HEADER TRANSFERASE 24-JUL-13 4LU4 TITLE CRYSTAL STRUCTURE OF THE N-TERMINAL FIC DOMAIN OF A PUTATIVE CELL TITLE 2 FILAMENTATION PROTEIN (VIRB-TRANSLOCATED BEP EFFECTOR PROTEIN) FROM TITLE 3 BARTONELLA QUINTANA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE CELL FILAMENTATION PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: FIC DOMAIN (UNP RESIDUES 3-220); COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BARTONELLA QUINTANA; SOURCE 3 ORGANISM_TAXID: 1134506; SOURCE 4 STRAIN: JK 31; SOURCE 5 GENE: BQ10650; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS STRUCTURAL GENOMICS, NIAID, NATIONAL INSTITUTE OF ALLERGY AND KEYWDS 2 INFECTIOUS DISEASES, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 3 INFECTIOUS DISEASE, SSGCID, FIC DOMAIN, CELL FILAMENTATION, CELL KEYWDS 4 DIVISION, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 3 20-SEP-23 4LU4 1 REMARK REVDAT 2 08-SEP-21 4LU4 1 JRNL REMARK SEQADV REVDAT 1 06-AUG-14 4LU4 0 JRNL AUTH T.SCHIRMER,T.A.P.DE BEER,S.TAMEGGER,A.HARMS,N.DIETZ, JRNL AUTH 2 D.M.DRANOW,T.E.EDWARDS,P.J.MYLER,I.PHAN,C.DEHIO JRNL TITL EVOLUTIONARY DIVERSIFICATION OF HOST-TARGETED BARTONELLA JRNL TITL 2 EFFECTORS PROTEINS DERIVED FROM A CONSERVED FICTA JRNL TITL 3 TOXIN-ANTITOXIN MODULE. JRNL REF MICROORGANISMS V. 9 2021 JRNL REFN ESSN 2076-2607 JRNL PMID 34442725 JRNL DOI 10.3390/MICROORGANISMS9081645 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.92 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 28552 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.183 REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.235 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1517 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2115 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.82 REMARK 3 BIN R VALUE (WORKING SET) : 0.2210 REMARK 3 BIN FREE R VALUE SET COUNT : 83 REMARK 3 BIN FREE R VALUE : 0.2920 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3510 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 325 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.199 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.176 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.120 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.762 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.921 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3611 ; 0.017 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 3337 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4880 ; 1.749 ; 1.936 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7659 ; 0.926 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 440 ; 5.839 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 184 ;35.000 ;23.587 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 599 ;14.167 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;12.229 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 505 ; 0.100 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4154 ; 0.010 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 911 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1760 ; 0.986 ; 1.058 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1759 ; 0.986 ; 1.057 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2197 ; 1.600 ; 1.576 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1851 ; 1.538 ; 1.249 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 7 A 83 REMARK 3 ORIGIN FOR THE GROUP (A): 46.4530 8.2317 0.7437 REMARK 3 T TENSOR REMARK 3 T11: 0.0546 T22: 0.0514 REMARK 3 T33: 0.0340 T12: 0.0174 REMARK 3 T13: -0.0096 T23: -0.0240 REMARK 3 L TENSOR REMARK 3 L11: 1.1876 L22: 1.2320 REMARK 3 L33: 1.9975 L12: -0.3609 REMARK 3 L13: 0.1048 L23: -1.0985 REMARK 3 S TENSOR REMARK 3 S11: -0.0787 S12: -0.1131 S13: 0.0081 REMARK 3 S21: 0.1833 S22: 0.1001 S23: 0.0054 REMARK 3 S31: -0.0966 S32: -0.1295 S33: -0.0214 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 84 A 219 REMARK 3 ORIGIN FOR THE GROUP (A): 42.1288 11.7088 -15.1563 REMARK 3 T TENSOR REMARK 3 T11: 0.0334 T22: 0.0385 REMARK 3 T33: 0.0302 T12: -0.0063 REMARK 3 T13: 0.0118 T23: 0.0021 REMARK 3 L TENSOR REMARK 3 L11: 1.0717 L22: 0.8574 REMARK 3 L33: 0.2821 L12: -0.4657 REMARK 3 L13: 0.1374 L23: -0.0246 REMARK 3 S TENSOR REMARK 3 S11: 0.0138 S12: 0.0816 S13: 0.0552 REMARK 3 S21: -0.1126 S22: 0.0076 S23: -0.0474 REMARK 3 S31: 0.0448 S32: -0.0017 S33: -0.0214 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 7 B 88 REMARK 3 ORIGIN FOR THE GROUP (A): 46.0377 8.1683 44.8406 REMARK 3 T TENSOR REMARK 3 T11: 0.0802 T22: 0.0909 REMARK 3 T33: 0.0449 T12: 0.0226 REMARK 3 T13: -0.0117 T23: -0.0404 REMARK 3 L TENSOR REMARK 3 L11: 1.5984 L22: 1.9116 REMARK 3 L33: 2.4341 L12: -0.9890 REMARK 3 L13: 0.7850 L23: -0.8749 REMARK 3 S TENSOR REMARK 3 S11: -0.1518 S12: -0.2189 S13: -0.0054 REMARK 3 S21: 0.3664 S22: 0.0547 S23: 0.0377 REMARK 3 S31: -0.2078 S32: -0.2183 S33: 0.0971 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 89 B 219 REMARK 3 ORIGIN FOR THE GROUP (A): 41.4092 12.2375 27.6663 REMARK 3 T TENSOR REMARK 3 T11: 0.0390 T22: 0.0533 REMARK 3 T33: 0.0108 T12: -0.0123 REMARK 3 T13: 0.0012 T23: 0.0076 REMARK 3 L TENSOR REMARK 3 L11: 1.0804 L22: 1.5625 REMARK 3 L33: 0.3195 L12: -0.7625 REMARK 3 L13: 0.1725 L23: -0.1214 REMARK 3 S TENSOR REMARK 3 S11: -0.0378 S12: 0.0385 S13: 0.0742 REMARK 3 S21: -0.0343 S22: 0.0334 S23: -0.0826 REMARK 3 S31: 0.0517 S32: -0.0156 S33: 0.0043 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4LU4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-JUL-13. REMARK 100 THE DEPOSITION ID IS D_1000081088. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9786 REMARK 200 MONOCHROMATOR : DIAMOND [111] REMARK 200 OPTICS : BERYLLIUM LENSES REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XSCALE REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 30109 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.11400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.1800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.38600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.130 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.2 REMARK 200 STARTING MODEL: PDB ENTRY 2JK8 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.64 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.11 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: MORPHEUS_B11: 30MM EACH NAF, NABR, REMARK 280 NAI, 100MM TRIS BASE/BICINE, 15% GLYCEROL, 15% PEG 4000, PH 8.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 21.81500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: AUTHORS STATE THAT THE BIOLOGICAL UNIT IS UNKNOWN REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -6 REMARK 465 ALA A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 MET A 220 REMARK 465 MET B -6 REMARK 465 ALA B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 MET B 220 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 0 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 9 CG CD CE NZ REMARK 470 ARG A 24 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 49 CG CD CE NZ REMARK 470 ASN A 65 CG OD1 ND2 REMARK 470 LYS A 94 CG CD CE NZ REMARK 470 LYS A 97 CG CD CE NZ REMARK 470 LYS A 209 CG CD CE NZ REMARK 470 GLN A 219 CG CD OE1 NE2 REMARK 470 HIS B 0 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 9 CG CD CE NZ REMARK 470 ARG B 24 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 25 CG CD CE NZ REMARK 470 LYS B 49 CG CD CE NZ REMARK 470 ASN B 65 CG OD1 ND2 REMARK 470 LYS B 97 CG CD CE NZ REMARK 470 LYS B 112 CG CD CE NZ REMARK 470 ARG B 116 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 195 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 532 O HOH B 533 2.01 REMARK 500 O HOH A 510 O HOH A 511 2.06 REMARK 500 OD1 ASN A 40 O HOH A 548 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 29 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 ARG A 157 NE - CZ - NH1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG A 157 NE - CZ - NH2 ANGL. DEV. = -8.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 94 14.83 57.68 REMARK 500 MET B 88 80.65 -154.84 REMARK 500 HIS B 146 64.30 34.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD B 306 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: BAQUA.17330.C RELATED DB: TARGETTRACK DBREF 4LU4 A 3 220 UNP Q6FYV8 Q6FYV8_BARQU 3 220 DBREF 4LU4 B 3 220 UNP Q6FYV8 Q6FYV8_BARQU 3 220 SEQADV 4LU4 MET A -6 UNP Q6FYV8 INITIATING METHIONINE SEQADV 4LU4 ALA A -5 UNP Q6FYV8 EXPRESSION TAG SEQADV 4LU4 HIS A -4 UNP Q6FYV8 EXPRESSION TAG SEQADV 4LU4 HIS A -3 UNP Q6FYV8 EXPRESSION TAG SEQADV 4LU4 HIS A -2 UNP Q6FYV8 EXPRESSION TAG SEQADV 4LU4 HIS A -1 UNP Q6FYV8 EXPRESSION TAG SEQADV 4LU4 HIS A 0 UNP Q6FYV8 EXPRESSION TAG SEQADV 4LU4 HIS A 1 UNP Q6FYV8 EXPRESSION TAG SEQADV 4LU4 MET A 2 UNP Q6FYV8 EXPRESSION TAG SEQADV 4LU4 MET B -6 UNP Q6FYV8 INITIATING METHIONINE SEQADV 4LU4 ALA B -5 UNP Q6FYV8 EXPRESSION TAG SEQADV 4LU4 HIS B -4 UNP Q6FYV8 EXPRESSION TAG SEQADV 4LU4 HIS B -3 UNP Q6FYV8 EXPRESSION TAG SEQADV 4LU4 HIS B -2 UNP Q6FYV8 EXPRESSION TAG SEQADV 4LU4 HIS B -1 UNP Q6FYV8 EXPRESSION TAG SEQADV 4LU4 HIS B 0 UNP Q6FYV8 EXPRESSION TAG SEQADV 4LU4 HIS B 1 UNP Q6FYV8 EXPRESSION TAG SEQADV 4LU4 MET B 2 UNP Q6FYV8 EXPRESSION TAG SEQRES 1 A 227 MET ALA HIS HIS HIS HIS HIS HIS MET GLU HIS ASN TYR SEQRES 2 A 227 PHE TYR LYS ASN SER ALA THR LEU LYS ASN LYS HIS GLY SEQRES 3 A 227 ILE LYS ASN PRO ARG LYS LEU TYR GLU ARG CYS ALA HIS SEQRES 4 A 227 GLU THR ALA ARG GLU ALA VAL ASN PHE ARG LEU GLU PRO SEQRES 5 A 227 PRO PRO GLY LYS PHE ASP ALA ALA TYR LEU ARG THR ILE SEQRES 6 A 227 HIS TRP CYS LEU PHE HIS ASN THR PHE GLU TRP ALA GLY SEQRES 7 A 227 VAL THR ARG ASP GLN PRO PHE THR PHE GLU ASP GLY SER SEQRES 8 A 227 THR ALA CYS MET PRO ALA MET ARG PRO LYS GLY TYR LYS SEQRES 9 A 227 VAL PRO PHE ALA VAL GLY SER GLN ILE GLN ARG GLU LEU SEQRES 10 A 227 LYS LYS LEU GLU GLN ARG LEU THR ALA LYS ASN ASN LEU SEQRES 11 A 227 GLN GLY LEU SER ARG GLN GLU PHE ALA ALA ASN ALA ALA SEQRES 12 A 227 GLU VAL PHE THR ALA LEU ASP HIS ALA HIS PRO PHE ARG SEQRES 13 A 227 LYS GLY ASN GLY ARG THR GLN ARG MET PHE MET GLU LYS SEQRES 14 A 227 LEU GLY GLN ALA ALA GLY TYR LYS ILE ASP PHE SER LEU SEQRES 15 A 227 ILE THR LYS GLU ARG MET THR TYR ALA SER ILE GLU ALA SEQRES 16 A 227 MET GLN HIS ASN ASN PRO GLU PRO MET LYS ASP LEU PHE SEQRES 17 A 227 GLU ASP ILE THR HIS PRO GLN LYS SER LEU LEU LEU LYS SEQRES 18 A 227 GLU PHE ILE SER GLN MET SEQRES 1 B 227 MET ALA HIS HIS HIS HIS HIS HIS MET GLU HIS ASN TYR SEQRES 2 B 227 PHE TYR LYS ASN SER ALA THR LEU LYS ASN LYS HIS GLY SEQRES 3 B 227 ILE LYS ASN PRO ARG LYS LEU TYR GLU ARG CYS ALA HIS SEQRES 4 B 227 GLU THR ALA ARG GLU ALA VAL ASN PHE ARG LEU GLU PRO SEQRES 5 B 227 PRO PRO GLY LYS PHE ASP ALA ALA TYR LEU ARG THR ILE SEQRES 6 B 227 HIS TRP CYS LEU PHE HIS ASN THR PHE GLU TRP ALA GLY SEQRES 7 B 227 VAL THR ARG ASP GLN PRO PHE THR PHE GLU ASP GLY SER SEQRES 8 B 227 THR ALA CYS MET PRO ALA MET ARG PRO LYS GLY TYR LYS SEQRES 9 B 227 VAL PRO PHE ALA VAL GLY SER GLN ILE GLN ARG GLU LEU SEQRES 10 B 227 LYS LYS LEU GLU GLN ARG LEU THR ALA LYS ASN ASN LEU SEQRES 11 B 227 GLN GLY LEU SER ARG GLN GLU PHE ALA ALA ASN ALA ALA SEQRES 12 B 227 GLU VAL PHE THR ALA LEU ASP HIS ALA HIS PRO PHE ARG SEQRES 13 B 227 LYS GLY ASN GLY ARG THR GLN ARG MET PHE MET GLU LYS SEQRES 14 B 227 LEU GLY GLN ALA ALA GLY TYR LYS ILE ASP PHE SER LEU SEQRES 15 B 227 ILE THR LYS GLU ARG MET THR TYR ALA SER ILE GLU ALA SEQRES 16 B 227 MET GLN HIS ASN ASN PRO GLU PRO MET LYS ASP LEU PHE SEQRES 17 B 227 GLU ASP ILE THR HIS PRO GLN LYS SER LEU LEU LEU LYS SEQRES 18 B 227 GLU PHE ILE SER GLN MET HET CL A 301 1 HET BR A 302 1 HET IOD A 303 1 HET IOD A 304 1 HET IOD A 305 1 HET IOD A 306 1 HET IOD A 307 1 HET IOD A 308 1 HET CL B 301 1 HET IOD B 302 1 HET IOD B 303 1 HET IOD B 304 1 HET IOD B 305 1 HET IOD B 306 1 HETNAM CL CHLORIDE ION HETNAM BR BROMIDE ION HETNAM IOD IODIDE ION FORMUL 3 CL 2(CL 1-) FORMUL 4 BR BR 1- FORMUL 5 IOD 11(I 1-) FORMUL 17 HOH *325(H2 O) HELIX 1 1 HIS A 0 PHE A 7 5 8 HELIX 2 2 ASN A 22 ARG A 42 1 21 HELIX 3 3 ASP A 51 HIS A 64 1 14 HELIX 4 4 ARG A 92 TYR A 96 5 5 HELIX 5 5 SER A 104 LYS A 120 1 17 HELIX 6 6 ASN A 121 GLN A 124 5 4 HELIX 7 7 SER A 127 HIS A 146 1 20 HELIX 8 8 GLY A 151 ALA A 167 1 17 HELIX 9 9 PHE A 173 ILE A 176 5 4 HELIX 10 10 THR A 177 HIS A 191 1 15 HELIX 11 11 PRO A 194 ILE A 204 1 11 HELIX 12 12 GLN A 208 SER A 218 1 11 HELIX 13 13 MET B 2 PHE B 7 5 6 HELIX 14 14 ASN B 22 ARG B 42 1 21 HELIX 15 15 ASP B 51 HIS B 64 1 14 HELIX 16 16 ARG B 92 TYR B 96 5 5 HELIX 17 17 SER B 104 LYS B 120 1 17 HELIX 18 18 ASN B 121 GLN B 124 5 4 HELIX 19 19 SER B 127 HIS B 146 1 20 HELIX 20 20 GLY B 151 ALA B 167 1 17 HELIX 21 21 PHE B 173 ILE B 176 5 4 HELIX 22 22 THR B 177 GLN B 190 1 14 HELIX 23 23 PRO B 194 ILE B 204 1 11 HELIX 24 24 GLN B 208 GLN B 219 1 12 SHEET 1 A 2 PHE A 78 THR A 79 0 SHEET 2 A 2 THR A 85 ALA A 86 -1 O ALA A 86 N PHE A 78 SHEET 1 B 2 TYR A 169 ILE A 171 0 SHEET 2 B 2 THR A 205 PRO A 207 -1 O HIS A 206 N LYS A 170 SHEET 1 C 2 PHE B 78 THR B 79 0 SHEET 2 C 2 THR B 85 ALA B 86 -1 O ALA B 86 N PHE B 78 SHEET 1 D 2 TYR B 169 ILE B 171 0 SHEET 2 D 2 THR B 205 PRO B 207 -1 O HIS B 206 N LYS B 170 SITE 1 AC1 2 LYS A 9 HOH A 563 SITE 1 AC2 2 PRO A 93 HOH A 516 SITE 1 AC3 4 GLY A 151 ASN A 152 HOH A 485 HOH A 573 SITE 1 AC4 5 GLY A 151 GLY A 153 ARG A 154 HOH A 485 SITE 2 AC4 5 HOH A 573 SITE 1 AC5 1 LYS B 9 SITE 1 AC6 1 PRO B 93 SITE 1 AC7 1 HOH B 481 SITE 1 AC8 5 LYS B 150 GLY B 151 ASN B 152 HOH B 429 SITE 2 AC8 5 HOH B 541 SITE 1 AC9 3 GLY B 151 GLY B 153 ARG B 154 CRYST1 57.560 43.630 88.760 90.00 91.53 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017373 0.000000 0.000464 0.00000 SCALE2 0.000000 0.022920 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011270 0.00000