HEADER HYDROLASE 22-JUL-13 4LS9 TITLE STRUCTURE OF MYCOBACTERIAL NRNA HOMOLOG REVEALS MULTIFUNCTIONAL TITLE 2 NUCLEASE ACTIVITIES COMPND MOL_ID: 1; COMPND 2 MOLECULE: DHH FAMILY PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM SMEGMATIS; SOURCE 3 ORGANISM_TAXID: 246196; SOURCE 4 STRAIN: MC(2)155; SOURCE 5 GENE: MSMEG_2630; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS DHH-FAMILY, NANORNASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR D.KUMAR,R.SRIVASTAV,A.GROVER,B.A.MANJASETTY,R.SHARMA,B.TANEJA REVDAT 1 16-JUL-14 4LS9 0 JRNL AUTH R.SRIVASTAV,D.KUMAR,A.GROVER,A.SINGH,B.A.MANJASETTY, JRNL AUTH 2 R.SHARMA,B.TANEJA JRNL TITL UNIQUE SUBUNIT PACKING IN MYCOBACTERIAL NANORNASE LEADS TO JRNL TITL 2 ALTERNATE SUBSTRATE RECOGNITIONS IN DHH PHOSPHODIESTERASES JRNL REF NUCLEIC ACIDS RES. V. 42 7894 2014 JRNL REFN ISSN 0305-1048 JRNL PMID 24878921 JRNL DOI 10.1093/NAR/GKU425 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER 2.10.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SHARFF,SMART,VONRHEIN, REMARK 3 : WOMACK,MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 34.59 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 32831 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 1666 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 16 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.27 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.51 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2988 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.1867 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2825 REMARK 3 BIN R VALUE (WORKING SET) : 0.1834 REMARK 3 BIN FREE R VALUE : 0.2434 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.46 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 163 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4708 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 268 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 31.73 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.83 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -8.92220 REMARK 3 B22 (A**2) : 6.77210 REMARK 3 B33 (A**2) : 2.15000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 5.03700 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.286 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : 0.247 REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : 0.191 REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : 0.245 REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : 0.194 REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.921 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.883 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 4893 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 6696 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1629 ; 2.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 98 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 755 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 4893 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : 1 ; 5.000 ; SEMIHARMONIC REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 652 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 5885 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.13 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 2.64 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 17.81 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: {A|22 - 189} REMARK 3 ORIGIN FOR THE GROUP (A): -6.8405 7.7300 49.2651 REMARK 3 T TENSOR REMARK 3 T11: -0.1007 T22: -0.0951 REMARK 3 T33: -0.0007 T12: 0.0174 REMARK 3 T13: -0.0495 T23: -0.0098 REMARK 3 L TENSOR REMARK 3 L11: 1.4481 L22: 3.1334 REMARK 3 L33: 1.2343 L12: 1.0585 REMARK 3 L13: 0.3340 L23: 0.1948 REMARK 3 S TENSOR REMARK 3 S11: -0.0662 S12: -0.0357 S13: 0.2272 REMARK 3 S21: -0.0919 S22: -0.0479 S23: 0.0938 REMARK 3 S31: -0.1001 S32: 0.0235 S33: 0.1142 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: {A|190 - 240} REMARK 3 ORIGIN FOR THE GROUP (A): -19.1652 -13.0269 52.1721 REMARK 3 T TENSOR REMARK 3 T11: -0.0630 T22: -0.0506 REMARK 3 T33: 0.0404 T12: 0.0003 REMARK 3 T13: 0.0018 T23: -0.0418 REMARK 3 L TENSOR REMARK 3 L11: 1.2824 L22: 1.8835 REMARK 3 L33: 0.7751 L12: -0.0147 REMARK 3 L13: -0.0581 L23: -0.7911 REMARK 3 S TENSOR REMARK 3 S11: 0.0214 S12: -0.1703 S13: 0.0274 REMARK 3 S21: 0.1058 S22: 0.0647 S23: 0.2508 REMARK 3 S31: 0.0182 S32: -0.1365 S33: -0.0861 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: {A|241 - 340} REMARK 3 ORIGIN FOR THE GROUP (A): -37.9815 -10.1303 44.8430 REMARK 3 T TENSOR REMARK 3 T11: -0.1066 T22: 0.0827 REMARK 3 T33: 0.2471 T12: 0.0128 REMARK 3 T13: 0.0261 T23: 0.0452 REMARK 3 L TENSOR REMARK 3 L11: 5.0920 L22: 5.0880 REMARK 3 L33: 5.0062 L12: -2.5953 REMARK 3 L13: 2.5271 L23: -2.2696 REMARK 3 S TENSOR REMARK 3 S11: 0.1485 S12: 0.2022 S13: 0.2812 REMARK 3 S21: -0.4079 S22: -0.0867 S23: 0.5319 REMARK 3 S31: 0.1145 S32: -0.1663 S33: -0.0618 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: {B|22 - 189} REMARK 3 ORIGIN FOR THE GROUP (A): -10.9922 -37.2821 38.8591 REMARK 3 T TENSOR REMARK 3 T11: 0.0305 T22: -0.1325 REMARK 3 T33: 0.0128 T12: 0.0466 REMARK 3 T13: -0.1417 T23: -0.0167 REMARK 3 L TENSOR REMARK 3 L11: 1.3895 L22: 3.5562 REMARK 3 L33: 2.4149 L12: 0.4371 REMARK 3 L13: 0.7619 L23: 1.2286 REMARK 3 S TENSOR REMARK 3 S11: 0.2378 S12: 0.1158 S13: -0.1955 REMARK 3 S21: 0.1616 S22: 0.0305 S23: -0.1998 REMARK 3 S31: 0.5964 S32: 0.1380 S33: -0.2682 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: {B|190 - 240} REMARK 3 ORIGIN FOR THE GROUP (A): -20.0923 -20.2060 48.6572 REMARK 3 T TENSOR REMARK 3 T11: -0.1035 T22: -0.0660 REMARK 3 T33: 0.0736 T12: 0.0038 REMARK 3 T13: -0.0743 T23: 0.0038 REMARK 3 L TENSOR REMARK 3 L11: 1.2214 L22: 2.0069 REMARK 3 L33: 2.0391 L12: -0.5864 REMARK 3 L13: -0.2341 L23: 0.3707 REMARK 3 S TENSOR REMARK 3 S11: -0.0753 S12: -0.1647 S13: -0.1484 REMARK 3 S21: -0.0439 S22: 0.1127 S23: 0.1995 REMARK 3 S31: 0.1618 S32: -0.1561 S33: -0.0374 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: {B|241 - 340} REMARK 3 ORIGIN FOR THE GROUP (A): -21.7147 -26.4660 68.3758 REMARK 3 T TENSOR REMARK 3 T11: -0.0908 T22: 0.1838 REMARK 3 T33: 0.0922 T12: 0.0387 REMARK 3 T13: 0.1077 T23: 0.0362 REMARK 3 L TENSOR REMARK 3 L11: 1.6735 L22: 5.0664 REMARK 3 L33: 1.7190 L12: -1.1140 REMARK 3 L13: 1.0588 L23: -0.8043 REMARK 3 S TENSOR REMARK 3 S11: -0.1734 S12: -0.3642 S13: -0.1842 REMARK 3 S21: 0.4229 S22: 0.2589 S23: 0.0695 REMARK 3 S31: -0.1006 S32: -0.1453 S33: -0.0855 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4LS9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 08-AUG-13. REMARK 100 THE RCSB ID CODE IS RCSB081021. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-MAY-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9788 REMARK 200 MONOCHROMATOR : SILICON MIRRORS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33001 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 58.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: AUTORICKSHAW REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.29 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 6000, PH 7.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 43.04500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 MSE A 1 REMARK 465 PRO A 2 REMARK 465 VAL A 3 REMARK 465 THR A 4 REMARK 465 THR A 5 REMARK 465 THR A 6 REMARK 465 ASP A 7 REMARK 465 PRO A 8 REMARK 465 LYS A 9 REMARK 465 THR A 10 REMARK 465 GLY A 11 REMARK 465 LEU A 12 REMARK 465 LEU A 13 REMARK 465 THR A 14 REMARK 465 GLY A 15 REMARK 465 PRO A 16 REMARK 465 ASP A 17 REMARK 465 ALA A 18 REMARK 465 GLN A 19 REMARK 465 ILE A 20 REMARK 465 ALA A 21 REMARK 465 SER B 0 REMARK 465 MSE B 1 REMARK 465 PRO B 2 REMARK 465 VAL B 3 REMARK 465 THR B 4 REMARK 465 THR B 5 REMARK 465 THR B 6 REMARK 465 ASP B 7 REMARK 465 PRO B 8 REMARK 465 LYS B 9 REMARK 465 THR B 10 REMARK 465 GLY B 11 REMARK 465 LEU B 12 REMARK 465 LEU B 13 REMARK 465 THR B 14 REMARK 465 GLY B 15 REMARK 465 PRO B 16 REMARK 465 ASP B 17 REMARK 465 ALA B 18 REMARK 465 GLN B 19 REMARK 465 ILE B 20 REMARK 465 ALA B 21 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 119 1.79 -66.76 REMARK 500 ASP A 219 57.94 -118.83 REMARK 500 PRO A 263 -37.64 -37.88 REMARK 500 ASP B 219 17.24 51.64 REMARK 500 MSE B 291 -19.48 80.51 REMARK 500 SER B 301 -18.82 -140.95 REMARK 500 ALA B 319 78.66 -156.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 VAL A 302 24.0 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1173 DISTANCE = 5.59 ANGSTROMS REMARK 525 HOH A1194 DISTANCE = 5.97 ANGSTROMS REMARK 525 HOH B1156 DISTANCE = 6.62 ANGSTROMS REMARK 525 HOH B1162 DISTANCE = 7.58 ANGSTROMS REMARK 525 HOH B1177 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH B1208 DISTANCE = 6.63 ANGSTROMS REMARK 525 HOH B1231 DISTANCE = 6.66 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B1001 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 51 OD2 REMARK 620 2 ASP B 185 OD2 81.4 REMARK 620 3 HIS B 135 NE2 99.2 83.2 REMARK 620 4 ASP B 110 OD2 85.5 145.1 130.9 REMARK 620 5 ASP B 110 OD1 88.4 160.3 81.9 49.2 REMARK 620 6 HOH B1191 O 111.1 77.5 140.8 77.4 122.0 REMARK 620 7 HOH B1109 O 174.1 102.4 76.9 93.7 86.7 74.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A1001 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 51 OD2 REMARK 620 2 ASP A 110 OD1 82.6 REMARK 620 3 ASP A 185 OD2 80.2 157.1 REMARK 620 4 HIS A 135 NE2 101.0 83.9 84.5 REMARK 620 5 ASP A 110 OD2 87.5 52.6 140.9 134.5 REMARK 620 6 HOH A1228 O 174.9 96.2 99.5 73.9 95.8 REMARK 620 7 HOH A1229 O 105.6 126.7 73.1 141.2 74.9 79.0 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 1002 DBREF 4LS9 A 1 340 UNP A0QVM9 A0QVM9_MYCS2 1 340 DBREF 4LS9 B 1 340 UNP A0QVM9 A0QVM9_MYCS2 1 340 SEQADV 4LS9 SER A 0 UNP A0QVM9 EXPRESSION TAG SEQADV 4LS9 SER B 0 UNP A0QVM9 EXPRESSION TAG SEQRES 1 A 341 SER MSE PRO VAL THR THR THR ASP PRO LYS THR GLY LEU SEQRES 2 A 341 LEU THR GLY PRO ASP ALA GLN ILE ALA GLY ALA ARG VAL SEQRES 3 A 341 ASP ALA ARG GLY ALA ALA ASP LEU LEU THR ALA ALA SER SEQRES 4 A 341 SER VAL SER VAL ILE CYS HIS VAL TYR PRO ASP ALA ASP SEQRES 5 A 341 THR ILE GLY ALA GLY LEU ALA LEU ALA GLN VAL LEU ALA SEQRES 6 A 341 ALA SER GLY LYS HIS VAL GLU VAL SER PHE ALA THR PRO SEQRES 7 A 341 ALA GLN LEU PRO GLU SER LEU GLN SER LEU PRO GLY GLY SEQRES 8 A 341 HIS LEU LEU VAL ALA PRO GLU ALA MSE ARG ARG ASP ALA SEQRES 9 A 341 ASP LEU VAL VAL THR VAL ASP ILE PRO SER ILE ASN ARG SEQRES 10 A 341 LEU GLY ALA LEU SER GLY LEU ALA GLY PRO GLY ARG GLU SEQRES 11 A 341 VAL LEU VAL ILE ASP HIS HIS ALA SER ASN GLN LEU PHE SEQRES 12 A 341 GLY THR ALA ASN TYR ILE ASP PRO SER ALA ASP SER THR SEQRES 13 A 341 THR MSE LEU VAL ALA GLU LEU LEU ASP ALA TRP GLY LYS SEQRES 14 A 341 PRO ILE ASP GLU LYS VAL ALA HIS CYS LEU TYR ALA GLY SEQRES 15 A 341 LEU THR THR ASP THR GLY SER PHE ARG TRP ALA THR ALA SEQRES 16 A 341 ARG ALA HIS ARG LEU ALA ALA ARG LEU VAL GLU LEU GLY SEQRES 17 A 341 VAL ASP ASN ALA SER ILE SER ARG THR LEU LEU ASP THR SEQRES 18 A 341 HIS PRO PHE ALA TRP LEU PRO MSE LEU SER ARG VAL LEU SEQRES 19 A 341 ALA THR ALA ARG LEU LEU PRO ASP ALA LEU ASP GLY ARG SEQRES 20 A 341 GLY PHE VAL TYR ALA VAL VAL PRO HIS ASP GLU TRP SER SEQRES 21 A 341 GLU ALA ARG PRO GLU GLU VAL GLU SER ILE VAL ASP ILE SEQRES 22 A 341 VAL ARG THR THR GLN GLN ALA GLU VAL ALA ALA VAL PHE SEQRES 23 A 341 LYS GLU ILE GLU PRO MSE HIS TRP SER VAL SER MSE ARG SEQRES 24 A 341 ALA LYS SER VAL ASN LEU ALA SER VAL ALA SER ALA PHE SEQRES 25 A 341 GLY GLY GLY GLY HIS PRO HIS ALA ALA GLY TYR SER ALA SEQRES 26 A 341 THR GLY SER ALA ASP ASP VAL VAL GLN ALA LEU ALA ARG SEQRES 27 A 341 ALA LEU GLY SEQRES 1 B 341 SER MSE PRO VAL THR THR THR ASP PRO LYS THR GLY LEU SEQRES 2 B 341 LEU THR GLY PRO ASP ALA GLN ILE ALA GLY ALA ARG VAL SEQRES 3 B 341 ASP ALA ARG GLY ALA ALA ASP LEU LEU THR ALA ALA SER SEQRES 4 B 341 SER VAL SER VAL ILE CYS HIS VAL TYR PRO ASP ALA ASP SEQRES 5 B 341 THR ILE GLY ALA GLY LEU ALA LEU ALA GLN VAL LEU ALA SEQRES 6 B 341 ALA SER GLY LYS HIS VAL GLU VAL SER PHE ALA THR PRO SEQRES 7 B 341 ALA GLN LEU PRO GLU SER LEU GLN SER LEU PRO GLY GLY SEQRES 8 B 341 HIS LEU LEU VAL ALA PRO GLU ALA MSE ARG ARG ASP ALA SEQRES 9 B 341 ASP LEU VAL VAL THR VAL ASP ILE PRO SER ILE ASN ARG SEQRES 10 B 341 LEU GLY ALA LEU SER GLY LEU ALA GLY PRO GLY ARG GLU SEQRES 11 B 341 VAL LEU VAL ILE ASP HIS HIS ALA SER ASN GLN LEU PHE SEQRES 12 B 341 GLY THR ALA ASN TYR ILE ASP PRO SER ALA ASP SER THR SEQRES 13 B 341 THR MSE LEU VAL ALA GLU LEU LEU ASP ALA TRP GLY LYS SEQRES 14 B 341 PRO ILE ASP GLU LYS VAL ALA HIS CYS LEU TYR ALA GLY SEQRES 15 B 341 LEU THR THR ASP THR GLY SER PHE ARG TRP ALA THR ALA SEQRES 16 B 341 ARG ALA HIS ARG LEU ALA ALA ARG LEU VAL GLU LEU GLY SEQRES 17 B 341 VAL ASP ASN ALA SER ILE SER ARG THR LEU LEU ASP THR SEQRES 18 B 341 HIS PRO PHE ALA TRP LEU PRO MSE LEU SER ARG VAL LEU SEQRES 19 B 341 ALA THR ALA ARG LEU LEU PRO ASP ALA LEU ASP GLY ARG SEQRES 20 B 341 GLY PHE VAL TYR ALA VAL VAL PRO HIS ASP GLU TRP SER SEQRES 21 B 341 GLU ALA ARG PRO GLU GLU VAL GLU SER ILE VAL ASP ILE SEQRES 22 B 341 VAL ARG THR THR GLN GLN ALA GLU VAL ALA ALA VAL PHE SEQRES 23 B 341 LYS GLU ILE GLU PRO MSE HIS TRP SER VAL SER MSE ARG SEQRES 24 B 341 ALA LYS SER VAL ASN LEU ALA SER VAL ALA SER ALA PHE SEQRES 25 B 341 GLY GLY GLY GLY HIS PRO HIS ALA ALA GLY TYR SER ALA SEQRES 26 B 341 THR GLY SER ALA ASP ASP VAL VAL GLN ALA LEU ALA ARG SEQRES 27 B 341 ALA LEU GLY MODRES 4LS9 MSE A 99 MET SELENOMETHIONINE MODRES 4LS9 MSE A 157 MET SELENOMETHIONINE MODRES 4LS9 MSE A 228 MET SELENOMETHIONINE MODRES 4LS9 MSE A 291 MET SELENOMETHIONINE MODRES 4LS9 MSE A 297 MET SELENOMETHIONINE MODRES 4LS9 MSE B 99 MET SELENOMETHIONINE MODRES 4LS9 MSE B 157 MET SELENOMETHIONINE MODRES 4LS9 MSE B 228 MET SELENOMETHIONINE MODRES 4LS9 MSE B 291 MET SELENOMETHIONINE MODRES 4LS9 MSE B 297 MET SELENOMETHIONINE HET MSE A 99 8 HET MSE A 157 8 HET MSE A 228 8 HET MSE A 291 8 HET MSE A 297 8 HET MSE B 99 8 HET MSE B 157 8 HET MSE B 228 8 HET MSE B 291 8 HET MSE B 297 8 HET MN A1001 1 HET MN B1001 1 HET GOL B1002 6 HETNAM MSE SELENOMETHIONINE HETNAM MN MANGANESE (II) ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 3 MN 2(MN 2+) FORMUL 5 GOL C3 H8 O3 FORMUL 6 HOH *268(H2 O) HELIX 1 1 ASP A 26 ALA A 37 1 12 HELIX 2 2 ASP A 49 SER A 66 1 18 HELIX 3 3 PRO A 81 SER A 86 1 6 HELIX 4 4 GLY A 89 LEU A 93 5 5 HELIX 5 5 SER A 113 GLY A 125 5 13 HELIX 6 6 SER A 154 GLY A 167 1 14 HELIX 7 7 ASP A 171 THR A 186 1 16 HELIX 8 8 THR A 193 LEU A 206 1 14 HELIX 9 9 ASP A 209 ASP A 219 1 11 HELIX 10 10 ALA A 224 ALA A 234 1 11 HELIX 11 11 PRO A 254 ALA A 261 1 8 HELIX 12 12 ARG A 262 SER A 268 1 7 HELIX 13 13 SER A 268 ARG A 274 1 7 HELIX 14 14 LEU A 304 PHE A 311 1 8 HELIX 15 15 SER A 327 GLY A 340 1 14 HELIX 16 16 ASP B 26 ALA B 37 1 12 HELIX 17 17 ASP B 49 SER B 66 1 18 HELIX 18 18 PRO B 81 LEU B 87 5 7 HELIX 19 19 GLY B 89 LEU B 93 5 5 HELIX 20 20 SER B 113 GLY B 125 5 13 HELIX 21 21 SER B 154 TRP B 166 1 13 HELIX 22 22 ASP B 171 THR B 186 1 16 HELIX 23 23 THR B 193 LEU B 206 1 14 HELIX 24 24 ASP B 209 LEU B 218 1 10 HELIX 25 25 ALA B 224 ALA B 234 1 11 HELIX 26 26 ASP B 241 ARG B 246 1 6 HELIX 27 27 PRO B 254 ALA B 261 1 8 HELIX 28 28 ARG B 262 SER B 268 1 7 HELIX 29 29 SER B 268 ARG B 274 1 7 HELIX 30 30 LEU B 304 PHE B 311 1 8 HELIX 31 31 SER B 327 GLY B 340 1 14 SHEET 1 A 5 HIS A 69 SER A 73 0 SHEET 2 A 5 SER A 39 CYS A 44 1 N VAL A 42 O GLU A 71 SHEET 3 A 5 LEU A 105 VAL A 109 1 O VAL A 107 N ILE A 43 SHEET 4 A 5 GLU A 129 ASP A 134 1 O LEU A 131 N VAL A 106 SHEET 5 A 5 ALA A 145 ILE A 148 1 O TYR A 147 N VAL A 132 SHEET 1 B 6 ARG A 237 LEU A 239 0 SHEET 2 B 6 PHE A 248 VAL A 253 -1 O PHE A 248 N LEU A 239 SHEET 3 B 6 VAL A 281 GLU A 289 1 O PHE A 285 N VAL A 253 SHEET 4 B 6 HIS A 292 ALA A 299 -1 O SER A 294 N LYS A 286 SHEET 5 B 6 ALA A 319 THR A 325 -1 O ALA A 324 N TRP A 293 SHEET 6 B 6 GLY A 314 GLY A 315 -1 N GLY A 314 O GLY A 321 SHEET 1 C 5 HIS B 69 SER B 73 0 SHEET 2 C 5 SER B 39 ILE B 43 1 N VAL B 40 O HIS B 69 SHEET 3 C 5 LEU B 105 VAL B 109 1 O VAL B 107 N SER B 41 SHEET 4 C 5 GLU B 129 ASP B 134 1 O LEU B 131 N THR B 108 SHEET 5 C 5 ALA B 145 ILE B 148 1 O TYR B 147 N VAL B 132 SHEET 1 D 6 ARG B 237 LEU B 239 0 SHEET 2 D 6 PHE B 248 VAL B 253 -1 O PHE B 248 N LEU B 239 SHEET 3 D 6 VAL B 281 GLU B 289 1 O PHE B 285 N VAL B 253 SHEET 4 D 6 HIS B 292 ALA B 299 -1 O SER B 294 N LYS B 286 SHEET 5 D 6 ALA B 319 THR B 325 -1 O ALA B 324 N TRP B 293 SHEET 6 D 6 GLY B 314 HIS B 316 -1 N GLY B 314 O GLY B 321 LINK C ALA A 98 N MSE A 99 1555 1555 1.35 LINK C MSE A 99 N ARG A 100 1555 1555 1.36 LINK C THR A 156 N MSE A 157 1555 1555 1.38 LINK C MSE A 157 N LEU A 158 1555 1555 1.35 LINK C PRO A 227 N MSE A 228 1555 1555 1.36 LINK C MSE A 228 N LEU A 229 1555 1555 1.37 LINK C PRO A 290 N MSE A 291 1555 1555 1.36 LINK C MSE A 291 N HIS A 292 1555 1555 1.34 LINK C SER A 296 N MSE A 297 1555 1555 1.33 LINK C MSE A 297 N ARG A 298 1555 1555 1.33 LINK C ALA B 98 N MSE B 99 1555 1555 1.36 LINK C MSE B 99 N ARG B 100 1555 1555 1.34 LINK C THR B 156 N MSE B 157 1555 1555 1.36 LINK C MSE B 157 N LEU B 158 1555 1555 1.35 LINK C PRO B 227 N MSE B 228 1555 1555 1.36 LINK C MSE B 228 N LEU B 229 1555 1555 1.35 LINK C PRO B 290 N MSE B 291 1555 1555 1.35 LINK C MSE B 291 N HIS B 292 1555 1555 1.35 LINK C SER B 296 N MSE B 297 1555 1555 1.32 LINK C MSE B 297 N ARG B 298 1555 1555 1.33 LINK OD2 ASP B 51 MN MN B1001 1555 1555 2.07 LINK OD2 ASP A 51 MN MN A1001 1555 1555 2.17 LINK OD1 ASP A 110 MN MN A1001 1555 1555 2.29 LINK OD2 ASP B 185 MN MN B1001 1555 1555 2.32 LINK OD2 ASP A 185 MN MN A1001 1555 1555 2.37 LINK NE2 HIS A 135 MN MN A1001 1555 1555 2.41 LINK NE2 HIS B 135 MN MN B1001 1555 1555 2.42 LINK OD2 ASP B 110 MN MN B1001 1555 1555 2.61 LINK OD2 ASP A 110 MN MN A1001 1555 1555 2.62 LINK OD1 ASP B 110 MN MN B1001 1555 1555 2.68 LINK MN MN A1001 O HOH A1228 1555 1555 2.39 LINK MN MN B1001 O HOH B1191 1555 1555 2.60 LINK MN MN A1001 O HOH A1229 1555 1555 2.70 LINK MN MN B1001 O HOH B1109 1555 1555 2.77 CISPEP 1 THR A 76 PRO A 77 0 -2.41 CISPEP 2 THR B 76 PRO B 77 0 -3.03 SITE 1 AC1 6 ASP A 51 ASP A 110 HIS A 135 ASP A 185 SITE 2 AC1 6 HOH A1228 HOH A1229 SITE 1 AC2 6 ASP B 51 ASP B 110 HIS B 135 ASP B 185 SITE 2 AC2 6 HOH B1109 HOH B1191 SITE 1 AC3 1 PRO B 150 CRYST1 65.870 86.090 66.030 90.00 118.37 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015181 0.000000 0.008198 0.00000 SCALE2 0.000000 0.011616 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017212 0.00000