data_4LQZ # _entry.id 4LQZ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4LQZ pdb_00004lqz 10.2210/pdb4lqz/pdb RCSB RCSB080975 ? ? WWPDB D_1000080975 ? ? # _pdbx_database_related.db_name TargetTrack _pdbx_database_related.db_id JCSG-417490 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 4LQZ _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2013-07-19 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of a hypothetical protein (SAV1798) from Staphylococcus aureus subsp. aureus Mu50 at 1.92 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 4LQZ _cell.length_a 60.352 _cell.length_b 60.352 _cell.length_c 37.388 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 4 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4LQZ _symmetry.Int_Tables_number 75 _symmetry.space_group_name_H-M 'P 4' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Uncharacterized protein' 17508.178 1 ? ? 'UNP residues 34-160' ? 2 non-polymer syn 'PHOSPHATE ION' 94.971 1 ? ? ? ? 3 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 4 water nat water 18.015 82 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)GSDKIHHHHHHENLYFQGQRFEIQQHNETIGSIYFSADYAHIRGIEKGTAKYFIDKVGSKRYLFIEYIPDNVLNC KPDFWKTLKYKKDKVTYYVYLIENLDDEVFHLSALQD(MSE)NRIPIDIADDVAT(MSE)GKSPHQNDR(MSE)TLKLNK NN ; _entity_poly.pdbx_seq_one_letter_code_can ;MGSDKIHHHHHHENLYFQGQRFEIQQHNETIGSIYFSADYAHIRGIEKGTAKYFIDKVGSKRYLFIEYIPDNVLNCKPDF WKTLKYKKDKVTYYVYLIENLDDEVFHLSALQDMNRIPIDIADDVATMGKSPHQNDRMTLKLNKNN ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier JCSG-417490 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 GLY n 1 3 SER n 1 4 ASP n 1 5 LYS n 1 6 ILE n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 HIS n 1 12 HIS n 1 13 GLU n 1 14 ASN n 1 15 LEU n 1 16 TYR n 1 17 PHE n 1 18 GLN n 1 19 GLY n 1 20 GLN n 1 21 ARG n 1 22 PHE n 1 23 GLU n 1 24 ILE n 1 25 GLN n 1 26 GLN n 1 27 HIS n 1 28 ASN n 1 29 GLU n 1 30 THR n 1 31 ILE n 1 32 GLY n 1 33 SER n 1 34 ILE n 1 35 TYR n 1 36 PHE n 1 37 SER n 1 38 ALA n 1 39 ASP n 1 40 TYR n 1 41 ALA n 1 42 HIS n 1 43 ILE n 1 44 ARG n 1 45 GLY n 1 46 ILE n 1 47 GLU n 1 48 LYS n 1 49 GLY n 1 50 THR n 1 51 ALA n 1 52 LYS n 1 53 TYR n 1 54 PHE n 1 55 ILE n 1 56 ASP n 1 57 LYS n 1 58 VAL n 1 59 GLY n 1 60 SER n 1 61 LYS n 1 62 ARG n 1 63 TYR n 1 64 LEU n 1 65 PHE n 1 66 ILE n 1 67 GLU n 1 68 TYR n 1 69 ILE n 1 70 PRO n 1 71 ASP n 1 72 ASN n 1 73 VAL n 1 74 LEU n 1 75 ASN n 1 76 CYS n 1 77 LYS n 1 78 PRO n 1 79 ASP n 1 80 PHE n 1 81 TRP n 1 82 LYS n 1 83 THR n 1 84 LEU n 1 85 LYS n 1 86 TYR n 1 87 LYS n 1 88 LYS n 1 89 ASP n 1 90 LYS n 1 91 VAL n 1 92 THR n 1 93 TYR n 1 94 TYR n 1 95 VAL n 1 96 TYR n 1 97 LEU n 1 98 ILE n 1 99 GLU n 1 100 ASN n 1 101 LEU n 1 102 ASP n 1 103 ASP n 1 104 GLU n 1 105 VAL n 1 106 PHE n 1 107 HIS n 1 108 LEU n 1 109 SER n 1 110 ALA n 1 111 LEU n 1 112 GLN n 1 113 ASP n 1 114 MSE n 1 115 ASN n 1 116 ARG n 1 117 ILE n 1 118 PRO n 1 119 ILE n 1 120 ASP n 1 121 ILE n 1 122 ALA n 1 123 ASP n 1 124 ASP n 1 125 VAL n 1 126 ALA n 1 127 THR n 1 128 MSE n 1 129 GLY n 1 130 LYS n 1 131 SER n 1 132 PRO n 1 133 HIS n 1 134 GLN n 1 135 ASN n 1 136 ASP n 1 137 ARG n 1 138 MSE n 1 139 THR n 1 140 LEU n 1 141 LYS n 1 142 LEU n 1 143 ASN n 1 144 LYS n 1 145 ASN n 1 146 ASN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene SAV1798 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'Mu50 / ATCC 700699' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Staphylococcus aureus subsp. aureus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 158878 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain PB1 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name SpeedET _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q99T72_STAAM _struct_ref.pdbx_db_accession Q99T72 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;QRFEIQQHNETIGSIYFSADYAHIRGIEKGTAKYFIDKVGSKRYLFIEYIPDNVLNCKPDFWKTLKYKKDKVTYYVYLIE NLDDEVFHLSALQDMNRIPIDIADDVATMGKSPHQNDRMTLKLNKNN ; _struct_ref.pdbx_align_begin 34 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4LQZ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 20 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 146 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q99T72 _struct_ref_seq.db_align_beg 34 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 160 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 34 _struct_ref_seq.pdbx_auth_seq_align_end 160 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4LQZ MSE A 1 ? UNP Q99T72 ? ? 'expression tag' -18 1 1 4LQZ GLY A 2 ? UNP Q99T72 ? ? 'expression tag' -17 2 1 4LQZ SER A 3 ? UNP Q99T72 ? ? 'expression tag' -16 3 1 4LQZ ASP A 4 ? UNP Q99T72 ? ? 'expression tag' -15 4 1 4LQZ LYS A 5 ? UNP Q99T72 ? ? 'expression tag' -14 5 1 4LQZ ILE A 6 ? UNP Q99T72 ? ? 'expression tag' -13 6 1 4LQZ HIS A 7 ? UNP Q99T72 ? ? 'expression tag' -12 7 1 4LQZ HIS A 8 ? UNP Q99T72 ? ? 'expression tag' -11 8 1 4LQZ HIS A 9 ? UNP Q99T72 ? ? 'expression tag' -10 9 1 4LQZ HIS A 10 ? UNP Q99T72 ? ? 'expression tag' -9 10 1 4LQZ HIS A 11 ? UNP Q99T72 ? ? 'expression tag' -8 11 1 4LQZ HIS A 12 ? UNP Q99T72 ? ? 'expression tag' -7 12 1 4LQZ GLU A 13 ? UNP Q99T72 ? ? 'expression tag' -6 13 1 4LQZ ASN A 14 ? UNP Q99T72 ? ? 'expression tag' -5 14 1 4LQZ LEU A 15 ? UNP Q99T72 ? ? 'expression tag' -4 15 1 4LQZ TYR A 16 ? UNP Q99T72 ? ? 'expression tag' -3 16 1 4LQZ PHE A 17 ? UNP Q99T72 ? ? 'expression tag' -2 17 1 4LQZ GLN A 18 ? UNP Q99T72 ? ? 'expression tag' -1 18 1 4LQZ GLY A 19 ? UNP Q99T72 ? ? 'expression tag' 0 19 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PO4 non-polymer . 'PHOSPHATE ION' ? 'O4 P -3' 94.971 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 4LQZ # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 1.94 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 36.75 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 4.2 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.pdbx_details ;50.00% polyethylene glycol 200, 0.200M sodium chloride, 0.1M phosphate-citrate pH 4.2, NANODROP, VAPOR DIFFUSION, SITTING DROP, temperature 293K ; _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'DECTRIS PILATUS 6M' _diffrn_detector.details 'Flat mirror (vertical focusing); single crystal Si(111) bent monochromator (horizontal focusing)' _diffrn_detector.pdbx_collection_date 2013-06-06 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'single crystal Si(111) bent' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 0.97987 1.0 2 0.91837 1.0 3 0.9793 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline BL11-1 _diffrn_source.type 'SSRL BEAMLINE BL11-1' _diffrn_source.pdbx_wavelength_list 0.97987,0.91837,0.9793 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site SSRL # _reflns.entry_id 4LQZ _reflns.d_resolution_high 1.92 _reflns.d_resolution_low 42.675 _reflns.number_obs 10252 _reflns.pdbx_Rmerge_I_obs 0.067 _reflns.pdbx_netI_over_sigmaI 12.300 _reflns.percent_possible_obs 97.800 _reflns.B_iso_Wilson_estimate 26.209 _reflns.observed_criterion_sigma_I -3.000 _reflns.observed_criterion_sigma_F ? _reflns.number_all ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_redundancy 3.68 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_ordinal _reflns_shell.pdbx_diffrn_id 1.920 1.990 2962 ? 918 0.651 1.72 ? ? 3.23 ? ? 86.400 1 1 1.990 2.070 3959 ? 1040 0.401 2.8 ? ? ? ? ? 99.600 2 1 2.070 2.160 3690 ? 963 0.319 3.7 ? ? ? ? ? 99.600 3 1 2.160 2.280 4043 ? 1089 0.278 4.2 ? ? ? ? ? 99.300 4 1 2.280 2.420 3690 ? 1000 0.192 5.9 ? ? ? ? ? 98.500 5 1 2.420 2.600 3858 ? 1012 0.166 7.1 ? ? ? ? ? 99.700 6 1 2.600 2.870 3888 ? 1071 0.111 10.1 ? ? ? ? ? 99.200 7 1 2.870 3.280 3905 ? 1025 0.062 17.9 ? ? ? ? ? 99.500 8 1 3.280 4.130 3892 ? 1055 0.035 29.2 ? ? ? ? ? 99.200 9 1 4.130 42.675 3872 ? 1079 0.029 37.3 ? ? ? ? ? 97.600 10 1 # _refine.entry_id 4LQZ _refine.ls_d_res_high 1.9200 _refine.ls_d_res_low 42.675 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 97.8800 _refine.ls_number_reflns_obs 10255 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 2. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U FACTORS. 3. THE MAD PHASES WERE USED AS RESTRAINTS DURING REFINEMENT. 4. PHOSPHATE (PO4) AND CHLORIDE (CL) IONS ARE PRESENT IN CRYSTALLIZATION CONDITION. ; _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1967 _refine.ls_R_factor_R_work 0.1946 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2360 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 4.8200 _refine.ls_number_reflns_R_free 494 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 44.5391 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 0.8052 _refine.aniso_B[2][2] 0.8052 _refine.aniso_B[3][3] -1.6105 _refine.aniso_B[1][2] 0.0000 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9498 _refine.correlation_coeff_Fo_to_Fc_free 0.9258 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.solvent_model_details ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 122.450 _refine.B_iso_min 18.480 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.370 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 4LQZ _refine_analyze.Luzzati_coordinate_error_obs 0.340 _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1060 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 6 _refine_hist.number_atoms_solvent 82 _refine_hist.number_atoms_total 1148 _refine_hist.d_res_high 1.9200 _refine_hist.d_res_low 42.675 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id t_dihedral_angle_d 511 ? ? 2.000 SINUSOIDAL 'X-RAY DIFFRACTION' t_trig_c_planes 29 ? ? 2.000 HARMONIC 'X-RAY DIFFRACTION' t_gen_planes 163 ? ? 5.000 HARMONIC 'X-RAY DIFFRACTION' t_it 1106 ? ? 20.000 HARMONIC 'X-RAY DIFFRACTION' t_nbd ? ? ? ? ? 'X-RAY DIFFRACTION' t_improper_torsion ? ? ? ? ? 'X-RAY DIFFRACTION' t_pseud_angle ? ? ? ? ? 'X-RAY DIFFRACTION' t_chiral_improper_torsion 145 ? ? 5.000 SEMIHARMONIC 'X-RAY DIFFRACTION' t_sum_occupancies ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_distance ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_angle ? ? ? ? ? 'X-RAY DIFFRACTION' t_utility_torsion ? ? ? ? ? 'X-RAY DIFFRACTION' t_ideal_dist_contact 1271 ? ? 4.000 SEMIHARMONIC 'X-RAY DIFFRACTION' t_bond_d 1106 0.010 ? 2.000 HARMONIC 'X-RAY DIFFRACTION' t_angle_deg 1502 1.030 ? 2.000 HARMONIC 'X-RAY DIFFRACTION' t_omega_torsion ? 3.860 ? ? ? 'X-RAY DIFFRACTION' t_other_torsion ? 2.970 ? ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 1.9200 _refine_ls_shell.d_res_low 2.1500 _refine_ls_shell.pdbx_total_number_of_bins_used 5 _refine_ls_shell.percent_reflns_obs 97.8800 _refine_ls_shell.number_reflns_R_work 2668 _refine_ls_shell.R_factor_all 0.2137 _refine_ls_shell.R_factor_R_work 0.2120 _refine_ls_shell.R_factor_R_free 0.2474 _refine_ls_shell.percent_reflns_R_free 4.7100 _refine_ls_shell.number_reflns_R_free 132 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 2800 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.title 'Crystal structure of a DUF4909 family protein (SAV1798) from Staphylococcus aureus subsp. aureus Mu50 at 1.92 A resolution' _struct.entry_id 4LQZ _struct.pdbx_model_type_details ? _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? # _struct_keywords.text ;Streptavidin-like fold, PF16253 family, DUF4909, Structural Genomics, Joint Center for Structural Genomics, JCSG, Protein Structure Initiative, PSI-BIOLOGY, UNKNOWN FUNCTION ; _struct_keywords.pdbx_keywords 'STRUCTURAL GENOMICS, UNKNOWN FUNCTION' _struct_keywords.entry_id 4LQZ # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LYS A 77 ? LYS A 82 ? LYS A 91 LYS A 96 5 ? 6 HELX_P HELX_P2 2 ILE A 121 ? MSE A 128 ? ILE A 135 MSE A 142 5 ? 8 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A ASP 113 C ? ? ? 1_555 A MSE 114 N ? ? A ASP 127 A MSE 128 1_555 ? ? ? ? ? ? ? 1.355 ? ? covale2 covale both ? A MSE 114 C ? ? ? 1_555 A ASN 115 N ? ? A MSE 128 A ASN 129 1_555 ? ? ? ? ? ? ? 1.349 ? ? covale3 covale both ? A THR 127 C ? ? ? 1_555 A MSE 128 N ? ? A THR 141 A MSE 142 1_555 ? ? ? ? ? ? ? 1.342 ? ? covale4 covale both ? A MSE 128 C ? ? ? 1_555 A GLY 129 N ? ? A MSE 142 A GLY 143 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale5 covale both ? A ARG 137 C ? ? ? 1_555 A MSE 138 N ? ? A ARG 151 A MSE 152 1_555 ? ? ? ? ? ? ? 1.308 ? ? covale6 covale both ? A MSE 138 C ? ? ? 1_555 A THR 139 N ? ? A MSE 152 A THR 153 1_555 ? ? ? ? ? ? ? 1.342 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 10 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel A 7 8 ? anti-parallel A 8 9 ? anti-parallel A 9 10 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS A 85 ? LYS A 88 ? LYS A 99 LYS A 102 A 2 VAL A 91 ? ASN A 100 ? VAL A 105 ASN A 114 A 3 VAL A 105 ? ALA A 110 ? VAL A 119 ALA A 124 A 4 MSE A 138 ? LEU A 142 ? MSE A 152 LEU A 156 A 5 ARG A 21 ? GLN A 26 ? ARG A 35 GLN A 40 A 6 GLU A 29 ? PHE A 36 ? GLU A 43 PHE A 50 A 7 TYR A 40 ? ARG A 44 ? TYR A 54 ARG A 58 A 8 LYS A 48 ? VAL A 58 ? LYS A 62 VAL A 72 A 9 LYS A 61 ? ILE A 66 ? LYS A 75 ILE A 80 A 10 VAL A 91 ? ASN A 100 ? VAL A 105 ASN A 114 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N TYR A 86 ? N TYR A 100 O TYR A 93 ? O TYR A 107 A 2 3 N LEU A 97 ? N LEU A 111 O SER A 109 ? O SER A 123 A 3 4 N PHE A 106 ? N PHE A 120 O LEU A 140 ? O LEU A 154 A 4 5 O THR A 139 ? O THR A 153 N GLN A 25 ? N GLN A 39 A 5 6 N ILE A 24 ? N ILE A 38 O GLY A 32 ? O GLY A 46 A 6 7 N TYR A 35 ? N TYR A 49 O HIS A 42 ? O HIS A 56 A 7 8 N ALA A 41 ? N ALA A 55 O ALA A 51 ? O ALA A 65 A 8 9 N PHE A 54 ? N PHE A 68 O PHE A 65 ? O PHE A 79 A 9 10 N ILE A 66 ? N ILE A 80 O TYR A 94 ? O TYR A 108 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A PO4 201 ? 7 'BINDING SITE FOR RESIDUE PO4 A 201' AC2 Software A CL 202 ? 2 'BINDING SITE FOR RESIDUE CL A 202' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 SER A 33 ? SER A 47 . ? 1_554 ? 2 AC1 7 ARG A 44 ? ARG A 58 . ? 1_554 ? 3 AC1 7 ARG A 116 ? ARG A 130 . ? 1_555 ? 4 AC1 7 ILE A 119 ? ILE A 133 . ? 1_555 ? 5 AC1 7 ASP A 120 ? ASP A 134 . ? 1_555 ? 6 AC1 7 ILE A 121 ? ILE A 135 . ? 1_555 ? 7 AC1 7 ASP A 124 ? ASP A 138 . ? 1_555 ? 8 AC2 2 TYR A 86 ? TYR A 100 . ? 1_555 ? 9 AC2 2 ALA A 122 ? ALA A 136 . ? 1_555 ? # _atom_sites.entry_id 4LQZ _atom_sites.fract_transf_matrix[1][1] 0.016569 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016569 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.026747 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C CL N O P S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 -18 ? ? ? A . n A 1 2 GLY 2 -17 ? ? ? A . n A 1 3 SER 3 -16 ? ? ? A . n A 1 4 ASP 4 -15 ? ? ? A . n A 1 5 LYS 5 -14 ? ? ? A . n A 1 6 ILE 6 -13 ? ? ? A . n A 1 7 HIS 7 -12 ? ? ? A . n A 1 8 HIS 8 -11 ? ? ? A . n A 1 9 HIS 9 -10 ? ? ? A . n A 1 10 HIS 10 -9 ? ? ? A . n A 1 11 HIS 11 -8 ? ? ? A . n A 1 12 HIS 12 -7 ? ? ? A . n A 1 13 GLU 13 -6 -6 GLU GLU A . n A 1 14 ASN 14 -5 -5 ASN ASN A . n A 1 15 LEU 15 -4 -4 LEU LEU A . n A 1 16 TYR 16 -3 -3 TYR TYR A . n A 1 17 PHE 17 -2 -2 PHE PHE A . n A 1 18 GLN 18 -1 -1 GLN GLN A . n A 1 19 GLY 19 0 0 GLY GLY A . n A 1 20 GLN 20 34 34 GLN GLN A . n A 1 21 ARG 21 35 35 ARG ARG A . n A 1 22 PHE 22 36 36 PHE PHE A . n A 1 23 GLU 23 37 37 GLU GLU A . n A 1 24 ILE 24 38 38 ILE ILE A . n A 1 25 GLN 25 39 39 GLN GLN A . n A 1 26 GLN 26 40 40 GLN GLN A . n A 1 27 HIS 27 41 41 HIS HIS A . n A 1 28 ASN 28 42 42 ASN ASN A . n A 1 29 GLU 29 43 43 GLU GLU A . n A 1 30 THR 30 44 44 THR THR A . n A 1 31 ILE 31 45 45 ILE ILE A . n A 1 32 GLY 32 46 46 GLY GLY A . n A 1 33 SER 33 47 47 SER SER A . n A 1 34 ILE 34 48 48 ILE ILE A . n A 1 35 TYR 35 49 49 TYR TYR A . n A 1 36 PHE 36 50 50 PHE PHE A . n A 1 37 SER 37 51 51 SER SER A . n A 1 38 ALA 38 52 52 ALA ALA A . n A 1 39 ASP 39 53 53 ASP ASP A . n A 1 40 TYR 40 54 54 TYR TYR A . n A 1 41 ALA 41 55 55 ALA ALA A . n A 1 42 HIS 42 56 56 HIS HIS A . n A 1 43 ILE 43 57 57 ILE ILE A . n A 1 44 ARG 44 58 58 ARG ARG A . n A 1 45 GLY 45 59 59 GLY GLY A . n A 1 46 ILE 46 60 60 ILE ILE A . n A 1 47 GLU 47 61 61 GLU GLU A . n A 1 48 LYS 48 62 62 LYS LYS A . n A 1 49 GLY 49 63 63 GLY GLY A . n A 1 50 THR 50 64 64 THR THR A . n A 1 51 ALA 51 65 65 ALA ALA A . n A 1 52 LYS 52 66 66 LYS LYS A . n A 1 53 TYR 53 67 67 TYR TYR A . n A 1 54 PHE 54 68 68 PHE PHE A . n A 1 55 ILE 55 69 69 ILE ILE A . n A 1 56 ASP 56 70 70 ASP ASP A . n A 1 57 LYS 57 71 71 LYS LYS A . n A 1 58 VAL 58 72 72 VAL VAL A . n A 1 59 GLY 59 73 73 GLY GLY A . n A 1 60 SER 60 74 74 SER SER A . n A 1 61 LYS 61 75 75 LYS LYS A . n A 1 62 ARG 62 76 76 ARG ARG A . n A 1 63 TYR 63 77 77 TYR TYR A . n A 1 64 LEU 64 78 78 LEU LEU A . n A 1 65 PHE 65 79 79 PHE PHE A . n A 1 66 ILE 66 80 80 ILE ILE A . n A 1 67 GLU 67 81 81 GLU GLU A . n A 1 68 TYR 68 82 82 TYR TYR A . n A 1 69 ILE 69 83 83 ILE ILE A . n A 1 70 PRO 70 84 84 PRO PRO A . n A 1 71 ASP 71 85 85 ASP ASP A . n A 1 72 ASN 72 86 86 ASN ASN A . n A 1 73 VAL 73 87 87 VAL VAL A . n A 1 74 LEU 74 88 88 LEU LEU A . n A 1 75 ASN 75 89 89 ASN ASN A . n A 1 76 CYS 76 90 90 CYS CYS A . n A 1 77 LYS 77 91 91 LYS LYS A . n A 1 78 PRO 78 92 92 PRO PRO A . n A 1 79 ASP 79 93 93 ASP ASP A . n A 1 80 PHE 80 94 94 PHE PHE A . n A 1 81 TRP 81 95 95 TRP TRP A . n A 1 82 LYS 82 96 96 LYS LYS A . n A 1 83 THR 83 97 97 THR THR A . n A 1 84 LEU 84 98 98 LEU LEU A . n A 1 85 LYS 85 99 99 LYS LYS A . n A 1 86 TYR 86 100 100 TYR TYR A . n A 1 87 LYS 87 101 101 LYS LYS A . n A 1 88 LYS 88 102 102 LYS LYS A . n A 1 89 ASP 89 103 103 ASP ASP A . n A 1 90 LYS 90 104 104 LYS LYS A . n A 1 91 VAL 91 105 105 VAL VAL A . n A 1 92 THR 92 106 106 THR THR A . n A 1 93 TYR 93 107 107 TYR TYR A . n A 1 94 TYR 94 108 108 TYR TYR A . n A 1 95 VAL 95 109 109 VAL VAL A . n A 1 96 TYR 96 110 110 TYR TYR A . n A 1 97 LEU 97 111 111 LEU LEU A . n A 1 98 ILE 98 112 112 ILE ILE A . n A 1 99 GLU 99 113 113 GLU GLU A . n A 1 100 ASN 100 114 114 ASN ASN A . n A 1 101 LEU 101 115 115 LEU LEU A . n A 1 102 ASP 102 116 116 ASP ASP A . n A 1 103 ASP 103 117 117 ASP ASP A . n A 1 104 GLU 104 118 118 GLU GLU A . n A 1 105 VAL 105 119 119 VAL VAL A . n A 1 106 PHE 106 120 120 PHE PHE A . n A 1 107 HIS 107 121 121 HIS HIS A . n A 1 108 LEU 108 122 122 LEU LEU A . n A 1 109 SER 109 123 123 SER SER A . n A 1 110 ALA 110 124 124 ALA ALA A . n A 1 111 LEU 111 125 125 LEU LEU A . n A 1 112 GLN 112 126 126 GLN GLN A . n A 1 113 ASP 113 127 127 ASP ASP A . n A 1 114 MSE 114 128 128 MSE MSE A . n A 1 115 ASN 115 129 129 ASN ASN A . n A 1 116 ARG 116 130 130 ARG ARG A . n A 1 117 ILE 117 131 131 ILE ILE A . n A 1 118 PRO 118 132 132 PRO PRO A . n A 1 119 ILE 119 133 133 ILE ILE A . n A 1 120 ASP 120 134 134 ASP ASP A . n A 1 121 ILE 121 135 135 ILE ILE A . n A 1 122 ALA 122 136 136 ALA ALA A . n A 1 123 ASP 123 137 137 ASP ASP A . n A 1 124 ASP 124 138 138 ASP ASP A . n A 1 125 VAL 125 139 139 VAL VAL A . n A 1 126 ALA 126 140 140 ALA ALA A . n A 1 127 THR 127 141 141 THR THR A . n A 1 128 MSE 128 142 142 MSE MSE A . n A 1 129 GLY 129 143 143 GLY GLY A . n A 1 130 LYS 130 144 144 LYS LYS A . n A 1 131 SER 131 145 145 SER SER A . n A 1 132 PRO 132 146 146 PRO PRO A . n A 1 133 HIS 133 147 147 HIS HIS A . n A 1 134 GLN 134 148 148 GLN GLN A . n A 1 135 ASN 135 149 149 ASN ASN A . n A 1 136 ASP 136 150 150 ASP ASP A . n A 1 137 ARG 137 151 151 ARG ARG A . n A 1 138 MSE 138 152 152 MSE MSE A . n A 1 139 THR 139 153 153 THR THR A . n A 1 140 LEU 140 154 154 LEU LEU A . n A 1 141 LYS 141 155 155 LYS LYS A . n A 1 142 LEU 142 156 156 LEU LEU A . n A 1 143 ASN 143 157 157 ASN ASN A . n A 1 144 LYS 144 158 ? ? ? A . n A 1 145 ASN 145 159 ? ? ? A . n A 1 146 ASN 146 160 ? ? ? A . n # _pdbx_SG_project.project_name PSI:Biology _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 1 201 161 PO4 PO4 A . C 3 CL 1 202 162 CL CL A . D 4 HOH 1 301 163 HOH HOH A . D 4 HOH 2 302 164 HOH HOH A . D 4 HOH 3 303 165 HOH HOH A . D 4 HOH 4 304 166 HOH HOH A . D 4 HOH 5 305 167 HOH HOH A . D 4 HOH 6 306 168 HOH HOH A . D 4 HOH 7 307 169 HOH HOH A . D 4 HOH 8 308 170 HOH HOH A . D 4 HOH 9 309 171 HOH HOH A . D 4 HOH 10 310 172 HOH HOH A . D 4 HOH 11 311 173 HOH HOH A . D 4 HOH 12 312 174 HOH HOH A . D 4 HOH 13 313 175 HOH HOH A . D 4 HOH 14 314 176 HOH HOH A . D 4 HOH 15 315 177 HOH HOH A . D 4 HOH 16 316 178 HOH HOH A . D 4 HOH 17 317 179 HOH HOH A . D 4 HOH 18 318 180 HOH HOH A . D 4 HOH 19 319 181 HOH HOH A . D 4 HOH 20 320 182 HOH HOH A . D 4 HOH 21 321 183 HOH HOH A . D 4 HOH 22 322 184 HOH HOH A . D 4 HOH 23 323 185 HOH HOH A . D 4 HOH 24 324 186 HOH HOH A . D 4 HOH 25 325 187 HOH HOH A . D 4 HOH 26 326 188 HOH HOH A . D 4 HOH 27 327 189 HOH HOH A . D 4 HOH 28 328 190 HOH HOH A . D 4 HOH 29 329 191 HOH HOH A . D 4 HOH 30 330 192 HOH HOH A . D 4 HOH 31 331 193 HOH HOH A . D 4 HOH 32 332 194 HOH HOH A . D 4 HOH 33 333 195 HOH HOH A . D 4 HOH 34 334 196 HOH HOH A . D 4 HOH 35 335 197 HOH HOH A . D 4 HOH 36 336 198 HOH HOH A . D 4 HOH 37 337 199 HOH HOH A . D 4 HOH 38 338 200 HOH HOH A . D 4 HOH 39 339 201 HOH HOH A . D 4 HOH 40 340 202 HOH HOH A . D 4 HOH 41 341 203 HOH HOH A . D 4 HOH 42 342 204 HOH HOH A . D 4 HOH 43 343 205 HOH HOH A . D 4 HOH 44 344 206 HOH HOH A . D 4 HOH 45 345 207 HOH HOH A . D 4 HOH 46 346 208 HOH HOH A . D 4 HOH 47 347 209 HOH HOH A . D 4 HOH 48 348 210 HOH HOH A . D 4 HOH 49 349 211 HOH HOH A . D 4 HOH 50 350 212 HOH HOH A . D 4 HOH 51 351 213 HOH HOH A . D 4 HOH 52 352 214 HOH HOH A . D 4 HOH 53 353 215 HOH HOH A . D 4 HOH 54 354 216 HOH HOH A . D 4 HOH 55 355 217 HOH HOH A . D 4 HOH 56 356 218 HOH HOH A . D 4 HOH 57 357 219 HOH HOH A . D 4 HOH 58 358 220 HOH HOH A . D 4 HOH 59 359 221 HOH HOH A . D 4 HOH 60 360 222 HOH HOH A . D 4 HOH 61 361 223 HOH HOH A . D 4 HOH 62 362 224 HOH HOH A . D 4 HOH 63 363 225 HOH HOH A . D 4 HOH 64 364 226 HOH HOH A . D 4 HOH 65 365 227 HOH HOH A . D 4 HOH 66 366 228 HOH HOH A . D 4 HOH 67 367 229 HOH HOH A . D 4 HOH 68 368 230 HOH HOH A . D 4 HOH 69 369 231 HOH HOH A . D 4 HOH 70 370 232 HOH HOH A . D 4 HOH 71 371 233 HOH HOH A . D 4 HOH 72 372 234 HOH HOH A . D 4 HOH 73 373 235 HOH HOH A . D 4 HOH 74 374 236 HOH HOH A . D 4 HOH 75 375 237 HOH HOH A . D 4 HOH 76 376 238 HOH HOH A . D 4 HOH 77 377 239 HOH HOH A . D 4 HOH 78 378 240 HOH HOH A . D 4 HOH 79 379 241 HOH HOH A . D 4 HOH 80 380 242 HOH HOH A . D 4 HOH 81 381 243 HOH HOH A . D 4 HOH 82 382 244 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 114 A MSE 128 ? MET SELENOMETHIONINE 2 A MSE 128 A MSE 142 ? MET SELENOMETHIONINE 3 A MSE 138 A MSE 152 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-08-07 2 'Structure model' 1 1 2014-12-24 3 'Structure model' 1 2 2017-11-15 4 'Structure model' 1 3 2023-02-01 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Structure summary' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' database_2 3 4 'Structure model' struct_conn 4 4 'Structure model' struct_ref_seq_dif 5 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 4 'Structure model' '_struct_ref_seq_dif.details' 5 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 6 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 7 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_refine_tls.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls.id 1 _pdbx_refine_tls.details ? _pdbx_refine_tls.method refined _pdbx_refine_tls.origin_x 17.7342 _pdbx_refine_tls.origin_y 11.4801 _pdbx_refine_tls.origin_z 6.5624 _pdbx_refine_tls.T[1][1] -0.2235 _pdbx_refine_tls.T[2][2] -0.2084 _pdbx_refine_tls.T[3][3] 0.1130 _pdbx_refine_tls.T[1][2] 0.0188 _pdbx_refine_tls.T[1][3] -0.0150 _pdbx_refine_tls.T[2][3] -0.0458 _pdbx_refine_tls.L[1][1] 5.1706 _pdbx_refine_tls.L[2][2] 6.4684 _pdbx_refine_tls.L[3][3] 1.5493 _pdbx_refine_tls.L[1][2] -2.9104 _pdbx_refine_tls.L[1][3] 1.4095 _pdbx_refine_tls.L[2][3] -0.2020 _pdbx_refine_tls.S[1][1] 0.2341 _pdbx_refine_tls.S[2][2] -0.1820 _pdbx_refine_tls.S[3][3] -0.0521 _pdbx_refine_tls.S[1][2] 0.2902 _pdbx_refine_tls.S[1][3] -0.5442 _pdbx_refine_tls.S[2][3] 0.5442 _pdbx_refine_tls.S[2][1] -0.3971 _pdbx_refine_tls.S[3][1] -0.0054 _pdbx_refine_tls.S[3][2] 0.1973 # _pdbx_refine_tls_group.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine_tls_group.id 1 _pdbx_refine_tls_group.refine_tls_id 1 _pdbx_refine_tls_group.beg_auth_asym_id A _pdbx_refine_tls_group.beg_auth_seq_id -6 _pdbx_refine_tls_group.end_auth_asym_id A _pdbx_refine_tls_group.end_auth_seq_id 157 _pdbx_refine_tls_group.selection_details '{ A|-6 - A|157 }' _pdbx_refine_tls_group.beg_label_asym_id ? _pdbx_refine_tls_group.beg_label_seq_id ? _pdbx_refine_tls_group.end_label_asym_id ? _pdbx_refine_tls_group.end_label_seq_id ? _pdbx_refine_tls_group.selection ? # _phasing.method MAD # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 2 PDB_EXTRACT 3.10 'June 10, 2010' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 SHELX . ? package 'George M. Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 4 SHARP . ? package 'Eric de La Fortelle' sharp-develop@globalphasing.com phasing http://www.globalphasing.com/sharp/ ? ? 5 XSCALE 'July 4, 2012' ? package 'Wolfgang Kabsch' ? 'data scaling' http://www.mpimf-heidelberg.mpg.de/~kabsch/xds/html_doc/xscale_program.html ? ? 6 BUSTER-TNT 2.10.0 ? program 'Gerard Bricogne' buster-develop@GlobalPhasing.com refinement http://www.globalphasing.com/buster/ ? ? 7 XDS . ? ? ? ? 'data reduction' ? ? ? 8 SHELXD . ? ? ? ? phasing ? ? ? 9 BUSTER 2.10.0 ? ? ? ? refinement ? ? ? # _pdbx_entry_details.entry_id 4LQZ _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details 'THE CONSTRUCT (34-160) WAS EXPRESSED WITH A PURIFICATION TAG MGSDKIHHHHHHENLYFQG.' _pdbx_entry_details.has_ligand_of_interest ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 42 ? ? 59.95 14.27 2 1 SER A 51 ? ? -98.03 -154.74 3 1 ASP A 103 ? ? 62.50 -119.43 4 1 ASP A 116 ? ? -162.74 20.46 5 1 GLU A 118 ? ? -125.16 -52.31 6 1 ASN A 129 ? ? -94.90 48.90 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU -6 ? CG ? A GLU 13 CG 2 1 Y 1 A GLU -6 ? CD ? A GLU 13 CD 3 1 Y 1 A GLU -6 ? OE1 ? A GLU 13 OE1 4 1 Y 1 A GLU -6 ? OE2 ? A GLU 13 OE2 5 1 Y 1 A LEU -4 ? CG ? A LEU 15 CG 6 1 Y 1 A LEU -4 ? CD1 ? A LEU 15 CD1 7 1 Y 1 A LEU -4 ? CD2 ? A LEU 15 CD2 8 1 Y 1 A GLU 43 ? CG ? A GLU 29 CG 9 1 Y 1 A GLU 43 ? CD ? A GLU 29 CD 10 1 Y 1 A GLU 43 ? OE1 ? A GLU 29 OE1 11 1 Y 1 A GLU 43 ? OE2 ? A GLU 29 OE2 12 1 Y 1 A LYS 101 ? CG ? A LYS 87 CG 13 1 Y 1 A LYS 101 ? CD ? A LYS 87 CD 14 1 Y 1 A LYS 101 ? CE ? A LYS 87 CE 15 1 Y 1 A LYS 101 ? NZ ? A LYS 87 NZ 16 1 Y 1 A LYS 104 ? CG ? A LYS 90 CG 17 1 Y 1 A LYS 104 ? CD ? A LYS 90 CD 18 1 Y 1 A LYS 104 ? CE ? A LYS 90 CE 19 1 Y 1 A LYS 104 ? NZ ? A LYS 90 NZ 20 1 Y 1 A GLU 118 ? CG ? A GLU 104 CG 21 1 Y 1 A GLU 118 ? CD ? A GLU 104 CD 22 1 Y 1 A GLU 118 ? OE1 ? A GLU 104 OE1 23 1 Y 1 A GLU 118 ? OE2 ? A GLU 104 OE2 24 1 Y 1 A GLN 126 ? CG ? A GLN 112 CG 25 1 Y 1 A GLN 126 ? CD ? A GLN 112 CD 26 1 Y 1 A GLN 126 ? OE1 ? A GLN 112 OE1 27 1 Y 1 A GLN 126 ? NE2 ? A GLN 112 NE2 28 1 Y 1 A ASN 129 ? CG ? A ASN 115 CG 29 1 Y 1 A ASN 129 ? OD1 ? A ASN 115 OD1 30 1 Y 1 A ASN 129 ? ND2 ? A ASN 115 ND2 31 1 Y 1 A ILE 135 ? CG1 ? A ILE 121 CG1 32 1 Y 1 A ILE 135 ? CG2 ? A ILE 121 CG2 33 1 Y 1 A ILE 135 ? CD1 ? A ILE 121 CD1 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE -18 ? A MSE 1 2 1 Y 1 A GLY -17 ? A GLY 2 3 1 Y 1 A SER -16 ? A SER 3 4 1 Y 1 A ASP -15 ? A ASP 4 5 1 Y 1 A LYS -14 ? A LYS 5 6 1 Y 1 A ILE -13 ? A ILE 6 7 1 Y 1 A HIS -12 ? A HIS 7 8 1 Y 1 A HIS -11 ? A HIS 8 9 1 Y 1 A HIS -10 ? A HIS 9 10 1 Y 1 A HIS -9 ? A HIS 10 11 1 Y 1 A HIS -8 ? A HIS 11 12 1 Y 1 A HIS -7 ? A HIS 12 13 1 Y 1 A LYS 158 ? A LYS 144 14 1 Y 1 A ASN 159 ? A ASN 145 15 1 Y 1 A ASN 160 ? A ASN 146 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'PHOSPHATE ION' PO4 3 'CHLORIDE ION' CL 4 water HOH #