HEADER HYDROLASE/HYDROLASE INHIBITOR 25-JUL-13 4LV2 TITLE AMPC BETA-LACTAMASE IN COMPLEX WITH [1-(6-CHLOROPYRIMIDIN-4-YL)-1H- TITLE 2 PYRAZOL-4-YL] BORONIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CEPHALOSPORINASE; COMPND 5 EC: 3.5.2.6; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: AMPA, AMPC, B4150, JW4111; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: JM109; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: POGO295 KEYWDS AMPC BETA-LACTAMASE, CLASS C, HYDROLASE, BORONIC ACID, COVALENT KEYWDS 2 INHIBITOR, HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR N.LONDON,O.EIDAM,B.K.SHOICHET REVDAT 4 20-SEP-23 4LV2 1 REMARK LINK REVDAT 3 26-NOV-14 4LV2 1 JRNL REVDAT 2 05-NOV-14 4LV2 1 JRNL REVDAT 1 30-JUL-14 4LV2 0 JRNL AUTH N.LONDON,R.M.MILLER,S.KRISHNAN,K.UCHIDA,J.J.IRWIN,O.EIDAM, JRNL AUTH 2 L.GIBOLD,P.CIMERMANCIC,R.BONNET,B.K.SHOICHET,J.TAUNTON JRNL TITL COVALENT DOCKING OF LARGE LIBRARIES FOR THE DISCOVERY OF JRNL TITL 2 CHEMICAL PROBES. JRNL REF NAT.CHEM.BIOL. V. 10 1066 2014 JRNL REFN ISSN 1552-4450 JRNL PMID 25344815 JRNL DOI 10.1038/NCHEMBIO.1666 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8_1069 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.58 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 94599 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.173 REMARK 3 R VALUE (WORKING SET) : 0.172 REMARK 3 FREE R VALUE : 0.193 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.620 REMARK 3 FREE R VALUE TEST SET COUNT : 3424 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.5780 - 4.7576 0.98 3850 141 0.1593 0.1773 REMARK 3 2 4.7576 - 3.7768 1.00 3811 172 0.1283 0.1469 REMARK 3 3 3.7768 - 3.2996 1.00 3846 143 0.1490 0.1735 REMARK 3 4 3.2996 - 2.9980 1.00 3816 154 0.1724 0.1828 REMARK 3 5 2.9980 - 2.7831 1.00 3769 172 0.1809 0.1910 REMARK 3 6 2.7831 - 2.6190 1.00 3772 159 0.1878 0.2012 REMARK 3 7 2.6190 - 2.4879 1.00 3850 146 0.1841 0.2405 REMARK 3 8 2.4879 - 2.3796 1.00 3819 140 0.1792 0.1971 REMARK 3 9 2.3796 - 2.2880 1.00 3817 135 0.1802 0.1987 REMARK 3 10 2.2880 - 2.2090 1.00 3807 132 0.1703 0.1969 REMARK 3 11 2.2090 - 2.1400 1.00 3772 168 0.1720 0.1920 REMARK 3 12 2.1400 - 2.0788 1.00 3770 159 0.1740 0.2114 REMARK 3 13 2.0788 - 2.0241 1.00 3816 145 0.1749 0.2140 REMARK 3 14 2.0241 - 1.9747 1.00 3825 144 0.1862 0.2160 REMARK 3 15 1.9747 - 1.9298 1.00 3804 150 0.1868 0.2015 REMARK 3 16 1.9298 - 1.8887 1.00 3827 105 0.1884 0.2046 REMARK 3 17 1.8887 - 1.8509 1.00 3811 112 0.2051 0.2307 REMARK 3 18 1.8509 - 1.8160 1.00 3784 147 0.2000 0.1907 REMARK 3 19 1.8160 - 1.7836 1.00 3817 152 0.2027 0.2192 REMARK 3 20 1.7836 - 1.7533 1.00 3793 143 0.2142 0.2658 REMARK 3 21 1.7533 - 1.7251 1.00 3793 118 0.2233 0.2383 REMARK 3 22 1.7251 - 1.6985 1.00 3847 80 0.2356 0.3228 REMARK 3 23 1.6985 - 1.6735 1.00 3771 158 0.2508 0.2804 REMARK 3 24 1.6735 - 1.6500 0.95 3588 149 0.2973 0.2985 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.830 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 5767 REMARK 3 ANGLE : 1.474 7922 REMARK 3 CHIRALITY : 0.107 867 REMARK 3 PLANARITY : 0.008 1021 REMARK 3 DIHEDRAL : 13.984 2052 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 4:86) REMARK 3 ORIGIN FOR THE GROUP (A): 24.0676 -9.2796 23.2926 REMARK 3 T TENSOR REMARK 3 T11: 0.1786 T22: 0.1254 REMARK 3 T33: 0.1223 T12: -0.0089 REMARK 3 T13: 0.0054 T23: -0.0096 REMARK 3 L TENSOR REMARK 3 L11: 1.2412 L22: 1.3488 REMARK 3 L33: 0.8826 L12: 0.4171 REMARK 3 L13: -0.1534 L23: 0.0132 REMARK 3 S TENSOR REMARK 3 S11: -0.0130 S12: -0.1091 S13: -0.0406 REMARK 3 S21: 0.1688 S22: -0.0144 S23: 0.0642 REMARK 3 S31: 0.1470 S32: -0.0225 S33: 0.0255 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 87:140) REMARK 3 ORIGIN FOR THE GROUP (A): 37.9970 13.4419 5.2014 REMARK 3 T TENSOR REMARK 3 T11: 0.2477 T22: 0.1956 REMARK 3 T33: 0.2035 T12: -0.0222 REMARK 3 T13: 0.0343 T23: 0.0333 REMARK 3 L TENSOR REMARK 3 L11: 1.4174 L22: 1.4818 REMARK 3 L33: 1.7082 L12: -0.6146 REMARK 3 L13: -0.4159 L23: -0.4327 REMARK 3 S TENSOR REMARK 3 S11: 0.0327 S12: 0.3308 S13: 0.2134 REMARK 3 S21: -0.4111 S22: -0.0178 S23: -0.1998 REMARK 3 S31: 0.0724 S32: -0.0124 S33: -0.0089 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 141:361) REMARK 3 ORIGIN FOR THE GROUP (A): 31.9371 -1.4120 20.3355 REMARK 3 T TENSOR REMARK 3 T11: 0.1179 T22: 0.1112 REMARK 3 T33: 0.1046 T12: 0.0120 REMARK 3 T13: -0.0072 T23: 0.0028 REMARK 3 L TENSOR REMARK 3 L11: 1.3331 L22: 1.5522 REMARK 3 L33: 0.8419 L12: 0.6174 REMARK 3 L13: -0.2099 L23: -0.1226 REMARK 3 S TENSOR REMARK 3 S11: -0.0217 S12: -0.0713 S13: -0.0298 REMARK 3 S21: 0.0581 S22: -0.0071 S23: -0.0741 REMARK 3 S31: 0.0566 S32: 0.0712 S33: 0.0256 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN B AND RESID 4:83) REMARK 3 ORIGIN FOR THE GROUP (A): 78.7261 -11.2416 23.8427 REMARK 3 T TENSOR REMARK 3 T11: 0.1656 T22: 0.1772 REMARK 3 T33: 0.1620 T12: 0.0132 REMARK 3 T13: -0.0232 T23: -0.0011 REMARK 3 L TENSOR REMARK 3 L11: 1.1684 L22: 1.5999 REMARK 3 L33: 1.6963 L12: -0.7674 REMARK 3 L13: 0.0752 L23: 0.0186 REMARK 3 S TENSOR REMARK 3 S11: -0.0328 S12: 0.0464 S13: -0.1789 REMARK 3 S21: 0.0880 S22: 0.0686 S23: -0.0037 REMARK 3 S31: 0.2222 S32: 0.2783 S33: -0.0299 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN B AND RESID 84:182) REMARK 3 ORIGIN FOR THE GROUP (A): 64.5339 10.4338 36.2819 REMARK 3 T TENSOR REMARK 3 T11: 0.2534 T22: 0.2105 REMARK 3 T33: 0.1520 T12: -0.0026 REMARK 3 T13: 0.0243 T23: 0.0111 REMARK 3 L TENSOR REMARK 3 L11: 1.0578 L22: 1.3835 REMARK 3 L33: 1.0492 L12: -0.2156 REMARK 3 L13: -0.1746 L23: -0.0189 REMARK 3 S TENSOR REMARK 3 S11: -0.0677 S12: -0.2849 S13: -0.0037 REMARK 3 S21: 0.4146 S22: 0.1151 S23: 0.1007 REMARK 3 S31: -0.0941 S32: 0.0347 S33: -0.0599 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN B AND RESID 183:361) REMARK 3 ORIGIN FOR THE GROUP (A): 71.6795 -3.0718 23.1799 REMARK 3 T TENSOR REMARK 3 T11: 0.1491 T22: 0.1767 REMARK 3 T33: 0.1627 T12: -0.0316 REMARK 3 T13: -0.0119 T23: 0.0020 REMARK 3 L TENSOR REMARK 3 L11: 1.2454 L22: 1.8793 REMARK 3 L33: 1.0615 L12: -1.0140 REMARK 3 L13: -0.1228 L23: 0.0365 REMARK 3 S TENSOR REMARK 3 S11: -0.0148 S12: 0.0126 S13: -0.1048 REMARK 3 S21: 0.0675 S22: 0.0342 S23: 0.0642 REMARK 3 S31: 0.0826 S32: 0.0891 S33: -0.0232 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4LV2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-AUG-13. REMARK 100 THE DEPOSITION ID IS D_1000081122. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-APR-13 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 8.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.11587 REMARK 200 MONOCHROMATOR : DOUBLE FLAT CRYSTAL, SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XSCALE REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 94603 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.05600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.7700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.75300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.080 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 1KE4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.41 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.7 M POTASSIUM PHOSPHATE, PH 8.8, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 58.83500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.07000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 58.83500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 39.07000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 21 CD OE1 OE2 REMARK 470 GLN A 22 CG CD OE1 NE2 REMARK 470 LYS A 24 CD CE NZ REMARK 470 LYS A 37 CG CD CE NZ REMARK 470 LYS A 51 NZ REMARK 470 LYS A 84 NZ REMARK 470 LYS A 91 NZ REMARK 470 LYS A 99 CG CD CE NZ REMARK 470 LYS A 126 CD CE NZ REMARK 470 SER A 128 OG REMARK 470 LYS A 197 NZ REMARK 470 ARG A 204 NE CZ NH1 NH2 REMARK 470 GLU A 205 CD OE1 OE2 REMARK 470 LYS A 207 CD CE NZ REMARK 470 LYS A 239 CE NZ REMARK 470 LEU A 241 CD1 CD2 REMARK 470 ASP A 242 CG OD1 OD2 REMARK 470 LYS A 246 CG CD CE NZ REMARK 470 LYS A 290 CD CE NZ REMARK 470 LYS A 299 CD CE NZ REMARK 470 LYS A 342 NZ REMARK 470 GLU B 21 CG CD OE1 OE2 REMARK 470 LYS B 24 CE NZ REMARK 470 LYS B 37 CG CD CE NZ REMARK 470 LYS B 50 CE NZ REMARK 470 GLN B 52 CD OE1 NE2 REMARK 470 GLN B 57 CG CD OE1 NE2 REMARK 470 LYS B 91 NZ REMARK 470 LYS B 99 NZ REMARK 470 LYS B 126 CG CD CE NZ REMARK 470 SER B 128 OG REMARK 470 SER B 129 OG REMARK 470 LYS B 164 NZ REMARK 470 LYS B 183 NZ REMARK 470 GLU B 196 CG CD OE1 OE2 REMARK 470 ARG B 204 CZ NH1 NH2 REMARK 470 GLU B 205 CG CD OE1 OE2 REMARK 470 LYS B 207 CG CD CE NZ REMARK 470 LYS B 239 CE NZ REMARK 470 LEU B 241 CD1 CD2 REMARK 470 ASN B 244 CG OD1 ND2 REMARK 470 LYS B 246 CG CD CE NZ REMARK 470 LYS B 299 CD CE NZ REMARK 470 GLU B 333 CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 87 OH TYR A 92 2.02 REMARK 500 OE1 GLN A 175 NE2 GLN A 180 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 154 -70.11 -91.93 REMARK 500 VAL A 178 -59.99 -121.90 REMARK 500 TYR A 221 17.88 -158.48 REMARK 500 ALA A 307 118.07 -39.82 REMARK 500 ASN A 341 46.25 -101.90 REMARK 500 SER B 154 -66.67 -90.56 REMARK 500 VAL B 178 -58.55 -124.96 REMARK 500 TYR B 221 19.20 -159.51 REMARK 500 ALA B 307 118.39 -39.89 REMARK 500 ASN B 341 42.39 -99.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE N95 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE N95 B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE N95 B 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4LV0 RELATED DB: PDB REMARK 900 RELATED ID: 4LV1 RELATED DB: PDB REMARK 900 RELATED ID: 4LV3 RELATED DB: PDB DBREF 4LV2 A 4 361 UNP P00811 AMPC_ECOLI 20 377 DBREF 4LV2 B 4 361 UNP P00811 AMPC_ECOLI 20 377 SEQRES 1 A 358 ALA PRO GLN GLN ILE ASN ASP ILE VAL HIS ARG THR ILE SEQRES 2 A 358 THR PRO LEU ILE GLU GLN GLN LYS ILE PRO GLY MET ALA SEQRES 3 A 358 VAL ALA VAL ILE TYR GLN GLY LYS PRO TYR TYR PHE THR SEQRES 4 A 358 TRP GLY TYR ALA ASP ILE ALA LYS LYS GLN PRO VAL THR SEQRES 5 A 358 GLN GLN THR LEU PHE GLU LEU GLY SER VAL SER LYS THR SEQRES 6 A 358 PHE THR GLY VAL LEU GLY GLY ASP ALA ILE ALA ARG GLY SEQRES 7 A 358 GLU ILE LYS LEU SER ASP PRO THR THR LYS TYR TRP PRO SEQRES 8 A 358 GLU LEU THR ALA LYS GLN TRP ASN GLY ILE THR LEU LEU SEQRES 9 A 358 HIS LEU ALA THR TYR THR ALA GLY GLY LEU PRO LEU GLN SEQRES 10 A 358 VAL PRO ASP GLU VAL LYS SER SER SER ASP LEU LEU ARG SEQRES 11 A 358 PHE TYR GLN ASN TRP GLN PRO ALA TRP ALA PRO GLY THR SEQRES 12 A 358 GLN ARG LEU TYR ALA ASN SER SER ILE GLY LEU PHE GLY SEQRES 13 A 358 ALA LEU ALA VAL LYS PRO SER GLY LEU SER PHE GLU GLN SEQRES 14 A 358 ALA MET GLN THR ARG VAL PHE GLN PRO LEU LYS LEU ASN SEQRES 15 A 358 HIS THR TRP ILE ASN VAL PRO PRO ALA GLU GLU LYS ASN SEQRES 16 A 358 TYR ALA TRP GLY TYR ARG GLU GLY LYS ALA VAL HIS VAL SEQRES 17 A 358 SER PRO GLY ALA LEU ASP ALA GLU ALA TYR GLY VAL LYS SEQRES 18 A 358 SER THR ILE GLU ASP MET ALA ARG TRP VAL GLN SER ASN SEQRES 19 A 358 LEU LYS PRO LEU ASP ILE ASN GLU LYS THR LEU GLN GLN SEQRES 20 A 358 GLY ILE GLN LEU ALA GLN SER ARG TYR TRP GLN THR GLY SEQRES 21 A 358 ASP MET TYR GLN GLY LEU GLY TRP GLU MET LEU ASP TRP SEQRES 22 A 358 PRO VAL ASN PRO ASP SER ILE ILE ASN GLY SER ASP ASN SEQRES 23 A 358 LYS ILE ALA LEU ALA ALA ARG PRO VAL LYS ALA ILE THR SEQRES 24 A 358 PRO PRO THR PRO ALA VAL ARG ALA SER TRP VAL HIS LYS SEQRES 25 A 358 THR GLY ALA THR GLY GLY PHE GLY SER TYR VAL ALA PHE SEQRES 26 A 358 ILE PRO GLU LYS GLU LEU GLY ILE VAL MET LEU ALA ASN SEQRES 27 A 358 LYS ASN TYR PRO ASN PRO ALA ARG VAL ASP ALA ALA TRP SEQRES 28 A 358 GLN ILE LEU ASN ALA LEU GLN SEQRES 1 B 358 ALA PRO GLN GLN ILE ASN ASP ILE VAL HIS ARG THR ILE SEQRES 2 B 358 THR PRO LEU ILE GLU GLN GLN LYS ILE PRO GLY MET ALA SEQRES 3 B 358 VAL ALA VAL ILE TYR GLN GLY LYS PRO TYR TYR PHE THR SEQRES 4 B 358 TRP GLY TYR ALA ASP ILE ALA LYS LYS GLN PRO VAL THR SEQRES 5 B 358 GLN GLN THR LEU PHE GLU LEU GLY SER VAL SER LYS THR SEQRES 6 B 358 PHE THR GLY VAL LEU GLY GLY ASP ALA ILE ALA ARG GLY SEQRES 7 B 358 GLU ILE LYS LEU SER ASP PRO THR THR LYS TYR TRP PRO SEQRES 8 B 358 GLU LEU THR ALA LYS GLN TRP ASN GLY ILE THR LEU LEU SEQRES 9 B 358 HIS LEU ALA THR TYR THR ALA GLY GLY LEU PRO LEU GLN SEQRES 10 B 358 VAL PRO ASP GLU VAL LYS SER SER SER ASP LEU LEU ARG SEQRES 11 B 358 PHE TYR GLN ASN TRP GLN PRO ALA TRP ALA PRO GLY THR SEQRES 12 B 358 GLN ARG LEU TYR ALA ASN SER SER ILE GLY LEU PHE GLY SEQRES 13 B 358 ALA LEU ALA VAL LYS PRO SER GLY LEU SER PHE GLU GLN SEQRES 14 B 358 ALA MET GLN THR ARG VAL PHE GLN PRO LEU LYS LEU ASN SEQRES 15 B 358 HIS THR TRP ILE ASN VAL PRO PRO ALA GLU GLU LYS ASN SEQRES 16 B 358 TYR ALA TRP GLY TYR ARG GLU GLY LYS ALA VAL HIS VAL SEQRES 17 B 358 SER PRO GLY ALA LEU ASP ALA GLU ALA TYR GLY VAL LYS SEQRES 18 B 358 SER THR ILE GLU ASP MET ALA ARG TRP VAL GLN SER ASN SEQRES 19 B 358 LEU LYS PRO LEU ASP ILE ASN GLU LYS THR LEU GLN GLN SEQRES 20 B 358 GLY ILE GLN LEU ALA GLN SER ARG TYR TRP GLN THR GLY SEQRES 21 B 358 ASP MET TYR GLN GLY LEU GLY TRP GLU MET LEU ASP TRP SEQRES 22 B 358 PRO VAL ASN PRO ASP SER ILE ILE ASN GLY SER ASP ASN SEQRES 23 B 358 LYS ILE ALA LEU ALA ALA ARG PRO VAL LYS ALA ILE THR SEQRES 24 B 358 PRO PRO THR PRO ALA VAL ARG ALA SER TRP VAL HIS LYS SEQRES 25 B 358 THR GLY ALA THR GLY GLY PHE GLY SER TYR VAL ALA PHE SEQRES 26 B 358 ILE PRO GLU LYS GLU LEU GLY ILE VAL MET LEU ALA ASN SEQRES 27 B 358 LYS ASN TYR PRO ASN PRO ALA ARG VAL ASP ALA ALA TRP SEQRES 28 B 358 GLN ILE LEU ASN ALA LEU GLN HET N95 A 401 15 HET PO4 A 402 5 HET N95 B 401 15 HET PO4 B 402 5 HET N95 B 403 15 HETNAM N95 [1-(6-CHLOROPYRIMIDIN-4-YL)-1H-PYRAZOL-4-YL]BORONIC HETNAM 2 N95 ACID HETNAM PO4 PHOSPHATE ION FORMUL 3 N95 3(C7 H6 B CL N4 O2) FORMUL 4 PO4 2(O4 P 3-) FORMUL 8 HOH *428(H2 O) HELIX 1 1 PRO A 5 LYS A 24 1 20 HELIX 2 2 VAL A 65 ARG A 80 1 16 HELIX 3 3 PRO A 88 TRP A 93 1 6 HELIX 4 4 ALA A 98 ASN A 102 5 5 HELIX 5 5 THR A 105 THR A 111 1 7 HELIX 6 6 SER A 127 TRP A 138 1 12 HELIX 7 7 ALA A 151 VAL A 163 1 13 HELIX 8 8 SER A 169 VAL A 178 1 10 HELIX 9 9 PRO A 192 TYR A 199 5 8 HELIX 10 10 LEU A 216 GLY A 222 1 7 HELIX 11 11 THR A 226 LYS A 239 1 14 HELIX 12 12 PRO A 240 ILE A 243 5 4 HELIX 13 13 GLU A 245 GLN A 256 1 12 HELIX 14 14 ASN A 279 SER A 287 1 9 HELIX 15 15 ASP A 288 LEU A 293 1 6 HELIX 16 16 PRO A 330 GLU A 333 5 4 HELIX 17 17 PRO A 345 GLN A 361 1 17 HELIX 18 18 PRO B 5 LYS B 24 1 20 HELIX 19 19 VAL B 65 ARG B 80 1 16 HELIX 20 20 PRO B 88 TRP B 93 1 6 HELIX 21 21 ALA B 98 ASN B 102 5 5 HELIX 22 22 THR B 105 THR B 111 1 7 HELIX 23 23 SER B 127 TRP B 138 1 12 HELIX 24 24 ALA B 151 VAL B 163 1 13 HELIX 25 25 LYS B 164 GLY B 167 5 4 HELIX 26 26 SER B 169 VAL B 178 1 10 HELIX 27 27 PRO B 192 TYR B 199 5 8 HELIX 28 28 LEU B 216 TYR B 221 1 6 HELIX 29 29 THR B 226 LYS B 239 1 14 HELIX 30 30 PRO B 240 ILE B 243 5 4 HELIX 31 31 GLU B 245 GLN B 256 1 12 HELIX 32 32 ASN B 279 SER B 287 1 9 HELIX 33 33 ASP B 288 LEU B 293 1 6 HELIX 34 34 PRO B 330 GLU B 333 5 4 HELIX 35 35 PRO B 345 GLN B 361 1 17 SHEET 1 A10 GLN A 52 PRO A 53 0 SHEET 2 A10 LYS A 37 ASP A 47 -1 N ALA A 46 O GLN A 52 SHEET 3 A10 GLY A 27 TYR A 34 -1 N TYR A 34 O LYS A 37 SHEET 4 A10 LEU A 334 ALA A 340 -1 O LEU A 339 N ALA A 29 SHEET 5 A10 GLY A 323 ILE A 329 -1 N TYR A 325 O MET A 338 SHEET 6 A10 SER A 311 ALA A 318 -1 N GLY A 317 O SER A 324 SHEET 7 A10 GLU A 272 ASP A 275 -1 N LEU A 274 O TRP A 312 SHEET 8 A10 MET A 265 GLN A 267 -1 N TYR A 266 O MET A 273 SHEET 9 A10 ARG A 258 THR A 262 -1 N TYR A 259 O GLN A 267 SHEET 10 A10 LYS A 299 THR A 305 -1 O THR A 305 N ARG A 258 SHEET 1 B 3 PHE A 60 GLU A 61 0 SHEET 2 B 3 LYS A 224 SER A 225 -1 O SER A 225 N PHE A 60 SHEET 3 B 3 THR A 187 TRP A 188 -1 N TRP A 188 O LYS A 224 SHEET 1 C 2 GLN A 147 ARG A 148 0 SHEET 2 C 2 ARG A 296 PRO A 297 -1 O ARG A 296 N ARG A 148 SHEET 1 D 2 GLY A 202 ARG A 204 0 SHEET 2 D 2 LYS A 207 VAL A 209 -1 O VAL A 209 N GLY A 202 SHEET 1 E10 GLN B 52 PRO B 53 0 SHEET 2 E10 LYS B 37 ASP B 47 -1 N ALA B 46 O GLN B 52 SHEET 3 E10 GLY B 27 TYR B 34 -1 N TYR B 34 O LYS B 37 SHEET 4 E10 LEU B 334 ALA B 340 -1 O LEU B 339 N ALA B 29 SHEET 5 E10 GLY B 323 ILE B 329 -1 N ILE B 329 O LEU B 334 SHEET 6 E10 SER B 311 ALA B 318 -1 N GLY B 317 O SER B 324 SHEET 7 E10 GLU B 272 ASP B 275 -1 N LEU B 274 O TRP B 312 SHEET 8 E10 MET B 265 GLN B 267 -1 N TYR B 266 O MET B 273 SHEET 9 E10 ARG B 258 THR B 262 -1 N THR B 262 O MET B 265 SHEET 10 E10 LYS B 299 THR B 305 -1 O THR B 305 N ARG B 258 SHEET 1 F 2 PHE B 60 GLU B 61 0 SHEET 2 F 2 LYS B 224 SER B 225 -1 O SER B 225 N PHE B 60 SHEET 1 G 2 GLN B 147 ARG B 148 0 SHEET 2 G 2 ARG B 296 PRO B 297 -1 O ARG B 296 N ARG B 148 SHEET 1 H 2 GLY B 202 ARG B 204 0 SHEET 2 H 2 LYS B 207 VAL B 209 -1 O VAL B 209 N GLY B 202 LINK OG SER A 64 B03 N95 A 401 1555 1555 1.46 LINK OG SER B 64 B03 N95 B 401 1555 1555 1.47 CISPEP 1 TRP A 276 PRO A 277 0 7.37 CISPEP 2 THR A 302 PRO A 303 0 -4.91 CISPEP 3 TRP B 276 PRO B 277 0 6.57 CISPEP 4 THR B 302 PRO B 303 0 -1.06 SITE 1 AC1 8 SER A 64 GLN A 120 TYR A 150 ASN A 152 SITE 2 AC1 8 TYR A 221 GLY A 317 ALA A 318 HOH A 637 SITE 1 AC2 4 TRP A 93 LEU A 157 LEU A 161 LYS A 164 SITE 1 AC3 9 SER B 64 GLN B 120 TYR B 150 ASN B 152 SITE 2 AC3 9 TYR B 221 GLY B 317 ALA B 318 HOH B 600 SITE 3 AC3 9 HOH B 602 SITE 1 AC4 7 ARG A 133 HIS A 186 HOH A 610 HOH A 668 SITE 2 AC4 7 LYS B 290 HOH B 615 HOH B 681 SITE 1 AC5 13 LYS A 290 LEU A 293 ALA A 294 ALA A 295 SITE 2 AC5 13 HOH A 662 HIS B 13 TYR B 40 PHE B 41 SITE 3 AC5 13 THR B 42 TRP B 43 GLN B 56 HOH B 603 SITE 4 AC5 13 HOH B 653 CRYST1 117.670 78.140 97.250 90.00 116.28 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008498 0.000000 0.004196 0.00000 SCALE2 0.000000 0.012798 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011468 0.00000