HEADER DNA BINDING PROTEIN/DNA 26-JUL-13 4LVL TITLE MOBM RELAXASE DOMAIN (MOBV; MOB_PRE) BOUND TO PLASMID PMV158 ORIT DNA TITLE 2 (22NT+3'THIOPHOSPHATE). MN-BOUND CRYSTAL STRUCTURE AT PH 6.8 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PLASMID RECOMBINATION ENZYME; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RELAXASE DOMAIN OF MOBM PROTEIN, UNP RESIDUES 2-199; COMPND 5 SYNONYM: MOBILIZATION PROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: DNA (5'-D(*AP*CP*TP*TP*TP*AP*T)-3'); COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: OLIGONUCLEOTIDE_1 MIMICKING PMV158 ORIT DNA HAIRPIN; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: DNA (5'- COMPND 14 D(*AP*TP*AP*AP*AP*GP*TP*AP*TP*AP*GP*TP*GP*TP*GP*(TS6))-3'); COMPND 15 CHAIN: C; COMPND 16 FRAGMENT: OLIGONUCLEOTIDE_2 MIMICKING PMV158 ORIT DNA HAIRPIN; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS AGALACTIAE; SOURCE 3 ORGANISM_TAXID: 1311; SOURCE 4 GENE: PRE, MOB; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PQE-1; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 ORGANISM_SCIENTIFIC: SYNTHETIC DNA; SOURCE 13 ORGANISM_TAXID: 32630; SOURCE 14 OTHER_DETAILS: OLIGONUCLEOTIDES WERE OBTAINED FROM BIOMERS (ULM, SOURCE 15 GERMANY).; SOURCE 16 MOL_ID: 3; SOURCE 17 SYNTHETIC: YES; SOURCE 18 ORGANISM_SCIENTIFIC: SYNTHETIC DNA; SOURCE 19 ORGANISM_TAXID: 32630; SOURCE 20 OTHER_DETAILS: OLIGONUCLEOTIDES WERE OBTAINED FROM BIOMERS (ULM, SOURCE 21 GERMANY). KEYWDS PROTEIN-DNA COMPLEX, PFAM FAMILY: MOB_PRE (PF01076). MOB RELAXASE KEYWDS 2 FAMILY: MOBV, RELAXASE/ENDONUCLEASE, ORIT DNA, DNA BINDING PROTEIN- KEYWDS 3 DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR R.PLUTA,D.R.BOER,M.COLL REVDAT 4 28-FEB-24 4LVL 1 REMARK REVDAT 3 20-APR-22 4LVL 1 COMPND SOURCE REMARK DBREF REVDAT 3 2 1 LINK SITE ATOM REVDAT 2 18-OCT-17 4LVL 1 JRNL REVDAT 1 24-SEP-14 4LVL 0 JRNL AUTH R.PLUTA,D.R.BOER,F.LORENZO-DIAZ,S.RUSSI,H.GOMEZ, JRNL AUTH 2 C.FERNANDEZ-LOPEZ,R.PEREZ-LUQUE,M.OROZCO,M.ESPINOSA,M.COLL JRNL TITL STRUCTURAL BASIS OF A HISTIDINE-DNA NICKING/JOINING JRNL TITL 2 MECHANISM FOR GENE TRANSFER AND PROMISCUOUS SPREAD OF JRNL TITL 3 ANTIBIOTIC RESISTANCE. JRNL REF PROC. NATL. ACAD. SCI. V. 114 E6526 2017 JRNL REF 2 U.S.A. JRNL REFN ESSN 1091-6490 JRNL PMID 28739894 JRNL DOI 10.1073/PNAS.1702971114 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 16822 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 865 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1236 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2750 REMARK 3 BIN FREE R VALUE SET COUNT : 53 REMARK 3 BIN FREE R VALUE : 0.3680 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1608 REMARK 3 NUCLEIC ACID ATOMS : 453 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 157 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.08 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02000 REMARK 3 B22 (A**2) : 0.02000 REMARK 3 B33 (A**2) : -0.07000 REMARK 3 B12 (A**2) : 0.02000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.229 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.196 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.149 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 11.559 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2237 ; 0.012 ; 0.017 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3102 ; 1.488 ; 1.743 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 213 ; 5.573 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 99 ;34.251 ;24.545 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 324 ;15.429 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;25.398 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 301 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1594 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 822 ; 0.789 ; 1.544 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1039 ; 1.293 ; 2.312 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1414 ; 1.169 ; 1.606 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 9 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 26 REMARK 3 ORIGIN FOR THE GROUP (A): 10.7430 -46.0153 -1.6326 REMARK 3 T TENSOR REMARK 3 T11: 0.0227 T22: 0.0856 REMARK 3 T33: 0.1793 T12: -0.0077 REMARK 3 T13: -0.0600 T23: -0.0061 REMARK 3 L TENSOR REMARK 3 L11: 1.1458 L22: 2.8102 REMARK 3 L33: 5.0033 L12: 1.7527 REMARK 3 L13: 0.2337 L23: -0.2612 REMARK 3 S TENSOR REMARK 3 S11: -0.0682 S12: 0.1005 S13: 0.0396 REMARK 3 S21: -0.0557 S22: 0.0844 S23: -0.0336 REMARK 3 S31: -0.0140 S32: 0.5061 S33: -0.0162 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 27 A 31 REMARK 3 ORIGIN FOR THE GROUP (A): 19.8250 -48.5769 -14.4987 REMARK 3 T TENSOR REMARK 3 T11: 0.5001 T22: 0.5468 REMARK 3 T33: 0.6343 T12: -0.0040 REMARK 3 T13: 0.0974 T23: -0.0458 REMARK 3 L TENSOR REMARK 3 L11: 6.5741 L22: 20.8599 REMARK 3 L33: 16.5244 L12: 11.1481 REMARK 3 L13: -1.2167 L23: -7.6470 REMARK 3 S TENSOR REMARK 3 S11: 0.0147 S12: -0.0189 S13: 0.3163 REMARK 3 S21: 0.1764 S22: -0.0996 S23: 0.5069 REMARK 3 S31: -0.3603 S32: 0.6223 S33: 0.0849 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 32 A 50 REMARK 3 ORIGIN FOR THE GROUP (A): 10.8428 -40.2665 -14.3241 REMARK 3 T TENSOR REMARK 3 T11: 0.1712 T22: 0.1950 REMARK 3 T33: 0.1000 T12: 0.1015 REMARK 3 T13: 0.0793 T23: 0.0871 REMARK 3 L TENSOR REMARK 3 L11: 4.5240 L22: 0.3140 REMARK 3 L33: 9.1314 L12: -0.0996 REMARK 3 L13: -0.5967 L23: -0.6884 REMARK 3 S TENSOR REMARK 3 S11: 0.1653 S12: 0.6824 S13: 0.0071 REMARK 3 S21: -0.1496 S22: -0.1995 S23: -0.1416 REMARK 3 S31: -0.5023 S32: 0.2616 S33: 0.0342 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 51 A 89 REMARK 3 ORIGIN FOR THE GROUP (A): 14.4475 -37.5268 6.1115 REMARK 3 T TENSOR REMARK 3 T11: 0.0878 T22: 0.1093 REMARK 3 T33: 0.0777 T12: -0.0869 REMARK 3 T13: -0.0115 T23: -0.0088 REMARK 3 L TENSOR REMARK 3 L11: 3.5120 L22: 1.7570 REMARK 3 L33: 5.0245 L12: 0.8154 REMARK 3 L13: 1.8980 L23: 0.4972 REMARK 3 S TENSOR REMARK 3 S11: -0.1291 S12: 0.0228 S13: 0.0785 REMARK 3 S21: 0.0642 S22: 0.0761 S23: -0.1959 REMARK 3 S31: -0.6189 S32: 0.6652 S33: 0.0530 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 90 A 156 REMARK 3 ORIGIN FOR THE GROUP (A): 2.2642 -38.8200 -1.8004 REMARK 3 T TENSOR REMARK 3 T11: 0.0309 T22: 0.0194 REMARK 3 T33: 0.0643 T12: 0.0189 REMARK 3 T13: -0.0017 T23: -0.0034 REMARK 3 L TENSOR REMARK 3 L11: 1.9824 L22: 1.0798 REMARK 3 L33: 7.1377 L12: 0.2135 REMARK 3 L13: 0.8424 L23: 0.0103 REMARK 3 S TENSOR REMARK 3 S11: -0.0467 S12: 0.0335 S13: 0.1209 REMARK 3 S21: 0.0760 S22: -0.0122 S23: 0.1048 REMARK 3 S31: -0.4208 S32: -0.3373 S33: 0.0589 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 157 A 197 REMARK 3 ORIGIN FOR THE GROUP (A): -4.2096 -49.9414 -0.7790 REMARK 3 T TENSOR REMARK 3 T11: 0.0706 T22: 0.1791 REMARK 3 T33: 0.1147 T12: -0.0516 REMARK 3 T13: -0.0052 T23: -0.0063 REMARK 3 L TENSOR REMARK 3 L11: 4.0917 L22: 3.4656 REMARK 3 L33: 4.7097 L12: -2.2287 REMARK 3 L13: 0.0506 L23: 0.7966 REMARK 3 S TENSOR REMARK 3 S11: 0.1264 S12: 0.2934 S13: -0.5202 REMARK 3 S21: -0.2075 S22: -0.2187 S23: 0.4105 REMARK 3 S31: 0.4389 S32: -0.7204 S33: 0.0922 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 7 REMARK 3 ORIGIN FOR THE GROUP (A): 16.2756 -48.1219 23.7921 REMARK 3 T TENSOR REMARK 3 T11: 0.1399 T22: 0.1585 REMARK 3 T33: 0.0896 T12: -0.0059 REMARK 3 T13: -0.0274 T23: 0.0130 REMARK 3 L TENSOR REMARK 3 L11: 10.8809 L22: 9.3872 REMARK 3 L33: 4.2080 L12: 4.4884 REMARK 3 L13: -0.3667 L23: 1.1293 REMARK 3 S TENSOR REMARK 3 S11: 0.0260 S12: -0.4268 S13: -0.7069 REMARK 3 S21: 0.8259 S22: -0.2224 S23: -0.2249 REMARK 3 S31: 0.2613 S32: 0.2288 S33: 0.1964 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 12 C 18 REMARK 3 ORIGIN FOR THE GROUP (A): 13.8704 -44.5007 24.4133 REMARK 3 T TENSOR REMARK 3 T11: 0.1028 T22: 0.2141 REMARK 3 T33: 0.0861 T12: -0.0092 REMARK 3 T13: -0.0230 T23: 0.0063 REMARK 3 L TENSOR REMARK 3 L11: 5.7043 L22: 4.8374 REMARK 3 L33: 13.8020 L12: 0.9414 REMARK 3 L13: 6.4682 L23: 3.3291 REMARK 3 S TENSOR REMARK 3 S11: 0.0157 S12: -0.8118 S13: 0.0947 REMARK 3 S21: 0.4400 S22: 0.0596 S23: -0.1326 REMARK 3 S31: -0.2947 S32: -0.8580 S33: -0.0754 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 19 C 26 REMARK 3 ORIGIN FOR THE GROUP (A): 1.0943 -52.8250 0.4823 REMARK 3 T TENSOR REMARK 3 T11: 0.1858 T22: 0.0631 REMARK 3 T33: 0.2377 T12: -0.0813 REMARK 3 T13: -0.0558 T23: 0.0193 REMARK 3 L TENSOR REMARK 3 L11: 5.5798 L22: 1.1093 REMARK 3 L33: 5.9428 L12: -2.4287 REMARK 3 L13: -1.9581 L23: 0.4958 REMARK 3 S TENSOR REMARK 3 S11: -0.0183 S12: -0.1429 S13: -0.1296 REMARK 3 S21: -0.0347 S22: 0.0641 S23: -0.0175 REMARK 3 S31: 0.8820 S32: -0.1927 S33: -0.0458 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4LVL COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-SEP-13. REMARK 100 THE DEPOSITION ID IS D_1000081140. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-DEC-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.87260 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : IMOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16824 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 41.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 4.100 REMARK 200 R MERGE (I) : 0.15700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.75 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22% PEG 6000, 0.3M SODIUM CLORIDE, REMARK 280 0.1M SODIUM ACETATE, PH 4.6, VAPOR DIFFUSION, SEEDING, REMARK 280 TEMPERATURE 293K, PH 6.8 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 30.21667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 60.43333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 45.32500 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 75.54167 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 15.10833 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 30.21667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 60.43333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 75.54167 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 45.32500 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 15.10833 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12430 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -54.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 198 REMARK 465 MET A 199 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 408 O HOH A 409 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 48 31.02 -91.47 REMARK 500 SER A 87 -159.69 -159.68 REMARK 500 ALA A 123 86.82 -150.28 REMARK 500 GLU A 129 -157.26 -120.77 REMARK 500 SER A 147 103.44 -161.49 REMARK 500 PHE A 152 78.10 -112.31 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 201 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 126 ND1 REMARK 620 2 GLU A 129 OE2 95.0 REMARK 620 3 HIS A 133 NE2 111.4 84.3 REMARK 620 4 HIS A 135 NE2 88.2 176.8 94.6 REMARK 620 5 DG C 26 O3' 158.2 83.4 90.2 93.7 REMARK 620 6 TS6 C 27 O3P 91.6 88.0 156.3 91.8 66.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 204 DBREF 4LVL A 2 199 UNP P13925 PRE_STRAG 2 199 DBREF 4LVL B 1 7 PDB 4LVL 4LVL 1 7 DBREF 4LVL C 12 27 PDB 4LVL 4LVL 12 27 SEQRES 1 A 198 SER TYR MET VAL ALA ARG MET GLN LYS MET LYS ALA GLY SEQRES 2 A 198 ASN LEU GLY GLY ALA PHE LYS HIS ASN GLU ARG VAL PHE SEQRES 3 A 198 GLU THR HIS SER ASN LYS ASP ILE ASN PRO SER ARG SER SEQRES 4 A 198 HIS LEU ASN TYR GLU LEU THR ASP ARG ASP ARG SER VAL SEQRES 5 A 198 SER TYR GLU LYS GLN ILE LYS ASP TYR VAL ASN GLU ASN SEQRES 6 A 198 LYS VAL SER ASN ARG ALA ILE ARG LYS ASP ALA VAL LEU SEQRES 7 A 198 CYS ASP GLU TRP ILE ILE THR SER ASP LYS ASP PHE PHE SEQRES 8 A 198 GLU LYS LEU ASP GLU GLU GLN THR ARG THR PHE PHE GLU SEQRES 9 A 198 THR ALA LYS ASN TYR PHE ALA GLU ASN TYR GLY GLU SER SEQRES 10 A 198 ASN ILE ALA TYR ALA SER VAL HIS LEU ASP GLU SER THR SEQRES 11 A 198 PRO HIS MET HIS MET GLY VAL VAL PRO PHE GLU ASN GLY SEQRES 12 A 198 LYS LEU SER SER LYS ALA MET PHE ASP ARG GLU GLU LEU SEQRES 13 A 198 LYS HIS ILE GLN GLU ASP LEU PRO ARG TYR MET SER ASP SEQRES 14 A 198 HIS GLY PHE GLU LEU GLU ARG GLY LYS LEU ASN SER GLU SEQRES 15 A 198 ALA LYS HIS LYS THR VAL ALA GLU PHE LYS ARG ALA MET SEQRES 16 A 198 ALA ASP MET SEQRES 1 B 7 DA DC DT DT DT DA DT SEQRES 1 C 16 DA DT DA DA DA DG DT DA DT DA DG DT DG SEQRES 2 C 16 DT DG TS6 HET TS6 C 27 4 HET MN A 201 1 HET CL A 202 1 HET CL A 203 1 HET CL A 204 1 HETNAM TS6 MONOTHIOPHOSPHATE HETNAM MN MANGANESE (II) ION HETNAM CL CHLORIDE ION HETSYN TS6 PHOSPHOROTHIOIC O,O,S-ACID FORMUL 3 TS6 H3 O3 P S FORMUL 4 MN MN 2+ FORMUL 5 CL 3(CL 1-) FORMUL 8 HOH *157(H2 O) HELIX 1 1 LYS A 12 GLU A 24 1 13 HELIX 2 2 ASN A 36 ASN A 43 5 8 HELIX 3 3 SER A 54 GLU A 65 1 12 HELIX 4 4 ASP A 88 LYS A 94 1 7 HELIX 5 5 ASP A 96 GLY A 116 1 21 HELIX 6 6 SER A 147 PHE A 152 1 6 HELIX 7 7 ASP A 153 HIS A 171 1 19 HELIX 8 8 THR A 188 MET A 196 1 9 SHEET 1 A 5 VAL A 5 MET A 11 0 SHEET 2 A 5 CYS A 80 THR A 86 -1 O GLU A 82 N GLN A 9 SHEET 3 A 5 HIS A 133 VAL A 138 -1 O MET A 136 N TRP A 83 SHEET 4 A 5 ILE A 120 HIS A 126 -1 N HIS A 126 O HIS A 133 SHEET 5 A 5 TYR A 44 GLU A 45 -1 N TYR A 44 O VAL A 125 SHEET 1 B 2 PHE A 141 GLU A 142 0 SHEET 2 B 2 LYS A 145 LEU A 146 -1 O LYS A 145 N GLU A 142 LINK O3' DG C 26 P TS6 C 27 1555 1555 1.61 LINK ND1 HIS A 126 MN MN A 201 1555 1555 2.28 LINK OE2 GLU A 129 MN MN A 201 1555 1555 2.27 LINK NE2 HIS A 133 MN MN A 201 1555 1555 2.21 LINK NE2 HIS A 135 MN MN A 201 1555 1555 2.35 LINK MN MN A 201 O3' DG C 26 1555 1555 2.24 LINK MN MN A 201 O3P TS6 C 27 1555 1555 2.32 SITE 1 AC1 6 HIS A 126 GLU A 129 HIS A 133 HIS A 135 SITE 2 AC1 6 DG C 26 TS6 C 27 SITE 1 AC2 1 ALA A 190 SITE 1 AC3 1 ASP A 50 SITE 1 AC4 1 ASN A 70 CRYST1 112.420 112.420 90.650 90.00 90.00 120.00 P 61 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008895 0.005136 0.000000 0.00000 SCALE2 0.000000 0.010271 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011031 0.00000