HEADER DNA BINDING PROTEIN/DNA 26-JUL-13 4LVI TITLE MOBM RELAXASE DOMAIN (MOBV; MOB_PRE) BOUND TO PLASMID PMV158 ORIT DNA TITLE 2 (22NT). MN-BOUND CRYSTAL STRUCTURE AT PH 4.6 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PLASMID RECOMBINATION ENZYME; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RELAXASE DOMAIN OF MOBM PROTEIN; COMPND 5 SYNONYM: MOBILIZATION PROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: ACTTTAT OLIGONUCLEOTIDE; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: OLIGONUCLEOTIDE_1 MIMICKING PMV158 ORIT DNA HAIRPIN; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: ATAAAGTATAGTGTG OLIGONUCLEOTIDE; COMPND 14 CHAIN: C; COMPND 15 FRAGMENT: OLIGONUCLEOTIDE_2 MIMICKING PMV158 ORIT DNA HAIRPIN; COMPND 16 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS AGALACTIAE; SOURCE 3 ORGANISM_TAXID: 1311; SOURCE 4 GENE: PRE, MOB; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PQE-1; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 OTHER_DETAILS: OLIGONUCLEOTIDES WERE OBTAINED FROM BIOMERS (ULM, SOURCE 13 GERMANY).; SOURCE 14 MOL_ID: 3; SOURCE 15 SYNTHETIC: YES; SOURCE 16 OTHER_DETAILS: OLIGONUCLEOTIDES WERE OBTAINED FROM BIOMERS (ULM, SOURCE 17 GERMANY). KEYWDS PROTEIN-DNA COMPLEX, PFAM FAMILY: MOB_PRE (PF01076). MOBV FAMILY OF KEYWDS 2 RELAXASES, RELAXASE/ENDONUCLEASE, ORIT DNA, DNA BINDING PROTEIN-DNA KEYWDS 3 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR R.PLUTA,D.R.BOER,M.COLL REVDAT 3 28-FEB-24 4LVI 1 REMARK LINK REVDAT 2 18-OCT-17 4LVI 1 JRNL REVDAT 1 24-SEP-14 4LVI 0 JRNL AUTH R.PLUTA,D.R.BOER,F.LORENZO-DIAZ,S.RUSSI,H.GOMEZ, JRNL AUTH 2 C.FERNANDEZ-LOPEZ,R.PEREZ-LUQUE,M.OROZCO,M.ESPINOSA,M.COLL JRNL TITL STRUCTURAL BASIS OF A HISTIDINE-DNA NICKING/JOINING JRNL TITL 2 MECHANISM FOR GENE TRANSFER AND PROMISCUOUS SPREAD OF JRNL TITL 3 ANTIBIOTIC RESISTANCE. JRNL REF PROC. NATL. ACAD. SCI. V. 114 E6526 2017 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 28739894 JRNL DOI 10.1073/PNAS.1702971114 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.10 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 25154 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.206 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1301 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1801 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.22 REMARK 3 BIN R VALUE (WORKING SET) : 0.3620 REMARK 3 BIN FREE R VALUE SET COUNT : 99 REMARK 3 BIN FREE R VALUE : 0.3970 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1558 REMARK 3 NUCLEIC ACID ATOMS : 449 REMARK 3 HETEROGEN ATOMS : 7 REMARK 3 SOLVENT ATOMS : 134 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 48.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.62000 REMARK 3 B22 (A**2) : 1.62000 REMARK 3 B33 (A**2) : -5.25000 REMARK 3 B12 (A**2) : 1.62000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.147 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.143 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.137 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.641 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.964 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.946 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2193 ; 0.014 ; 0.017 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3050 ; 1.740 ; 1.745 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 214 ; 5.870 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 100 ;32.351 ;24.600 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 324 ;16.049 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;19.460 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 298 ; 0.122 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1558 ; 0.010 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 787 ; 2.052 ; 2.656 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 987 ; 2.671 ; 3.970 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1404 ; 2.539 ; 2.722 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 3614 ; 6.998 ;23.779 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 56 REMARK 3 ORIGIN FOR THE GROUP (A): -12.0778 42.3845 -7.4425 REMARK 3 T TENSOR REMARK 3 T11: 0.0641 T22: 0.1592 REMARK 3 T33: 0.2112 T12: 0.0096 REMARK 3 T13: -0.0022 T23: 0.0015 REMARK 3 L TENSOR REMARK 3 L11: 2.0945 L22: 0.8826 REMARK 3 L33: 6.0906 L12: -0.2911 REMARK 3 L13: 0.7161 L23: 0.8181 REMARK 3 S TENSOR REMARK 3 S11: 0.0683 S12: 0.4491 S13: 0.0035 REMARK 3 S21: -0.1997 S22: -0.1104 S23: 0.2029 REMARK 3 S31: -0.0546 S32: -0.4318 S33: 0.0421 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 57 A 171 REMARK 3 ORIGIN FOR THE GROUP (A): -3.7473 38.6674 1.2245 REMARK 3 T TENSOR REMARK 3 T11: 0.0484 T22: 0.0213 REMARK 3 T33: 0.1512 T12: 0.0177 REMARK 3 T13: -0.0047 T23: -0.0027 REMARK 3 L TENSOR REMARK 3 L11: 2.3501 L22: 0.9596 REMARK 3 L33: 4.7644 L12: -0.1272 REMARK 3 L13: -0.3656 L23: 0.2733 REMARK 3 S TENSOR REMARK 3 S11: -0.0604 S12: 0.0738 S13: -0.1841 REMARK 3 S21: 0.0773 S22: 0.0037 S23: -0.0516 REMARK 3 S31: 0.4591 S32: 0.2209 S33: 0.0567 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 172 A 195 REMARK 3 ORIGIN FOR THE GROUP (A): 2.6133 54.2872 -2.8602 REMARK 3 T TENSOR REMARK 3 T11: 0.4132 T22: 0.3738 REMARK 3 T33: 0.1787 T12: -0.2103 REMARK 3 T13: -0.0639 T23: 0.0605 REMARK 3 L TENSOR REMARK 3 L11: 5.3071 L22: 2.5612 REMARK 3 L33: 2.6708 L12: 0.7798 REMARK 3 L13: -0.2108 L23: 0.2764 REMARK 3 S TENSOR REMARK 3 S11: -0.1675 S12: 0.6361 S13: 0.5864 REMARK 3 S21: -0.3017 S22: 0.0085 S23: -0.0487 REMARK 3 S31: -0.8372 S32: 0.5520 S33: 0.1591 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 7 REMARK 3 ORIGIN FOR THE GROUP (A): -16.0643 47.8692 23.7537 REMARK 3 T TENSOR REMARK 3 T11: 0.2607 T22: 0.2973 REMARK 3 T33: 0.1419 T12: 0.0491 REMARK 3 T13: 0.0233 T23: -0.0062 REMARK 3 L TENSOR REMARK 3 L11: 10.4103 L22: 9.3370 REMARK 3 L33: 3.1968 L12: 4.4518 REMARK 3 L13: -2.2555 L23: -1.5838 REMARK 3 S TENSOR REMARK 3 S11: 0.1849 S12: -0.7681 S13: 0.3402 REMARK 3 S21: 0.9672 S22: -0.1892 S23: 0.1401 REMARK 3 S31: -0.3604 S32: -0.4034 S33: 0.0043 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 12 C 15 REMARK 3 ORIGIN FOR THE GROUP (A): -15.5528 42.0000 29.5635 REMARK 3 T TENSOR REMARK 3 T11: 0.3562 T22: 0.4046 REMARK 3 T33: 0.1983 T12: 0.0150 REMARK 3 T13: 0.0904 T23: 0.0916 REMARK 3 L TENSOR REMARK 3 L11: 7.9346 L22: 1.8060 REMARK 3 L33: 24.0691 L12: 3.5603 REMARK 3 L13: -4.8824 L23: -0.0968 REMARK 3 S TENSOR REMARK 3 S11: 0.3809 S12: -0.4312 S13: 0.0106 REMARK 3 S21: 0.3133 S22: -0.0874 S23: -0.0233 REMARK 3 S31: 1.0931 S32: 1.3954 S33: -0.2935 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 16 C 20 REMARK 3 ORIGIN FOR THE GROUP (A): -8.2673 48.6210 15.3894 REMARK 3 T TENSOR REMARK 3 T11: 0.1630 T22: 0.1639 REMARK 3 T33: 0.1557 T12: 0.0871 REMARK 3 T13: -0.0074 T23: -0.0172 REMARK 3 L TENSOR REMARK 3 L11: 7.8597 L22: 0.5219 REMARK 3 L33: 4.9870 L12: -0.8489 REMARK 3 L13: -0.7012 L23: 1.5206 REMARK 3 S TENSOR REMARK 3 S11: 0.0498 S12: -0.0671 S13: 0.5550 REMARK 3 S21: -0.1768 S22: 0.0976 S23: -0.1057 REMARK 3 S31: -0.6674 S32: 0.1406 S33: -0.1474 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 21 C 26 REMARK 3 ORIGIN FOR THE GROUP (A): 0.1761 52.8144 -3.0085 REMARK 3 T TENSOR REMARK 3 T11: 0.8464 T22: 0.2994 REMARK 3 T33: 0.2348 T12: -0.4375 REMARK 3 T13: 0.1988 T23: -0.0521 REMARK 3 L TENSOR REMARK 3 L11: 14.3076 L22: 0.3689 REMARK 3 L33: 2.5868 L12: 2.0913 REMARK 3 L13: 1.5219 L23: 0.6137 REMARK 3 S TENSOR REMARK 3 S11: 0.2654 S12: 0.8495 S13: 0.5049 REMARK 3 S21: -0.1796 S22: 0.2083 S23: -0.0022 REMARK 3 S31: -1.3353 S32: 0.8099 S33: -0.4737 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4LVI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-SEP-13. REMARK 100 THE DEPOSITION ID IS D_1000081137. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JUN-10 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97950 REMARK 200 MONOCHROMATOR : CHANNEL CUT ESRF MONOCHROMATOR REMARK 200 CRYSTAL TYPE SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25154 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 48.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 5.000 REMARK 200 R MERGE (I) : 0.10900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20-22% PEG 6000, 0.1M SODIUM ACETATE, REMARK 280 PH4.6, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 30.24667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 60.49333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 45.37000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 75.61667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 15.12333 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 30.24667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 60.49333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 75.61667 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 45.37000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 15.12333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12280 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PHE A 27 REMARK 465 GLU A 28 REMARK 465 THR A 29 REMARK 465 HIS A 30 REMARK 465 MET A 196 REMARK 465 ALA A 197 REMARK 465 ASP A 198 REMARK 465 MET A 199 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 86 -164.92 -165.43 REMARK 500 SER A 87 -159.88 -161.23 REMARK 500 GLU A 129 -160.11 -118.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 201 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 126 ND1 REMARK 620 2 GLU A 129 OE2 88.9 REMARK 620 3 HIS A 133 NE2 100.4 93.1 REMARK 620 4 HIS A 135 NE2 88.9 176.9 89.4 REMARK 620 5 DG C 26 O3' 170.8 87.2 88.1 94.7 REMARK 620 6 HOH C 120 O 95.2 78.7 162.2 99.4 75.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4LVJ RELATED DB: PDB REMARK 900 RELATED ID: 4LVK RELATED DB: PDB REMARK 900 RELATED ID: 4LVL RELATED DB: PDB REMARK 900 RELATED ID: 4LVM RELATED DB: PDB DBREF 4LVI A 2 199 UNP P13925 PRE_STRAG 2 199 DBREF 4LVI B 1 7 PDB 4LVI 4LVI 1 7 DBREF 4LVI C 12 26 PDB 4LVI 4LVI 12 26 SEQRES 1 A 198 SER TYR MET VAL ALA ARG MET GLN LYS MET LYS ALA GLY SEQRES 2 A 198 ASN LEU GLY GLY ALA PHE LYS HIS ASN GLU ARG VAL PHE SEQRES 3 A 198 GLU THR HIS SER ASN LYS ASP ILE ASN PRO SER ARG SER SEQRES 4 A 198 HIS LEU ASN TYR GLU LEU THR ASP ARG ASP ARG SER VAL SEQRES 5 A 198 SER TYR GLU LYS GLN ILE LYS ASP TYR VAL ASN GLU ASN SEQRES 6 A 198 LYS VAL SER ASN ARG ALA ILE ARG LYS ASP ALA VAL LEU SEQRES 7 A 198 CYS ASP GLU TRP ILE ILE THR SER ASP LYS ASP PHE PHE SEQRES 8 A 198 GLU LYS LEU ASP GLU GLU GLN THR ARG THR PHE PHE GLU SEQRES 9 A 198 THR ALA LYS ASN TYR PHE ALA GLU ASN TYR GLY GLU SER SEQRES 10 A 198 ASN ILE ALA TYR ALA SER VAL HIS LEU ASP GLU SER THR SEQRES 11 A 198 PRO HIS MET HIS MET GLY VAL VAL PRO PHE GLU ASN GLY SEQRES 12 A 198 LYS LEU SER SER LYS ALA MET PHE ASP ARG GLU GLU LEU SEQRES 13 A 198 LYS HIS ILE GLN GLU ASP LEU PRO ARG TYR MET SER ASP SEQRES 14 A 198 HIS GLY PHE GLU LEU GLU ARG GLY LYS LEU ASN SER GLU SEQRES 15 A 198 ALA LYS HIS LYS THR VAL ALA GLU PHE LYS ARG ALA MET SEQRES 16 A 198 ALA ASP MET SEQRES 1 B 7 DA DC DT DT DT DA DT SEQRES 1 C 15 DA DT DA DA DA DG DT DA DT DA DG DT DG SEQRES 2 C 15 DT DG HET MN A 201 1 HET GOL A 202 6 HETNAM MN MANGANESE (II) ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 4 MN MN 2+ FORMUL 5 GOL C3 H8 O3 FORMUL 6 HOH *134(H2 O) HELIX 1 1 LYS A 12 GLU A 24 1 13 HELIX 2 2 ASN A 36 ASN A 43 5 8 HELIX 3 3 SER A 54 LYS A 67 1 14 HELIX 4 4 ASP A 88 LYS A 94 1 7 HELIX 5 5 ASP A 96 GLY A 116 1 21 HELIX 6 6 SER A 147 PHE A 152 1 6 HELIX 7 7 ASP A 153 HIS A 171 1 19 HELIX 8 8 THR A 188 ALA A 195 1 8 SHEET 1 A 5 VAL A 5 MET A 11 0 SHEET 2 A 5 CYS A 80 THR A 86 -1 O CYS A 80 N MET A 11 SHEET 3 A 5 HIS A 133 VAL A 138 -1 O VAL A 138 N ASP A 81 SHEET 4 A 5 ILE A 120 HIS A 126 -1 N HIS A 126 O HIS A 133 SHEET 5 A 5 TYR A 44 GLU A 45 -1 N TYR A 44 O VAL A 125 SHEET 1 B 2 PHE A 141 GLU A 142 0 SHEET 2 B 2 LYS A 145 LEU A 146 -1 O LYS A 145 N GLU A 142 LINK ND1 HIS A 126 MN MN A 201 1555 1555 2.21 LINK OE2 GLU A 129 MN MN A 201 1555 1555 2.18 LINK NE2 HIS A 133 MN MN A 201 1555 1555 2.23 LINK NE2 HIS A 135 MN MN A 201 1555 1555 2.27 LINK MN MN A 201 O3' DG C 26 1555 1555 2.16 LINK MN MN A 201 O BHOH C 120 1555 1555 2.22 SITE 1 AC1 7 HIS A 22 HIS A 126 GLU A 129 HIS A 133 SITE 2 AC1 7 HIS A 135 DG C 26 HOH C 120 SITE 1 AC2 6 GLN A 58 TYR A 62 SER A 118 ILE A 120 SITE 2 AC2 6 ALA A 121 HOH A 393 CRYST1 111.060 111.060 90.740 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009004 0.005199 0.000000 0.00000 SCALE2 0.000000 0.010397 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011020 0.00000