data_4LVY # _entry.id 4LVY # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4LVY pdb_00004lvy 10.2210/pdb4lvy/pdb NDB NA2642 ? ? RCSB RCSB081153 ? ? WWPDB D_1000081153 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-03-19 2 'Structure model' 1 1 2024-02-28 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 4 2 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' 3 2 'Structure model' '_struct_site.pdbx_auth_asym_id' 4 2 'Structure model' '_struct_site.pdbx_auth_comp_id' 5 2 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4LVY _pdbx_database_status.recvd_initial_deposition_date 2013-07-26 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3SD3 . unspecified PDB 4LVV . unspecified PDB 4LVW . unspecified PDB 4LVY . unspecified PDB 4LVZ . unspecified PDB 4LW0 . unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Trausch, J.J.' 1 'Batey, R.T.' 2 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'A Disconnect between High-Affinity Binding and Efficient Regulation by Antifolates and Purines in the Tetrahydrofolate Riboswitch.' Chem.Biol. 21 205 216 2014 CBOLE2 UK 1074-5521 2050 ? 24388757 10.1016/j.chembiol.2013.11.012 1 'The structure of a tetrahydrofolate-sensing riboswitch reveals two ligand binding sites in a single aptamer.' Structure 19 1413 1423 2011 STRUE6 UK 0969-2126 2005 ? 21906956 10.1016/j.str.2011.06.019 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Trausch, J.J.' 1 ? primary 'Batey, R.T.' 2 ? 1 'Trausch, J.J.' 3 ? 1 'Ceres, P.' 4 ? 1 'Reyes, F.E.' 5 ? 1 'Batey, R.T.' 6 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'THF riboswitch' 28849.145 1 ? ? ? ? 2 non-polymer syn '2-{4-[2-(2-AMINO-4-OXO-4,7-DIHYDRO-3H-PYRROLO[2,3-D]PYRIMIDIN-5-YL)-ETHYL]-BENZOYLAMINO}-PENTANEDIOIC ACID' 427.411 2 ? ? ? ? 3 water nat water 18.015 139 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GGAGAGUAGAUGAUUCGCGUUAAGUGUGUGUGAAUGGGAUGUCGUCACACAACGAAGCGAGAGCGCGGUGAAUCAUUGCA UCCGCUCCA ; _entity_poly.pdbx_seq_one_letter_code_can ;GGAGAGUAGAUGAUUCGCGUUAAGUGUGUGUGAAUGGGAUGUCGUCACACAACGAAGCGAGAGCGCGGUGAAUCAUUGCA UCCGCUCCA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '2-{4-[2-(2-AMINO-4-OXO-4,7-DIHYDRO-3H-PYRROLO[2,3-D]PYRIMIDIN-5-YL)-ETHYL]-BENZOYLAMINO}-PENTANEDIOIC ACID' LYA 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 A n 1 4 G n 1 5 A n 1 6 G n 1 7 U n 1 8 A n 1 9 G n 1 10 A n 1 11 U n 1 12 G n 1 13 A n 1 14 U n 1 15 U n 1 16 C n 1 17 G n 1 18 C n 1 19 G n 1 20 U n 1 21 U n 1 22 A n 1 23 A n 1 24 G n 1 25 U n 1 26 G n 1 27 U n 1 28 G n 1 29 U n 1 30 G n 1 31 U n 1 32 G n 1 33 A n 1 34 A n 1 35 U n 1 36 G n 1 37 G n 1 38 G n 1 39 A n 1 40 U n 1 41 G n 1 42 U n 1 43 C n 1 44 G n 1 45 U n 1 46 C n 1 47 A n 1 48 C n 1 49 A n 1 50 C n 1 51 A n 1 52 A n 1 53 C n 1 54 G n 1 55 A n 1 56 A n 1 57 G n 1 58 C n 1 59 G n 1 60 A n 1 61 G n 1 62 A n 1 63 G n 1 64 C n 1 65 G n 1 66 C n 1 67 G n 1 68 G n 1 69 U n 1 70 G n 1 71 A n 1 72 A n 1 73 U n 1 74 C n 1 75 A n 1 76 U n 1 77 U n 1 78 G n 1 79 C n 1 80 A n 1 81 U n 1 82 C n 1 83 C n 1 84 G n 1 85 C n 1 86 U n 1 87 C n 1 88 C n 1 89 A n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'T7 in vitro transcribed' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 LYA non-polymer . '2-{4-[2-(2-AMINO-4-OXO-4,7-DIHYDRO-3H-PYRROLO[2,3-D]PYRIMIDIN-5-YL)-ETHYL]-BENZOYLAMINO}-PENTANEDIOIC ACID' LY231514 'C20 H21 N5 O6' 427.411 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 G 2 2 2 G G A . n A 1 3 A 3 3 3 A A A . n A 1 4 G 4 4 4 G G A . n A 1 5 A 5 5 5 A A A . n A 1 6 G 6 6 6 G G A . n A 1 7 U 7 7 7 U U A . n A 1 8 A 8 8 8 A A A . n A 1 9 G 9 9 9 G G A . n A 1 10 A 10 10 10 A A A . n A 1 11 U 11 11 11 U U A . n A 1 12 G 12 12 12 G G A . n A 1 13 A 13 13 13 A A A . n A 1 14 U 14 14 14 U U A . n A 1 15 U 15 15 15 U U A . n A 1 16 C 16 16 16 C C A . n A 1 17 G 17 17 17 G G A . n A 1 18 C 18 18 18 C C A . n A 1 19 G 19 19 19 G G A . n A 1 20 U 20 20 20 U U A . n A 1 21 U 21 21 21 U U A . n A 1 22 A 22 22 22 A A A . n A 1 23 A 23 23 23 A A A . n A 1 24 G 24 24 24 G G A . n A 1 25 U 25 25 25 U U A . n A 1 26 G 26 26 26 G G A . n A 1 27 U 27 27 27 U U A . n A 1 28 G 28 28 28 G G A . n A 1 29 U 29 29 29 U U A . n A 1 30 G 30 30 30 G G A . n A 1 31 U 31 31 31 U U A . n A 1 32 G 32 32 32 G G A . n A 1 33 A 33 33 33 A A A . n A 1 34 A 34 34 34 A A A . n A 1 35 U 35 35 35 U U A . n A 1 36 G 36 36 36 G G A . n A 1 37 G 37 37 37 G G A . n A 1 38 G 38 38 38 G G A . n A 1 39 A 39 39 39 A A A . n A 1 40 U 40 40 40 U U A . n A 1 41 G 41 41 41 G G A . n A 1 42 U 42 42 42 U U A . n A 1 43 C 43 43 43 C C A . n A 1 44 G 44 44 44 G G A . n A 1 45 U 45 45 45 U U A . n A 1 46 C 46 46 46 C C A . n A 1 47 A 47 47 47 A A A . n A 1 48 C 48 48 48 C C A . n A 1 49 A 49 49 49 A A A . n A 1 50 C 50 50 50 C C A . n A 1 51 A 51 51 51 A A A . n A 1 52 A 52 52 52 A A A . n A 1 53 C 53 53 53 C C A . n A 1 54 G 54 54 54 G G A . n A 1 55 A 55 55 55 A A A . n A 1 56 A 56 56 56 A A A . n A 1 57 G 57 57 57 G G A . n A 1 58 C 58 58 58 C C A . n A 1 59 G 59 59 59 G G A . n A 1 60 A 60 60 60 A A A . n A 1 61 G 61 61 61 G G A . n A 1 62 A 62 62 62 A A A . n A 1 63 G 63 63 63 G G A . n A 1 64 C 64 64 64 C C A . n A 1 65 G 65 65 65 G G A . n A 1 66 C 66 66 66 C C A . n A 1 67 G 67 67 67 G G A . n A 1 68 G 68 68 68 G G A . n A 1 69 U 69 69 69 U U A . n A 1 70 G 70 70 70 G G A . n A 1 71 A 71 71 71 A A A . n A 1 72 A 72 72 72 A A A . n A 1 73 U 73 73 73 U U A . n A 1 74 C 74 74 74 C C A . n A 1 75 A 75 75 75 A A A . n A 1 76 U 76 76 76 U U A . n A 1 77 U 77 77 77 U U A . n A 1 78 G 78 78 78 G G A . n A 1 79 C 79 79 79 C C A . n A 1 80 A 80 80 80 A A A . n A 1 81 U 81 81 81 U U A . n A 1 82 C 82 82 82 C C A . n A 1 83 C 83 83 83 C C A . n A 1 84 G 84 84 84 G G A . n A 1 85 C 85 85 85 C C A . n A 1 86 U 86 86 86 U U A . n A 1 87 C 87 87 87 C C A . n A 1 88 C 88 88 88 C C A . n A 1 89 A 89 89 89 A A A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 LYA 1 101 101 LYA LYA A . C 2 LYA 1 102 102 LYA LYA A . D 3 HOH 1 201 201 HOH HOH A . D 3 HOH 2 202 202 HOH HOH A . D 3 HOH 3 203 203 HOH HOH A . D 3 HOH 4 204 204 HOH HOH A . D 3 HOH 5 205 205 HOH HOH A . D 3 HOH 6 206 206 HOH HOH A . D 3 HOH 7 207 207 HOH HOH A . D 3 HOH 8 208 208 HOH HOH A . D 3 HOH 9 209 209 HOH HOH A . D 3 HOH 10 210 210 HOH HOH A . D 3 HOH 11 211 211 HOH HOH A . D 3 HOH 12 212 212 HOH HOH A . D 3 HOH 13 213 213 HOH HOH A . D 3 HOH 14 214 214 HOH HOH A . D 3 HOH 15 215 215 HOH HOH A . D 3 HOH 16 216 216 HOH HOH A . D 3 HOH 17 217 217 HOH HOH A . D 3 HOH 18 218 218 HOH HOH A . D 3 HOH 19 219 219 HOH HOH A . D 3 HOH 20 220 220 HOH HOH A . D 3 HOH 21 221 221 HOH HOH A . D 3 HOH 22 222 222 HOH HOH A . D 3 HOH 23 223 223 HOH HOH A . D 3 HOH 24 224 224 HOH HOH A . D 3 HOH 25 225 225 HOH HOH A . D 3 HOH 26 226 226 HOH HOH A . D 3 HOH 27 227 227 HOH HOH A . D 3 HOH 28 228 228 HOH HOH A . D 3 HOH 29 229 229 HOH HOH A . D 3 HOH 30 230 230 HOH HOH A . D 3 HOH 31 231 231 HOH HOH A . D 3 HOH 32 232 232 HOH HOH A . D 3 HOH 33 233 233 HOH HOH A . D 3 HOH 34 234 234 HOH HOH A . D 3 HOH 35 235 235 HOH HOH A . D 3 HOH 36 236 236 HOH HOH A . D 3 HOH 37 237 237 HOH HOH A . D 3 HOH 38 238 238 HOH HOH A . D 3 HOH 39 239 239 HOH HOH A . D 3 HOH 40 240 240 HOH HOH A . D 3 HOH 41 241 241 HOH HOH A . D 3 HOH 42 242 242 HOH HOH A . D 3 HOH 43 243 243 HOH HOH A . D 3 HOH 44 244 244 HOH HOH A . D 3 HOH 45 245 245 HOH HOH A . D 3 HOH 46 246 246 HOH HOH A . D 3 HOH 47 247 247 HOH HOH A . D 3 HOH 48 248 248 HOH HOH A . D 3 HOH 49 249 249 HOH HOH A . D 3 HOH 50 250 250 HOH HOH A . D 3 HOH 51 251 251 HOH HOH A . D 3 HOH 52 252 252 HOH HOH A . D 3 HOH 53 253 253 HOH HOH A . D 3 HOH 54 254 254 HOH HOH A . D 3 HOH 55 255 255 HOH HOH A . D 3 HOH 56 256 256 HOH HOH A . D 3 HOH 57 257 257 HOH HOH A . D 3 HOH 58 258 258 HOH HOH A . D 3 HOH 59 259 259 HOH HOH A . D 3 HOH 60 260 260 HOH HOH A . D 3 HOH 61 261 261 HOH HOH A . D 3 HOH 62 262 262 HOH HOH A . D 3 HOH 63 263 263 HOH HOH A . D 3 HOH 64 264 264 HOH HOH A . D 3 HOH 65 265 265 HOH HOH A . D 3 HOH 66 266 266 HOH HOH A . D 3 HOH 67 267 267 HOH HOH A . D 3 HOH 68 268 268 HOH HOH A . D 3 HOH 69 269 269 HOH HOH A . D 3 HOH 70 270 270 HOH HOH A . D 3 HOH 71 271 271 HOH HOH A . D 3 HOH 72 272 272 HOH HOH A . D 3 HOH 73 273 273 HOH HOH A . D 3 HOH 74 274 274 HOH HOH A . D 3 HOH 75 275 275 HOH HOH A . D 3 HOH 76 276 276 HOH HOH A . D 3 HOH 77 277 277 HOH HOH A . D 3 HOH 78 278 278 HOH HOH A . D 3 HOH 79 279 279 HOH HOH A . D 3 HOH 80 280 280 HOH HOH A . D 3 HOH 81 281 281 HOH HOH A . D 3 HOH 82 282 282 HOH HOH A . D 3 HOH 83 283 283 HOH HOH A . D 3 HOH 84 284 284 HOH HOH A . D 3 HOH 85 285 285 HOH HOH A . D 3 HOH 86 286 286 HOH HOH A . D 3 HOH 87 287 287 HOH HOH A . D 3 HOH 88 288 288 HOH HOH A . D 3 HOH 89 289 289 HOH HOH A . D 3 HOH 90 290 290 HOH HOH A . D 3 HOH 91 291 291 HOH HOH A . D 3 HOH 92 292 292 HOH HOH A . D 3 HOH 93 293 293 HOH HOH A . D 3 HOH 94 294 294 HOH HOH A . D 3 HOH 95 295 295 HOH HOH A . D 3 HOH 96 296 296 HOH HOH A . D 3 HOH 97 297 297 HOH HOH A . D 3 HOH 98 298 298 HOH HOH A . D 3 HOH 99 299 299 HOH HOH A . D 3 HOH 100 300 300 HOH HOH A . D 3 HOH 101 301 301 HOH HOH A . D 3 HOH 102 302 302 HOH HOH A . D 3 HOH 103 303 303 HOH HOH A . D 3 HOH 104 304 304 HOH HOH A . D 3 HOH 105 305 305 HOH HOH A . D 3 HOH 106 306 306 HOH HOH A . D 3 HOH 107 307 307 HOH HOH A . D 3 HOH 108 308 308 HOH HOH A . D 3 HOH 109 309 309 HOH HOH A . D 3 HOH 110 310 310 HOH HOH A . D 3 HOH 111 311 311 HOH HOH A . D 3 HOH 112 312 312 HOH HOH A . D 3 HOH 113 313 313 HOH HOH A . D 3 HOH 114 314 314 HOH HOH A . D 3 HOH 115 315 315 HOH HOH A . D 3 HOH 116 316 316 HOH HOH A . D 3 HOH 117 317 317 HOH HOH A . D 3 HOH 118 318 318 HOH HOH A . D 3 HOH 119 319 319 HOH HOH A . D 3 HOH 120 320 320 HOH HOH A . D 3 HOH 121 321 321 HOH HOH A . D 3 HOH 122 322 322 HOH HOH A . D 3 HOH 123 323 323 HOH HOH A . D 3 HOH 124 324 324 HOH HOH A . D 3 HOH 125 325 325 HOH HOH A . D 3 HOH 126 326 326 HOH HOH A . D 3 HOH 127 327 327 HOH HOH A . D 3 HOH 128 328 328 HOH HOH A . D 3 HOH 129 329 329 HOH HOH A . D 3 HOH 130 330 330 HOH HOH A . D 3 HOH 131 331 331 HOH HOH A . D 3 HOH 132 332 332 HOH HOH A . D 3 HOH 133 333 333 HOH HOH A . D 3 HOH 134 334 334 HOH HOH A . D 3 HOH 135 335 335 HOH HOH A . D 3 HOH 136 336 336 HOH HOH A . D 3 HOH 137 337 337 HOH HOH A . D 3 HOH 138 338 338 HOH HOH A . D 3 HOH 139 339 339 HOH HOH A . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 N 1 A LYA 101 ? C23 ? B LYA 1 C23 2 1 N 1 A LYA 101 ? C24 ? B LYA 1 C24 3 1 N 1 A LYA 101 ? C25 ? B LYA 1 C25 4 1 N 1 A LYA 101 ? C26 ? B LYA 1 C26 5 1 N 1 A LYA 101 ? O27 ? B LYA 1 O27 6 1 N 1 A LYA 101 ? O28 ? B LYA 1 O28 7 1 N 1 A LYA 101 ? C29 ? B LYA 1 C29 8 1 N 1 A LYA 101 ? O30 ? B LYA 1 O30 9 1 N 1 A LYA 101 ? O31 ? B LYA 1 O31 10 1 N 1 A LYA 102 ? C23 ? C LYA 1 C23 11 1 N 1 A LYA 102 ? C24 ? C LYA 1 C24 12 1 N 1 A LYA 102 ? C25 ? C LYA 1 C25 13 1 N 1 A LYA 102 ? C26 ? C LYA 1 C26 14 1 N 1 A LYA 102 ? O27 ? C LYA 1 O27 15 1 N 1 A LYA 102 ? O28 ? C LYA 1 O28 16 1 N 1 A LYA 102 ? C29 ? C LYA 1 C29 17 1 N 1 A LYA 102 ? O30 ? C LYA 1 O30 18 1 N 1 A LYA 102 ? O31 ? C LYA 1 O31 # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal BOS 'data collection' . ? 1 PHASER phasing . ? 2 PHENIX refinement '(phenix.refine: 1.8_1069)' ? 3 MOSFLM 'data reduction' . ? 4 SCALA 'data scaling' . ? 5 # _cell.entry_id 4LVY _cell.length_a 27.370 _cell.length_b 68.440 _cell.length_c 155.830 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4LVY _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # _exptl.entry_id 4LVY _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.53 _exptl_crystal.density_percent_sol 51.37 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 303 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;2,4-methyl-pentanediol, spermine, sodium cacodylate, sodium chloride, dithiothreitol, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 303K ; # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2013-01-19 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.1051 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 5.0.2' _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 5.0.2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.1051 # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4LVY _reflns.observed_criterion_sigma_I 4.4 _reflns.observed_criterion_sigma_F 4.4 _reflns.d_resolution_low 51.94 _reflns.d_resolution_high 2.00 _reflns.number_obs ? _reflns.number_all 20704 _reflns.percent_possible_obs 99.7 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3.7 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 2.00 _reflns_shell.d_res_low 2.11 _reflns_shell.percent_possible_all 99.9 _reflns_shell.Rmerge_I_obs 0.263 _reflns_shell.pdbx_Rsym_value 0.154 _reflns_shell.meanI_over_sigI_obs 4.4 _reflns_shell.pdbx_redundancy 3.8 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4LVY _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 20628 _refine.ls_number_reflns_all 20704 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 34.220 _refine.ls_d_res_high 2.000 _refine.ls_percent_reflns_obs 99.54 _refine.ls_R_factor_obs 0.2120 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2104 _refine.ls_R_factor_R_free 0.2422 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.00 _refine.ls_number_reflns_R_free 1032 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.28 _refine.pdbx_overall_phase_error 29.58 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1913 _refine_hist.pdbx_number_atoms_ligand 44 _refine_hist.number_atoms_solvent 139 _refine_hist.number_atoms_total 2096 _refine_hist.d_res_high 2.000 _refine_hist.d_res_low 34.220 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.004 ? ? 2190 'X-RAY DIFFRACTION' ? f_angle_d 0.953 ? ? 3408 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 13.653 ? ? 1083 'X-RAY DIFFRACTION' ? f_chiral_restr 0.042 ? ? 445 'X-RAY DIFFRACTION' ? f_plane_restr 0.007 ? ? 95 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.number_reflns_obs 'X-RAY DIFFRACTION' . 2.0000 2.1055 2768 0.2953 100.00 0.3610 . . 146 . . . . 'X-RAY DIFFRACTION' . 2.1055 2.2373 2719 0.2961 100.00 0.3070 . . 142 . . . . 'X-RAY DIFFRACTION' . 2.2373 2.4101 2748 0.2811 100.00 0.3445 . . 145 . . . . 'X-RAY DIFFRACTION' . 2.4101 2.6525 2781 0.2799 100.00 0.3091 . . 148 . . . . 'X-RAY DIFFRACTION' . 2.6525 3.0361 2820 0.2672 100.00 0.2823 . . 148 . . . . 'X-RAY DIFFRACTION' . 3.0361 3.8244 2809 0.1851 99.00 0.2212 . . 147 . . . . 'X-RAY DIFFRACTION' . 3.8244 34.2250 2951 0.1600 98.00 0.1888 . . 156 . . . . # _database_PDB_matrix.entry_id 4LVY _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 4LVY _struct.title 'Structure of the THF riboswitch bound to pemetrexed' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4LVY _struct_keywords.pdbx_keywords RNA _struct_keywords.text ;Aptamers, Nucleotide, Bacillus subtilis, Bacterial Proteins, Base Sequence, Binding Sites, Calorimetry, Folic Acid, Gene Expression Regulation, Bacterial, Guanine, Leucovorin, Ligands, Magnesium, Molecular Sequence Data, Nucleic Acid Conformation, Point Mutation, Protein Binding, Protein Structure, Secondary, RNA, Riboswitch, S-Adenosylmethionine, Streptococcus mutans, Terminator Regions, Genetic, Tetrahydrofolates, Thermodynamics, Transcription, three-way junction, pseudoknot, regulation, ncRNA, Pemetrexed Binding, mRNA ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 4LVY _struct_ref.pdbx_db_accession 4LVY _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ;GGAGAGUAGAUGAUUCGCGUUAAGUGUGUGUGAAUGGGAUGUCGUCACACAACGAAGCGAGAGCGCGGUGAAUCAUUGCA UCCGCUCCA ; _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4LVY _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 89 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 4LVY _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 89 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 89 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 88 N3 ? ? A G 1 A C 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 88 O2 ? ? A G 1 A C 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 88 N4 ? ? A G 1 A C 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 87 N3 ? ? A G 2 A C 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 87 O2 ? ? A G 2 A C 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 87 N4 ? ? A G 2 A C 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A A 3 N1 ? ? ? 1_555 A U 86 N3 ? ? A A 3 A U 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A A 3 N6 ? ? ? 1_555 A U 86 O4 ? ? A A 3 A U 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 4 N1 ? ? ? 1_555 A C 85 N3 ? ? A G 4 A C 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 4 N2 ? ? ? 1_555 A C 85 O2 ? ? A G 4 A C 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A G 4 O6 ? ? ? 1_555 A C 85 N4 ? ? A G 4 A C 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A A 5 N1 ? ? ? 1_555 A G 84 N1 ? ? A A 5 A G 84 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog13 hydrog ? ? A A 5 N6 ? ? ? 1_555 A G 84 O6 ? ? A A 5 A G 84 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog14 hydrog ? ? A G 6 N2 ? ? ? 1_555 A G 37 O6 ? ? A G 6 A G 37 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog15 hydrog ? ? A A 8 N3 ? ? ? 1_555 A G 44 N2 ? ? A A 8 A G 44 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog16 hydrog ? ? A A 8 N7 ? ? ? 1_555 A G 78 N2 ? ? A A 8 A G 78 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog17 hydrog ? ? A G 9 N1 ? ? ? 1_555 A U 77 O2 ? ? A G 9 A U 77 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog18 hydrog ? ? A G 9 O6 ? ? ? 1_555 A U 77 N3 ? ? A G 9 A U 77 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog19 hydrog ? ? A A 10 N1 ? ? ? 1_555 A U 76 N3 ? ? A A 10 A U 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A A 10 N6 ? ? ? 1_555 A U 76 O4 ? ? A A 10 A U 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A U 11 N3 ? ? ? 1_555 A A 75 N1 ? ? A U 11 A A 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A U 11 O4 ? ? ? 1_555 A A 75 N6 ? ? A U 11 A A 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A G 12 N1 ? ? ? 1_555 A C 74 N3 ? ? A G 12 A C 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A G 12 N2 ? ? ? 1_555 A C 74 O2 ? ? A G 12 A C 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A G 12 O6 ? ? ? 1_555 A C 74 N4 ? ? A G 12 A C 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A A 13 N1 ? ? ? 1_555 A U 73 N3 ? ? A A 13 A U 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A A 13 N6 ? ? ? 1_555 A U 73 O4 ? ? A A 13 A U 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A U 14 N3 ? ? ? 1_555 A A 72 N1 ? ? A U 14 A A 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A U 14 O4 ? ? ? 1_555 A A 72 N6 ? ? A U 14 A A 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A U 15 N3 ? ? ? 1_555 A A 71 N1 ? ? A U 15 A A 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A U 15 O4 ? ? ? 1_555 A A 71 N6 ? ? A U 15 A A 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A C 16 N3 ? ? ? 1_555 A G 70 N1 ? ? A C 16 A G 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A C 16 N4 ? ? ? 1_555 A G 70 O6 ? ? A C 16 A G 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A C 16 O2 ? ? ? 1_555 A G 70 N2 ? ? A C 16 A G 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A G 17 N1 ? ? ? 1_555 A U 69 O2 ? ? A G 17 A U 69 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog36 hydrog ? ? A G 17 O6 ? ? ? 1_555 A U 69 N3 ? ? A G 17 A U 69 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog37 hydrog ? ? A C 18 N3 ? ? ? 1_555 A G 67 N1 ? ? A C 18 A G 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A C 18 N4 ? ? ? 1_555 A G 67 O6 ? ? A C 18 A G 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A C 18 O2 ? ? ? 1_555 A G 67 N2 ? ? A C 18 A G 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A G 19 N2 ? ? ? 1_555 A A 22 N1 ? ? A G 19 A A 22 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog41 hydrog ? ? A G 19 N1 ? ? ? 1_555 A C 66 N3 ? ? A G 19 A C 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A G 19 N2 ? ? ? 1_555 A C 66 O2 ? ? A G 19 A C 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A G 19 O6 ? ? ? 1_555 A C 66 N4 ? ? A G 19 A C 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A U 20 N3 ? ? ? 1_555 A G 65 O6 ? ? A U 20 A G 65 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog45 hydrog ? ? A U 20 O2 ? ? ? 1_555 A G 65 N1 ? ? A U 20 A G 65 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog46 hydrog ? ? A A 23 N6 ? ? ? 1_555 A A 55 N1 ? ? A A 23 A A 55 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog47 hydrog ? ? A A 23 N7 ? ? ? 1_555 A A 55 N6 ? ? A A 23 A A 55 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog48 hydrog ? ? A A 23 N1 ? ? ? 1_555 A G 67 N2 ? ? A A 23 A G 67 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog49 hydrog ? ? A G 24 O6 ? ? ? 1_555 A G 54 N1 ? ? A G 24 A G 54 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog50 hydrog ? ? A G 26 N1 ? ? ? 1_555 A A 52 N1 ? ? A G 26 A A 52 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog51 hydrog ? ? A G 26 O6 ? ? ? 1_555 A A 52 N6 ? ? A G 26 A A 52 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog52 hydrog ? ? A G 26 N2 ? ? ? 1_555 A C 53 O2 ? ? A G 26 A C 53 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog53 hydrog ? ? A U 27 N3 ? ? ? 1_555 A A 51 N1 ? ? A U 27 A A 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A U 27 O4 ? ? ? 1_555 A A 51 N6 ? ? A U 27 A A 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A G 28 N1 ? ? ? 1_555 A C 50 N3 ? ? A G 28 A C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A G 28 N2 ? ? ? 1_555 A C 50 O2 ? ? A G 28 A C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A G 28 O6 ? ? ? 1_555 A C 50 N4 ? ? A G 28 A C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A U 29 N3 ? ? ? 1_555 A A 49 N1 ? ? A U 29 A A 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A U 29 O4 ? ? ? 1_555 A A 49 N6 ? ? A U 29 A A 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A G 30 N1 ? ? ? 1_555 A C 48 N3 ? ? A G 30 A C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A G 30 N2 ? ? ? 1_555 A C 48 O2 ? ? A G 30 A C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A G 30 O6 ? ? ? 1_555 A C 48 N4 ? ? A G 30 A C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A U 31 N3 ? ? ? 1_555 A A 47 N1 ? ? A U 31 A A 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A U 31 O4 ? ? ? 1_555 A A 47 N6 ? ? A U 31 A A 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A G 32 N1 ? ? ? 1_555 A C 46 N3 ? ? A G 32 A C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A G 32 N2 ? ? ? 1_555 A C 46 O2 ? ? A G 32 A C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A G 32 O6 ? ? ? 1_555 A C 46 N4 ? ? A G 32 A C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A A 33 N1 ? ? ? 1_555 A U 45 N3 ? ? A A 33 A U 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A A 33 N6 ? ? ? 1_555 A U 45 O4 ? ? A A 33 A U 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? A A 34 N1 ? ? ? 1_555 A G 44 N1 ? ? A A 34 A G 44 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog71 hydrog ? ? A A 34 N6 ? ? ? 1_555 A G 44 O6 ? ? A A 34 A G 44 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog72 hydrog ? ? A U 35 N3 ? ? ? 1_555 A U 42 O4 ? ? A U 35 A U 42 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog73 hydrog ? ? A G 37 N1 ? ? ? 1_555 A C 83 N3 ? ? A G 37 A C 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? A G 37 N2 ? ? ? 1_555 A C 83 O2 ? ? A G 37 A C 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? A G 37 O6 ? ? ? 1_555 A C 83 N4 ? ? A G 37 A C 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? A G 38 N1 ? ? ? 1_555 A C 82 N3 ? ? A G 38 A C 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? A G 38 N2 ? ? ? 1_555 A C 82 O2 ? ? A G 38 A C 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? A G 38 O6 ? ? ? 1_555 A C 82 N4 ? ? A G 38 A C 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? A A 39 N1 ? ? ? 1_555 A U 81 N3 ? ? A A 39 A U 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? A A 39 N6 ? ? ? 1_555 A U 81 O4 ? ? A A 39 A U 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? A U 40 N3 ? ? ? 1_555 A A 80 N1 ? ? A U 40 A A 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? A U 40 O4 ? ? ? 1_555 A A 80 N6 ? ? A U 40 A A 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? A G 41 N1 ? ? ? 1_555 A C 79 N3 ? ? A G 41 A C 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? A G 41 N2 ? ? ? 1_555 A C 79 O2 ? ? A G 41 A C 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? A G 41 O6 ? ? ? 1_555 A C 79 N4 ? ? A G 41 A C 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? A A 56 N3 ? ? ? 1_555 A G 65 N2 ? ? A A 56 A G 65 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog87 hydrog ? ? A G 57 N1 ? ? ? 1_555 A C 64 N3 ? ? A G 57 A C 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? A G 57 N2 ? ? ? 1_555 A C 64 O2 ? ? A G 57 A C 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog89 hydrog ? ? A G 57 O6 ? ? ? 1_555 A C 64 N4 ? ? A G 57 A C 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog90 hydrog ? ? A C 58 N3 ? ? ? 1_555 A G 63 N1 ? ? A C 58 A G 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog91 hydrog ? ? A C 58 N4 ? ? ? 1_555 A G 63 O6 ? ? A C 58 A G 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog92 hydrog ? ? A C 58 O2 ? ? ? 1_555 A G 63 N2 ? ? A C 58 A G 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog93 hydrog ? ? A G 59 N2 ? ? ? 1_555 A A 62 N7 ? ? A G 59 A A 62 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A LYA 101 ? 7 'BINDING SITE FOR RESIDUE LYA A 101' AC2 Software A LYA 102 ? 8 'BINDING SITE FOR RESIDUE LYA A 102' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 C A 18 ? C A 18 . ? 1_655 ? 2 AC1 7 U A 25 ? U A 25 . ? 1_555 ? 3 AC1 7 G A 26 ? G A 26 . ? 1_555 ? 4 AC1 7 C A 53 ? C A 53 . ? 1_555 ? 5 AC1 7 G A 54 ? G A 54 . ? 1_555 ? 6 AC1 7 G A 68 ? G A 68 . ? 1_555 ? 7 AC1 7 HOH D . ? HOH A 300 . ? 1_555 ? 8 AC2 8 U A 7 ? U A 7 . ? 1_555 ? 9 AC2 8 A A 8 ? A A 8 . ? 1_555 ? 10 AC2 8 U A 35 ? U A 35 . ? 1_555 ? 11 AC2 8 U A 42 ? U A 42 . ? 1_555 ? 12 AC2 8 C A 43 ? C A 43 . ? 1_555 ? 13 AC2 8 G A 44 ? G A 44 . ? 1_555 ? 14 AC2 8 G A 78 ? G A 78 . ? 1_555 ? 15 AC2 8 C A 79 ? C A 79 . ? 1_555 ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O6 A G 24 ? ? N2 A G 54 ? ? 2.05 2 1 O A HOH 201 ? ? O A HOH 310 ? ? 2.09 3 1 "O4'" A A 62 ? ? O A HOH 309 ? ? 2.16 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 "O4'" _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 C _pdbx_validate_rmsd_angle.auth_seq_id_1 79 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 "C1'" _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 C _pdbx_validate_rmsd_angle.auth_seq_id_2 79 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 N1 _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 C _pdbx_validate_rmsd_angle.auth_seq_id_3 79 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 113.42 _pdbx_validate_rmsd_angle.angle_target_value 108.50 _pdbx_validate_rmsd_angle.angle_deviation 4.92 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.70 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 HOH O O N N 111 HOH H1 H N N 112 HOH H2 H N N 113 LYA C1 C Y N 114 LYA C2 C Y N 115 LYA C3 C Y N 116 LYA C4 C Y N 117 LYA C5 C Y N 118 LYA C6 C Y N 119 LYA C7 C N N 120 LYA C8 C N N 121 LYA C9 C Y N 122 LYA C10 C Y N 123 LYA N11 N Y N 124 LYA C12 C Y N 125 LYA C13 C Y N 126 LYA C14 C Y N 127 LYA O15 O N N 128 LYA N16 N Y N 129 LYA C17 C Y N 130 LYA N18 N Y N 131 LYA N19 N N N 132 LYA C20 C N N 133 LYA O21 O N N 134 LYA N22 N N N 135 LYA C23 C N S 136 LYA C24 C N N 137 LYA C25 C N N 138 LYA C26 C N N 139 LYA O27 O N N 140 LYA O28 O N N 141 LYA C29 C N N 142 LYA O30 O N N 143 LYA O31 O N N 144 LYA HC2 H N N 145 LYA HC3 H N N 146 LYA HC5 H N N 147 LYA HC6 H N N 148 LYA HC71 H N N 149 LYA HC72 H N N 150 LYA HC81 H N N 151 LYA HC82 H N N 152 LYA H10 H N N 153 LYA H11 H N N 154 LYA H18 H N N 155 LYA H191 H N N 156 LYA H192 H N N 157 LYA H22 H N N 158 LYA H23 H N N 159 LYA H241 H N N 160 LYA H242 H N N 161 LYA H251 H N N 162 LYA H252 H N N 163 LYA H28 H N N 164 LYA H31 H N N 165 U OP3 O N N 166 U P P N N 167 U OP1 O N N 168 U OP2 O N N 169 U "O5'" O N N 170 U "C5'" C N N 171 U "C4'" C N R 172 U "O4'" O N N 173 U "C3'" C N S 174 U "O3'" O N N 175 U "C2'" C N R 176 U "O2'" O N N 177 U "C1'" C N R 178 U N1 N N N 179 U C2 C N N 180 U O2 O N N 181 U N3 N N N 182 U C4 C N N 183 U O4 O N N 184 U C5 C N N 185 U C6 C N N 186 U HOP3 H N N 187 U HOP2 H N N 188 U "H5'" H N N 189 U "H5''" H N N 190 U "H4'" H N N 191 U "H3'" H N N 192 U "HO3'" H N N 193 U "H2'" H N N 194 U "HO2'" H N N 195 U "H1'" H N N 196 U H3 H N N 197 U H5 H N N 198 U H6 H N N 199 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 HOH O H1 sing N N 116 HOH O H2 sing N N 117 LYA C1 C2 doub Y N 118 LYA C1 C6 sing Y N 119 LYA C1 C7 sing N N 120 LYA C2 C3 sing Y N 121 LYA C2 HC2 sing N N 122 LYA C3 C4 doub Y N 123 LYA C3 HC3 sing N N 124 LYA C4 C5 sing Y N 125 LYA C4 C20 sing N N 126 LYA C5 C6 doub Y N 127 LYA C5 HC5 sing N N 128 LYA C6 HC6 sing N N 129 LYA C7 C8 sing N N 130 LYA C7 HC71 sing N N 131 LYA C7 HC72 sing N N 132 LYA C8 C9 sing N N 133 LYA C8 HC81 sing N N 134 LYA C8 HC82 sing N N 135 LYA C9 C10 doub Y N 136 LYA C9 C13 sing Y N 137 LYA C10 N11 sing Y N 138 LYA C10 H10 sing N N 139 LYA N11 C12 sing Y N 140 LYA N11 H11 sing N N 141 LYA C12 C13 doub Y N 142 LYA C12 N18 sing Y N 143 LYA C13 C14 sing Y N 144 LYA C14 O15 doub N N 145 LYA C14 N16 sing Y N 146 LYA N16 C17 doub Y N 147 LYA C17 N18 sing Y N 148 LYA C17 N19 sing N N 149 LYA N18 H18 sing N N 150 LYA N19 H191 sing N N 151 LYA N19 H192 sing N N 152 LYA C20 O21 doub N N 153 LYA C20 N22 sing N N 154 LYA N22 C23 sing N N 155 LYA N22 H22 sing N N 156 LYA C23 C24 sing N N 157 LYA C23 C29 sing N N 158 LYA C23 H23 sing N N 159 LYA C24 C25 sing N N 160 LYA C24 H241 sing N N 161 LYA C24 H242 sing N N 162 LYA C25 C26 sing N N 163 LYA C25 H251 sing N N 164 LYA C25 H252 sing N N 165 LYA C26 O27 doub N N 166 LYA C26 O28 sing N N 167 LYA O28 H28 sing N N 168 LYA C29 O30 doub N N 169 LYA C29 O31 sing N N 170 LYA O31 H31 sing N N 171 U OP3 P sing N N 172 U OP3 HOP3 sing N N 173 U P OP1 doub N N 174 U P OP2 sing N N 175 U P "O5'" sing N N 176 U OP2 HOP2 sing N N 177 U "O5'" "C5'" sing N N 178 U "C5'" "C4'" sing N N 179 U "C5'" "H5'" sing N N 180 U "C5'" "H5''" sing N N 181 U "C4'" "O4'" sing N N 182 U "C4'" "C3'" sing N N 183 U "C4'" "H4'" sing N N 184 U "O4'" "C1'" sing N N 185 U "C3'" "O3'" sing N N 186 U "C3'" "C2'" sing N N 187 U "C3'" "H3'" sing N N 188 U "O3'" "HO3'" sing N N 189 U "C2'" "O2'" sing N N 190 U "C2'" "C1'" sing N N 191 U "C2'" "H2'" sing N N 192 U "O2'" "HO2'" sing N N 193 U "C1'" N1 sing N N 194 U "C1'" "H1'" sing N N 195 U N1 C2 sing N N 196 U N1 C6 sing N N 197 U C2 O2 doub N N 198 U C2 N3 sing N N 199 U N3 C4 sing N N 200 U N3 H3 sing N N 201 U C4 O4 doub N N 202 U C4 C5 sing N N 203 U C5 C6 doub N N 204 U C5 H5 sing N N 205 U C6 H6 sing N N 206 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4LVY 'double helix' 4LVY 'a-form double helix' 4LVY 'bulge loop' 4LVY 'mismatched base pair' 4LVY 'triple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 88 1_555 -0.487 -0.352 -0.108 -1.366 -3.749 -3.053 1 A_G1:C88_A A 1 ? A 88 ? 19 1 1 A G 2 1_555 A C 87 1_555 -0.218 -0.110 -0.277 -11.471 -14.659 6.211 2 A_G2:C87_A A 2 ? A 87 ? 19 1 1 A A 3 1_555 A U 86 1_555 0.034 -0.512 0.014 -5.757 -11.711 0.049 3 A_A3:U86_A A 3 ? A 86 ? 20 1 1 A G 4 1_555 A C 85 1_555 0.008 -0.021 0.123 -13.055 -20.148 -0.624 4 A_G4:C85_A A 4 ? A 85 ? 19 1 1 A A 5 1_555 A G 84 1_555 0.253 1.545 -0.244 -21.370 -8.885 -18.405 5 A_A5:G84_A A 5 ? A 84 ? 8 1 1 A G 37 1_555 A C 83 1_555 -0.338 -0.163 -0.372 -8.583 -8.833 1.867 6 A_G37:C83_A A 37 ? A 83 ? 19 1 1 A G 38 1_555 A C 82 1_555 -0.280 -0.242 -0.355 -14.501 -8.718 -0.249 7 A_G38:C82_A A 38 ? A 82 ? 19 1 1 A A 39 1_555 A U 81 1_555 0.096 -0.045 -0.057 -5.238 -5.428 0.075 8 A_A39:U81_A A 39 ? A 81 ? 20 1 1 A U 40 1_555 A A 80 1_555 0.335 -0.141 0.058 -10.262 -18.790 5.734 9 A_U40:A80_A A 40 ? A 80 ? 20 1 1 A G 41 1_555 A C 79 1_555 -0.171 0.030 -0.615 -40.349 -9.727 0.502 10 A_G41:C79_A A 41 ? A 79 ? 19 1 1 A U 42 1_555 A U 35 1_555 -3.917 -0.491 -0.808 12.013 -15.549 -97.478 11 A_U42:U35_A A 42 ? A 35 ? ? 4 1 A G 44 1_555 A A 34 1_555 -0.155 1.499 -0.247 2.516 -16.871 -18.188 12 A_G44:A34_A A 44 ? A 34 ? 8 1 1 A U 45 1_555 A A 33 1_555 0.106 -0.078 0.057 7.776 -13.808 -2.218 13 A_U45:A33_A A 45 ? A 33 ? 20 1 1 A C 46 1_555 A G 32 1_555 0.242 -0.192 0.146 4.245 -12.755 2.091 14 A_C46:G32_A A 46 ? A 32 ? 19 1 1 A A 47 1_555 A U 31 1_555 0.092 -0.126 0.162 8.527 -10.261 0.609 15 A_A47:U31_A A 47 ? A 31 ? 20 1 1 A C 48 1_555 A G 30 1_555 0.053 -0.215 0.135 11.952 -12.875 -0.267 16 A_C48:G30_A A 48 ? A 30 ? 19 1 1 A A 49 1_555 A U 29 1_555 0.025 -0.176 -0.153 3.239 -17.373 0.950 17 A_A49:U29_A A 49 ? A 29 ? 20 1 1 A C 50 1_555 A G 28 1_555 0.330 -0.371 -0.085 5.225 -19.113 2.229 18 A_C50:G28_A A 50 ? A 28 ? 19 1 1 A A 51 1_555 A U 27 1_555 0.283 -0.104 -0.154 -6.064 -10.334 -1.166 19 A_A51:U27_A A 51 ? A 27 ? 20 1 1 A A 52 1_555 A G 26 1_555 0.163 1.400 -0.581 -7.732 -13.065 -8.698 20 A_A52:G26_A A 52 ? A 26 ? 8 1 1 A A 8 1_555 A G 78 1_555 -7.219 -4.985 0.172 -12.679 3.290 -19.175 21 A_A8:G78_A A 8 ? A 78 ? ? 10 1 A G 9 1_555 A U 77 1_555 -2.366 -0.637 -0.173 1.287 -4.085 -1.602 22 A_G9:U77_A A 9 ? A 77 ? 28 1 1 A A 10 1_555 A U 76 1_555 -0.196 -0.101 -0.152 -4.456 -11.501 3.823 23 A_A10:U76_A A 10 ? A 76 ? 20 1 1 A U 11 1_555 A A 75 1_555 -0.185 -0.238 -0.050 0.647 -13.691 -0.327 24 A_U11:A75_A A 11 ? A 75 ? 20 1 1 A G 12 1_555 A C 74 1_555 -0.086 -0.548 -0.058 -7.240 -10.940 -3.096 25 A_G12:C74_A A 12 ? A 74 ? 19 1 1 A A 13 1_555 A U 73 1_555 0.086 -0.226 0.101 -3.685 -15.606 -3.185 26 A_A13:U73_A A 13 ? A 73 ? 20 1 1 A U 14 1_555 A A 72 1_555 -0.288 -0.092 0.086 -11.696 -15.677 -2.520 27 A_U14:A72_A A 14 ? A 72 ? 20 1 1 A U 15 1_555 A A 71 1_555 -0.303 0.009 0.313 -3.244 -11.866 4.862 28 A_U15:A71_A A 15 ? A 71 ? 20 1 1 A C 16 1_555 A G 70 1_555 0.523 -0.220 0.174 6.116 -9.924 -3.003 29 A_C16:G70_A A 16 ? A 70 ? 19 1 1 A G 17 1_555 A U 69 1_555 -2.350 -0.566 0.087 1.171 -11.400 1.876 30 A_G17:U69_A A 17 ? A 69 ? 28 1 1 A C 18 1_555 A G 67 1_555 0.048 -0.152 0.090 2.715 -10.469 0.225 31 A_C18:G67_A A 18 ? A 67 ? 19 1 1 A G 19 1_555 A C 66 1_555 -0.080 -0.248 -0.060 -7.757 -25.838 1.138 32 A_G19:C66_A A 19 ? A 66 ? 19 1 1 A U 20 1_555 A G 65 1_555 2.024 -0.480 0.191 -5.469 -13.097 -11.498 33 A_U20:G65_A A 20 ? A 65 ? 28 1 1 A G 57 1_555 A C 64 1_555 -0.256 -0.075 -0.162 -13.127 -7.168 -0.971 34 A_G57:C64_A A 57 ? A 64 ? 19 1 1 A C 58 1_555 A G 63 1_555 0.289 -0.161 0.075 4.673 -3.882 -1.728 35 A_C58:G63_A A 58 ? A 63 ? 19 1 1 A G 59 1_555 A A 62 1_555 7.981 -4.939 0.343 11.001 -4.311 -53.161 36 A_G59:A62_A A 59 ? A 62 ? ? ? 1 A A 23 1_555 A A 55 1_555 -4.072 1.274 -0.131 -19.546 -2.658 -110.146 37 A_A23:A55_A A 23 ? A 55 ? 5 4 1 A G 24 1_555 A G 54 1_555 -5.100 0.167 0.287 15.450 -12.258 -45.117 38 A_G24:G54_A A 24 ? A 54 ? ? ? # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 88 1_555 A G 2 1_555 A C 87 1_555 0.125 -1.931 3.485 1.216 6.544 36.257 -3.958 -0.029 3.104 10.407 -1.934 36.843 1 AA_G1G2:C87C88_AA A 1 ? A 88 ? A 2 ? A 87 ? 1 A G 2 1_555 A C 87 1_555 A A 3 1_555 A U 86 1_555 -0.116 -1.428 3.110 -0.587 4.012 30.779 -3.380 0.113 2.907 7.519 1.100 31.039 2 AA_G2A3:U86C87_AA A 2 ? A 87 ? A 3 ? A 86 ? 1 A A 3 1_555 A U 86 1_555 A G 4 1_555 A C 85 1_555 0.441 -1.833 3.347 3.530 7.799 34.083 -4.171 -0.218 2.900 13.052 -5.908 35.111 3 AA_A3G4:C85U86_AA A 3 ? A 86 ? A 4 ? A 85 ? 1 A G 4 1_555 A C 85 1_555 A A 5 1_555 A G 84 1_555 -1.088 -1.629 3.311 5.264 5.022 35.535 -3.291 2.454 2.876 8.123 -8.515 36.249 4 AA_G4A5:G84C85_AA A 4 ? A 85 ? A 5 ? A 84 ? 1 A A 5 1_555 A G 84 1_555 A G 37 1_555 A C 83 1_555 -1.879 -3.385 3.378 13.123 3.898 47.966 -4.286 3.121 2.548 4.685 -15.772 49.770 5 AA_A5G37:C83G84_AA A 5 ? A 84 ? A 37 ? A 83 ? 1 A G 37 1_555 A C 83 1_555 A G 38 1_555 A C 82 1_555 -0.929 -1.762 3.352 -4.080 8.451 36.551 -3.802 0.918 2.970 13.209 6.377 37.697 6 AA_G37G38:C82C83_AA A 37 ? A 83 ? A 38 ? A 82 ? 1 A G 38 1_555 A C 82 1_555 A A 39 1_555 A U 81 1_555 -0.644 -1.901 2.943 -2.210 8.661 25.251 -5.936 0.924 2.226 19.065 4.865 26.762 7 AA_G38A39:U81C82_AA A 38 ? A 82 ? A 39 ? A 81 ? 1 A A 39 1_555 A U 81 1_555 A U 40 1_555 A A 80 1_555 1.209 -1.592 3.372 3.813 15.274 33.927 -4.418 -1.409 2.563 24.599 -6.140 37.304 8 AA_A39U40:A80U81_AA A 39 ? A 81 ? A 40 ? A 80 ? 1 A U 40 1_555 A A 80 1_555 A G 41 1_555 A C 79 1_555 1.407 -0.813 3.816 16.443 15.922 41.507 -2.599 -0.124 3.587 20.687 -21.364 47.155 9 AA_U40G41:C79A80_AA A 40 ? A 80 ? A 41 ? A 79 ? 1 A G 41 1_555 A C 79 1_555 A U 42 1_555 A U 35 1_555 -2.865 1.593 2.744 -17.241 8.462 46.057 1.251 2.096 3.751 10.304 20.996 49.699 10 AA_G41U42:U35C79_AA A 41 ? A 79 ? A 42 ? A 35 ? 1 A U 42 1_555 A U 35 1_555 A G 44 1_555 A A 34 1_555 1.903 -2.470 3.313 -3.923 -2.262 59.984 -2.352 -2.093 3.277 -2.259 3.918 60.139 11 AA_U42G44:A34U35_AA A 42 ? A 35 ? A 44 ? A 34 ? 1 A G 44 1_555 A A 34 1_555 A U 45 1_555 A A 33 1_555 0.987 -1.695 3.058 -3.987 0.736 34.759 -2.920 -2.190 2.895 1.226 6.646 34.987 12 AA_G44U45:A33A34_AA A 44 ? A 34 ? A 45 ? A 33 ? 1 A U 45 1_555 A A 33 1_555 A C 46 1_555 A G 32 1_555 0.639 -1.685 3.323 0.186 2.166 36.144 -3.016 -1.001 3.223 3.488 -0.299 36.208 13 AA_U45C46:G32A33_AA A 45 ? A 33 ? A 46 ? A 32 ? 1 A C 46 1_555 A G 32 1_555 A A 47 1_555 A U 31 1_555 -0.882 -1.586 3.055 -1.166 6.145 29.522 -4.163 1.483 2.709 11.892 2.257 30.163 14 AA_C46A47:U31G32_AA A 46 ? A 32 ? A 47 ? A 31 ? 1 A A 47 1_555 A U 31 1_555 A C 48 1_555 A G 30 1_555 0.185 -1.316 3.197 0.072 6.139 31.637 -3.401 -0.321 2.898 11.128 -0.130 32.212 15 AA_A47C48:G30U31_AA A 47 ? A 31 ? A 48 ? A 30 ? 1 A C 48 1_555 A G 30 1_555 A A 49 1_555 A U 29 1_555 -0.598 -1.496 3.405 1.712 11.846 32.306 -4.305 1.267 2.674 20.435 -2.953 34.397 16 AA_C48A49:U29G30_AA A 48 ? A 30 ? A 49 ? A 29 ? 1 A A 49 1_555 A U 29 1_555 A C 50 1_555 A G 28 1_555 0.300 -1.123 3.187 -0.289 11.062 32.548 -3.498 -0.550 2.672 19.062 0.499 34.329 17 AA_A49C50:G28U29_AA A 49 ? A 29 ? A 50 ? A 28 ? 1 A C 50 1_555 A G 28 1_555 A A 51 1_555 A U 27 1_555 0.014 -1.901 3.567 0.587 11.371 33.155 -4.871 0.065 2.784 19.234 -0.994 35.004 18 AA_C50A51:U27G28_AA A 50 ? A 28 ? A 51 ? A 27 ? 1 A A 51 1_555 A U 27 1_555 A A 52 1_555 A G 26 1_555 -0.567 -1.929 3.337 5.383 5.017 32.088 -4.231 1.886 2.880 8.931 -9.581 32.899 19 AA_A51A52:G26U27_AA A 51 ? A 27 ? A 52 ? A 26 ? 1 A A 8 1_555 A G 78 1_555 A G 9 1_555 A U 77 1_555 2.188 -1.501 2.938 1.574 4.712 45.538 -2.291 -2.690 2.848 6.066 -2.026 45.794 20 AA_A8G9:U77G78_AA A 8 ? A 78 ? A 9 ? A 77 ? 1 A G 9 1_555 A U 77 1_555 A A 10 1_555 A U 76 1_555 -0.558 -1.844 3.401 -3.670 5.634 38.145 -3.479 0.388 3.146 8.539 5.563 38.711 21 AA_G9A10:U76U77_AA A 9 ? A 77 ? A 10 ? A 76 ? 1 A A 10 1_555 A U 76 1_555 A U 11 1_555 A A 75 1_555 -0.345 -1.395 3.124 0.209 6.170 31.703 -3.511 0.655 2.808 11.162 -0.377 32.284 22 AA_A10U11:A75U76_AA A 10 ? A 76 ? A 11 ? A 75 ? 1 A U 11 1_555 A A 75 1_555 A G 12 1_555 A C 74 1_555 0.138 -1.308 3.341 0.225 13.847 33.239 -3.994 -0.193 2.609 23.004 -0.374 35.933 23 AA_U11G12:C74A75_AA A 11 ? A 75 ? A 12 ? A 74 ? 1 A G 12 1_555 A C 74 1_555 A A 13 1_555 A U 73 1_555 -0.398 -1.311 3.132 -2.606 5.938 34.785 -2.972 0.298 2.898 9.826 4.312 35.366 24 AA_G12A13:U73C74_AA A 12 ? A 74 ? A 13 ? A 73 ? 1 A A 13 1_555 A U 73 1_555 A U 14 1_555 A A 72 1_555 -0.117 -1.465 3.494 0.520 11.904 29.275 -4.874 0.310 2.705 22.417 -0.979 31.557 25 AA_A13U14:A72U73_AA A 13 ? A 73 ? A 14 ? A 72 ? 1 A U 14 1_555 A A 72 1_555 A U 15 1_555 A A 71 1_555 0.787 -1.101 2.938 1.230 3.692 33.587 -2.420 -1.178 2.831 6.362 -2.120 33.805 26 AA_U14U15:A71A72_AA A 14 ? A 72 ? A 15 ? A 71 ? 1 A U 15 1_555 A A 71 1_555 A C 16 1_555 A G 70 1_555 -0.387 -1.065 3.057 0.927 4.896 34.317 -2.473 0.778 2.871 8.243 -1.561 34.667 27 AA_U15C16:G70A71_AA A 15 ? A 71 ? A 16 ? A 70 ? 1 A C 16 1_555 A G 70 1_555 A G 17 1_555 A U 69 1_555 1.891 -2.282 3.174 1.732 7.297 20.089 -8.726 -4.471 2.359 20.040 -4.756 21.430 28 AA_C16G17:U69G70_AA A 16 ? A 70 ? A 17 ? A 69 ? 1 A G 17 1_555 A U 69 1_555 A C 18 1_555 A G 67 1_555 -0.214 -1.483 3.221 -2.991 0.401 46.406 -1.912 0.023 3.216 0.508 3.792 46.498 29 AA_G17C18:G67U69_AA A 17 ? A 69 ? A 18 ? A 67 ? 1 A C 18 1_555 A G 67 1_555 A G 19 1_555 A C 66 1_555 -0.079 -1.529 3.402 -1.148 18.523 33.636 -4.496 -0.014 2.286 29.397 1.821 38.286 30 AA_C18G19:C66G67_AA A 18 ? A 67 ? A 19 ? A 66 ? 1 A G 19 1_555 A C 66 1_555 A U 20 1_555 A G 65 1_555 -0.297 -1.043 3.008 -0.016 5.581 45.308 -1.785 0.382 2.867 7.212 0.021 45.633 31 AA_G19U20:G65C66_AA A 19 ? A 66 ? A 20 ? A 65 ? 1 A U 20 1_555 A G 65 1_555 A G 57 1_555 A C 64 1_555 -1.936 -2.299 3.295 3.313 6.434 32.368 -5.017 3.902 2.598 11.366 -5.853 33.146 32 AA_U20G57:C64G65_AA A 20 ? A 65 ? A 57 ? A 64 ? 1 A G 57 1_555 A C 64 1_555 A C 58 1_555 A G 63 1_555 1.023 -2.320 2.918 0.763 -2.307 26.120 -4.535 -2.063 3.136 -5.091 -1.684 26.231 33 AA_G57C58:G63C64_AA A 57 ? A 64 ? A 58 ? A 63 ? 1 A C 58 1_555 A G 63 1_555 A G 59 1_555 A A 62 1_555 -4.724 -2.007 3.141 -0.791 2.477 54.982 -2.313 5.067 3.118 2.681 0.856 55.039 34 AA_C58G59:A62G63_AA A 58 ? A 63 ? A 59 ? A 62 ? 1 A A 23 1_555 A A 55 1_555 A G 24 1_555 A G 54 1_555 3.448 -1.592 2.756 -10.144 1.759 28.291 -3.302 -7.997 1.365 3.458 19.938 30.070 35 AA_A23G24:G54A55_AA A 23 ? A 55 ? A 24 ? A 54 ? # _atom_sites.entry_id 4LVY _atom_sites.fract_transf_matrix[1][1] 0.036536 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014611 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006417 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_