HEADER HYDROLASE/HYDROLASE INHIBITOR 25-JUL-13 4LV1 TITLE AMPC BETA-LACTAMASE IN COMPLEX WITH [1-(3-CHLOROPHENYL)-1H-PYRAZOL-4- TITLE 2 YL] BORONIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CEPHALOSPORINASE; COMPND 5 EC: 3.5.2.6; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: AMPA, AMPC, B4150, JW4111; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: JM109; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: POGO295 KEYWDS AMPC BETA-LACTAMASE, CLASS C, HYDROLASE, BORONIC ACID, COVALENT KEYWDS 2 INHIBITOR, HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR N.LONDON,O.EIDAM,B.K.SHOICHET REVDAT 4 20-SEP-23 4LV1 1 REMARK LINK REVDAT 3 26-NOV-14 4LV1 1 JRNL REVDAT 2 05-NOV-14 4LV1 1 JRNL REVDAT 1 30-JUL-14 4LV1 0 JRNL AUTH N.LONDON,R.M.MILLER,S.KRISHNAN,K.UCHIDA,J.J.IRWIN,O.EIDAM, JRNL AUTH 2 L.GIBOLD,P.CIMERMANCIC,R.BONNET,B.K.SHOICHET,J.TAUNTON JRNL TITL COVALENT DOCKING OF LARGE LIBRARIES FOR THE DISCOVERY OF JRNL TITL 2 CHEMICAL PROBES. JRNL REF NAT.CHEM.BIOL. V. 10 1066 2014 JRNL REFN ISSN 1552-4450 JRNL PMID 25344815 JRNL DOI 10.1038/NCHEMBIO.1666 REMARK 2 REMARK 2 RESOLUTION. 1.74 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8_1069 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.74 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.55 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 81114 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.171 REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.195 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.700 REMARK 3 FREE R VALUE TEST SET COUNT : 3001 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.5490 - 4.7986 1.00 3828 140 0.1561 0.1894 REMARK 3 2 4.7986 - 3.8094 1.00 3740 168 0.1307 0.1596 REMARK 3 3 3.8094 - 3.3281 1.00 3728 140 0.1458 0.1652 REMARK 3 4 3.3281 - 3.0238 1.00 3735 152 0.1731 0.1911 REMARK 3 5 3.0238 - 2.8071 1.00 3713 167 0.1843 0.2028 REMARK 3 6 2.8071 - 2.6417 1.00 3698 158 0.1887 0.1980 REMARK 3 7 2.6417 - 2.5094 1.00 3686 141 0.1812 0.2127 REMARK 3 8 2.5094 - 2.4001 1.00 3778 132 0.1727 0.1878 REMARK 3 9 2.4001 - 2.3077 1.00 3675 149 0.1763 0.2207 REMARK 3 10 2.3077 - 2.2281 1.00 3720 128 0.1692 0.1794 REMARK 3 11 2.2281 - 2.1584 1.00 3728 145 0.1708 0.2083 REMARK 3 12 2.1584 - 2.0968 1.00 3694 161 0.1696 0.1966 REMARK 3 13 2.0968 - 2.0416 1.00 3691 143 0.1728 0.2138 REMARK 3 14 2.0416 - 1.9917 1.00 3734 135 0.1877 0.2397 REMARK 3 15 1.9917 - 1.9465 1.00 3694 153 0.1995 0.2147 REMARK 3 16 1.9465 - 1.9050 1.00 3721 121 0.1959 0.2264 REMARK 3 17 1.9050 - 1.8669 1.00 3740 95 0.2073 0.2438 REMARK 3 18 1.8669 - 1.8317 1.00 3714 137 0.2043 0.2415 REMARK 3 19 1.8317 - 1.7990 1.00 3704 139 0.2199 0.2361 REMARK 3 20 1.7990 - 1.7685 1.00 3687 156 0.2435 0.2559 REMARK 3 21 1.7685 - 1.7400 1.00 3705 141 0.2543 0.2874 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.240 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 21.71 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.37 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 5784 REMARK 3 ANGLE : 1.498 7941 REMARK 3 CHIRALITY : 0.107 864 REMARK 3 PLANARITY : 0.008 1025 REMARK 3 DIHEDRAL : 13.674 2059 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 4:83) REMARK 3 ORIGIN FOR THE GROUP (A): 23.0039 -9.5091 23.8817 REMARK 3 T TENSOR REMARK 3 T11: 0.1471 T22: 0.0893 REMARK 3 T33: 0.0962 T12: -0.0435 REMARK 3 T13: -0.0036 T23: -0.0168 REMARK 3 L TENSOR REMARK 3 L11: 1.2430 L22: 1.2325 REMARK 3 L33: 1.1686 L12: 0.5895 REMARK 3 L13: -0.2843 L23: -0.1298 REMARK 3 S TENSOR REMARK 3 S11: 0.0366 S12: -0.1879 S13: -0.0294 REMARK 3 S21: 0.1438 S22: -0.0632 S23: 0.0778 REMARK 3 S31: 0.2294 S32: -0.1116 S33: 0.0265 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 84:182) REMARK 3 ORIGIN FOR THE GROUP (A): 38.5776 8.5766 7.4239 REMARK 3 T TENSOR REMARK 3 T11: 0.1235 T22: 0.1084 REMARK 3 T33: 0.1113 T12: -0.0269 REMARK 3 T13: 0.0017 T23: 0.0137 REMARK 3 L TENSOR REMARK 3 L11: 1.7228 L22: 2.1234 REMARK 3 L33: 1.5671 L12: -0.0362 REMARK 3 L13: -0.4537 L23: -0.6008 REMARK 3 S TENSOR REMARK 3 S11: -0.0091 S12: 0.2080 S13: 0.1263 REMARK 3 S21: -0.2913 S22: -0.0158 S23: -0.1291 REMARK 3 S31: -0.0606 S32: 0.0635 S33: 0.0242 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 183:361) REMARK 3 ORIGIN FOR THE GROUP (A): 30.7561 -1.9343 22.8876 REMARK 3 T TENSOR REMARK 3 T11: 0.1045 T22: 0.0616 REMARK 3 T33: 0.0798 T12: -0.0051 REMARK 3 T13: -0.0075 T23: 0.0054 REMARK 3 L TENSOR REMARK 3 L11: 2.1741 L22: 1.5663 REMARK 3 L33: 1.3174 L12: 1.0482 REMARK 3 L13: 0.0909 L23: -0.0312 REMARK 3 S TENSOR REMARK 3 S11: 0.0579 S12: -0.2133 S13: -0.0215 REMARK 3 S21: 0.1646 S22: -0.1044 S23: -0.0573 REMARK 3 S31: 0.0737 S32: 0.0252 S33: 0.0365 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN B AND RESID 4:66) REMARK 3 ORIGIN FOR THE GROUP (A): 84.1185 -13.1717 21.6382 REMARK 3 T TENSOR REMARK 3 T11: 0.2409 T22: 0.4501 REMARK 3 T33: 0.2292 T12: 0.1498 REMARK 3 T13: 0.0359 T23: -0.0030 REMARK 3 L TENSOR REMARK 3 L11: 1.7090 L22: 1.4125 REMARK 3 L33: 1.2158 L12: -0.3823 REMARK 3 L13: -0.0047 L23: -0.1893 REMARK 3 S TENSOR REMARK 3 S11: -0.1435 S12: 0.0158 S13: -0.2783 REMARK 3 S21: -0.0524 S22: 0.1284 S23: -0.1959 REMARK 3 S31: 0.5763 S32: 0.8330 S33: 0.0204 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN B AND RESID 67:182) REMARK 3 ORIGIN FOR THE GROUP (A): 64.2339 9.0107 35.9078 REMARK 3 T TENSOR REMARK 3 T11: 0.1284 T22: 0.1476 REMARK 3 T33: 0.0925 T12: -0.0342 REMARK 3 T13: 0.0037 T23: 0.0066 REMARK 3 L TENSOR REMARK 3 L11: 0.9891 L22: 1.6953 REMARK 3 L33: 1.5366 L12: -0.2232 REMARK 3 L13: -0.3517 L23: -0.0338 REMARK 3 S TENSOR REMARK 3 S11: -0.0278 S12: -0.2018 S13: 0.0279 REMARK 3 S21: 0.2541 S22: 0.0899 S23: 0.0967 REMARK 3 S31: -0.1270 S32: 0.1322 S33: -0.0550 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN B AND RESID 183:361) REMARK 3 ORIGIN FOR THE GROUP (A): 72.4179 -2.9629 23.4707 REMARK 3 T TENSOR REMARK 3 T11: 0.0926 T22: 0.1803 REMARK 3 T33: 0.1249 T12: -0.0324 REMARK 3 T13: -0.0007 T23: 0.0009 REMARK 3 L TENSOR REMARK 3 L11: 0.9516 L22: 1.7597 REMARK 3 L33: 1.8921 L12: -0.8365 REMARK 3 L13: -0.1267 L23: -0.1741 REMARK 3 S TENSOR REMARK 3 S11: -0.0477 S12: 0.0088 S13: -0.0529 REMARK 3 S21: -0.0735 S22: 0.0299 S23: -0.0009 REMARK 3 S31: 0.1646 S32: 0.2969 S33: 0.0129 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4LV1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-AUG-13. REMARK 100 THE DEPOSITION ID IS D_1000081121. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-SEP-12 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 8.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.11587 REMARK 200 MONOCHROMATOR : DOUBLE FLAT CRYSTAL, SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XSCALE REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 81119 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.740 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.04100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.5700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.74 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.79 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.53100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.370 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 1KE4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.54 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.7 M POTASSIUM PHOSPHATE, PH 8.8, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 59.29000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.77000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 59.29000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 38.77000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 21 CD OE1 OE2 REMARK 470 GLN A 22 CG CD OE1 NE2 REMARK 470 LYS A 24 CE NZ REMARK 470 LYS A 37 CG CD CE NZ REMARK 470 LYS A 99 CG CD CE NZ REMARK 470 LYS A 126 CE NZ REMARK 470 LYS A 197 NZ REMARK 470 ARG A 204 NE CZ NH1 NH2 REMARK 470 GLU A 205 CD OE1 OE2 REMARK 470 LYS A 207 CG CD CE NZ REMARK 470 LYS A 239 CE NZ REMARK 470 LYS A 246 CG CD CE NZ REMARK 470 LYS A 290 CD CE NZ REMARK 470 LYS A 299 CG CD CE NZ REMARK 470 LYS A 342 NZ REMARK 470 ARG B 14 NH1 NH2 REMARK 470 LYS B 24 CE NZ REMARK 470 LYS B 37 CG CD CE NZ REMARK 470 LYS B 50 CG CD CE NZ REMARK 470 LYS B 51 CD CE NZ REMARK 470 GLN B 52 CD OE1 NE2 REMARK 470 LYS B 99 NZ REMARK 470 LYS B 126 CG CD CE NZ REMARK 470 LYS B 164 CE NZ REMARK 470 LYS B 197 CE NZ REMARK 470 GLU B 205 CD OE1 OE2 REMARK 470 LYS B 207 CG CD CE NZ REMARK 470 LYS B 239 NZ REMARK 470 LYS B 246 CG CD CE NZ REMARK 470 LYS B 290 CE NZ REMARK 470 LYS B 299 CG CD CE NZ REMARK 470 GLU B 331 CG CD OE1 OE2 REMARK 470 GLU B 333 CD OE1 OE2 REMARK 470 LYS B 342 NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP B 87 OH TYR B 92 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 154 -66.22 -92.51 REMARK 500 VAL A 178 -58.90 -122.17 REMARK 500 TYR A 221 18.57 -159.76 REMARK 500 ALA A 307 119.03 -37.55 REMARK 500 ASN A 341 44.20 -99.44 REMARK 500 LYS B 126 -61.11 -126.19 REMARK 500 VAL B 178 -60.15 -123.99 REMARK 500 TYR B 221 22.69 -159.67 REMARK 500 ALA B 307 122.29 -38.60 REMARK 500 ASN B 341 45.33 -99.76 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NL9 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NL9 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NL9 B 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4LV0 RELATED DB: PDB REMARK 900 RELATED ID: 4LV2 RELATED DB: PDB REMARK 900 RELATED ID: 4LV3 RELATED DB: PDB DBREF 4LV1 A 4 361 UNP P00811 AMPC_ECOLI 20 377 DBREF 4LV1 B 4 361 UNP P00811 AMPC_ECOLI 20 377 SEQRES 1 A 358 ALA PRO GLN GLN ILE ASN ASP ILE VAL HIS ARG THR ILE SEQRES 2 A 358 THR PRO LEU ILE GLU GLN GLN LYS ILE PRO GLY MET ALA SEQRES 3 A 358 VAL ALA VAL ILE TYR GLN GLY LYS PRO TYR TYR PHE THR SEQRES 4 A 358 TRP GLY TYR ALA ASP ILE ALA LYS LYS GLN PRO VAL THR SEQRES 5 A 358 GLN GLN THR LEU PHE GLU LEU GLY SER VAL SER LYS THR SEQRES 6 A 358 PHE THR GLY VAL LEU GLY GLY ASP ALA ILE ALA ARG GLY SEQRES 7 A 358 GLU ILE LYS LEU SER ASP PRO THR THR LYS TYR TRP PRO SEQRES 8 A 358 GLU LEU THR ALA LYS GLN TRP ASN GLY ILE THR LEU LEU SEQRES 9 A 358 HIS LEU ALA THR TYR THR ALA GLY GLY LEU PRO LEU GLN SEQRES 10 A 358 VAL PRO ASP GLU VAL LYS SER SER SER ASP LEU LEU ARG SEQRES 11 A 358 PHE TYR GLN ASN TRP GLN PRO ALA TRP ALA PRO GLY THR SEQRES 12 A 358 GLN ARG LEU TYR ALA ASN SER SER ILE GLY LEU PHE GLY SEQRES 13 A 358 ALA LEU ALA VAL LYS PRO SER GLY LEU SER PHE GLU GLN SEQRES 14 A 358 ALA MET GLN THR ARG VAL PHE GLN PRO LEU LYS LEU ASN SEQRES 15 A 358 HIS THR TRP ILE ASN VAL PRO PRO ALA GLU GLU LYS ASN SEQRES 16 A 358 TYR ALA TRP GLY TYR ARG GLU GLY LYS ALA VAL HIS VAL SEQRES 17 A 358 SER PRO GLY ALA LEU ASP ALA GLU ALA TYR GLY VAL LYS SEQRES 18 A 358 SER THR ILE GLU ASP MET ALA ARG TRP VAL GLN SER ASN SEQRES 19 A 358 LEU LYS PRO LEU ASP ILE ASN GLU LYS THR LEU GLN GLN SEQRES 20 A 358 GLY ILE GLN LEU ALA GLN SER ARG TYR TRP GLN THR GLY SEQRES 21 A 358 ASP MET TYR GLN GLY LEU GLY TRP GLU MET LEU ASP TRP SEQRES 22 A 358 PRO VAL ASN PRO ASP SER ILE ILE ASN GLY SER ASP ASN SEQRES 23 A 358 LYS ILE ALA LEU ALA ALA ARG PRO VAL LYS ALA ILE THR SEQRES 24 A 358 PRO PRO THR PRO ALA VAL ARG ALA SER TRP VAL HIS LYS SEQRES 25 A 358 THR GLY ALA THR GLY GLY PHE GLY SER TYR VAL ALA PHE SEQRES 26 A 358 ILE PRO GLU LYS GLU LEU GLY ILE VAL MET LEU ALA ASN SEQRES 27 A 358 LYS ASN TYR PRO ASN PRO ALA ARG VAL ASP ALA ALA TRP SEQRES 28 A 358 GLN ILE LEU ASN ALA LEU GLN SEQRES 1 B 358 ALA PRO GLN GLN ILE ASN ASP ILE VAL HIS ARG THR ILE SEQRES 2 B 358 THR PRO LEU ILE GLU GLN GLN LYS ILE PRO GLY MET ALA SEQRES 3 B 358 VAL ALA VAL ILE TYR GLN GLY LYS PRO TYR TYR PHE THR SEQRES 4 B 358 TRP GLY TYR ALA ASP ILE ALA LYS LYS GLN PRO VAL THR SEQRES 5 B 358 GLN GLN THR LEU PHE GLU LEU GLY SER VAL SER LYS THR SEQRES 6 B 358 PHE THR GLY VAL LEU GLY GLY ASP ALA ILE ALA ARG GLY SEQRES 7 B 358 GLU ILE LYS LEU SER ASP PRO THR THR LYS TYR TRP PRO SEQRES 8 B 358 GLU LEU THR ALA LYS GLN TRP ASN GLY ILE THR LEU LEU SEQRES 9 B 358 HIS LEU ALA THR TYR THR ALA GLY GLY LEU PRO LEU GLN SEQRES 10 B 358 VAL PRO ASP GLU VAL LYS SER SER SER ASP LEU LEU ARG SEQRES 11 B 358 PHE TYR GLN ASN TRP GLN PRO ALA TRP ALA PRO GLY THR SEQRES 12 B 358 GLN ARG LEU TYR ALA ASN SER SER ILE GLY LEU PHE GLY SEQRES 13 B 358 ALA LEU ALA VAL LYS PRO SER GLY LEU SER PHE GLU GLN SEQRES 14 B 358 ALA MET GLN THR ARG VAL PHE GLN PRO LEU LYS LEU ASN SEQRES 15 B 358 HIS THR TRP ILE ASN VAL PRO PRO ALA GLU GLU LYS ASN SEQRES 16 B 358 TYR ALA TRP GLY TYR ARG GLU GLY LYS ALA VAL HIS VAL SEQRES 17 B 358 SER PRO GLY ALA LEU ASP ALA GLU ALA TYR GLY VAL LYS SEQRES 18 B 358 SER THR ILE GLU ASP MET ALA ARG TRP VAL GLN SER ASN SEQRES 19 B 358 LEU LYS PRO LEU ASP ILE ASN GLU LYS THR LEU GLN GLN SEQRES 20 B 358 GLY ILE GLN LEU ALA GLN SER ARG TYR TRP GLN THR GLY SEQRES 21 B 358 ASP MET TYR GLN GLY LEU GLY TRP GLU MET LEU ASP TRP SEQRES 22 B 358 PRO VAL ASN PRO ASP SER ILE ILE ASN GLY SER ASP ASN SEQRES 23 B 358 LYS ILE ALA LEU ALA ALA ARG PRO VAL LYS ALA ILE THR SEQRES 24 B 358 PRO PRO THR PRO ALA VAL ARG ALA SER TRP VAL HIS LYS SEQRES 25 B 358 THR GLY ALA THR GLY GLY PHE GLY SER TYR VAL ALA PHE SEQRES 26 B 358 ILE PRO GLU LYS GLU LEU GLY ILE VAL MET LEU ALA ASN SEQRES 27 B 358 LYS ASN TYR PRO ASN PRO ALA ARG VAL ASP ALA ALA TRP SEQRES 28 B 358 GLN ILE LEU ASN ALA LEU GLN HET NL9 A 401 15 HET NL9 A 402 30 HET PO4 A 403 5 HET PO4 A 404 5 HET NL9 B 401 15 HETNAM NL9 [1-(3-CHLOROPHENYL)-1H-PYRAZOL-4-YL]BORONIC ACID HETNAM PO4 PHOSPHATE ION FORMUL 3 NL9 3(C9 H8 B CL N2 O2) FORMUL 5 PO4 2(O4 P 3-) FORMUL 8 HOH *495(H2 O) HELIX 1 1 PRO A 5 LYS A 24 1 20 HELIX 2 2 VAL A 65 ARG A 80 1 16 HELIX 3 3 PRO A 88 TRP A 93 1 6 HELIX 4 4 ALA A 98 ASN A 102 5 5 HELIX 5 5 THR A 105 THR A 111 1 7 HELIX 6 6 SER A 127 TRP A 138 1 12 HELIX 7 7 ALA A 151 VAL A 163 1 13 HELIX 8 8 SER A 169 VAL A 178 1 10 HELIX 9 9 PRO A 192 TYR A 199 5 8 HELIX 10 10 LEU A 216 TYR A 221 1 6 HELIX 11 11 THR A 226 LYS A 239 1 14 HELIX 12 12 PRO A 240 ILE A 243 5 4 HELIX 13 13 GLU A 245 GLN A 256 1 12 HELIX 14 14 ASN A 279 SER A 287 1 9 HELIX 15 15 ASP A 288 LEU A 293 1 6 HELIX 16 16 PRO A 330 GLU A 333 5 4 HELIX 17 17 PRO A 345 GLN A 361 1 17 HELIX 18 18 PRO B 5 LYS B 24 1 20 HELIX 19 19 VAL B 65 ARG B 80 1 16 HELIX 20 20 PRO B 88 TYR B 92 5 5 HELIX 21 21 ALA B 98 ASN B 102 5 5 HELIX 22 22 THR B 105 THR B 111 1 7 HELIX 23 23 SER B 127 TRP B 138 1 12 HELIX 24 24 ALA B 151 VAL B 163 1 13 HELIX 25 25 SER B 169 VAL B 178 1 10 HELIX 26 26 PRO B 192 TYR B 199 5 8 HELIX 27 27 LEU B 216 GLY B 222 1 7 HELIX 28 28 THR B 226 LYS B 239 1 14 HELIX 29 29 PRO B 240 ILE B 243 5 4 HELIX 30 30 GLU B 245 GLN B 256 1 12 HELIX 31 31 ASN B 279 SER B 287 1 9 HELIX 32 32 ASP B 288 LEU B 293 1 6 HELIX 33 33 PRO B 330 GLU B 333 5 4 HELIX 34 34 PRO B 345 GLN B 361 1 17 SHEET 1 A10 GLN A 52 PRO A 53 0 SHEET 2 A10 LYS A 37 ASP A 47 -1 N ALA A 46 O GLN A 52 SHEET 3 A10 GLY A 27 TYR A 34 -1 N TYR A 34 O LYS A 37 SHEET 4 A10 LEU A 334 ALA A 340 -1 O LEU A 339 N ALA A 29 SHEET 5 A10 GLY A 323 ILE A 329 -1 N ILE A 329 O LEU A 334 SHEET 6 A10 SER A 311 ALA A 318 -1 N GLY A 317 O SER A 324 SHEET 7 A10 GLU A 272 ASP A 275 -1 N GLU A 272 O HIS A 314 SHEET 8 A10 MET A 265 GLN A 267 -1 N TYR A 266 O MET A 273 SHEET 9 A10 ARG A 258 THR A 262 -1 N TYR A 259 O GLN A 267 SHEET 10 A10 LYS A 299 THR A 305 -1 O THR A 305 N ARG A 258 SHEET 1 B 3 PHE A 60 GLU A 61 0 SHEET 2 B 3 LYS A 224 SER A 225 -1 O SER A 225 N PHE A 60 SHEET 3 B 3 THR A 187 TRP A 188 -1 N TRP A 188 O LYS A 224 SHEET 1 C 2 GLN A 147 ARG A 148 0 SHEET 2 C 2 ARG A 296 PRO A 297 -1 O ARG A 296 N ARG A 148 SHEET 1 D 2 GLY A 202 ARG A 204 0 SHEET 2 D 2 LYS A 207 VAL A 209 -1 O VAL A 209 N GLY A 202 SHEET 1 E10 GLN B 52 PRO B 53 0 SHEET 2 E10 LYS B 37 ASP B 47 -1 N ALA B 46 O GLN B 52 SHEET 3 E10 GLY B 27 TYR B 34 -1 N TYR B 34 O LYS B 37 SHEET 4 E10 LEU B 334 ALA B 340 -1 O GLY B 335 N ILE B 33 SHEET 5 E10 GLY B 323 ILE B 329 -1 N ALA B 327 O ILE B 336 SHEET 6 E10 SER B 311 ALA B 318 -1 N GLY B 317 O SER B 324 SHEET 7 E10 GLU B 272 ASP B 275 -1 N GLU B 272 O HIS B 314 SHEET 8 E10 MET B 265 GLN B 267 -1 N TYR B 266 O MET B 273 SHEET 9 E10 ARG B 258 THR B 262 -1 N THR B 262 O MET B 265 SHEET 10 E10 LYS B 299 THR B 305 -1 O THR B 305 N ARG B 258 SHEET 1 F 2 PHE B 60 GLU B 61 0 SHEET 2 F 2 LYS B 224 SER B 225 -1 O SER B 225 N PHE B 60 SHEET 1 G 2 GLN B 147 ARG B 148 0 SHEET 2 G 2 ARG B 296 PRO B 297 -1 O ARG B 296 N ARG B 148 SHEET 1 H 2 GLY B 202 ARG B 204 0 SHEET 2 H 2 LYS B 207 VAL B 209 -1 O VAL B 209 N GLY B 202 LINK OG SER A 64 B03 NL9 A 401 1555 1555 1.46 LINK OG SER B 64 B03 NL9 B 401 1555 1555 1.45 CISPEP 1 TRP A 276 PRO A 277 0 3.08 CISPEP 2 THR A 302 PRO A 303 0 -2.13 CISPEP 3 TRP B 276 PRO B 277 0 4.32 CISPEP 4 THR B 302 PRO B 303 0 -0.30 SITE 1 AC1 9 SER A 64 GLN A 120 TYR A 150 ASN A 152 SITE 2 AC1 9 TYR A 221 GLY A 317 ALA A 318 HOH A 650 SITE 3 AC1 9 HOH A 657 SITE 1 AC2 15 LEU A 85 LEU A 254 TYR A 259 PRO A 303 SITE 2 AC2 15 PRO A 304 PRO A 306 HOH A 648 LEU B 85 SITE 3 AC2 15 LEU B 254 SER B 257 TYR B 259 PRO B 303 SITE 4 AC2 15 PRO B 304 PRO B 306 HOH B 608 SITE 1 AC3 6 ARG A 133 HIS A 186 HOH A 662 HOH A 666 SITE 2 AC3 6 HOH A 749 LYS B 290 SITE 1 AC4 5 LEU A 161 LYS A 164 HOH A 637 HOH A 731 SITE 2 AC4 5 ASP B 281 SITE 1 AC5 9 SER B 64 GLN B 120 TYR B 150 ASN B 152 SITE 2 AC5 9 TYR B 221 GLY B 317 ALA B 318 HOH B 610 SITE 3 AC5 9 HOH B 616 CRYST1 118.580 77.540 97.640 90.00 116.46 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008433 0.000000 0.004197 0.00000 SCALE2 0.000000 0.012897 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011440 0.00000