HEADER TRANSFERASE/HYDROLASE 26-JUL-13 4LV8 TITLE MURINE IRGA6 BOUND TO TOXOPLASMA ROP5C, A PSEUDOKINASE GDI COMPND MOL_ID: 1; COMPND 2 MOLECULE: RHOPTRY PROTEIN 5 C; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 175-541; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: INTERFERON-INDUCIBLE GTPASE 1; COMPND 8 CHAIN: B; COMPND 9 EC: 3.6.5.-; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TOXOPLASMA GONDII TYPE I; SOURCE 3 ORGANISM_TAXID: 1209525; SOURCE 4 STRAIN: RH; SOURCE 5 GENE: ROP5C; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLAMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 13 ORGANISM_COMMON: MOUSE; SOURCE 14 ORGANISM_TAXID: 10090; SOURCE 15 GENE: IIGP1, IRGA6; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PGEX4T KEYWDS IMMUNE RELATED GTPASE, GUANINE DISSOCIATION INHIBITOR, PARASITE KEYWDS 2 EFFECTOR, TRANSFERASE-HYDROLASE COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.L.REESE,J.C.BOOTHROYD REVDAT 4 20-SEP-23 4LV8 1 REMARK SEQADV LINK REVDAT 3 15-NOV-17 4LV8 1 REMARK REVDAT 2 02-OCT-13 4LV8 1 REMARK REVDAT 1 25-SEP-13 4LV8 0 JRNL AUTH M.L.REESE,N.SHAH,J.C.BOOTHROYD JRNL TITL MURINE IRGA6 BOUND TO TOXOPLASMA ROP5C, A PSEUDOKINASE GDI JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.72 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8_1069 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.72 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.67 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.970 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 90512 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.196 REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 1.500 REMARK 3 FREE R VALUE TEST SET COUNT : 1361 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.6784 - 3.7047 1.00 8936 137 0.1646 0.1872 REMARK 3 2 3.7047 - 2.9409 1.00 8895 136 0.1840 0.2130 REMARK 3 3 2.9409 - 2.5692 1.00 8915 134 0.1948 0.2403 REMARK 3 4 2.5692 - 2.3343 1.00 8896 136 0.1956 0.2626 REMARK 3 5 2.3343 - 2.1670 1.00 8907 143 0.1968 0.2267 REMARK 3 6 2.1670 - 2.0393 1.00 8967 131 0.2089 0.2626 REMARK 3 7 2.0393 - 1.9372 1.00 8910 130 0.2348 0.2679 REMARK 3 8 1.9372 - 1.8528 1.00 8893 138 0.2630 0.3243 REMARK 3 9 1.8528 - 1.7815 1.00 8877 143 0.3030 0.3401 REMARK 3 10 1.7815 - 1.7200 1.00 8955 133 0.3424 0.3751 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.380 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 35.36 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 6293 REMARK 3 ANGLE : 1.128 8523 REMARK 3 CHIRALITY : 0.079 964 REMARK 3 PLANARITY : 0.005 1086 REMARK 3 DIHEDRAL : 14.435 2387 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4LV8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-AUG-13. REMARK 100 THE DEPOSITION ID IS D_1000081128. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97945 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 90541 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.720 REMARK 200 RESOLUTION RANGE LOW (A) : 38.669 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.4300 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.72 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.02000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.520 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: 3Q60 AND THEN 1TPZ:A USING PHASER REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.80 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.45 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% PEG 20,000, 0.1M MES 5.8, PH 5.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL UNIT IS THE SAME AS ASYM. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 171 REMARK 465 SER A 172 REMARK 465 HIS A 173 REMARK 465 MET A 174 REMARK 465 GLU A 175 REMARK 465 LEU A 290 REMARK 465 GLY A 291 REMARK 465 GLU A 292 REMARK 465 THR A 539 REMARK 465 GLY A 540 REMARK 465 GLN A 541 REMARK 465 GLY B -9 REMARK 465 SER B -8 REMARK 465 PRO B -7 REMARK 465 GLY B -6 REMARK 465 ILE B -5 REMARK 465 PRO B -4 REMARK 465 GLY B -3 REMARK 465 SER B -2 REMARK 465 THR B -1 REMARK 465 THR B 0 REMARK 465 MET B 1 REMARK 465 GLY B 2 REMARK 465 GLN B 3 REMARK 465 LEU B 4 REMARK 465 PHE B 5 REMARK 465 SER B 6 REMARK 465 SER B 7 REMARK 465 PRO B 8 REMARK 465 LYS B 9 REMARK 465 SER B 10 REMARK 465 ASP B 11 REMARK 465 GLU B 12 REMARK 465 ASN B 13 REMARK 465 ALA B 331 REMARK 465 ARG B 332 REMARK 465 ASP B 333 REMARK 465 TRP B 334 REMARK 465 GLU B 335 REMARK 465 ILE B 336 REMARK 465 GLU B 337 REMARK 465 LEU B 411 REMARK 465 ARG B 412 REMARK 465 ASN B 413 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 892 O HOH B 898 1.86 REMARK 500 O HOH A 883 O HOH A 942 1.90 REMARK 500 O HOH A 842 O HOH B 822 1.92 REMARK 500 O HOH A 999 O HOH A 1000 1.92 REMARK 500 N GLY A 177 O HOH A 966 1.92 REMARK 500 OE1 GLU B 148 O HOH B 897 2.00 REMARK 500 O HOH A 773 O HOH A 805 2.00 REMARK 500 NE ARG B 210 O HOH B 895 2.01 REMARK 500 O HOH A 871 O HOH A 930 2.01 REMARK 500 O1 EDO A 605 O HOH A 737 2.02 REMARK 500 O HOH A 924 O HOH A 930 2.05 REMARK 500 O HOH A 989 O HOH A 1002 2.05 REMARK 500 O HOH A 874 O HOH A 875 2.06 REMARK 500 O ARG B 45 O HOH B 821 2.06 REMARK 500 O HOH A 813 O HOH A 843 2.07 REMARK 500 O HOH A 977 O HOH A 988 2.07 REMARK 500 O HOH A 887 O HOH A 899 2.10 REMARK 500 O HOH B 764 O HOH B 778 2.10 REMARK 500 NH2 ARG A 300 O HOH A 927 2.11 REMARK 500 O HOH B 739 O HOH B 822 2.11 REMARK 500 O3B ADP A 601 O HOH A 965 2.12 REMARK 500 O HOH B 768 O HOH B 887 2.12 REMARK 500 O HOH A 736 O HOH A 826 2.12 REMARK 500 O HOH A 905 O HOH A 941 2.13 REMARK 500 O HOH A 813 O HOH A 880 2.13 REMARK 500 O HOH A 990 O HOH A 996 2.16 REMARK 500 O HOH A 975 O HOH A 982 2.16 REMARK 500 O HOH B 863 O HOH B 872 2.17 REMARK 500 OE1 GLN A 500 O HOH A 931 2.18 REMARK 500 OE2 GLU B 203 O HOH B 888 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 203 33.70 -91.90 REMARK 500 GLN A 217 -53.82 -136.24 REMARK 500 LEU A 227 -134.13 -107.74 REMARK 500 VAL A 237 -61.19 -95.11 REMARK 500 GLU A 270 -33.13 -132.73 REMARK 500 ASN A 271 65.77 -118.98 REMARK 500 PHE A 318 -48.27 78.72 REMARK 500 ASP A 327 -5.88 75.17 REMARK 500 ARG A 358 -46.73 -133.32 REMARK 500 LEU A 459 -44.88 71.08 REMARK 500 LEU A 459 -44.88 71.49 REMARK 500 PHE A 463 18.24 59.91 REMARK 500 GLU B 96 -179.82 -68.60 REMARK 500 ILE B 119 79.32 -119.68 REMARK 500 THR B 158 -60.32 78.68 REMARK 500 TYR B 238 -137.01 53.58 REMARK 500 ASP B 290 135.19 80.18 REMARK 500 ARG B 329 20.06 -77.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 602 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ADP A 601 O1B REMARK 620 2 ADP A 601 O1A 80.8 REMARK 620 3 HOH A 897 O 166.2 85.8 REMARK 620 4 HOH A 965 O 84.8 117.8 104.6 REMARK 620 5 HOH A 986 O 89.5 129.5 96.5 110.4 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ADP A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 606 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 607 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP B 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 606 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4LV5 RELATED DB: PDB REMARK 900 IRGA6 IN COMPLEX WITH A DIFFERENT ALLELE OF ROP5 DBREF 4LV8 A 175 541 UNP I6ZQR7 I6ZQR7_TOXGO 175 541 DBREF 4LV8 B 1 413 UNP Q9QZ85 IIGP1_MOUSE 1 413 SEQADV 4LV8 GLY A 171 UNP I6ZQR7 EXPRESSION TAG SEQADV 4LV8 SER A 172 UNP I6ZQR7 EXPRESSION TAG SEQADV 4LV8 HIS A 173 UNP I6ZQR7 EXPRESSION TAG SEQADV 4LV8 MET A 174 UNP I6ZQR7 EXPRESSION TAG SEQADV 4LV8 GLY B -9 UNP Q9QZ85 EXPRESSION TAG SEQADV 4LV8 SER B -8 UNP Q9QZ85 EXPRESSION TAG SEQADV 4LV8 PRO B -7 UNP Q9QZ85 EXPRESSION TAG SEQADV 4LV8 GLY B -6 UNP Q9QZ85 EXPRESSION TAG SEQADV 4LV8 ILE B -5 UNP Q9QZ85 EXPRESSION TAG SEQADV 4LV8 PRO B -4 UNP Q9QZ85 EXPRESSION TAG SEQADV 4LV8 GLY B -3 UNP Q9QZ85 EXPRESSION TAG SEQADV 4LV8 SER B -2 UNP Q9QZ85 EXPRESSION TAG SEQADV 4LV8 THR B -1 UNP Q9QZ85 EXPRESSION TAG SEQADV 4LV8 THR B 0 UNP Q9QZ85 EXPRESSION TAG SEQRES 1 A 371 GLY SER HIS MET GLU ALA GLY ASP SER PHE MET ARG ASP SEQRES 2 A 371 LEU LEU LYS ARG GLU GLU GLU LEU ILE GLY TYR CYS ARG SEQRES 3 A 371 GLU GLU ALA LEU LYS GLU PRO ALA ALA MET VAL GLU ALA SEQRES 4 A 371 VAL THR ALA THR VAL TRP PRO GLN ASN ALA GLU THR THR SEQRES 5 A 371 VAL ASP SER LEU LEU SER GLN GLY GLU ARG LYS LEU LYS SEQRES 6 A 371 LEU VAL GLU PRO LEU ARG VAL GLY ASP ARG SER VAL VAL SEQRES 7 A 371 PHE LEU VAL ARG ASP VAL GLU ARG LEU GLU ASP PHE ALA SEQRES 8 A 371 LEU LYS VAL PHE THR MET GLY ALA GLU ASN SER ARG SER SEQRES 9 A 371 GLU LEU GLU ARG LEU HIS GLU ALA THR PHE ALA ALA ALA SEQRES 10 A 371 ARG LEU LEU GLY GLU SER PRO GLU GLU ALA ARG ASP ARG SEQRES 11 A 371 ARG ARG LEU LEU LEU PRO SER ASP ALA VAL ALA VAL GLN SEQRES 12 A 371 SER GLN PRO PRO PHE ALA GLN LEU SER PRO GLY GLN SER SEQRES 13 A 371 ASP TYR ALA VAL ALA ASN TYR LEU LEU LEU MET PRO ALA SEQRES 14 A 371 ALA SER VAL ASP LEU GLU LEU LEU PHE ARG THR LEU ASP SEQRES 15 A 371 PHE LEU TYR VAL LEU ARG SER THR GLU ASP PHE LEU ALA SEQRES 16 A 371 LEU HIS ILE LEU THR ALA GLN LEU ILE ARG LEU ALA ALA SEQRES 17 A 371 ASN LEU GLN SER LYS GLY LEU VAL HIS GLY HIS PHE THR SEQRES 18 A 371 PRO ASP ASN LEU PHE ILE MET PRO ASP GLY ARG LEU MET SEQRES 19 A 371 LEU GLY ASP VAL SER VAL LEU ARG LYS VAL GLY THR ARG SEQRES 20 A 371 GLY PRO ALA SER SER VAL PRO VAL THR TYR ALA PRO ARG SEQRES 21 A 371 GLU PHE LEU ASN ALA SER THR ALA THR PHE THR HIS ALA SEQRES 22 A 371 LEU ASP ALA TRP GLN LEU GLY LEU SER ILE TYR ARG VAL SEQRES 23 A 371 TRP CYS LEU PHE LEU PRO PHE GLY LEU VAL THR PRO GLY SEQRES 24 A 371 ILE LYS GLY SER TRP LYS ARG PRO SER LEU ARG VAL PRO SEQRES 25 A 371 GLY THR ASP SER LEU ALA PHE GLY SER CYS THR PRO LEU SEQRES 26 A 371 PRO ASP PHE VAL GLN THR LEU ILE GLY ARG PHE LEU ASN SEQRES 27 A 371 PHE ASP ARG ARG ARG ARG LEU LEU PRO LEU GLU ALA MET SEQRES 28 A 371 GLU THR PRO GLU PHE LEU GLN LEU GLN ASN GLU ILE SER SEQRES 29 A 371 SER SER LEU SER THR GLY GLN SEQRES 1 B 423 GLY SER PRO GLY ILE PRO GLY SER THR THR MET GLY GLN SEQRES 2 B 423 LEU PHE SER SER PRO LYS SER ASP GLU ASN ASN ASP LEU SEQRES 3 B 423 PRO SER SER PHE THR GLY TYR PHE LYS LYS PHE ASN THR SEQRES 4 B 423 GLY ARG LYS ILE ILE SER GLN GLU ILE LEU ASN LEU ILE SEQRES 5 B 423 GLU LEU ARG MET ARG LYS GLY ASN ILE GLN LEU THR ASN SEQRES 6 B 423 SER ALA ILE SER ASP ALA LEU LYS GLU ILE ASP SER SER SEQRES 7 B 423 VAL LEU ASN VAL ALA VAL THR GLY GLU THR GLY SER GLY SEQRES 8 B 423 LYS SER SER PHE ILE ASN THR LEU ARG GLY ILE GLY ASN SEQRES 9 B 423 GLU GLU GLU GLY ALA ALA LYS THR GLY VAL VAL GLU VAL SEQRES 10 B 423 THR MET GLU ARG HIS PRO TYR LYS HIS PRO ASN ILE PRO SEQRES 11 B 423 ASN VAL VAL PHE TRP ASP LEU PRO GLY ILE GLY SER THR SEQRES 12 B 423 ASN PHE PRO PRO ASN THR TYR LEU GLU LYS MET LYS PHE SEQRES 13 B 423 TYR GLU TYR ASP PHE PHE ILE ILE ILE SER ALA THR ARG SEQRES 14 B 423 PHE LYS LYS ASN ASP ILE ASP ILE ALA LYS ALA ILE SER SEQRES 15 B 423 MET MET LYS LYS GLU PHE TYR PHE VAL ARG THR LYS VAL SEQRES 16 B 423 ASP SER ASP ILE THR ASN GLU ALA ASP GLY LYS PRO GLN SEQRES 17 B 423 THR PHE ASP LYS GLU LYS VAL LEU GLN ASP ILE ARG LEU SEQRES 18 B 423 ASN CYS VAL ASN THR PHE ARG GLU ASN GLY ILE ALA GLU SEQRES 19 B 423 PRO PRO ILE PHE LEU LEU SER ASN LYS ASN VAL CYS HIS SEQRES 20 B 423 TYR ASP PHE PRO VAL LEU MET ASP LYS LEU ILE SER ASP SEQRES 21 B 423 LEU PRO ILE TYR LYS ARG HIS ASN PHE MET VAL SER LEU SEQRES 22 B 423 PRO ASN ILE THR ASP SER VAL ILE GLU LYS LYS ARG GLN SEQRES 23 B 423 PHE LEU LYS GLN ARG ILE TRP LEU GLU GLY PHE ALA ALA SEQRES 24 B 423 ASP LEU VAL ASN ILE ILE PRO SER LEU THR PHE LEU LEU SEQRES 25 B 423 ASP SER ASP LEU GLU THR LEU LYS LYS SER MET LYS PHE SEQRES 26 B 423 TYR ARG THR VAL PHE GLY VAL ASP GLU THR SER LEU GLN SEQRES 27 B 423 ARG LEU ALA ARG ASP TRP GLU ILE GLU VAL ASP GLN VAL SEQRES 28 B 423 GLU ALA MET ILE LYS SER PRO ALA VAL PHE LYS PRO THR SEQRES 29 B 423 ASP GLU GLU THR ILE GLN GLU ARG LEU SER ARG TYR ILE SEQRES 30 B 423 GLN GLU PHE CYS LEU ALA ASN GLY TYR LEU LEU PRO LYS SEQRES 31 B 423 ASN SER PHE LEU LYS GLU ILE PHE TYR LEU LYS TYR TYR SEQRES 32 B 423 PHE LEU ASP MET VAL THR GLU ASP ALA LYS THR LEU LEU SEQRES 33 B 423 LYS GLU ILE CYS LEU ARG ASN HET ADP A 601 27 HET MG A 602 1 HET EDO A 603 4 HET EDO A 604 4 HET EDO A 605 4 HET EDO A 606 4 HET EDO A 607 4 HET EDO B 601 4 HET EDO B 602 4 HET GDP B 603 28 HET EDO B 604 4 HET EDO B 605 4 HET EDO B 606 4 HETNAM ADP ADENOSINE-5'-DIPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM EDO 1,2-ETHANEDIOL HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETSYN EDO ETHYLENE GLYCOL FORMUL 3 ADP C10 H15 N5 O10 P2 FORMUL 4 MG MG 2+ FORMUL 5 EDO 10(C2 H6 O2) FORMUL 12 GDP C10 H15 N5 O11 P2 FORMUL 16 HOH *515(H2 O) HELIX 1 1 GLY A 177 GLU A 188 1 12 HELIX 2 2 GLU A 188 LEU A 200 1 13 HELIX 3 3 PRO A 203 TRP A 215 1 13 HELIX 4 4 SER A 272 ALA A 286 1 15 HELIX 5 5 PRO A 294 ARG A 301 1 8 HELIX 6 6 LEU A 344 LEU A 354 1 11 HELIX 7 7 PHE A 363 LYS A 383 1 21 HELIX 8 8 THR A 391 ASP A 393 5 3 HELIX 9 9 ASP A 407 LEU A 411 5 5 HELIX 10 10 SER A 421 VAL A 423 5 3 HELIX 11 11 PRO A 424 ALA A 428 5 5 HELIX 12 12 PRO A 429 LEU A 433 5 5 HELIX 13 13 THR A 441 LEU A 459 1 19 HELIX 14 14 PRO A 496 LEU A 507 1 12 HELIX 15 15 LEU A 516 MET A 521 1 6 HELIX 16 16 THR A 523 SER A 538 1 16 HELIX 17 17 ASP B 15 LYS B 25 1 11 HELIX 18 18 SER B 35 GLY B 49 1 15 HELIX 19 19 ASN B 50 SER B 68 1 19 HELIX 20 20 GLY B 81 ARG B 90 1 10 HELIX 21 21 GLY B 103 MET B 109 1 7 HELIX 22 22 GLY B 129 THR B 133 5 5 HELIX 23 23 PRO B 136 MET B 144 1 9 HELIX 24 24 LYS B 145 TYR B 149 5 5 HELIX 25 25 LYS B 161 MET B 174 1 14 HELIX 26 26 LYS B 184 LYS B 196 1 13 HELIX 27 27 PRO B 197 PHE B 200 5 4 HELIX 28 28 ASP B 201 ASN B 220 1 20 HELIX 29 29 ASP B 239 LEU B 251 1 13 HELIX 30 30 PRO B 252 TYR B 254 5 3 HELIX 31 31 LYS B 255 LEU B 263 1 9 HELIX 32 32 THR B 267 ALA B 289 1 23 HELIX 33 33 ILE B 295 THR B 299 5 5 HELIX 34 34 LEU B 302 PHE B 320 1 19 HELIX 35 35 ASP B 323 ARG B 329 1 7 HELIX 36 36 ASP B 339 ALA B 343 1 5 HELIX 37 37 MET B 344 ILE B 345 5 2 HELIX 38 38 LYS B 346 VAL B 350 5 5 HELIX 39 39 THR B 358 GLY B 375 1 18 HELIX 40 40 LYS B 385 CYS B 410 1 26 SHEET 1 A 7 GLU A 220 SER A 225 0 SHEET 2 A 7 GLU A 231 VAL A 242 -1 O ARG A 232 N VAL A 223 SHEET 3 A 7 SER A 246 ASP A 253 -1 O LEU A 250 N GLU A 238 SHEET 4 A 7 GLU A 258 THR A 266 -1 O GLU A 258 N ASP A 253 SHEET 5 A 7 VAL A 330 MET A 337 -1 O MET A 337 N ALA A 261 SHEET 6 A 7 ASP A 308 VAL A 312 -1 N VAL A 310 O LEU A 334 SHEET 7 A 7 GLU A 220 SER A 225 -1 N ASP A 224 O ALA A 311 SHEET 1 B 3 VAL A 342 ASP A 343 0 SHEET 2 B 3 LEU A 395 ILE A 397 -1 O ILE A 397 N VAL A 342 SHEET 3 B 3 LEU A 403 LEU A 405 -1 O MET A 404 N PHE A 396 SHEET 1 C 2 LEU A 385 VAL A 386 0 SHEET 2 C 2 ARG A 412 LYS A 413 -1 O ARG A 412 N VAL A 386 SHEET 1 D 2 ARG A 417 PRO A 419 0 SHEET 2 D 2 THR A 437 THR A 439 -1 O ALA A 438 N GLY A 418 SHEET 1 E 6 HIS B 112 LYS B 115 0 SHEET 2 E 6 VAL B 122 ASP B 126 -1 O PHE B 124 N TYR B 114 SHEET 3 E 6 LEU B 70 GLY B 76 1 N VAL B 72 O TRP B 125 SHEET 4 E 6 PHE B 151 ALA B 157 1 O ILE B 155 N THR B 75 SHEET 5 E 6 TYR B 179 THR B 183 1 O TYR B 179 N ILE B 154 SHEET 6 E 6 ILE B 227 LEU B 229 1 O PHE B 228 N ARG B 182 SSBOND 1 CYS A 458 CYS A 492 1555 1555 2.03 LINK O1B ADP A 601 MG MG A 602 1555 1555 2.05 LINK O1A ADP A 601 MG MG A 602 1555 1555 2.07 LINK MG MG A 602 O HOH A 897 1555 1555 2.23 LINK MG MG A 602 O HOH A 965 1555 1555 3.00 LINK MG MG A 602 O HOH A 986 1555 1555 2.36 CISPEP 1 ALA A 176 GLY A 177 0 -12.77 CISPEP 2 GLY A 268 ALA A 269 0 11.64 CISPEP 3 SER A 322 PRO A 323 0 1.14 SITE 1 AC1 22 ARG A 241 GLY A 243 ASP A 244 ARG A 245 SITE 2 AC1 22 SER A 246 VAL A 248 ALA A 261 LYS A 263 SITE 3 AC1 22 MET A 337 PRO A 338 ALA A 340 ASP A 343 SITE 4 AC1 22 ASP A 393 PHE A 396 MG A 602 EDO A 603 SITE 5 AC1 22 HOH A 729 HOH A 763 HOH A 863 HOH A 888 SITE 6 AC1 22 HOH A 897 HOH A 965 SITE 1 AC2 5 ASP A 393 ADP A 601 HOH A 897 HOH A 965 SITE 2 AC2 5 HOH A 986 SITE 1 AC3 6 LEU A 304 MET A 337 GLY A 406 ASP A 407 SITE 2 AC3 6 ADP A 601 HOH A 888 SITE 1 AC4 4 GLU A 258 ASP A 259 PHE A 260 PRO A 338 SITE 1 AC5 9 SER A 359 THR A 360 GLU A 361 ARG A 417 SITE 2 AC5 9 SER A 436 THR A 437 HOH A 737 HOH A 969 SITE 3 AC5 9 ASN B 215 SITE 1 AC6 7 ARG A 196 ALA A 199 LEU A 200 LEU A 240 SITE 2 AC6 7 ARG A 241 VAL A 242 HOH A 807 SITE 1 AC7 9 ALA A 377 LEU A 380 GLN A 381 HIS A 442 SITE 2 AC7 9 ASP A 445 ALA A 446 LEU A 516 PRO A 517 SITE 3 AC7 9 HOH A 985 SITE 1 AC8 5 LEU A 357 THR B 158 ARG B 182 ASN B 212 SITE 2 AC8 5 HOH B 815 SITE 1 AC9 7 ARG A 358 SER A 359 THR A 360 ASN B 212 SITE 2 AC9 7 ASN B 215 THR B 216 GLU B 219 SITE 1 BC1 14 GLY B 79 SER B 80 GLY B 81 LYS B 82 SITE 2 BC1 14 SER B 83 SER B 84 THR B 102 LYS B 184 SITE 3 BC1 14 ASP B 186 SER B 231 ASN B 232 LYS B 233 SITE 4 BC1 14 HOH B 718 HOH B 786 SITE 1 BC2 6 MET B 46 THR B 54 ASP B 290 LEU B 291 SITE 2 BC2 6 HOH B 776 HOH B 837 SITE 1 BC3 5 GLU B 192 THR B 199 ASP B 201 LYS B 204 SITE 2 BC3 5 VAL B 205 SITE 1 BC4 7 THR B 158 LYS B 184 SER B 187 ASP B 188 SITE 2 BC4 7 ASN B 191 HOH B 701 HOH B 816 CRYST1 53.400 53.700 86.800 104.70 95.30 111.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018727 0.007188 0.004158 0.00000 SCALE2 0.000000 0.019947 0.006471 0.00000 SCALE3 0.000000 0.000000 0.012164 0.00000