 REMARK 3 L13: 0.4407 L23: -0.1478 REMARK 3 S TENSOR REMARK 3 S11: 0.0229 S12: 0.0463 S13: -0.0018 REMARK 3 S21: 0.0100 S22: -0.0593 S23: 0.0363 REMARK 3 S31: -0.0183 S32: 0.0207 S33: 0.0364 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4LQW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-JUL-13. REMARK 100 THE DEPOSITION ID IS D_1000080972. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-MAY-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.934 REMARK 200 MONOCHROMATOR : DIAMOND(111) + GE(220) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48326 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.953 REMARK 200 RESOLUTION RANGE LOW (A) : 33.040 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 88.4 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1AK4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.60 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 23 % V/V PEG 4000, 23 % GLYCEROL, 8.5 REMARK 280 % ISOPROPANOL, 85 MM HEPES PH 7.5, 20 MM SPERMINE REMARK 280 TETRAHYDROCHLORIDE, 100 MM GLYCINE, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 71.09000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 19.13000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 71.09000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 19.13000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -12 REMARK 465 ALA A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 MET B -12 REMARK 465 ALA B -11 REMARK 465 HIS B -10 REMARK 465 HIS B -9 REMARK 465 HIS B -8 REMARK 465 HIS B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 ASN D 5 REMARK 465 LEU D 6 REMARK 465 GLN D 7 REMARK 465 GLY D 8 REMARK 465 SER D 146 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 60 -75.62 -136.41 REMARK 500 ASN A 109 -102.44 -137.20 REMARK 500 PHE B 60 -77.73 -142.49 REMARK 500 ASN B 109 -105.18 -138.63 REMARK 500 LYS D 30 54.89 -107.43 REMARK 500 REMARK 500 REMARK: NULL DBREF 4LQW A -3 164 UNP P49792 RBP2_HUMAN 3057 3224 DBREF 4LQW B -3 164 UNP P49792 RBP2_HUMAN 3057 3224 DBREF 4LQW C 1 146 UNP P12497 POL_HV1N5 133 278 DBREF 4LQW D 1 146 UNP P12497 POL_HV1N5 133 278 SEQADV 4LQW MET A -12 UNP P49792 EXPRESSION TAG SEQADV 4LQW ALA A -11 UNP P49792 EXPRESSION TAG SEQADV 4LQW HIS A -10 UNP P49792 EXPRESSION TAG SEQADV 4LQW HIS A -9 UNP P49792 EXPRESSION TAG SEQADV 4LQW HIS A -8 UNP P49792 EXPRESSION TAG SEQADV 4LQW HIS A -7 UNP P49792 EXPRESSION TAG SEQADV 4LQW HIS A -6 UNP P49792 EXPRESSION TAG SEQADV 4LQW HIS A -5 UNP P49792 EXPRESSION TAG SEQADV 4LQW MET A -4 UNP P49792 EXPRESSION TAG SEQADV 4LQW MET B -12 UNP P49792 EXPRESSION TAG SEQADV 4LQW ALA B -11 UNP P49792 EXPRESSION TAG SEQADV 4LQW HIS B -10 UNP P49792 EXPRESSION TAG SEQADV 4LQW HIS B -9 UNP P49792 EXPRESSION TAG SEQADV 4LQW HIS B -8 UNP P49792 EXPRESSION TAG SEQADV 4LQW HIS B -7 UNP P49792 EXPRESSION TAG SEQADV 4LQW HIS B -6 UNP P49792 EXPRESSION TAG SEQADV 4LQW HIS B -5 UNP P49792 EXPRESSION TAG SEQADV 4LQW MET B -4 UNP P49792 EXPRESSION TAG SEQRES 1 A 177 MET ALA HIS HIS HIS HIS HIS HIS MET GLU LEU SER LYS SEQRES 2 A 177 GLU THR ASN PRO VAL VAL PHE PHE ASP VAL CYS ALA ASP SEQRES 3 A 177 GLY GLU PRO LEU GLY ARG ILE THR MET GLU LEU PHE SER SEQRES 4 A 177 ASN ILE VAL PRO ARG THR ALA GLU ASN PHE ARG ALA LEU SEQRES 5 A 177 CYS THR GLY GLU LYS GLY PHE GLY PHE LYS ASN SER ILE SEQRES 6 A 177 PHE HIS ARG VAL ILE PRO ASP PHE VAL CYS GLN GLY GLY SEQRES 7 A 177 ASP ILE THR LYS HIS ASP GLY THR GLY GLY GLN SER ILE SEQRES 8 A 177 TYR GLY ASP LYS PHE GLU ASP GLU ASN PHE ASP VAL LYS SEQRES 9 A 177 HIS THR GLY PRO GLY LEU LEU SER MET ALA ASN GLN GLY SEQRES 10 A 177 GLN ASN THR ASN ASN SER GLN PHE VAL ILE THR LEU LYS SEQRES 11 A 177 LYS ALA GLU HIS LEU ASP PHE LYS HIS VAL VAL PHE GLY SEQRES 12 A 177 PHE VAL LYS ASP GLY MET ASP THR VAL LYS LYS ILE GLU SEQRES 13 A 177 SER PHE GLY SER PRO LYS GLY SER VAL CYS ARG ARG ILE SEQRES 14 A 177 THR ILE THR GLU CYS GLY GLN ILE SEQRES 1 B 177 MET ALA HIS HIS HIS HIS HIS HIS MET GLU LEU SER LYS SEQRES 2 B 177 GLU THR ASN PRO VAL VAL PHE PHE ASP VAL CYS ALA ASP SEQRES 3 B 177 GLY GLU PRO LEU GLY ARG ILE THR MET GLU LEU PHE SER SEQRES 4 B 177 ASN ILE VAL PRO ARG THR ALA GLU ASN PHE ARG ALA LEU SEQRES 5 B 177 CYS THR GLY GLU LYS GLY PHE GLY PHE LYS ASN SER ILE SEQRES 6 B 177 PHE HIS ARG VAL ILE PRO ASP PHE VAL CYS GLN GLY GLY SEQRES 7 B 177 ASP ILE THR LYS HIS ASP GLY THR GLY GLY GLN SER ILE SEQRES 8 B 177 TYR GLY ASP LYS PHE GLU ASP GLU ASN PHE ASP VAL LYS SEQRES 9 B 177 HIS THR GLY PRO GLY LEU LEU SER MET ALA ASN GLN GLY SEQRES 10 B 177 GLN ASN THR ASN ASN SER GLN PHE VAL ILE THR LEU LYS SEQRES 11 B 177 LYS ALA GLU HIS LEU ASP PHE LYS HIS VAL VAL PHE GLY SEQRES 12 B 177 PHE VAL LYS ASP GLY MET ASP THR VAL LYS LYS ILE GLU SEQRES 13 B 177 SER PHE GLY SER PRO LYS GLY SER VAL CYS ARG ARG ILE SEQRES 14 B 177 THR ILE THR GLU CYS GLY GLN ILE SEQRES 1 C 146 PRO ILE VAL GLN ASN LEU GLN GLY GLN MET VAL HIS GLN SEQRES 2 C 146 ALA ILE SER PRO ARG THR LEU ASN ALA TRP VAL LYS VAL SEQRES 3 C 146 VAL GLU GLU LYS ALA PHE SER PRO GLU VAL ILE PRO MET SEQRES 4 C 146 PHE SER ALA LEU SER GLU GLY ALA THR PRO GLN ASP LEU SEQRES 5 C 146 ASN THR MET LEU ASN THR VAL GLY GLY HIS GLN ALA ALA SEQRES 6 C 146 MET GLN MET LEU LYS GLU THR ILE ASN GLU GLU ALA ALA SEQRES 7 C 146 GLU TRP ASP ARG LEU HIS PRO VAL HIS ALA GLY PRO ILE SEQRES 8 C 146 ALA PRO GLY GLN MET ARG GLU PRO ARG GLY SER ASP ILE SEQRES 9 C 146 ALA GLY THR THR SER THR LEU GLN GLU GLN ILE GLY TRP SEQRES 10 C 146 MET THR HIS ASN PRO PRO ILE PRO VAL GLY GLU ILE TYR SEQRES 11 C 146 LYS ARG TRP ILE ILE LEU GLY LEU ASN LYS ILE VAL ARG SEQRES 12 C 146 MET TYR SER SEQRES 1 D 146 PRO ILE VAL GLN ASN LEU GLN GLY GLN MET VAL HIS GLN SEQRES 2 D 146 ALA ILE SER PRO ARG THR LEU ASN ALA TRP VAL LYS VAL SEQRES 3 D 146 VAL GLU GLU LYS ALA PHE SER PRO GLU VAL ILE PRO MET SEQRES 4 D 146 PHE SER ALA LEU SER GLU GLY ALA THR PRO GLN ASP LEU SEQRES 5 D 146 ASN THR MET LEU ASN THR VAL GLY GLY HIS GLN ALA ALA SEQRES 6 D 146 MET GLN MET LEU LYS GLU THR ILE ASN GLU GLU ALA ALA SEQRES 7 D 146 GLU TRP ASP ARG LEU HIS PRO VAL HIS ALA GLY PRO ILE SEQRES 8 D 146 ALA PRO GLY GLN MET ARG GLU PRO ARG GLY SER ASP ILE SEQRES 9 D 146 ALA GLY THR THR SER THR LEU GLN GLU GLN ILE GLY TRP SEQRES 10 D 146 MET THR HIS ASN PRO PRO ILE PRO VAL GLY GLU ILE TYR SEQRES 11 D 146 LYS ARG TRP ILE ILE LEU GLY LEU ASN LYS ILE VAL ARG SEQRES 12 D 146 MET TYR SER FORMUL 5 HOH *372(H2 O) HELIX 1 1 VAL A 29 GLY A 42 1 14 HELIX 2 2 ALA A 119 ASP A 123 5 5 HELIX 3 3 GLY A 135 SER A 144 1 10 HELIX 4 4 VAL B 29 GLY B 42 1 14 HELIX 5 5 ALA B 119 ASP B 123 5 5 HELIX 6 6 GLY B 135 PHE B 145 1 11 HELIX 7 7 SER C 16 ALA C 31 1 16 HELIX 8 8 GLU C 35 LEU C 43 1 9 HELIX 9 9 THR C 48 VAL C 59 1 12 HELIX 10 10 HIS C 62 HIS C 84 1 23 HELIX 11 11 ARG C 100 ALA C 105 1 6 HELIX 12 12 THR C 110 THR C 119 1 10 HELIX 13 13 PRO C 125 SER C 146 1 22 HELIX 14 14 SER D 16 LYS D 30 1 15 HELIX 15 15 GLU D 35 LEU D 43 1 9 HELIX 16 16 THR D 48 VAL D 59 1 12 HELIX 17 17 HIS D 62 HIS D 84 1 23 HELIX 18 18 ARG D 100 ALA D 105 1 6 HELIX 19 19 THR D 110 HIS D 120 1 11 HELIX 20 20 PRO D 125 MET D 144 1 20 SHEET 1 A 8 ARG A 55 ILE A 57 0 SHEET 2 A 8 VAL A 61 GLY A 64 -1 O GLN A 63 N ARG A 55 SHEET 3 A 8 PHE A 112 THR A 115 -1 O ILE A 114 N CYS A 62 SHEET 4 A 8 LEU A 97 MET A 100 -1 N SER A 99 O VAL A 113 SHEET 5 A 8 VAL A 128 ASP A 134 -1 O GLY A 130 N LEU A 98 SHEET 6 A 8 GLU A 15 LEU A 24 -1 N THR A 21 O ASP A 134 SHEET 7 A 8 VAL A 5 ALA A 12 -1 N VAL A 6 O MET A 22 SHEET 8 A 8 ILE A 156 GLN A 163 -1 O GLU A 160 N ASP A 9 SHEET 1 B 8 ARG B 55 ILE B 57 0 SHEET 2 B 8 VAL B 61 GLY B 64 -1 O GLN B 63 N ARG B 55 SHEET 3 B 8 PHE B 112 THR B 115 -1 O ILE B 114 N CYS B 62 SHEET 4 B 8 LEU B 97 MET B 100 -1 N SER B 99 O VAL B 113 SHEET 5 B 8 VAL B 128 ASP B 134 -1 O GLY B 130 N LEU B 98 SHEET 6 B 8 GLU B 15 LEU B 24 -1 N THR B 21 O ASP B 134 SHEET 7 B 8 VAL B 5 ALA B 12 -1 N PHE B 8 O ILE B 20 SHEET 8 B 8 ILE B 156 GLN B 163 -1 O GLU B 160 N ASP B 9 SHEET 1 C 2 ILE C 2 GLN C 4 0 SHEET 2 C 2 MET C 10 HIS C 12 -1 O VAL C 11 N VAL C 3 SHEET 1 D 2 ILE D 2 VAL D 3 0 SHEET 2 D 2 VAL D 11 HIS D 12 -1 O VAL D 11 N VAL D 3 CISPEP 1 ALA C 31 PHE C 32 0 -5.37 CISPEP 2 GLY C 89 PRO C 90 0 5.60 CISPEP 3 ASN C 121 PRO C 122 0 -0.81 CISPEP 4 GLY D 89 PRO D 90 0 7.45 CISPEP 5 ASN D 121 PRO D 122 0 0.18 CRYST1 142.180 38.260 123.810 90.00 100.64 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007033 0.000000 0.001321 0.00000 SCALE2 0.000000 0.026137 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008218 0.00000