HEADER TRANSFERASE/TRANSFERASE INHIBITOR 26-JUL-13 4LVD TITLE FRAGMENT-BASED IDENTIFICATION OF AMIDES DERIVED FROM TRANS-2-(PYRIDIN- TITLE 2 3-YL)CYCLOPROPANECARBOXYLIC ACID AS POTENT INHIBITORS OF HUMAN TITLE 3 NICOTINAMIDE PHOSPHORIBOSYLTRANSFERASE (NAMPT) COMPND MOL_ID: 1; COMPND 2 MOLECULE: NICOTINAMIDE PHOSPHORIBOSYLTRANSFERASE; COMPND 3 CHAIN: B, A; COMPND 4 SYNONYM: NAMPRTASE, NAMPT, PRE-B-CELL COLONY-ENHANCING FACTOR 1, PRE- COMPND 5 B CELL-ENHANCING FACTOR, VISFATIN; COMPND 6 EC: 2.4.2.12; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: NAMPT, PBEF, PBEF1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS TRANSFERASE, TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.M.GIANNETTI,X.ZHENG,N.SKELTON,W.WANG,B.BRAVO,Y.FENG,J.GUNZNER- AUTHOR 2 TOSTE,Y.HO,R.HUA,C.WANG,Q.ZHAO,B.M.LIEDERER,Y.LIU,T.O'BRIEN,J.OEH, AUTHOR 3 D.SAMPATH,Y.SHEN,L.WANG,H.WU,Y.XIAO,P.YUEN,M.ZAK,G.ZHAO, AUTHOR 4 P.S.DRAGOVICH REVDAT 4 28-FEB-24 4LVD 1 REMARK SEQADV REVDAT 3 24-JAN-18 4LVD 1 AUTHOR REMARK REVDAT 2 02-OCT-13 4LVD 1 JRNL REVDAT 1 25-SEP-13 4LVD 0 JRNL AUTH X.ZHENG,K.W.BAIR,P.BAUER,T.BAUMEISTER,K.K.BOWMAN, JRNL AUTH 2 A.J.BUCKMELTER,M.CALIGIURI,K.H.CLODFELTER,Y.FENG,B.HAN, JRNL AUTH 3 Y.C.HO,N.KLEY,H.LI,X.LIANG,B.M.LIEDERER,J.LIN,J.LY, JRNL AUTH 4 T.O'BRIEN,J.OEH,A.OH,D.J.REYNOLDS,D.SAMPATH,G.SHARMA, JRNL AUTH 5 N.SKELTON,C.C.SMITH,J.TREMAYNE,L.WANG,W.WANG,Z.WANG,H.WU, JRNL AUTH 6 J.WU,Y.XIAO,G.YANG,P.W.YUEN,M.ZAK,P.S.DRAGOVICH JRNL TITL IDENTIFICATION OF AMIDES DERIVED FROM JRNL TITL 2 1H-PYRAZOLO[3,4-B]PYRIDINE-5-CARBOXYLIC ACID AS POTENT JRNL TITL 3 INHIBITORS OF HUMAN NICOTINAMIDE PHOSPHORIBOSYLTRANSFERASE JRNL TITL 4 (NAMPT). JRNL REF BIOORG.MED.CHEM.LETT. V. 23 5488 2013 JRNL REFN ISSN 0960-894X JRNL PMID 24021463 JRNL DOI 10.1016/J.BMCL.2013.08.074 REMARK 2 REMARK 2 RESOLUTION. 1.75 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.75 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 31.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 104785 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.179 REMARK 3 R VALUE (WORKING SET) : 0.178 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5239 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 30.9950 - 5.4189 1.00 3392 193 0.1805 0.2156 REMARK 3 2 5.4189 - 4.3048 1.00 3340 176 0.1489 0.1597 REMARK 3 3 4.3048 - 3.7617 1.00 3367 145 0.1494 0.1597 REMARK 3 4 3.7617 - 3.4182 1.00 3381 154 0.1622 0.1971 REMARK 3 5 3.4182 - 3.1735 1.00 3341 163 0.1747 0.2289 REMARK 3 6 3.1735 - 2.9866 1.00 3329 188 0.1681 0.1844 REMARK 3 7 2.9866 - 2.8371 1.00 3336 177 0.1811 0.2004 REMARK 3 8 2.8371 - 2.7137 1.00 3321 173 0.1752 0.2096 REMARK 3 9 2.7137 - 2.6093 1.00 3298 198 0.1727 0.2160 REMARK 3 10 2.6093 - 2.5193 1.00 3310 188 0.1771 0.2462 REMARK 3 11 2.5193 - 2.4405 1.00 3335 167 0.1705 0.1935 REMARK 3 12 2.4405 - 2.3708 1.00 3362 174 0.1689 0.2142 REMARK 3 13 2.3708 - 2.3084 1.00 3296 188 0.1745 0.2104 REMARK 3 14 2.3084 - 2.2521 1.00 3316 169 0.1725 0.1961 REMARK 3 15 2.2521 - 2.2009 1.00 3338 182 0.1697 0.2125 REMARK 3 16 2.2009 - 2.1541 1.00 3334 167 0.1773 0.2132 REMARK 3 17 2.1541 - 2.1110 1.00 3317 179 0.1777 0.2121 REMARK 3 18 2.1110 - 2.0712 1.00 3294 165 0.1835 0.2244 REMARK 3 19 2.0712 - 2.0342 1.00 3364 151 0.1862 0.2373 REMARK 3 20 2.0342 - 1.9997 1.00 3364 162 0.1858 0.2268 REMARK 3 21 1.9997 - 1.9675 1.00 3287 185 0.1867 0.2394 REMARK 3 22 1.9675 - 1.9372 1.00 3301 181 0.1965 0.2589 REMARK 3 23 1.9372 - 1.9087 1.00 3358 175 0.1922 0.2540 REMARK 3 24 1.9087 - 1.8818 1.00 3317 160 0.2023 0.2270 REMARK 3 25 1.8818 - 1.8564 1.00 3320 198 0.2162 0.2520 REMARK 3 26 1.8564 - 1.8323 1.00 3311 141 0.2232 0.2636 REMARK 3 27 1.8323 - 1.8094 1.00 3336 172 0.2396 0.2973 REMARK 3 28 1.8094 - 1.7876 1.00 3320 194 0.2510 0.2736 REMARK 3 29 1.7876 - 1.7668 1.00 3237 185 0.2605 0.2970 REMARK 3 30 1.7668 - 1.7500 0.91 3024 189 0.2735 0.3069 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.600 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 7754 REMARK 3 ANGLE : 1.047 10508 REMARK 3 CHIRALITY : 0.073 1148 REMARK 3 PLANARITY : 0.005 1335 REMARK 3 DIHEDRAL : 13.011 2857 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ( CHAIN A AND ( RESID 8:486 OR RESID 603:603 OR REMARK 3 RESID 601:602 OR RESID 701:1203 ) ) OR ( CHAIN B AND REMARK 3 ( RESID 8:486 OR RESID 603:603 OR RESID 601:602 OR REMARK 3 RESID 701:1186 ) ) REMARK 3 ORIGIN FOR THE GROUP (A): 12.0407 -7.3522 18.7703 REMARK 3 T TENSOR REMARK 3 T11: 0.0679 T22: 0.0709 REMARK 3 T33: 0.0721 T12: 0.0008 REMARK 3 T13: 0.0019 T23: 0.0065 REMARK 3 L TENSOR REMARK 3 L11: 0.1106 L22: 0.2967 REMARK 3 L33: 0.2813 L12: -0.0070 REMARK 3 L13: -0.0029 L23: 0.0629 REMARK 3 S TENSOR REMARK 3 S11: 0.0113 S12: -0.0043 S13: -0.0010 REMARK 3 S21: 0.0399 S22: 0.0107 S23: 0.0264 REMARK 3 S31: 0.0062 S32: -0.0203 S33: -0.0185 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4LVD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-AUG-13. REMARK 100 THE DEPOSITION ID IS D_1000081133. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-MAR-12 REMARK 200 TEMPERATURE (KELVIN) : 93 REMARK 200 PH : 8.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97922 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 104834 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.750 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.75 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.81 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.04 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2UL + 0.2UL DROPS CONTAINING 6MG/ML REMARK 280 NAMPT, 0.1M SODIUM PHOSPHATE, 25-29% POLYETHYLENE GLYCOL 3350, REMARK 280 0.2M NACL, PH 8.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 53.01950 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 9650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -68.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 1 REMARK 465 ASN B 2 REMARK 465 PRO B 3 REMARK 465 ALA B 4 REMARK 465 ALA B 5 REMARK 465 GLU B 6 REMARK 465 ALA B 7 REMARK 465 LYS B 43 REMARK 465 THR B 44 REMARK 465 GLU B 45 REMARK 465 ASN B 46 REMARK 465 SER B 47 REMARK 465 LYS B 48 REMARK 465 LEU B 49 REMARK 465 ARG B 50 REMARK 465 LYS B 51 REMARK 465 VAL B 52 REMARK 465 GLU B 487 REMARK 465 ALA B 488 REMARK 465 ALA B 489 REMARK 465 HIS B 490 REMARK 465 HIS B 491 REMARK 465 LEU B 492 REMARK 465 GLU B 493 REMARK 465 HIS B 494 REMARK 465 HIS B 495 REMARK 465 HIS B 496 REMARK 465 HIS B 497 REMARK 465 HIS B 498 REMARK 465 HIS B 499 REMARK 465 HIS B 500 REMARK 465 HIS B 501 REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 PRO A 3 REMARK 465 ALA A 4 REMARK 465 ALA A 5 REMARK 465 GLU A 6 REMARK 465 ALA A 7 REMARK 465 LYS A 43 REMARK 465 THR A 44 REMARK 465 GLU A 45 REMARK 465 ASN A 46 REMARK 465 SER A 47 REMARK 465 LYS A 48 REMARK 465 LEU A 49 REMARK 465 ARG A 50 REMARK 465 LYS A 51 REMARK 465 VAL A 52 REMARK 465 GLU A 487 REMARK 465 ALA A 488 REMARK 465 ALA A 489 REMARK 465 HIS A 490 REMARK 465 HIS A 491 REMARK 465 LEU A 492 REMARK 465 GLU A 493 REMARK 465 HIS A 494 REMARK 465 HIS A 495 REMARK 465 HIS A 496 REMARK 465 HIS A 497 REMARK 465 HIS A 498 REMARK 465 HIS A 499 REMARK 465 HIS A 500 REMARK 465 HIS A 501 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 GLU A 326 CA CB CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLU B 475 O HOH B 920 2.10 REMARK 500 O1 PO4 B 602 O HOH B 1177 2.11 REMARK 500 O HOH B 882 O HOH B 978 2.15 REMARK 500 O HOH A 1130 O HOH A 1132 2.16 REMARK 500 O HOH B 978 O HOH B 1132 2.16 REMARK 500 O HOH B 883 O HOH B 930 2.18 REMARK 500 O HOH A 907 O HOH A 1063 2.18 REMARK 500 O HOH B 885 O HOH B 1060 2.18 REMARK 500 OD1 ASP B 354 O HOH B 1104 2.19 REMARK 500 OE2 GLU A 187 O HOH A 1190 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR B 231 -60.36 -128.21 REMARK 500 PHE B 269 63.83 -116.31 REMARK 500 TYR B 281 -51.46 -124.30 REMARK 500 GLU B 293 -67.31 -130.81 REMARK 500 ASP B 313 22.40 -153.46 REMARK 500 ASP B 416 69.20 -160.56 REMARK 500 PHE A 96 127.00 172.35 REMARK 500 TYR A 231 -59.11 -129.82 REMARK 500 PHE A 269 61.80 -115.30 REMARK 500 GLU A 293 -66.23 -132.36 REMARK 500 ALA A 306 59.76 -140.36 REMARK 500 ASP A 313 21.72 -149.21 REMARK 500 ASP A 416 72.68 -161.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1EB B 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1EB A 603 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4LV9 RELATED DB: PDB REMARK 900 RELATED ID: 4LVA RELATED DB: PDB REMARK 900 RELATED ID: 4LVB RELATED DB: PDB REMARK 900 RELATED ID: 4LVF RELATED DB: PDB REMARK 900 RELATED ID: 4LVG RELATED DB: PDB REMARK 900 RELATED ID: 4M6P RELATED DB: PDB REMARK 900 RELATED ID: 4M6Q RELATED DB: PDB DBREF 4LVD B 1 491 UNP P43490 NAMPT_HUMAN 1 491 DBREF 4LVD A 1 491 UNP P43490 NAMPT_HUMAN 1 491 SEQADV 4LVD LEU B 492 UNP P43490 EXPRESSION TAG SEQADV 4LVD GLU B 493 UNP P43490 EXPRESSION TAG SEQADV 4LVD HIS B 494 UNP P43490 EXPRESSION TAG SEQADV 4LVD HIS B 495 UNP P43490 EXPRESSION TAG SEQADV 4LVD HIS B 496 UNP P43490 EXPRESSION TAG SEQADV 4LVD HIS B 497 UNP P43490 EXPRESSION TAG SEQADV 4LVD HIS B 498 UNP P43490 EXPRESSION TAG SEQADV 4LVD HIS B 499 UNP P43490 EXPRESSION TAG SEQADV 4LVD HIS B 500 UNP P43490 EXPRESSION TAG SEQADV 4LVD HIS B 501 UNP P43490 EXPRESSION TAG SEQADV 4LVD LEU A 492 UNP P43490 EXPRESSION TAG SEQADV 4LVD GLU A 493 UNP P43490 EXPRESSION TAG SEQADV 4LVD HIS A 494 UNP P43490 EXPRESSION TAG SEQADV 4LVD HIS A 495 UNP P43490 EXPRESSION TAG SEQADV 4LVD HIS A 496 UNP P43490 EXPRESSION TAG SEQADV 4LVD HIS A 497 UNP P43490 EXPRESSION TAG SEQADV 4LVD HIS A 498 UNP P43490 EXPRESSION TAG SEQADV 4LVD HIS A 499 UNP P43490 EXPRESSION TAG SEQADV 4LVD HIS A 500 UNP P43490 EXPRESSION TAG SEQADV 4LVD HIS A 501 UNP P43490 EXPRESSION TAG SEQRES 1 B 501 MET ASN PRO ALA ALA GLU ALA GLU PHE ASN ILE LEU LEU SEQRES 2 B 501 ALA THR ASP SER TYR LYS VAL THR HIS TYR LYS GLN TYR SEQRES 3 B 501 PRO PRO ASN THR SER LYS VAL TYR SER TYR PHE GLU CYS SEQRES 4 B 501 ARG GLU LYS LYS THR GLU ASN SER LYS LEU ARG LYS VAL SEQRES 5 B 501 LYS TYR GLU GLU THR VAL PHE TYR GLY LEU GLN TYR ILE SEQRES 6 B 501 LEU ASN LYS TYR LEU LYS GLY LYS VAL VAL THR LYS GLU SEQRES 7 B 501 LYS ILE GLN GLU ALA LYS ASP VAL TYR LYS GLU HIS PHE SEQRES 8 B 501 GLN ASP ASP VAL PHE ASN GLU LYS GLY TRP ASN TYR ILE SEQRES 9 B 501 LEU GLU LYS TYR ASP GLY HIS LEU PRO ILE GLU ILE LYS SEQRES 10 B 501 ALA VAL PRO GLU GLY PHE VAL ILE PRO ARG GLY ASN VAL SEQRES 11 B 501 LEU PHE THR VAL GLU ASN THR ASP PRO GLU CYS TYR TRP SEQRES 12 B 501 LEU THR ASN TRP ILE GLU THR ILE LEU VAL GLN SER TRP SEQRES 13 B 501 TYR PRO ILE THR VAL ALA THR ASN SER ARG GLU GLN LYS SEQRES 14 B 501 LYS ILE LEU ALA LYS TYR LEU LEU GLU THR SER GLY ASN SEQRES 15 B 501 LEU ASP GLY LEU GLU TYR LYS LEU HIS ASP PHE GLY TYR SEQRES 16 B 501 ARG GLY VAL SER SER GLN GLU THR ALA GLY ILE GLY ALA SEQRES 17 B 501 SER ALA HIS LEU VAL ASN PHE LYS GLY THR ASP THR VAL SEQRES 18 B 501 ALA GLY LEU ALA LEU ILE LYS LYS TYR TYR GLY THR LYS SEQRES 19 B 501 ASP PRO VAL PRO GLY TYR SER VAL PRO ALA ALA GLU HIS SEQRES 20 B 501 SER THR ILE THR ALA TRP GLY LYS ASP HIS GLU LYS ASP SEQRES 21 B 501 ALA PHE GLU HIS ILE VAL THR GLN PHE SER SER VAL PRO SEQRES 22 B 501 VAL SER VAL VAL SER ASP SER TYR ASP ILE TYR ASN ALA SEQRES 23 B 501 CYS GLU LYS ILE TRP GLY GLU ASP LEU ARG HIS LEU ILE SEQRES 24 B 501 VAL SER ARG SER THR GLN ALA PRO LEU ILE ILE ARG PRO SEQRES 25 B 501 ASP SER GLY ASN PRO LEU ASP THR VAL LEU LYS VAL LEU SEQRES 26 B 501 GLU ILE LEU GLY LYS LYS PHE PRO VAL THR GLU ASN SER SEQRES 27 B 501 LYS GLY TYR LYS LEU LEU PRO PRO TYR LEU ARG VAL ILE SEQRES 28 B 501 GLN GLY ASP GLY VAL ASP ILE ASN THR LEU GLN GLU ILE SEQRES 29 B 501 VAL GLU GLY MET LYS GLN LYS MET TRP SER ILE GLU ASN SEQRES 30 B 501 ILE ALA PHE GLY SER GLY GLY GLY LEU LEU GLN LYS LEU SEQRES 31 B 501 THR ARG ASP LEU LEU ASN CYS SER PHE LYS CYS SER TYR SEQRES 32 B 501 VAL VAL THR ASN GLY LEU GLY ILE ASN VAL PHE LYS ASP SEQRES 33 B 501 PRO VAL ALA ASP PRO ASN LYS ARG SER LYS LYS GLY ARG SEQRES 34 B 501 LEU SER LEU HIS ARG THR PRO ALA GLY ASN PHE VAL THR SEQRES 35 B 501 LEU GLU GLU GLY LYS GLY ASP LEU GLU GLU TYR GLY GLN SEQRES 36 B 501 ASP LEU LEU HIS THR VAL PHE LYS ASN GLY LYS VAL THR SEQRES 37 B 501 LYS SER TYR SER PHE ASP GLU ILE ARG LYS ASN ALA GLN SEQRES 38 B 501 LEU ASN ILE GLU LEU GLU ALA ALA HIS HIS LEU GLU HIS SEQRES 39 B 501 HIS HIS HIS HIS HIS HIS HIS SEQRES 1 A 501 MET ASN PRO ALA ALA GLU ALA GLU PHE ASN ILE LEU LEU SEQRES 2 A 501 ALA THR ASP SER TYR LYS VAL THR HIS TYR LYS GLN TYR SEQRES 3 A 501 PRO PRO ASN THR SER LYS VAL TYR SER TYR PHE GLU CYS SEQRES 4 A 501 ARG GLU LYS LYS THR GLU ASN SER LYS LEU ARG LYS VAL SEQRES 5 A 501 LYS TYR GLU GLU THR VAL PHE TYR GLY LEU GLN TYR ILE SEQRES 6 A 501 LEU ASN LYS TYR LEU LYS GLY LYS VAL VAL THR LYS GLU SEQRES 7 A 501 LYS ILE GLN GLU ALA LYS ASP VAL TYR LYS GLU HIS PHE SEQRES 8 A 501 GLN ASP ASP VAL PHE ASN GLU LYS GLY TRP ASN TYR ILE SEQRES 9 A 501 LEU GLU LYS TYR ASP GLY HIS LEU PRO ILE GLU ILE LYS SEQRES 10 A 501 ALA VAL PRO GLU GLY PHE VAL ILE PRO ARG GLY ASN VAL SEQRES 11 A 501 LEU PHE THR VAL GLU ASN THR ASP PRO GLU CYS TYR TRP SEQRES 12 A 501 LEU THR ASN TRP ILE GLU THR ILE LEU VAL GLN SER TRP SEQRES 13 A 501 TYR PRO ILE THR VAL ALA THR ASN SER ARG GLU GLN LYS SEQRES 14 A 501 LYS ILE LEU ALA LYS TYR LEU LEU GLU THR SER GLY ASN SEQRES 15 A 501 LEU ASP GLY LEU GLU TYR LYS LEU HIS ASP PHE GLY TYR SEQRES 16 A 501 ARG GLY VAL SER SER GLN GLU THR ALA GLY ILE GLY ALA SEQRES 17 A 501 SER ALA HIS LEU VAL ASN PHE LYS GLY THR ASP THR VAL SEQRES 18 A 501 ALA GLY LEU ALA LEU ILE LYS LYS TYR TYR GLY THR LYS SEQRES 19 A 501 ASP PRO VAL PRO GLY TYR SER VAL PRO ALA ALA GLU HIS SEQRES 20 A 501 SER THR ILE THR ALA TRP GLY LYS ASP HIS GLU LYS ASP SEQRES 21 A 501 ALA PHE GLU HIS ILE VAL THR GLN PHE SER SER VAL PRO SEQRES 22 A 501 VAL SER VAL VAL SER ASP SER TYR ASP ILE TYR ASN ALA SEQRES 23 A 501 CYS GLU LYS ILE TRP GLY GLU ASP LEU ARG HIS LEU ILE SEQRES 24 A 501 VAL SER ARG SER THR GLN ALA PRO LEU ILE ILE ARG PRO SEQRES 25 A 501 ASP SER GLY ASN PRO LEU ASP THR VAL LEU LYS VAL LEU SEQRES 26 A 501 GLU ILE LEU GLY LYS LYS PHE PRO VAL THR GLU ASN SER SEQRES 27 A 501 LYS GLY TYR LYS LEU LEU PRO PRO TYR LEU ARG VAL ILE SEQRES 28 A 501 GLN GLY ASP GLY VAL ASP ILE ASN THR LEU GLN GLU ILE SEQRES 29 A 501 VAL GLU GLY MET LYS GLN LYS MET TRP SER ILE GLU ASN SEQRES 30 A 501 ILE ALA PHE GLY SER GLY GLY GLY LEU LEU GLN LYS LEU SEQRES 31 A 501 THR ARG ASP LEU LEU ASN CYS SER PHE LYS CYS SER TYR SEQRES 32 A 501 VAL VAL THR ASN GLY LEU GLY ILE ASN VAL PHE LYS ASP SEQRES 33 A 501 PRO VAL ALA ASP PRO ASN LYS ARG SER LYS LYS GLY ARG SEQRES 34 A 501 LEU SER LEU HIS ARG THR PRO ALA GLY ASN PHE VAL THR SEQRES 35 A 501 LEU GLU GLU GLY LYS GLY ASP LEU GLU GLU TYR GLY GLN SEQRES 36 A 501 ASP LEU LEU HIS THR VAL PHE LYS ASN GLY LYS VAL THR SEQRES 37 A 501 LYS SER TYR SER PHE ASP GLU ILE ARG LYS ASN ALA GLN SEQRES 38 A 501 LEU ASN ILE GLU LEU GLU ALA ALA HIS HIS LEU GLU HIS SEQRES 39 A 501 HIS HIS HIS HIS HIS HIS HIS HET PO4 B 601 5 HET PO4 B 602 5 HET 1EB B 603 15 HET EDO B 604 4 HET PO4 A 601 5 HET PO4 A 602 5 HET 1EB A 603 15 HETNAM PO4 PHOSPHATE ION HETNAM 1EB N-(4-NITROPHENYL)CYCLOPROPANECARBOXAMIDE HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 PO4 4(O4 P 3-) FORMUL 5 1EB 2(C10 H10 N2 O3) FORMUL 6 EDO C2 H6 O2 FORMUL 10 HOH *989(H2 O) HELIX 1 1 ASN B 10 ALA B 14 5 5 HELIX 2 2 ASP B 16 GLN B 25 5 10 HELIX 3 3 GLY B 61 LEU B 70 1 10 HELIX 4 4 THR B 76 PHE B 91 1 16 HELIX 5 5 ASN B 97 ASP B 109 1 13 HELIX 6 6 ASP B 138 TYR B 142 5 5 HELIX 7 7 TRP B 143 ILE B 148 1 6 HELIX 8 8 ILE B 148 GLN B 154 1 7 HELIX 9 9 SER B 155 GLY B 181 1 27 HELIX 10 10 GLY B 185 TYR B 188 5 4 HELIX 11 11 GLY B 194 VAL B 198 5 5 HELIX 12 12 SER B 200 LEU B 212 1 13 HELIX 13 13 VAL B 221 TYR B 231 1 11 HELIX 14 14 GLU B 246 ALA B 252 1 7 HELIX 15 15 TRP B 253 ASP B 256 5 4 HELIX 16 16 HIS B 257 PHE B 269 1 13 HELIX 17 17 ASP B 282 LYS B 289 1 8 HELIX 18 18 LEU B 295 VAL B 300 1 6 HELIX 19 19 ASN B 316 PHE B 332 1 17 HELIX 20 20 ASP B 357 LYS B 371 1 15 HELIX 21 21 SER B 374 GLU B 376 5 3 HELIX 22 22 GLY B 383 GLN B 388 1 6 HELIX 23 23 ASP B 420 ARG B 424 5 5 HELIX 24 24 GLY B 446 GLU B 451 5 6 HELIX 25 25 SER B 472 ALA B 480 1 9 HELIX 26 26 ASN A 10 ALA A 14 5 5 HELIX 27 27 ASP A 16 GLN A 25 5 10 HELIX 28 28 GLY A 61 LEU A 70 1 10 HELIX 29 29 THR A 76 GLN A 92 1 17 HELIX 30 30 ASN A 97 ASP A 109 1 13 HELIX 31 31 ASP A 138 TYR A 142 5 5 HELIX 32 32 TRP A 143 ILE A 148 1 6 HELIX 33 33 ILE A 148 GLN A 154 1 7 HELIX 34 34 SER A 155 GLY A 181 1 27 HELIX 35 35 GLY A 185 TYR A 188 5 4 HELIX 36 36 GLY A 194 VAL A 198 5 5 HELIX 37 37 SER A 200 LEU A 212 1 13 HELIX 38 38 VAL A 221 TYR A 231 1 11 HELIX 39 39 GLU A 246 ALA A 252 1 7 HELIX 40 40 TRP A 253 ASP A 256 5 4 HELIX 41 41 HIS A 257 PHE A 269 1 13 HELIX 42 42 ASP A 282 LYS A 289 1 8 HELIX 43 43 LEU A 295 VAL A 300 1 6 HELIX 44 44 ASN A 316 PHE A 332 1 17 HELIX 45 45 ASP A 357 LYS A 371 1 15 HELIX 46 46 SER A 374 GLU A 376 5 3 HELIX 47 47 GLY A 383 GLN A 388 1 6 HELIX 48 48 ASP A 420 ARG A 424 5 5 HELIX 49 49 GLY A 446 GLU A 451 5 6 HELIX 50 50 SER A 472 ALA A 480 1 9 SHEET 1 A 7 LEU B 409 ASN B 412 0 SHEET 2 A 7 CYS B 397 THR B 406 -1 N VAL B 404 O ILE B 411 SHEET 3 A 7 THR B 30 CYS B 39 -1 N TYR B 34 O TYR B 403 SHEET 4 A 7 VAL B 130 ASN B 136 -1 O VAL B 134 N SER B 35 SHEET 5 A 7 ILE B 114 ALA B 118 -1 N GLU B 115 O GLU B 135 SHEET 6 A 7 HIS B 459 LYS B 463 -1 O HIS B 459 N ALA B 118 SHEET 7 A 7 LYS B 466 VAL B 467 -1 O LYS B 466 N LYS B 463 SHEET 1 B 2 GLU B 56 VAL B 58 0 SHEET 2 B 2 VAL B 124 PRO B 126 -1 O ILE B 125 N THR B 57 SHEET 1 C 5 LEU B 190 ASP B 192 0 SHEET 2 C 5 ILE B 378 SER B 382 1 O PHE B 380 N HIS B 191 SHEET 3 C 5 LEU B 348 GLN B 352 1 N GLN B 352 O GLY B 381 SHEET 4 C 5 LEU B 308 ARG B 311 1 N ILE B 310 O ARG B 349 SHEET 5 C 5 VAL B 274 VAL B 277 1 N VAL B 274 O ILE B 309 SHEET 1 D 2 THR B 335 GLU B 336 0 SHEET 2 D 2 LYS B 342 LEU B 343 -1 O LEU B 343 N THR B 335 SHEET 1 E 2 SER B 431 ARG B 434 0 SHEET 2 E 2 PHE B 440 LEU B 443 -1 O VAL B 441 N HIS B 433 SHEET 1 F 7 LEU A 409 ASN A 412 0 SHEET 2 F 7 CYS A 397 THR A 406 -1 N VAL A 404 O ILE A 411 SHEET 3 F 7 THR A 30 CYS A 39 -1 N TYR A 34 O TYR A 403 SHEET 4 F 7 VAL A 130 ASN A 136 -1 O VAL A 134 N SER A 35 SHEET 5 F 7 ILE A 114 ALA A 118 -1 N GLU A 115 O GLU A 135 SHEET 6 F 7 HIS A 459 LYS A 463 -1 O PHE A 462 N ILE A 116 SHEET 7 F 7 LYS A 466 VAL A 467 -1 O LYS A 466 N LYS A 463 SHEET 1 G 2 GLU A 56 VAL A 58 0 SHEET 2 G 2 VAL A 124 PRO A 126 -1 O ILE A 125 N THR A 57 SHEET 1 H 5 LEU A 190 ASP A 192 0 SHEET 2 H 5 ILE A 378 SER A 382 1 O PHE A 380 N HIS A 191 SHEET 3 H 5 LEU A 348 GLN A 352 1 N GLN A 352 O ALA A 379 SHEET 4 H 5 LEU A 308 ARG A 311 1 N ILE A 310 O ARG A 349 SHEET 5 H 5 VAL A 274 VAL A 277 1 N VAL A 274 O ILE A 309 SHEET 1 I 2 THR A 335 GLU A 336 0 SHEET 2 I 2 LYS A 342 LEU A 343 -1 O LEU A 343 N THR A 335 SHEET 1 J 2 SER A 431 ARG A 434 0 SHEET 2 J 2 PHE A 440 LEU A 443 -1 O VAL A 441 N HIS A 433 SITE 1 AC1 9 ARG B 40 ARG B 392 SER B 398 LYS B 400 SITE 2 AC1 9 HOH B 712 HOH B 860 HOH B 902 HOH B1174 SITE 3 AC1 9 HOH B1175 SITE 1 AC2 9 GLY B 353 GLY B 355 GLY B 383 GLY B 384 SITE 2 AC2 9 GLY B 385 HOH B 783 HOH B1108 HOH B1110 SITE 3 AC2 9 HOH B1177 SITE 1 AC3 10 TYR A 18 HIS B 191 PHE B 193 ARG B 196 SITE 2 AC3 10 ASP B 219 SER B 241 VAL B 242 ALA B 244 SITE 3 AC3 10 ARG B 311 HOH B 891 SITE 1 AC4 5 GLY A 197 GLY A 384 PO4 A 602 ARG B 392 SITE 2 AC4 5 HOH B 922 SITE 1 AC5 9 ARG A 40 ARG A 392 SER A 398 LYS A 400 SITE 2 AC5 9 HOH A 828 HOH A 916 HOH A 917 HOH A 918 SITE 3 AC5 9 HOH B 909 SITE 1 AC6 9 GLY A 353 GLY A 355 GLY A 383 GLY A 384 SITE 2 AC6 9 GLY A 385 HOH A 810 HOH A 849 ARG B 392 SITE 3 AC6 9 EDO B 604 SITE 1 AC7 10 HIS A 191 PHE A 193 ARG A 196 ASP A 219 SITE 2 AC7 10 SER A 241 VAL A 242 ALA A 244 ARG A 311 SITE 3 AC7 10 HOH A 814 TYR B 18 CRYST1 60.423 106.039 83.055 90.00 96.26 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016550 0.000000 0.001815 0.00000 SCALE2 0.000000 0.009430 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012112 0.00000