HEADER LYASE/LYASE INHIBITOR 25-JUL-13 4LV4 TITLE A NONCOMPETITIVE INHIBITOR FOR M. TUBERCULOSIS'S CLASS IIA FRUCTOSE 1, TITLE 2 6-BISPHOSPHATE ALDOLASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: FRUCTOSE-BISPHOSPHATE ALDOLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: FBP ALDOLASE, FBPA, FRUCTOSE-1,6-BISPHOSPHATE ALDOLASE; COMPND 5 EC: 4.1.2.13; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 83332; SOURCE 4 STRAIN: H37RV; SOURCE 5 GENE: FBA, MT0379, MTCY13E10.25C, RV0363C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET17B KEYWDS CLASS II FRUCTOSE-1, 6-BISPHOSPHATE ALDOLASE, ZINC ENZYME, KEYWDS 2 MYCOBACTERIUM TUBERCULOSIS, DIHYDROXYACETONE, GLYCERALDEHYDE-3- KEYWDS 3 PHOSPHATE, ALDOL CONDENSATION, GLYCOLYSIS, LYASE, METAL-BINDING, 8- KEYWDS 4 HYDROXYQUINOLINE-2-CARBOXYLIC ACID, LYASE-LYASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR G.C.CAPODAGLI,S.D.PEGAN REVDAT 4 20-SEP-23 4LV4 1 REMARK SEQADV LINK REVDAT 3 15-NOV-17 4LV4 1 REMARK REVDAT 2 29-JAN-14 4LV4 1 JRNL REVDAT 1 08-JAN-14 4LV4 0 JRNL AUTH G.C.CAPODAGLI,W.G.SEDHOM,M.JACKSON,K.A.AHRENDT,S.D.PEGAN JRNL TITL A NONCOMPETITIVE INHIBITOR FOR MYCOBACTERIUM TUBERCULOSIS'S JRNL TITL 2 CLASS IIA FRUCTOSE 1,6-BISPHOSPHATE ALDOLASE. JRNL REF BIOCHEMISTRY V. 53 202 2014 JRNL REFN ISSN 0006-2960 JRNL PMID 24325645 JRNL DOI 10.1021/BI401022B REMARK 2 REMARK 2 RESOLUTION. 2.08 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.2_1309 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.08 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.18 REMARK 3 MIN(FOBS/SIGMA_FOBS) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 35977 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.191 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1799 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.1876 - 4.8793 0.99 2805 154 0.1735 0.1882 REMARK 3 2 4.8793 - 3.8735 1.00 2710 140 0.1384 0.1698 REMARK 3 3 3.8735 - 3.3841 1.00 2660 153 0.1478 0.1487 REMARK 3 4 3.3841 - 3.0747 1.00 2691 133 0.1688 0.2047 REMARK 3 5 3.0747 - 2.8544 1.00 2630 152 0.1607 0.2110 REMARK 3 6 2.8544 - 2.6861 1.00 2662 149 0.1678 0.2050 REMARK 3 7 2.6861 - 2.5516 1.00 2625 152 0.1564 0.1910 REMARK 3 8 2.5516 - 2.4406 1.00 2680 119 0.1575 0.2032 REMARK 3 9 2.4406 - 2.3466 1.00 2627 135 0.1528 0.1843 REMARK 3 10 2.3466 - 2.2656 1.00 2633 143 0.1659 0.1999 REMARK 3 11 2.2656 - 2.1948 1.00 2620 128 0.2165 0.2984 REMARK 3 12 2.1948 - 2.1321 1.00 2658 125 0.1750 0.2152 REMARK 3 13 2.1321 - 2.0759 0.83 2177 116 0.1732 0.2029 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : NULL REMARK 3 SHRINKAGE RADIUS : NULL REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.250 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.96 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 2568 REMARK 3 ANGLE : 1.060 3489 REMARK 3 CHIRALITY : 0.074 388 REMARK 3 PLANARITY : 0.004 453 REMARK 3 DIHEDRAL : 14.475 927 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4LV4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-AUG-13. REMARK 100 THE DEPOSITION ID IS D_1000081124. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-JAN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 4.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NOIR-1 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36003 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.080 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.09900 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.08 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.14 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.50 REMARK 200 R MERGE FOR SHELL (I) : 0.28500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.2 REMARK 200 STARTING MODEL: PDB ENTRY 4DEF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 69.17 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.99 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 26% PEG 300, 0.1 M SODIUM ACETATE, 2.5 REMARK 280 MM 8-HYDROXYQUINOLINE-2-CARBOXYLIC ACID, PH 4.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 30.27950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 59.46650 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 82.59200 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 30.27950 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 59.46650 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 82.59200 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 30.27950 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 59.46650 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 82.59200 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 30.27950 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 59.46650 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 82.59200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE SECOND, THIRD, AND FOURTH PARTS OF THE BIOLOGICAL REMARK 300 ASSEMBLY IS GENERATED BY THE TWO FOLD AXES: -X, -Y+1, Z ; X-1/2, -Y+ REMARK 300 1/2, Z+1/2; X, -Y+1, -Z. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11720 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 44090 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -88.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 356.79900 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 356.79900 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 586 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLY A 167 REMARK 465 GLU A 168 REMARK 465 GLU A 169 REMARK 465 ASP A 170 REMARK 465 GLY A 171 REMARK 465 VAL A 172 REMARK 465 ALA A 173 REMARK 465 ASN A 174 REMARK 465 GLU A 175 REMARK 465 ILE A 176 REMARK 465 ASN A 177 REMARK 465 ASN A 210 REMARK 465 VAL A 211 REMARK 465 HIS A 212 REMARK 465 GLY A 213 REMARK 465 VAL A 214 REMARK 465 TYR A 215 REMARK 465 LYS A 216 REMARK 465 PRO A 217 REMARK 465 GLY A 218 REMARK 465 ASN A 219 REMARK 465 VAL A 220 REMARK 465 LYS A 221 REMARK 465 LEU A 222 REMARK 465 ARG A 223 REMARK 465 HIS A 347 REMARK 465 HIS A 348 REMARK 465 HIS A 349 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 100 O HOH A 628 2.08 REMARK 500 O HOH A 626 O HOH A 698 2.11 REMARK 500 O HOH A 614 O HOH A 681 2.18 REMARK 500 O HOH A 622 O HOH A 773 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 65 -54.59 -125.34 REMARK 500 PRO A 87 40.50 -88.95 REMARK 500 HIS A 96 105.67 -9.35 REMARK 500 TYR A 105 -84.55 -144.27 REMARK 500 LYS A 259 54.11 -65.51 REMARK 500 SER A 260 -33.77 -161.37 REMARK 500 ASP A 276 -62.77 -142.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 96 NE2 REMARK 620 2 HIS A 252 ND1 103.9 REMARK 620 3 8HC A 403 N05 127.2 128.9 REMARK 620 4 8HC A 403 O03 89.9 102.0 80.9 REMARK 620 5 8HC A 403 O12 103.0 95.1 74.8 155.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 344 ND1 REMARK 620 2 HIS A 346 NE2 118.7 REMARK 620 3 HOH A 538 O 90.2 86.6 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 8HC A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1PE A 406 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4DEF RELATED DB: PDB REMARK 900 RELATED ID: 4DEL RELATED DB: PDB REMARK 900 RELATED ID: 3EKL RELATED DB: PDB REMARK 900 RELATED ID: 3EKZ RELATED DB: PDB REMARK 900 RELATED ID: 3ELF RELATED DB: PDB REMARK 900 RELATED ID: 4A21 RELATED DB: PDB REMARK 900 RELATED ID: 4A22 RELATED DB: PDB DBREF 4LV4 A 1 344 UNP P67475 ALF_MYCTU 1 344 SEQADV 4LV4 HIS A 345 UNP P67475 EXPRESSION TAG SEQADV 4LV4 HIS A 346 UNP P67475 EXPRESSION TAG SEQADV 4LV4 HIS A 347 UNP P67475 EXPRESSION TAG SEQADV 4LV4 HIS A 348 UNP P67475 EXPRESSION TAG SEQADV 4LV4 HIS A 349 UNP P67475 EXPRESSION TAG SEQRES 1 A 349 MET PRO ILE ALA THR PRO GLU VAL TYR ALA GLU MET LEU SEQRES 2 A 349 GLY GLN ALA LYS GLN ASN SER TYR ALA PHE PRO ALA ILE SEQRES 3 A 349 ASN CYS THR SER SER GLU THR VAL ASN ALA ALA ILE LYS SEQRES 4 A 349 GLY PHE ALA ASP ALA GLY SER ASP GLY ILE ILE GLN PHE SEQRES 5 A 349 SER THR GLY GLY ALA GLU PHE GLY SER GLY LEU GLY VAL SEQRES 6 A 349 LYS ASP MET VAL THR GLY ALA VAL ALA LEU ALA GLU PHE SEQRES 7 A 349 THR HIS VAL ILE ALA ALA LYS TYR PRO VAL ASN VAL ALA SEQRES 8 A 349 LEU HIS THR ASP HIS CYS PRO LYS ASP LYS LEU ASP SER SEQRES 9 A 349 TYR VAL ARG PRO LEU LEU ALA ILE SER ALA GLN ARG VAL SEQRES 10 A 349 SER LYS GLY GLY ASN PRO LEU PHE GLN SER HIS MET TRP SEQRES 11 A 349 ASP GLY SER ALA VAL PRO ILE ASP GLU ASN LEU ALA ILE SEQRES 12 A 349 ALA GLN GLU LEU LEU LYS ALA ALA ALA ALA ALA LYS ILE SEQRES 13 A 349 ILE LEU GLU ILE GLU ILE GLY VAL VAL GLY GLY GLU GLU SEQRES 14 A 349 ASP GLY VAL ALA ASN GLU ILE ASN GLU LYS LEU TYR THR SEQRES 15 A 349 SER PRO GLU ASP PHE GLU LYS THR ILE GLU ALA LEU GLY SEQRES 16 A 349 ALA GLY GLU HIS GLY LYS TYR LEU LEU ALA ALA THR PHE SEQRES 17 A 349 GLY ASN VAL HIS GLY VAL TYR LYS PRO GLY ASN VAL LYS SEQRES 18 A 349 LEU ARG PRO ASP ILE LEU ALA GLN GLY GLN GLN VAL ALA SEQRES 19 A 349 ALA ALA LYS LEU GLY LEU PRO ALA ASP ALA LYS PRO PHE SEQRES 20 A 349 ASP PHE VAL PHE HIS GLY GLY SER GLY SER LEU LYS SER SEQRES 21 A 349 GLU ILE GLU GLU ALA LEU ARG TYR GLY VAL VAL LYS MET SEQRES 22 A 349 ASN VAL ASP THR ASP THR GLN TYR ALA PHE THR ARG PRO SEQRES 23 A 349 ILE ALA GLY HIS MET PHE THR ASN TYR ASP GLY VAL LEU SEQRES 24 A 349 LYS VAL ASP GLY GLU VAL GLY VAL LYS LYS VAL TYR ASP SEQRES 25 A 349 PRO ARG SER TYR LEU LYS LYS ALA GLU ALA SER MET SER SEQRES 26 A 349 GLN ARG VAL VAL GLN ALA CYS ASN ASP LEU HIS CYS ALA SEQRES 27 A 349 GLY LYS SER LEU THR HIS HIS HIS HIS HIS HIS HET ZN A 401 1 HET ZN A 402 1 HET 8HC A 403 20 HET ACT A 404 7 HET ACT A 405 7 HET 1PE A 406 38 HETNAM ZN ZINC ION HETNAM 8HC 8-HYDROXYQUINOLINE-2-CARBOXYLIC ACID HETNAM ACT ACETATE ION HETNAM 1PE PENTAETHYLENE GLYCOL HETSYN 1PE PEG400 FORMUL 2 ZN 2(ZN 2+) FORMUL 4 8HC C10 H7 N O3 FORMUL 5 ACT 2(C2 H3 O2 1-) FORMUL 7 1PE C10 H22 O6 FORMUL 8 HOH *357(H2 O) HELIX 1 1 THR A 5 ASN A 19 1 15 HELIX 2 2 SER A 30 ALA A 44 1 15 HELIX 3 3 SER A 53 SER A 61 1 9 HELIX 4 4 ASP A 67 ALA A 84 1 18 HELIX 5 5 PRO A 98 SER A 104 5 7 HELIX 6 6 TYR A 105 LYS A 119 1 15 HELIX 7 7 PRO A 136 ALA A 154 1 19 HELIX 8 8 SER A 183 GLY A 195 1 13 HELIX 9 9 ASP A 225 LEU A 238 1 14 HELIX 10 10 SER A 260 TYR A 268 1 9 HELIX 11 11 ASP A 276 ASN A 294 1 19 HELIX 12 12 ASN A 294 LEU A 299 1 6 HELIX 13 13 VAL A 307 ASP A 312 1 6 HELIX 14 14 ASP A 312 LEU A 335 1 24 SHEET 1 A 9 PHE A 23 ASN A 27 0 SHEET 2 A 9 GLY A 48 PHE A 52 1 O ILE A 49 N ILE A 26 SHEET 3 A 9 VAL A 90 THR A 94 1 O ALA A 91 N ILE A 50 SHEET 4 A 9 SER A 127 ASP A 131 1 O MET A 129 N THR A 94 SHEET 5 A 9 ILE A 157 GLU A 161 1 O GLU A 159 N TRP A 130 SHEET 6 A 9 TYR A 202 ALA A 206 1 O LEU A 203 N LEU A 158 SHEET 7 A 9 PHE A 249 PHE A 251 1 O VAL A 250 N LEU A 204 SHEET 8 A 9 VAL A 270 VAL A 275 1 O LYS A 272 N PHE A 251 SHEET 9 A 9 PHE A 23 ASN A 27 1 N PHE A 23 O MET A 273 SHEET 1 B 2 VAL A 164 VAL A 165 0 SHEET 2 B 2 LEU A 180 TYR A 181 -1 O TYR A 181 N VAL A 164 LINK NE2 HIS A 96 ZN ZN A 401 1555 1555 2.02 LINK ND1 HIS A 252 ZN ZN A 401 1555 1555 2.08 LINK ND1 HIS A 344 ZN ZN A 402 1555 1555 2.04 LINK NE2 HIS A 346 ZN ZN A 402 1555 1555 2.08 LINK ZN ZN A 401 N05 8HC A 403 1555 1555 2.00 LINK ZN ZN A 401 O03 8HC A 403 1555 1555 2.09 LINK ZN ZN A 401 O12 8HC A 403 1555 1555 2.23 LINK ZN ZN A 402 O HOH A 538 1555 1555 2.21 SITE 1 AC1 3 HIS A 96 HIS A 252 8HC A 403 SITE 1 AC2 5 GLU A 198 HIS A 199 HIS A 344 HIS A 346 SITE 2 AC2 5 HOH A 538 SITE 1 AC3 7 HIS A 96 GLU A 161 GLU A 178 HIS A 252 SITE 2 AC3 7 ZN A 401 HOH A 533 HOH A 652 SITE 1 AC4 5 GLY A 197 LYS A 201 TYR A 202 ASP A 248 SITE 2 AC4 5 HOH A 568 SITE 1 AC5 2 VAL A 65 HOH A 787 SITE 1 AC6 4 LYS A 300 ASP A 302 VAL A 305 TYR A 311 CRYST1 60.559 118.933 165.184 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016513 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008408 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006054 0.00000