HEADER LYASE 22-JUL-13 4LSB TITLE CRYSTAL STRUCTURE OF A PUTATIVE LYASE/MUTASE FROM BURKHOLDERIA TITLE 2 CENOCEPACIA J2315 COMPND MOL_ID: 1; COMPND 2 MOLECULE: LYASE/MUTASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA CENOCEPACIA; SOURCE 3 ORGANISM_TAXID: 216591; SOURCE 4 STRAIN: J2315; SOURCE 5 GENE: BCEJ2315_55920, BCAM2155; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS STRUCTURAL GENOMICS, NIAID, NATIONAL INSTITUTE OF ALLERGY AND KEYWDS 2 INFECTIOUS DISEASES, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 3 INFECTIOUS DISEASE, SSGCID, LYASE, MUTASE, CYSTIC FIBROSIS EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 2 20-SEP-23 4LSB 1 REMARK SEQADV LINK REVDAT 1 14-AUG-13 4LSB 0 JRNL AUTH SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE JRNL AUTH 2 (SSGCID) JRNL TITL CRYSTAL STRUCTURE OF A PUTATIVE LYASE/MUTASE FROM JRNL TITL 2 BURKHOLDERIA CENOCEPACIA J2315 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.33 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.8 REMARK 3 NUMBER OF REFLECTIONS : 45828 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.169 REMARK 3 R VALUE (WORKING SET) : 0.167 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2440 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3243 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.78 REMARK 3 BIN R VALUE (WORKING SET) : 0.2270 REMARK 3 BIN FREE R VALUE SET COUNT : 164 REMARK 3 BIN FREE R VALUE : 0.2920 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3986 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 402 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 14.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.27 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.16000 REMARK 3 B22 (A**2) : -1.39000 REMARK 3 B33 (A**2) : -1.77000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.122 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.121 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.090 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.690 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4058 ; 0.015 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3825 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5537 ; 1.568 ; 1.957 REMARK 3 BOND ANGLES OTHERS (DEGREES): 8710 ; 0.852 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 552 ; 5.708 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 170 ;37.325 ;22.706 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 546 ;12.392 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 40 ;15.041 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 640 ; 0.091 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4792 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 928 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2217 ; 1.338 ; 1.706 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2216 ; 1.334 ; 1.705 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2766 ; 2.064 ; 2.548 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2767 ; 2.065 ; 2.550 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1841 ; 1.881 ; 1.910 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1841 ; 1.878 ; 1.909 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2771 ; 2.882 ; 2.788 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4906 ; 4.951 ;14.956 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4703 ; 4.769 ;14.395 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 281 REMARK 3 RESIDUE RANGE : A 501 A 501 REMARK 3 ORIGIN FOR THE GROUP (A): -12.4829 -16.3837 18.5583 REMARK 3 T TENSOR REMARK 3 T11: 0.0421 T22: 0.0322 REMARK 3 T33: 0.0147 T12: -0.0052 REMARK 3 T13: -0.0125 T23: -0.0016 REMARK 3 L TENSOR REMARK 3 L11: 0.0201 L22: 0.2523 REMARK 3 L33: 0.7267 L12: -0.0495 REMARK 3 L13: 0.0543 L23: 0.0956 REMARK 3 S TENSOR REMARK 3 S11: 0.0121 S12: -0.0053 S13: 0.0001 REMARK 3 S21: -0.0433 S22: -0.0346 S23: 0.0055 REMARK 3 S31: 0.0025 S32: -0.0477 S33: 0.0225 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 4 B 282 REMARK 3 RESIDUE RANGE : B 501 B 501 REMARK 3 ORIGIN FOR THE GROUP (A): -7.5896 -15.7474 52.2718 REMARK 3 T TENSOR REMARK 3 T11: 0.0570 T22: 0.0170 REMARK 3 T33: 0.0351 T12: 0.0001 REMARK 3 T13: 0.0007 T23: -0.0004 REMARK 3 L TENSOR REMARK 3 L11: 0.2381 L22: 0.1374 REMARK 3 L33: 0.5392 L12: -0.1708 REMARK 3 L13: 0.1295 L23: -0.1135 REMARK 3 S TENSOR REMARK 3 S11: -0.0344 S12: 0.0228 S13: -0.0693 REMARK 3 S21: 0.0407 S22: 0.0010 S23: 0.0504 REMARK 3 S31: -0.0266 S32: 0.0113 S33: 0.0334 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4LSB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-JUL-13. REMARK 100 THE DEPOSITION ID IS D_1000081023. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9798 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48518 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.06400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 4.97 REMARK 200 R MERGE FOR SHELL (I) : 0.46600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 2ZE3 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG 8000, 0.2M MGCL2, TRIS HCL PH REMARK 280 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 26.53000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 70.93000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.01500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 70.93000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 26.53000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 35.01500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20390 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -87.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ILE A 2 REMARK 465 ARG A 3 REMARK 465 SER A 4 REMARK 465 ILE A 282 REMARK 465 LEU A 283 REMARK 465 PHE A 284 REMARK 465 ASP A 285 REMARK 465 GLU A 286 REMARK 465 MET B -7 REMARK 465 ALA B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 ILE B 2 REMARK 465 ARG B 3 REMARK 465 ALA B 63 REMARK 465 LEU B 283 REMARK 465 PHE B 284 REMARK 465 ASP B 285 REMARK 465 GLU B 286 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 5 CG OD1 OD2 REMARK 470 ARG A 15 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 62 CG OD1 ND2 REMARK 470 ILE A 64 CG1 CG2 CD1 REMARK 470 ARG A 145 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 268 CG CD NE CZ NH1 NH2 REMARK 470 SER A 280 OG REMARK 470 PRO A 281 CG CD REMARK 470 SER B 4 OG REMARK 470 ASP B 5 CG OD1 OD2 REMARK 470 ARG B 9 CG CD NE CZ NH1 NH2 REMARK 470 ASN B 62 CG OD1 ND2 REMARK 470 ILE B 64 CG1 CG2 CD1 REMARK 470 ASP B 124 CG OD1 OD2 REMARK 470 ARG B 164 CG CD NE CZ NH1 NH2 REMARK 470 LEU B 213 CG CD1 CD2 REMARK 470 GLN B 214 CG CD OE1 NE2 REMARK 470 ARG B 254 CG CD NE CZ NH1 NH2 REMARK 470 ILE B 282 CG1 CG2 CD1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 101 CD GLU A 101 OE1 0.085 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 201 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 PRO A 281 C - N - CA ANGL. DEV. = 13.2 DEGREES REMARK 500 ARG B 145 NE - CZ - NH1 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG B 145 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 89 -136.42 50.36 REMARK 500 GLU B 89 -131.39 48.20 REMARK 500 GLN B 214 -150.61 -138.39 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER B 4 ASP B 5 139.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER A 50 OG REMARK 620 2 HOH A 713 O 78.4 REMARK 620 3 HOH A 714 O 68.4 91.7 REMARK 620 4 HOH A 715 O 111.0 157.5 110.7 REMARK 620 5 HOH A 716 O 104.0 96.9 167.2 61.4 REMARK 620 6 HOH A 802 O 150.3 77.2 95.6 98.0 95.6 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 SER B 50 OG REMARK 620 2 GLU B 89 OE2 90.6 REMARK 620 3 HOH B 746 O 90.4 83.0 REMARK 620 4 HOH B 747 O 176.6 89.6 86.3 REMARK 620 5 HOH B 781 O 82.0 168.3 88.0 97.2 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2ZE3 RELATED DB: PDB REMARK 900 RELATED ID: 3FA3 RELATED DB: PDB REMARK 900 RELATED ID: SSGCID-BUCEA.00014.A RELATED DB: TARGETTRACK DBREF 4LSB A 1 286 UNP B4EFV2 B4EFV2_BURCJ 1 286 DBREF 4LSB B 1 286 UNP B4EFV2 B4EFV2_BURCJ 1 286 SEQADV 4LSB MET A -7 UNP B4EFV2 EXPRESSION TAG SEQADV 4LSB ALA A -6 UNP B4EFV2 EXPRESSION TAG SEQADV 4LSB HIS A -5 UNP B4EFV2 EXPRESSION TAG SEQADV 4LSB HIS A -4 UNP B4EFV2 EXPRESSION TAG SEQADV 4LSB HIS A -3 UNP B4EFV2 EXPRESSION TAG SEQADV 4LSB HIS A -2 UNP B4EFV2 EXPRESSION TAG SEQADV 4LSB HIS A -1 UNP B4EFV2 EXPRESSION TAG SEQADV 4LSB HIS A 0 UNP B4EFV2 EXPRESSION TAG SEQADV 4LSB MET B -7 UNP B4EFV2 EXPRESSION TAG SEQADV 4LSB ALA B -6 UNP B4EFV2 EXPRESSION TAG SEQADV 4LSB HIS B -5 UNP B4EFV2 EXPRESSION TAG SEQADV 4LSB HIS B -4 UNP B4EFV2 EXPRESSION TAG SEQADV 4LSB HIS B -3 UNP B4EFV2 EXPRESSION TAG SEQADV 4LSB HIS B -2 UNP B4EFV2 EXPRESSION TAG SEQADV 4LSB HIS B -1 UNP B4EFV2 EXPRESSION TAG SEQADV 4LSB HIS B 0 UNP B4EFV2 EXPRESSION TAG SEQRES 1 A 294 MET ALA HIS HIS HIS HIS HIS HIS MET ILE ARG SER ASP SEQRES 2 A 294 LEU GLN ALA ARG HIS ALA GLU ALA PHE ARG ALA LEU HIS SEQRES 3 A 294 THR ARG PRO GLY ALA PHE ILE ILE PRO ASN PRO TRP ASP SEQRES 4 A 294 ALA GLY THR ALA ARG LEU LEU ALA MET ALA GLY PHE GLU SEQRES 5 A 294 ALA LEU ALA THR THR SER ALA GLY TYR ALA PHE SER LYS SEQRES 6 A 294 GLY GLN PRO ASP ASN ALA ILE ASP ARG ASP ALA MET LEU SEQRES 7 A 294 ASP HIS ILE ALA ASP LEU VAL ALA ALA GLY GLY LEU PRO SEQRES 8 A 294 VAL SER ALA ASP LEU GLU ASN GLY PHE GLY ASP ALA PRO SEQRES 9 A 294 GLY THR VAL ALA GLU THR ILE ARG LEU ALA ALA GLU ALA SEQRES 10 A 294 GLY ALA VAL GLY GLY SER ILE GLU ASP ALA THR GLY ARG SEQRES 11 A 294 ALA ASP THR PRO ILE TYR ALA ARG ASP ALA SER VAL GLU SEQRES 12 A 294 ARG ILE ALA ALA ALA VAL ASP ALA ALA ARG ALA LEU PRO SEQRES 13 A 294 PHE PRO PHE THR LEU THR ALA ARG CYS GLU ASN TYR LEU SEQRES 14 A 294 HIS GLY ARG ARG ASP LEU ASP ASP THR ILE ALA ARG LEU SEQRES 15 A 294 VAL ALA TYR ARG ASP ALA GLY ALA ASP VAL LEU TYR ALA SEQRES 16 A 294 PRO GLY ILE THR ASP ALA ASP GLU ILE ALA ALA VAL THR SEQRES 17 A 294 ARG ALA VAL GLY ALA PRO VAL ASN VAL VAL MET GLY LEU SEQRES 18 A 294 GLN GLY GLY LEU LEU SER LEU ASP GLU LEU ALA ALA LEU SEQRES 19 A 294 GLY VAL LYS ARG VAL SER VAL GLY GLY ALA LEU ALA ARG SEQRES 20 A 294 ALA ALA LEU GLY ALA PHE LEU ARG ALA ALA THR GLU MET SEQRES 21 A 294 ARG ARG ASP GLY THR PHE THR PHE THR GLN ALA ALA VAL SEQRES 22 A 294 PRO GLY ARG ASP ILE ASN ARG TRP PHE ALA ALA PRO ASP SEQRES 23 A 294 ASN SER PRO ILE LEU PHE ASP GLU SEQRES 1 B 294 MET ALA HIS HIS HIS HIS HIS HIS MET ILE ARG SER ASP SEQRES 2 B 294 LEU GLN ALA ARG HIS ALA GLU ALA PHE ARG ALA LEU HIS SEQRES 3 B 294 THR ARG PRO GLY ALA PHE ILE ILE PRO ASN PRO TRP ASP SEQRES 4 B 294 ALA GLY THR ALA ARG LEU LEU ALA MET ALA GLY PHE GLU SEQRES 5 B 294 ALA LEU ALA THR THR SER ALA GLY TYR ALA PHE SER LYS SEQRES 6 B 294 GLY GLN PRO ASP ASN ALA ILE ASP ARG ASP ALA MET LEU SEQRES 7 B 294 ASP HIS ILE ALA ASP LEU VAL ALA ALA GLY GLY LEU PRO SEQRES 8 B 294 VAL SER ALA ASP LEU GLU ASN GLY PHE GLY ASP ALA PRO SEQRES 9 B 294 GLY THR VAL ALA GLU THR ILE ARG LEU ALA ALA GLU ALA SEQRES 10 B 294 GLY ALA VAL GLY GLY SER ILE GLU ASP ALA THR GLY ARG SEQRES 11 B 294 ALA ASP THR PRO ILE TYR ALA ARG ASP ALA SER VAL GLU SEQRES 12 B 294 ARG ILE ALA ALA ALA VAL ASP ALA ALA ARG ALA LEU PRO SEQRES 13 B 294 PHE PRO PHE THR LEU THR ALA ARG CYS GLU ASN TYR LEU SEQRES 14 B 294 HIS GLY ARG ARG ASP LEU ASP ASP THR ILE ALA ARG LEU SEQRES 15 B 294 VAL ALA TYR ARG ASP ALA GLY ALA ASP VAL LEU TYR ALA SEQRES 16 B 294 PRO GLY ILE THR ASP ALA ASP GLU ILE ALA ALA VAL THR SEQRES 17 B 294 ARG ALA VAL GLY ALA PRO VAL ASN VAL VAL MET GLY LEU SEQRES 18 B 294 GLN GLY GLY LEU LEU SER LEU ASP GLU LEU ALA ALA LEU SEQRES 19 B 294 GLY VAL LYS ARG VAL SER VAL GLY GLY ALA LEU ALA ARG SEQRES 20 B 294 ALA ALA LEU GLY ALA PHE LEU ARG ALA ALA THR GLU MET SEQRES 21 B 294 ARG ARG ASP GLY THR PHE THR PHE THR GLN ALA ALA VAL SEQRES 22 B 294 PRO GLY ARG ASP ILE ASN ARG TRP PHE ALA ALA PRO ASP SEQRES 23 B 294 ASN SER PRO ILE LEU PHE ASP GLU HET MG A 501 1 HET CL A 502 1 HET MG B 501 1 HET CL B 502 1 HETNAM MG MAGNESIUM ION HETNAM CL CHLORIDE ION FORMUL 3 MG 2(MG 2+) FORMUL 4 CL 2(CL 1-) FORMUL 7 HOH *402(H2 O) HELIX 1 1 ASP A 5 ARG A 20 1 16 HELIX 2 2 ASP A 31 ALA A 41 1 11 HELIX 3 3 THR A 49 LYS A 57 1 9 HELIX 4 4 ASP A 65 GLY A 81 1 17 HELIX 5 5 ALA A 95 ALA A 109 1 15 HELIX 6 6 ALA A 129 LEU A 147 1 19 HELIX 7 7 GLU A 158 HIS A 162 5 5 HELIX 8 8 ASP A 166 GLY A 181 1 16 HELIX 9 9 ASP A 192 GLY A 204 1 13 HELIX 10 10 SER A 219 LEU A 226 1 8 HELIX 11 11 GLY A 235 GLY A 256 1 22 HELIX 12 12 PHE A 258 ALA A 264 5 7 HELIX 13 13 PRO A 266 ALA A 276 1 11 HELIX 14 14 ASP B 5 HIS B 18 1 14 HELIX 15 15 ASP B 31 ALA B 41 1 11 HELIX 16 16 THR B 49 LYS B 57 1 9 HELIX 17 17 ASP B 65 GLY B 81 1 17 HELIX 18 18 ALA B 95 ALA B 109 1 15 HELIX 19 19 ALA B 129 ALA B 146 1 18 HELIX 20 20 GLU B 158 HIS B 162 5 5 HELIX 21 21 ASP B 166 ALA B 180 1 15 HELIX 22 22 ASP B 192 GLY B 204 1 13 HELIX 23 23 SER B 219 LEU B 226 1 8 HELIX 24 24 GLY B 235 GLY B 256 1 22 HELIX 25 25 PHE B 258 ALA B 264 5 7 HELIX 26 26 PRO B 266 ALA B 276 1 11 SHEET 1 A 8 PHE A 24 ILE A 26 0 SHEET 2 A 8 ARG A 230 SER A 232 1 O VAL A 231 N ILE A 26 SHEET 3 A 8 VAL A 207 VAL A 210 1 N VAL A 209 O ARG A 230 SHEET 4 A 8 VAL A 184 TYR A 186 1 N LEU A 185 O ASN A 208 SHEET 5 A 8 THR A 152 ARG A 156 1 N ALA A 155 O VAL A 184 SHEET 6 A 8 GLY A 113 GLU A 117 1 N GLY A 114 O THR A 154 SHEET 7 A 8 VAL A 84 ASP A 87 1 N ALA A 86 O GLY A 113 SHEET 8 A 8 LEU A 46 ALA A 47 1 N LEU A 46 O SER A 85 SHEET 1 B 8 PHE B 24 ILE B 26 0 SHEET 2 B 8 ARG B 230 SER B 232 1 O VAL B 231 N ILE B 26 SHEET 3 B 8 VAL B 207 VAL B 210 1 N VAL B 209 O ARG B 230 SHEET 4 B 8 VAL B 184 TYR B 186 1 N LEU B 185 O ASN B 208 SHEET 5 B 8 THR B 152 ARG B 156 1 N ALA B 155 O VAL B 184 SHEET 6 B 8 GLY B 113 GLU B 117 1 N GLY B 114 O THR B 154 SHEET 7 B 8 VAL B 84 ASP B 87 1 N ALA B 86 O GLY B 113 SHEET 8 B 8 LEU B 46 ALA B 47 1 N LEU B 46 O SER B 85 LINK OG SER A 50 MG MG A 501 1555 1555 2.50 LINK MG MG A 501 O HOH A 713 1555 1555 2.29 LINK MG MG A 501 O HOH A 714 1555 1555 1.75 LINK MG MG A 501 O HOH A 715 1555 1555 1.90 LINK MG MG A 501 O HOH A 716 1555 1555 2.93 LINK MG MG A 501 O HOH A 802 1555 1555 2.15 LINK OG SER B 50 MG MG B 501 1555 1555 2.41 LINK OE2 GLU B 89 MG MG B 501 1555 1555 2.08 LINK MG MG B 501 O HOH B 746 1555 1555 2.42 LINK MG MG B 501 O HOH B 747 1555 1555 2.18 LINK MG MG B 501 O HOH B 781 1555 1555 2.03 SITE 1 AC1 7 SER A 50 ASP A 61 HOH A 713 HOH A 714 SITE 2 AC1 7 HOH A 715 HOH A 716 HOH A 802 SITE 1 AC2 3 ALA A 51 ARG A 239 HOH A 606 SITE 1 AC3 6 SER B 50 ASP B 61 GLU B 89 HOH B 746 SITE 2 AC3 6 HOH B 747 HOH B 781 SITE 1 AC4 2 GLY B 235 ARG B 239 CRYST1 53.060 70.030 141.860 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018847 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014280 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007049 0.00000