HEADER HYDROLASE 25-JUL-13 4LUG TITLE CRYSTAL STRUCTURE OF INORGANIC PYROPHOSPHATASE PPA1 FROM ARABIDOPSIS TITLE 2 THALIANA COMPND MOL_ID: 1; COMPND 2 MOLECULE: INORGANIC PYROPHOSPHATASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 33-212; COMPND 5 SYNONYM: AT1G01050/T25K16_5; COMPND 6 EC: 3.6.1.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ARABIDOPSIS THALIANA; SOURCE 3 ORGANISM_COMMON: MOUSE-EAR CRESS; SOURCE 4 ORGANISM_TAXID: 3702; SOURCE 5 GENE: PPA1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG48 KEYWDS HYDROLYSIS OF PYROPHOSPHATE, MAGNESIUM ION BINDING, METAL BINDING, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.GRZECHOWIAK,M.RUSZKOWSKI,M.SIKORSKI,M.JASKOLSKI REVDAT 2 08-NOV-23 4LUG 1 REMARK LINK REVDAT 1 30-JUL-14 4LUG 0 JRNL AUTH M.GRZECHOWIAK,M.RUSZKOWSKI,M.SIKORSKI,M.JASKOLSKI JRNL TITL CRYSTAL STRUCTURE OF INORGANIC PYROPHOSPHATASE PPA1 FROM JRNL TITL 2 ARABIDOPSIS THALIANA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.SCHULZE,A.MANT,J.KOSSMANN,J.R.LLOYD REMARK 1 TITL IDENTIFICATION OF AN ARABIDOPSIS INORGANIC PYROPHOSPHATASE REMARK 1 TITL 2 CAPABLE OF BEING IMPORTED INTO CHLOROPLASTS REMARK 1 REF FEBS LETT. V. 565 101 2004 REMARK 1 REFN ISSN 0014-5793 REMARK 1 PMID 15135060 REMARK 1 DOI 10.1016/J.FEBSLET.2004.03.080 REMARK 1 REFERENCE 2 REMARK 1 AUTH E.NAVARRO-DE LA SANCHA,M.P.COELLO-COUTINO, REMARK 1 AUTH 2 L.G.VALENCIA-TURCOTTE,E.E.HERNANDEZ-DOMINGUEZ,G.TREJO-YEPES, REMARK 1 AUTH 3 R.RODRIGUEZ-SOTRES REMARK 1 TITL CHARACTERIZATION OF TWO SOLUBLE INORGANIC PYROPHOSPHATASES REMARK 1 TITL 2 FROM ARABIDOPSIS THALIANA REMARK 1 REF PLANT SCI. V. 172 796 2007 REMARK 1 REFN ISSN 0168-9452 REMARK 1 DOI 10.1016/J.PLANTSCI.2006.12.011 REMARK 2 REMARK 2 RESOLUTION. 1.93 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.1_1168 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.93 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.01 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 32971 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.156 REMARK 3 FREE R VALUE : 0.200 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.050 REMARK 3 FREE R VALUE TEST SET COUNT : 1005 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 41.0200 - 3.6900 1.00 4573 143 0.1370 0.1680 REMARK 3 2 3.6900 - 2.9300 1.00 4555 144 0.1550 0.1980 REMARK 3 3 2.9300 - 2.5600 1.00 4593 144 0.1660 0.2230 REMARK 3 4 2.5600 - 2.3600 1.00 4569 144 0.1620 0.2260 REMARK 3 5 2.3300 - 2.1600 1.00 4566 144 0.1630 0.2100 REMARK 3 6 2.1600 - 2.0300 1.00 4568 143 0.1870 0.2460 REMARK 3 7 2.0300 - 1.9300 0.98 4542 143 0.2210 0.2680 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.210 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 40.84 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 44.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.019 2925 REMARK 3 ANGLE : 1.396 3995 REMARK 3 CHIRALITY : 0.088 433 REMARK 3 PLANARITY : 0.008 514 REMARK 3 DIHEDRAL : 15.371 1109 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 33:65 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.2653 21.8880 84.4579 REMARK 3 T TENSOR REMARK 3 T11: 0.2569 T22: 0.2861 REMARK 3 T33: 0.3369 T12: 0.0124 REMARK 3 T13: -0.1211 T23: 0.0130 REMARK 3 L TENSOR REMARK 3 L11: 1.7788 L22: 3.0605 REMARK 3 L33: 3.9580 L12: 0.7300 REMARK 3 L13: 0.8371 L23: 1.4941 REMARK 3 S TENSOR REMARK 3 S11: 0.0754 S12: 0.3002 S13: -0.1424 REMARK 3 S21: -0.5832 S22: -0.0007 S23: 0.4101 REMARK 3 S31: 0.0343 S32: -0.2818 S33: -0.0399 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 66:77 ) REMARK 3 ORIGIN FOR THE GROUP (A): 33.1493 33.6699 84.0042 REMARK 3 T TENSOR REMARK 3 T11: 0.4551 T22: 0.3764 REMARK 3 T33: 0.3336 T12: 0.0524 REMARK 3 T13: -0.0412 T23: 0.0795 REMARK 3 L TENSOR REMARK 3 L11: 2.3302 L22: 3.6118 REMARK 3 L33: 7.8900 L12: 0.2757 REMARK 3 L13: 0.1576 L23: 2.1219 REMARK 3 S TENSOR REMARK 3 S11: 0.0326 S12: 0.5916 S13: 0.1291 REMARK 3 S21: -0.8099 S22: -0.2210 S23: 0.3257 REMARK 3 S31: -0.8481 S32: -0.7606 S33: 0.0177 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 78:102 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.0760 28.1005 88.2725 REMARK 3 T TENSOR REMARK 3 T11: 0.4000 T22: 0.3775 REMARK 3 T33: 0.4361 T12: 0.1063 REMARK 3 T13: -0.1119 T23: 0.0341 REMARK 3 L TENSOR REMARK 3 L11: 1.2314 L22: 2.3528 REMARK 3 L33: 3.1264 L12: 0.2951 REMARK 3 L13: 0.5250 L23: 1.0124 REMARK 3 S TENSOR REMARK 3 S11: 0.0611 S12: 0.1846 S13: 0.0436 REMARK 3 S21: -0.6944 S22: -0.1569 S23: 0.6388 REMARK 3 S31: -0.6940 S32: -0.5584 S33: 0.0271 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 103:142 ) REMARK 3 ORIGIN FOR THE GROUP (A): 21.9852 21.9233 90.7669 REMARK 3 T TENSOR REMARK 3 T11: 0.2992 T22: 0.4209 REMARK 3 T33: 0.4236 T12: -0.0213 REMARK 3 T13: -0.1118 T23: 0.0427 REMARK 3 L TENSOR REMARK 3 L11: 3.1233 L22: 2.0205 REMARK 3 L33: 3.5074 L12: -0.0721 REMARK 3 L13: -0.2889 L23: 1.1716 REMARK 3 S TENSOR REMARK 3 S11: 0.1009 S12: 0.1689 S13: 0.1544 REMARK 3 S21: -0.2678 S22: -0.1199 S23: 0.4573 REMARK 3 S31: -0.2081 S32: -0.7195 S33: 0.0074 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 143:158 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.8414 10.1705 97.2760 REMARK 3 T TENSOR REMARK 3 T11: 0.3480 T22: 0.5697 REMARK 3 T33: 0.7056 T12: -0.1964 REMARK 3 T13: -0.0183 T23: 0.0055 REMARK 3 L TENSOR REMARK 3 L11: 3.1175 L22: 0.8596 REMARK 3 L33: 1.7238 L12: -1.4841 REMARK 3 L13: -1.2739 L23: 1.0356 REMARK 3 S TENSOR REMARK 3 S11: 0.0229 S12: -0.3317 S13: -0.8377 REMARK 3 S21: 0.2082 S22: -0.0485 S23: 1.1197 REMARK 3 S31: 0.4161 S32: -0.4726 S33: 0.0947 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 159:184 ) REMARK 3 ORIGIN FOR THE GROUP (A): 17.0990 31.7727 99.1535 REMARK 3 T TENSOR REMARK 3 T11: 0.3796 T22: 0.5586 REMARK 3 T33: 0.5223 T12: 0.1328 REMARK 3 T13: -0.0418 T23: 0.0600 REMARK 3 L TENSOR REMARK 3 L11: 3.9181 L22: 3.5052 REMARK 3 L33: 3.5463 L12: 0.2359 REMARK 3 L13: 0.2784 L23: 1.0108 REMARK 3 S TENSOR REMARK 3 S11: 0.1854 S12: -0.0533 S13: 0.6106 REMARK 3 S21: -0.1019 S22: -0.0218 S23: 1.0081 REMARK 3 S31: -0.6405 S32: -1.1033 S33: 0.1059 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN A AND (RESSEQ 185:207 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.8406 21.0314 78.9806 REMARK 3 T TENSOR REMARK 3 T11: 0.4688 T22: 0.8376 REMARK 3 T33: 0.7748 T12: 0.1197 REMARK 3 T13: -0.3497 T23: -0.0267 REMARK 3 L TENSOR REMARK 3 L11: 1.8114 L22: 2.1428 REMARK 3 L33: 1.7466 L12: -0.4312 REMARK 3 L13: 0.2938 L23: 1.5916 REMARK 3 S TENSOR REMARK 3 S11: 0.0311 S12: 0.5486 S13: -0.0518 REMARK 3 S21: -0.8106 S22: -0.3832 S23: 0.7748 REMARK 3 S31: -0.4840 S32: -0.7364 S33: -0.2374 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 33:77 ) REMARK 3 ORIGIN FOR THE GROUP (A): 11.4402 1.5281 66.9224 REMARK 3 T TENSOR REMARK 3 T11: 0.1803 T22: 0.2539 REMARK 3 T33: 0.2574 T12: -0.0172 REMARK 3 T13: -0.0511 T23: -0.0612 REMARK 3 L TENSOR REMARK 3 L11: 1.8362 L22: 2.5034 REMARK 3 L33: 3.5801 L12: -0.6339 REMARK 3 L13: 0.9580 L23: -1.3302 REMARK 3 S TENSOR REMARK 3 S11: 0.1133 S12: -0.1231 S13: -0.0712 REMARK 3 S21: 0.3295 S22: 0.0611 S23: -0.2230 REMARK 3 S31: -0.0802 S32: 0.2883 S33: -0.1401 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 78:102 ) REMARK 3 ORIGIN FOR THE GROUP (A): 16.8146 4.6876 63.0461 REMARK 3 T TENSOR REMARK 3 T11: 0.2002 T22: 0.3143 REMARK 3 T33: 0.3146 T12: -0.0412 REMARK 3 T13: -0.0079 T23: -0.0633 REMARK 3 L TENSOR REMARK 3 L11: 0.9376 L22: 2.7037 REMARK 3 L33: 4.7751 L12: -0.6583 REMARK 3 L13: 1.4154 L23: -1.7043 REMARK 3 S TENSOR REMARK 3 S11: -0.0059 S12: -0.0274 S13: 0.1087 REMARK 3 S21: 0.3229 S22: 0.0094 S23: -0.4426 REMARK 3 S31: -0.4406 S32: 0.4683 S33: -0.0157 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 103:158 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.8091 -5.0660 58.4906 REMARK 3 T TENSOR REMARK 3 T11: 0.2208 T22: 0.4353 REMARK 3 T33: 0.3787 T12: 0.0721 REMARK 3 T13: -0.0672 T23: -0.0725 REMARK 3 L TENSOR REMARK 3 L11: 4.2396 L22: 2.6260 REMARK 3 L33: 3.5395 L12: 0.4000 REMARK 3 L13: -0.4600 L23: -0.5795 REMARK 3 S TENSOR REMARK 3 S11: 0.0154 S12: 0.3789 S13: -0.1692 REMARK 3 S21: -0.0036 S22: 0.0766 S23: -0.6159 REMARK 3 S31: 0.0911 S32: 0.8019 S33: -0.0605 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 159:184 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.7589 8.4684 52.0335 REMARK 3 T TENSOR REMARK 3 T11: 0.3083 T22: 0.6688 REMARK 3 T33: 0.4631 T12: -0.1196 REMARK 3 T13: 0.0411 T23: -0.0615 REMARK 3 L TENSOR REMARK 3 L11: 8.0297 L22: 3.1296 REMARK 3 L33: 3.4508 L12: -3.5279 REMARK 3 L13: 0.4900 L23: -0.8946 REMARK 3 S TENSOR REMARK 3 S11: 0.1293 S12: 0.2209 S13: 0.7689 REMARK 3 S21: -0.0934 S22: 0.0001 S23: -0.9282 REMARK 3 S31: -0.5755 S32: 1.2242 S33: -0.1120 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN B AND (RESSEQ 185:208 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.1895 -2.0881 72.8298 REMARK 3 T TENSOR REMARK 3 T11: 0.3254 T22: 0.5908 REMARK 3 T33: 0.5706 T12: 0.0473 REMARK 3 T13: -0.2590 T23: -0.0539 REMARK 3 L TENSOR REMARK 3 L11: 2.7117 L22: 2.4400 REMARK 3 L33: 1.0214 L12: 0.7017 REMARK 3 L13: -0.6320 L23: -0.9610 REMARK 3 S TENSOR REMARK 3 S11: 0.0274 S12: -0.1102 S13: -0.0226 REMARK 3 S21: 0.5488 S22: -0.1129 S23: -0.6310 REMARK 3 S31: 0.0037 S32: 0.7649 S33: 0.1537 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGEN ATOMS WERE ADDED AT RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4LUG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 06-AUG-13. REMARK 100 THE DEPOSITION ID IS D_1000081100. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-NOV-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91841 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32974 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.930 REMARK 200 RESOLUTION RANGE LOW (A) : 41.010 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.04300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 18.7600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.93 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.59800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.040 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.2 REMARK 200 STARTING MODEL: 1TWL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SUCCINIC ACID, 15%(W/V) PEG 3350, REMARK 280 PH 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 292.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: H 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 X+2/3,Y+1/3,Z+1/3 REMARK 290 5555 -Y+2/3,X-Y+1/3,Z+1/3 REMARK 290 6555 -X+Y+2/3,-X+1/3,Z+1/3 REMARK 290 7555 X+1/3,Y+2/3,Z+2/3 REMARK 290 8555 -Y+1/3,X-Y+2/3,Z+2/3 REMARK 290 9555 -X+Y+1/3,-X+2/3,Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 41.01000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 23.67713 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 58.36000 REMARK 290 SMTRY1 5 -0.500000 -0.866025 0.000000 41.01000 REMARK 290 SMTRY2 5 0.866025 -0.500000 0.000000 23.67713 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 58.36000 REMARK 290 SMTRY1 6 -0.500000 0.866025 0.000000 41.01000 REMARK 290 SMTRY2 6 -0.866025 -0.500000 0.000000 23.67713 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 58.36000 REMARK 290 SMTRY1 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 47.35427 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 116.72000 REMARK 290 SMTRY1 8 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 8 0.866025 -0.500000 0.000000 47.35427 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 116.72000 REMARK 290 SMTRY1 9 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 -0.500000 0.000000 47.35427 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 116.72000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -69.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 82.02000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 41.01000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 71.03140 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -69.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 493 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 499 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 HIS A 208 REMARK 465 THR A 209 REMARK 465 LEU A 210 REMARK 465 ARG A 211 REMARK 465 ARG A 212 REMARK 465 THR B 209 REMARK 465 LEU B 210 REMARK 465 ARG B 211 REMARK 465 ARG B 212 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 301 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 98 OD2 REMARK 620 2 ASP A 103 OD2 152.6 REMARK 620 3 ASP A 103 OD1 144.0 51.5 REMARK 620 4 ASP A 135 OD1 85.6 71.1 121.7 REMARK 620 5 HOH A 433 O 84.7 121.9 75.6 159.1 REMARK 620 6 HOH A 440 O 69.1 103.2 80.0 106.4 87.3 REMARK 620 7 HOH A 459 O 96.8 95.6 107.6 85.6 77.3 160.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA B 301 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 98 OD2 REMARK 620 2 ASP B 103 OD2 148.6 REMARK 620 3 ASP B 103 OD1 160.1 47.9 REMARK 620 4 HOH B 419 O 95.2 113.4 77.0 REMARK 620 5 HOH B 424 O 71.1 114.7 91.6 98.4 REMARK 620 6 HOH B 474 O 65.4 84.3 123.5 159.4 82.4 REMARK 620 7 HOH B 498 O 100.5 78.2 94.4 71.2 166.4 104.3 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3EMJ RELATED DB: PDB REMARK 900 2.2 A CRYSTAL STRUCTURE OF INORGANIC PYROPHOSPHATASE FROM REMARK 900 RICKETTSIA PROWAZEKII (P21 FORM) REMARK 900 RELATED ID: 3TR4 RELATED DB: PDB REMARK 900 STRUCTURE OF AN INORGANIC PYROPHOSPHATASE (PPA) FROM COXIELLA REMARK 900 BURNETII REMARK 900 RELATED ID: 3I4Q RELATED DB: PDB REMARK 900 STRUCTURE OF A PUTATIVE INORGANIC PYROPHOSPHATASE FROM THE OIL- REMARK 900 DEGRADING BACTERIUM OLEISPIRA ANTARCTICA REMARK 900 RELATED ID: 1YGZ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF INORGANIC PYROPHOSPHATASE FROM HELICOBACTER REMARK 900 PYLORI REMARK 900 RELATED ID: 3FQ3 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF INORGANIC PHOSPHATASE FROM BRUCELLA MELITENSIS REMARK 900 RELATED ID: 1TWL RELATED DB: PDB REMARK 900 INORGANIC PYROPHOSPHATASE FROM PYROCOCCUS FURIOSUS DBREF 4LUG A 33 212 UNP Q93V56 Q93V56_ARATH 33 212 DBREF 4LUG B 33 212 UNP Q93V56 Q93V56_ARATH 33 212 SEQRES 1 A 180 ALA HIS PRO TRP HIS ASP LEU GLU ILE GLY PRO GLY ALA SEQRES 2 A 180 PRO GLN ILE PHE ASN VAL VAL VAL GLU ILE THR LYS GLY SEQRES 3 A 180 SER LYS VAL LYS TYR GLU LEU ASP LYS LYS THR GLY LEU SEQRES 4 A 180 ILE LYS VAL ASP ARG ILE LEU TYR SER SER VAL VAL TYR SEQRES 5 A 180 PRO HIS ASN TYR GLY PHE VAL PRO ARG THR LEU CYS GLU SEQRES 6 A 180 ASP ASN ASP PRO ILE ASP VAL LEU VAL ILE MET GLN GLU SEQRES 7 A 180 PRO VAL LEU PRO GLY CYS PHE LEU ARG ALA ARG ALA ILE SEQRES 8 A 180 GLY LEU MET PRO MET ILE ASP GLN GLY GLU LYS ASP ASP SEQRES 9 A 180 LYS ILE ILE ALA VAL CYS VAL ASP ASP PRO GLU TYR LYS SEQRES 10 A 180 HIS TYR THR ASP ILE LYS GLU LEU PRO PRO HIS ARG LEU SEQRES 11 A 180 SER GLU ILE ARG ARG PHE PHE GLU ASP TYR LYS LYS ASN SEQRES 12 A 180 GLU ASN LYS GLU VAL ALA VAL ASN ASP PHE LEU PRO SER SEQRES 13 A 180 GLU SER ALA VAL GLU ALA ILE GLN TYR SER MET ASP LEU SEQRES 14 A 180 TYR ALA GLU TYR ILE LEU HIS THR LEU ARG ARG SEQRES 1 B 180 ALA HIS PRO TRP HIS ASP LEU GLU ILE GLY PRO GLY ALA SEQRES 2 B 180 PRO GLN ILE PHE ASN VAL VAL VAL GLU ILE THR LYS GLY SEQRES 3 B 180 SER LYS VAL LYS TYR GLU LEU ASP LYS LYS THR GLY LEU SEQRES 4 B 180 ILE LYS VAL ASP ARG ILE LEU TYR SER SER VAL VAL TYR SEQRES 5 B 180 PRO HIS ASN TYR GLY PHE VAL PRO ARG THR LEU CYS GLU SEQRES 6 B 180 ASP ASN ASP PRO ILE ASP VAL LEU VAL ILE MET GLN GLU SEQRES 7 B 180 PRO VAL LEU PRO GLY CYS PHE LEU ARG ALA ARG ALA ILE SEQRES 8 B 180 GLY LEU MET PRO MET ILE ASP GLN GLY GLU LYS ASP ASP SEQRES 9 B 180 LYS ILE ILE ALA VAL CYS VAL ASP ASP PRO GLU TYR LYS SEQRES 10 B 180 HIS TYR THR ASP ILE LYS GLU LEU PRO PRO HIS ARG LEU SEQRES 11 B 180 SER GLU ILE ARG ARG PHE PHE GLU ASP TYR LYS LYS ASN SEQRES 12 B 180 GLU ASN LYS GLU VAL ALA VAL ASN ASP PHE LEU PRO SER SEQRES 13 B 180 GLU SER ALA VAL GLU ALA ILE GLN TYR SER MET ASP LEU SEQRES 14 B 180 TYR ALA GLU TYR ILE LEU HIS THR LEU ARG ARG HET NA A 301 1 HET NA B 301 1 HETNAM NA SODIUM ION FORMUL 3 NA 2(NA 1+) FORMUL 5 HOH *173(H2 O) HELIX 1 1 ASP A 153 LEU A 157 5 5 HELIX 2 2 PRO A 158 TYR A 172 1 15 HELIX 3 3 LYS A 173 ASN A 177 5 5 HELIX 4 4 SER A 188 ILE A 206 1 19 HELIX 5 5 ASP B 153 LEU B 157 5 5 HELIX 6 6 PRO B 158 TYR B 172 1 15 HELIX 7 7 LYS B 173 ASN B 177 5 5 HELIX 8 8 SER B 188 ILE B 206 1 19 SHEET 1 A 7 LEU A 186 PRO A 187 0 SHEET 2 A 7 PHE A 117 MET A 126 -1 N LEU A 125 O LEU A 186 SHEET 3 A 7 LYS A 137 CYS A 142 -1 O LYS A 137 N MET A 126 SHEET 4 A 7 ASP A 103 ILE A 107 1 N LEU A 105 O ILE A 138 SHEET 5 A 7 ASN A 87 PHE A 90 -1 N ASN A 87 O VAL A 106 SHEET 6 A 7 ILE A 48 ILE A 55 -1 N GLU A 54 O TYR A 88 SHEET 7 A 7 PHE A 117 MET A 126 -1 O ALA A 120 N PHE A 49 SHEET 1 B 2 VAL A 61 LEU A 65 0 SHEET 2 B 2 ILE A 72 ILE A 77 -1 O LYS A 73 N GLU A 64 SHEET 1 C 3 GLU A 133 LYS A 134 0 SHEET 2 C 3 MET A 128 ASP A 130 -1 N ASP A 130 O GLU A 133 SHEET 3 C 3 VAL A 180 VAL A 182 -1 O ALA A 181 N ILE A 129 SHEET 1 D 7 LEU B 186 PRO B 187 0 SHEET 2 D 7 PHE B 117 MET B 126 -1 N LEU B 125 O LEU B 186 SHEET 3 D 7 LYS B 137 CYS B 142 -1 O ILE B 139 N GLY B 124 SHEET 4 D 7 ASP B 103 ILE B 107 1 N LEU B 105 O ILE B 138 SHEET 5 D 7 ASN B 87 PHE B 90 -1 N ASN B 87 O VAL B 106 SHEET 6 D 7 ILE B 48 ILE B 55 -1 N GLU B 54 O TYR B 88 SHEET 7 D 7 PHE B 117 MET B 126 -1 O ALA B 120 N PHE B 49 SHEET 1 E 2 VAL B 61 LEU B 65 0 SHEET 2 E 2 ILE B 72 ILE B 77 -1 O LYS B 73 N GLU B 64 SHEET 1 F 3 GLU B 133 LYS B 134 0 SHEET 2 F 3 MET B 128 ASP B 130 -1 N ASP B 130 O GLU B 133 SHEET 3 F 3 VAL B 180 VAL B 182 -1 O ALA B 181 N ILE B 129 LINK OD2 ASP A 98 NA NA A 301 1555 1555 2.59 LINK OD2 ASP A 103 NA NA A 301 1555 1555 2.33 LINK OD1 ASP A 103 NA NA A 301 1555 1555 2.69 LINK OD1 ASP A 135 NA NA A 301 1555 1555 2.77 LINK NA NA A 301 O HOH A 433 1555 1555 2.35 LINK NA NA A 301 O HOH A 440 1555 1555 2.32 LINK NA NA A 301 O HOH A 459 1555 1555 2.14 LINK OD2 ASP B 98 NA NA B 301 1555 1555 2.63 LINK OD2 ASP B 103 NA NA B 301 1555 1555 2.57 LINK OD1 ASP B 103 NA NA B 301 1555 1555 2.75 LINK NA NA B 301 O HOH B 419 1555 1555 2.34 LINK NA NA B 301 O HOH B 424 1555 1555 2.40 LINK NA NA B 301 O HOH B 474 1555 1555 2.47 LINK NA NA B 301 O HOH B 498 1555 1555 2.42 CISPEP 1 ALA A 45 PRO A 46 0 5.43 CISPEP 2 ALA B 45 PRO B 46 0 12.44 SITE 1 AC1 6 ASP A 98 ASP A 103 ASP A 135 HOH A 433 SITE 2 AC1 6 HOH A 440 HOH A 459 SITE 1 AC2 7 ASP B 98 ASP B 103 ASP B 135 HOH B 419 SITE 2 AC2 7 HOH B 424 HOH B 474 HOH B 498 CRYST1 82.020 82.020 175.080 90.00 90.00 120.00 H 3 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012192 0.007039 0.000000 0.00000 SCALE2 0.000000 0.014078 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005712 0.00000