data_4LVZ # _entry.id 4LVZ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4LVZ pdb_00004lvz 10.2210/pdb4lvz/pdb NDB NA2643 ? ? RCSB RCSB081154 ? ? WWPDB D_1000081154 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-03-19 2 'Structure model' 1 1 2024-02-28 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 4 2 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' 3 2 'Structure model' '_struct_site.pdbx_auth_asym_id' 4 2 'Structure model' '_struct_site.pdbx_auth_comp_id' 5 2 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4LVZ _pdbx_database_status.recvd_initial_deposition_date 2013-07-26 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3SD3 . unspecified PDB 4LVV . unspecified PDB 4LVW . unspecified PDB 4LVY . unspecified PDB 4LVX . unspecified PDB 4LW0 . unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Trausch, J.J.' 1 'Batey, R.T.' 2 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'A Disconnect between High-Affinity Binding and Efficient Regulation by Antifolates and Purines in the Tetrahydrofolate Riboswitch.' Chem.Biol. 21 205 216 2014 CBOLE2 UK 1074-5521 2050 ? 24388757 10.1016/j.chembiol.2013.11.012 1 'The structure of a tetrahydrofolate-sensing riboswitch reveals two ligand binding sites in a single aptamer.' Structure 19 1413 1423 2011 STRUE6 UK 0969-2126 2005 ? 21906956 10.1016/j.str.2011.06.019 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Trausch, J.J.' 1 ? primary 'Batey, R.T.' 2 ? 1 'Trausch, J.J.' 3 ? 1 'Ceres, P.' 4 ? 1 'Reyes, F.E.' 5 ? 1 'Batey, R.T.' 6 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'THF riboswitch' 28849.145 1 ? ? ? ? 2 non-polymer syn 9H-PURINE-2,6-DIAMINE 150.141 1 ? ? ? ? 3 water nat water 18.015 307 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GGAGAGUAGAUGAUUCGCGUUAAGUGUGUGUGAAUGGGAUGUCGUCACACAACGAAGCGAGAGCGCGGUGAAUCAUUGCA UCCGCUCCA ; _entity_poly.pdbx_seq_one_letter_code_can ;GGAGAGUAGAUGAUUCGCGUUAAGUGUGUGUGAAUGGGAUGUCGUCACACAACGAAGCGAGAGCGCGGUGAAUCAUUGCA UCCGCUCCA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 9H-PURINE-2,6-DIAMINE 6AP 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 A n 1 4 G n 1 5 A n 1 6 G n 1 7 U n 1 8 A n 1 9 G n 1 10 A n 1 11 U n 1 12 G n 1 13 A n 1 14 U n 1 15 U n 1 16 C n 1 17 G n 1 18 C n 1 19 G n 1 20 U n 1 21 U n 1 22 A n 1 23 A n 1 24 G n 1 25 U n 1 26 G n 1 27 U n 1 28 G n 1 29 U n 1 30 G n 1 31 U n 1 32 G n 1 33 A n 1 34 A n 1 35 U n 1 36 G n 1 37 G n 1 38 G n 1 39 A n 1 40 U n 1 41 G n 1 42 U n 1 43 C n 1 44 G n 1 45 U n 1 46 C n 1 47 A n 1 48 C n 1 49 A n 1 50 C n 1 51 A n 1 52 A n 1 53 C n 1 54 G n 1 55 A n 1 56 A n 1 57 G n 1 58 C n 1 59 G n 1 60 A n 1 61 G n 1 62 A n 1 63 G n 1 64 C n 1 65 G n 1 66 C n 1 67 G n 1 68 G n 1 69 U n 1 70 G n 1 71 A n 1 72 A n 1 73 U n 1 74 C n 1 75 A n 1 76 U n 1 77 U n 1 78 G n 1 79 C n 1 80 A n 1 81 U n 1 82 C n 1 83 C n 1 84 G n 1 85 C n 1 86 U n 1 87 C n 1 88 C n 1 89 A n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'T7 in vitro transcribed' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 6AP non-polymer . 9H-PURINE-2,6-DIAMINE 2,6-DIAMINOPURINE 'C5 H6 N6' 150.141 A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 G 2 2 2 G G A . n A 1 3 A 3 3 3 A A A . n A 1 4 G 4 4 4 G G A . n A 1 5 A 5 5 5 A A A . n A 1 6 G 6 6 6 G G A . n A 1 7 U 7 7 7 U U A . n A 1 8 A 8 8 8 A A A . n A 1 9 G 9 9 9 G G A . n A 1 10 A 10 10 10 A A A . n A 1 11 U 11 11 11 U U A . n A 1 12 G 12 12 12 G G A . n A 1 13 A 13 13 13 A A A . n A 1 14 U 14 14 14 U U A . n A 1 15 U 15 15 15 U U A . n A 1 16 C 16 16 16 C C A . n A 1 17 G 17 17 17 G G A . n A 1 18 C 18 18 18 C C A . n A 1 19 G 19 19 19 G G A . n A 1 20 U 20 20 20 U U A . n A 1 21 U 21 21 21 U U A . n A 1 22 A 22 22 22 A A A . n A 1 23 A 23 23 23 A A A . n A 1 24 G 24 24 24 G G A . n A 1 25 U 25 25 25 U U A . n A 1 26 G 26 26 26 G G A . n A 1 27 U 27 27 27 U U A . n A 1 28 G 28 28 28 G G A . n A 1 29 U 29 29 29 U U A . n A 1 30 G 30 30 30 G G A . n A 1 31 U 31 31 31 U U A . n A 1 32 G 32 32 32 G G A . n A 1 33 A 33 33 33 A A A . n A 1 34 A 34 34 34 A A A . n A 1 35 U 35 35 35 U U A . n A 1 36 G 36 36 36 G G A . n A 1 37 G 37 37 37 G G A . n A 1 38 G 38 38 38 G G A . n A 1 39 A 39 39 39 A A A . n A 1 40 U 40 40 40 U U A . n A 1 41 G 41 41 41 G G A . n A 1 42 U 42 42 42 U U A . n A 1 43 C 43 43 43 C C A . n A 1 44 G 44 44 44 G G A . n A 1 45 U 45 45 45 U U A . n A 1 46 C 46 46 46 C C A . n A 1 47 A 47 47 47 A A A . n A 1 48 C 48 48 48 C C A . n A 1 49 A 49 49 49 A A A . n A 1 50 C 50 50 50 C C A . n A 1 51 A 51 51 51 A A A . n A 1 52 A 52 52 52 A A A . n A 1 53 C 53 53 53 C C A . n A 1 54 G 54 54 54 G G A . n A 1 55 A 55 55 55 A A A . n A 1 56 A 56 56 56 A A A . n A 1 57 G 57 57 57 G G A . n A 1 58 C 58 58 58 C C A . n A 1 59 G 59 59 59 G G A . n A 1 60 A 60 60 60 A A A . n A 1 61 G 61 61 61 G G A . n A 1 62 A 62 62 62 A A A . n A 1 63 G 63 63 63 G G A . n A 1 64 C 64 64 64 C C A . n A 1 65 G 65 65 65 G G A . n A 1 66 C 66 66 66 C C A . n A 1 67 G 67 67 67 G G A . n A 1 68 G 68 68 68 G G A . n A 1 69 U 69 69 69 U U A . n A 1 70 G 70 70 70 G G A . n A 1 71 A 71 71 71 A A A . n A 1 72 A 72 72 72 A A A . n A 1 73 U 73 73 73 U U A . n A 1 74 C 74 74 74 C C A . n A 1 75 A 75 75 75 A A A . n A 1 76 U 76 76 76 U U A . n A 1 77 U 77 77 77 U U A . n A 1 78 G 78 78 78 G G A . n A 1 79 C 79 79 79 C C A . n A 1 80 A 80 80 80 A A A . n A 1 81 U 81 81 81 U U A . n A 1 82 C 82 82 82 C C A . n A 1 83 C 83 83 83 C C A . n A 1 84 G 84 84 84 G G A . n A 1 85 C 85 85 85 C C A . n A 1 86 U 86 86 86 U U A . n A 1 87 C 87 87 87 C C A . n A 1 88 C 88 88 88 C C A . n A 1 89 A 89 89 89 A A A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 6AP 1 101 1 6AP 6AP A . C 3 HOH 1 201 1 HOH HOH A . C 3 HOH 2 202 2 HOH HOH A . C 3 HOH 3 203 3 HOH HOH A . C 3 HOH 4 204 4 HOH HOH A . C 3 HOH 5 205 5 HOH HOH A . C 3 HOH 6 206 6 HOH HOH A . C 3 HOH 7 207 7 HOH HOH A . C 3 HOH 8 208 8 HOH HOH A . C 3 HOH 9 209 9 HOH HOH A . C 3 HOH 10 210 10 HOH HOH A . C 3 HOH 11 211 11 HOH HOH A . C 3 HOH 12 212 12 HOH HOH A . C 3 HOH 13 213 13 HOH HOH A . C 3 HOH 14 214 14 HOH HOH A . C 3 HOH 15 215 15 HOH HOH A . C 3 HOH 16 216 16 HOH HOH A . C 3 HOH 17 217 17 HOH HOH A . C 3 HOH 18 218 18 HOH HOH A . C 3 HOH 19 219 19 HOH HOH A . C 3 HOH 20 220 20 HOH HOH A . C 3 HOH 21 221 21 HOH HOH A . C 3 HOH 22 222 22 HOH HOH A . C 3 HOH 23 223 23 HOH HOH A . C 3 HOH 24 224 24 HOH HOH A . C 3 HOH 25 225 25 HOH HOH A . C 3 HOH 26 226 26 HOH HOH A . C 3 HOH 27 227 27 HOH HOH A . C 3 HOH 28 228 28 HOH HOH A . C 3 HOH 29 229 29 HOH HOH A . C 3 HOH 30 230 30 HOH HOH A . C 3 HOH 31 231 31 HOH HOH A . C 3 HOH 32 232 32 HOH HOH A . C 3 HOH 33 233 33 HOH HOH A . C 3 HOH 34 234 34 HOH HOH A . C 3 HOH 35 235 35 HOH HOH A . C 3 HOH 36 236 36 HOH HOH A . C 3 HOH 37 237 37 HOH HOH A . C 3 HOH 38 238 38 HOH HOH A . C 3 HOH 39 239 39 HOH HOH A . C 3 HOH 40 240 40 HOH HOH A . C 3 HOH 41 241 41 HOH HOH A . C 3 HOH 42 242 42 HOH HOH A . C 3 HOH 43 243 43 HOH HOH A . C 3 HOH 44 244 44 HOH HOH A . C 3 HOH 45 245 45 HOH HOH A . C 3 HOH 46 246 46 HOH HOH A . C 3 HOH 47 247 47 HOH HOH A . C 3 HOH 48 248 48 HOH HOH A . C 3 HOH 49 249 49 HOH HOH A . C 3 HOH 50 250 50 HOH HOH A . C 3 HOH 51 251 51 HOH HOH A . C 3 HOH 52 252 52 HOH HOH A . C 3 HOH 53 253 53 HOH HOH A . C 3 HOH 54 254 54 HOH HOH A . C 3 HOH 55 255 55 HOH HOH A . C 3 HOH 56 256 56 HOH HOH A . C 3 HOH 57 257 57 HOH HOH A . C 3 HOH 58 258 58 HOH HOH A . C 3 HOH 59 259 59 HOH HOH A . C 3 HOH 60 260 60 HOH HOH A . C 3 HOH 61 261 61 HOH HOH A . C 3 HOH 62 262 62 HOH HOH A . C 3 HOH 63 263 63 HOH HOH A . C 3 HOH 64 264 64 HOH HOH A . C 3 HOH 65 265 65 HOH HOH A . C 3 HOH 66 266 66 HOH HOH A . C 3 HOH 67 267 67 HOH HOH A . C 3 HOH 68 268 68 HOH HOH A . C 3 HOH 69 269 69 HOH HOH A . C 3 HOH 70 270 70 HOH HOH A . C 3 HOH 71 271 71 HOH HOH A . C 3 HOH 72 272 72 HOH HOH A . C 3 HOH 73 273 73 HOH HOH A . C 3 HOH 74 274 74 HOH HOH A . C 3 HOH 75 275 75 HOH HOH A . C 3 HOH 76 276 76 HOH HOH A . C 3 HOH 77 277 77 HOH HOH A . C 3 HOH 78 278 78 HOH HOH A . C 3 HOH 79 279 79 HOH HOH A . C 3 HOH 80 280 80 HOH HOH A . C 3 HOH 81 281 81 HOH HOH A . C 3 HOH 82 282 82 HOH HOH A . C 3 HOH 83 283 83 HOH HOH A . C 3 HOH 84 284 84 HOH HOH A . C 3 HOH 85 285 85 HOH HOH A . C 3 HOH 86 286 86 HOH HOH A . C 3 HOH 87 287 87 HOH HOH A . C 3 HOH 88 288 88 HOH HOH A . C 3 HOH 89 289 89 HOH HOH A . C 3 HOH 90 290 90 HOH HOH A . C 3 HOH 91 291 91 HOH HOH A . C 3 HOH 92 292 92 HOH HOH A . C 3 HOH 93 293 93 HOH HOH A . C 3 HOH 94 294 94 HOH HOH A . C 3 HOH 95 295 95 HOH HOH A . C 3 HOH 96 296 96 HOH HOH A . C 3 HOH 97 297 97 HOH HOH A . C 3 HOH 98 298 98 HOH HOH A . C 3 HOH 99 299 99 HOH HOH A . C 3 HOH 100 300 100 HOH HOH A . C 3 HOH 101 301 101 HOH HOH A . C 3 HOH 102 302 102 HOH HOH A . C 3 HOH 103 303 103 HOH HOH A . C 3 HOH 104 304 104 HOH HOH A . C 3 HOH 105 305 105 HOH HOH A . C 3 HOH 106 306 106 HOH HOH A . C 3 HOH 107 307 107 HOH HOH A . C 3 HOH 108 308 108 HOH HOH A . C 3 HOH 109 309 109 HOH HOH A . C 3 HOH 110 310 110 HOH HOH A . C 3 HOH 111 311 111 HOH HOH A . C 3 HOH 112 312 112 HOH HOH A . C 3 HOH 113 313 113 HOH HOH A . C 3 HOH 114 314 114 HOH HOH A . C 3 HOH 115 315 115 HOH HOH A . C 3 HOH 116 316 116 HOH HOH A . C 3 HOH 117 317 117 HOH HOH A . C 3 HOH 118 318 118 HOH HOH A . C 3 HOH 119 319 119 HOH HOH A . C 3 HOH 120 320 120 HOH HOH A . C 3 HOH 121 321 121 HOH HOH A . C 3 HOH 122 322 122 HOH HOH A . C 3 HOH 123 323 123 HOH HOH A . C 3 HOH 124 324 124 HOH HOH A . C 3 HOH 125 325 125 HOH HOH A . C 3 HOH 126 326 126 HOH HOH A . C 3 HOH 127 327 127 HOH HOH A . C 3 HOH 128 328 128 HOH HOH A . C 3 HOH 129 329 129 HOH HOH A . C 3 HOH 130 330 130 HOH HOH A . C 3 HOH 131 331 131 HOH HOH A . C 3 HOH 132 332 132 HOH HOH A . C 3 HOH 133 333 133 HOH HOH A . C 3 HOH 134 334 134 HOH HOH A . C 3 HOH 135 335 135 HOH HOH A . C 3 HOH 136 336 136 HOH HOH A . C 3 HOH 137 337 137 HOH HOH A . C 3 HOH 138 338 138 HOH HOH A . C 3 HOH 139 339 139 HOH HOH A . C 3 HOH 140 340 140 HOH HOH A . C 3 HOH 141 341 141 HOH HOH A . C 3 HOH 142 342 142 HOH HOH A . C 3 HOH 143 343 143 HOH HOH A . C 3 HOH 144 344 144 HOH HOH A . C 3 HOH 145 345 145 HOH HOH A . C 3 HOH 146 346 146 HOH HOH A . C 3 HOH 147 347 147 HOH HOH A . C 3 HOH 148 348 148 HOH HOH A . C 3 HOH 149 349 149 HOH HOH A . C 3 HOH 150 350 150 HOH HOH A . C 3 HOH 151 351 151 HOH HOH A . C 3 HOH 152 352 152 HOH HOH A . C 3 HOH 153 353 153 HOH HOH A . C 3 HOH 154 354 154 HOH HOH A . C 3 HOH 155 355 155 HOH HOH A . C 3 HOH 156 356 156 HOH HOH A . C 3 HOH 157 357 157 HOH HOH A . C 3 HOH 158 358 158 HOH HOH A . C 3 HOH 159 359 159 HOH HOH A . C 3 HOH 160 360 160 HOH HOH A . C 3 HOH 161 361 161 HOH HOH A . C 3 HOH 162 362 162 HOH HOH A . C 3 HOH 163 363 163 HOH HOH A . C 3 HOH 164 364 164 HOH HOH A . C 3 HOH 165 365 165 HOH HOH A . C 3 HOH 166 366 166 HOH HOH A . C 3 HOH 167 367 167 HOH HOH A . C 3 HOH 168 368 168 HOH HOH A . C 3 HOH 169 369 169 HOH HOH A . C 3 HOH 170 370 170 HOH HOH A . C 3 HOH 171 371 171 HOH HOH A . C 3 HOH 172 372 172 HOH HOH A . C 3 HOH 173 373 173 HOH HOH A . C 3 HOH 174 374 174 HOH HOH A . C 3 HOH 175 375 175 HOH HOH A . C 3 HOH 176 376 176 HOH HOH A . C 3 HOH 177 377 177 HOH HOH A . C 3 HOH 178 378 178 HOH HOH A . C 3 HOH 179 379 179 HOH HOH A . C 3 HOH 180 380 180 HOH HOH A . C 3 HOH 181 381 181 HOH HOH A . C 3 HOH 182 382 182 HOH HOH A . C 3 HOH 183 383 183 HOH HOH A . C 3 HOH 184 384 184 HOH HOH A . C 3 HOH 185 385 185 HOH HOH A . C 3 HOH 186 386 186 HOH HOH A . C 3 HOH 187 387 187 HOH HOH A . C 3 HOH 188 388 188 HOH HOH A . C 3 HOH 189 389 189 HOH HOH A . C 3 HOH 190 390 190 HOH HOH A . C 3 HOH 191 391 191 HOH HOH A . C 3 HOH 192 392 192 HOH HOH A . C 3 HOH 193 393 193 HOH HOH A . C 3 HOH 194 394 194 HOH HOH A . C 3 HOH 195 395 195 HOH HOH A . C 3 HOH 196 396 196 HOH HOH A . C 3 HOH 197 397 197 HOH HOH A . C 3 HOH 198 398 198 HOH HOH A . C 3 HOH 199 399 199 HOH HOH A . C 3 HOH 200 400 200 HOH HOH A . C 3 HOH 201 401 201 HOH HOH A . C 3 HOH 202 402 202 HOH HOH A . C 3 HOH 203 403 203 HOH HOH A . C 3 HOH 204 404 204 HOH HOH A . C 3 HOH 205 405 205 HOH HOH A . C 3 HOH 206 406 206 HOH HOH A . C 3 HOH 207 407 207 HOH HOH A . C 3 HOH 208 408 208 HOH HOH A . C 3 HOH 209 409 209 HOH HOH A . C 3 HOH 210 410 210 HOH HOH A . C 3 HOH 211 411 211 HOH HOH A . C 3 HOH 212 412 212 HOH HOH A . C 3 HOH 213 413 213 HOH HOH A . C 3 HOH 214 414 214 HOH HOH A . C 3 HOH 215 415 215 HOH HOH A . C 3 HOH 216 416 216 HOH HOH A . C 3 HOH 217 417 217 HOH HOH A . C 3 HOH 218 418 218 HOH HOH A . C 3 HOH 219 419 219 HOH HOH A . C 3 HOH 220 420 220 HOH HOH A . C 3 HOH 221 421 221 HOH HOH A . C 3 HOH 222 422 222 HOH HOH A . C 3 HOH 223 423 223 HOH HOH A . C 3 HOH 224 424 224 HOH HOH A . C 3 HOH 225 425 225 HOH HOH A . C 3 HOH 226 426 226 HOH HOH A . C 3 HOH 227 427 227 HOH HOH A . C 3 HOH 228 428 228 HOH HOH A . C 3 HOH 229 429 229 HOH HOH A . C 3 HOH 230 430 230 HOH HOH A . C 3 HOH 231 431 231 HOH HOH A . C 3 HOH 232 432 232 HOH HOH A . C 3 HOH 233 433 233 HOH HOH A . C 3 HOH 234 434 234 HOH HOH A . C 3 HOH 235 435 235 HOH HOH A . C 3 HOH 236 436 236 HOH HOH A . C 3 HOH 237 437 237 HOH HOH A . C 3 HOH 238 438 238 HOH HOH A . C 3 HOH 239 439 239 HOH HOH A . C 3 HOH 240 440 240 HOH HOH A . C 3 HOH 241 441 241 HOH HOH A . C 3 HOH 242 442 242 HOH HOH A . C 3 HOH 243 443 243 HOH HOH A . C 3 HOH 244 444 244 HOH HOH A . C 3 HOH 245 445 245 HOH HOH A . C 3 HOH 246 446 246 HOH HOH A . C 3 HOH 247 447 247 HOH HOH A . C 3 HOH 248 448 248 HOH HOH A . C 3 HOH 249 449 249 HOH HOH A . C 3 HOH 250 450 250 HOH HOH A . C 3 HOH 251 451 251 HOH HOH A . C 3 HOH 252 452 252 HOH HOH A . C 3 HOH 253 453 253 HOH HOH A . C 3 HOH 254 454 254 HOH HOH A . C 3 HOH 255 455 255 HOH HOH A . C 3 HOH 256 456 256 HOH HOH A . C 3 HOH 257 457 257 HOH HOH A . C 3 HOH 258 458 258 HOH HOH A . C 3 HOH 259 459 259 HOH HOH A . C 3 HOH 260 460 260 HOH HOH A . C 3 HOH 261 461 261 HOH HOH A . C 3 HOH 262 462 262 HOH HOH A . C 3 HOH 263 463 263 HOH HOH A . C 3 HOH 264 464 264 HOH HOH A . C 3 HOH 265 465 265 HOH HOH A . C 3 HOH 266 466 266 HOH HOH A . C 3 HOH 267 467 267 HOH HOH A . C 3 HOH 268 468 268 HOH HOH A . C 3 HOH 269 469 269 HOH HOH A . C 3 HOH 270 470 270 HOH HOH A . C 3 HOH 271 471 271 HOH HOH A . C 3 HOH 272 472 272 HOH HOH A . C 3 HOH 273 473 273 HOH HOH A . C 3 HOH 274 474 274 HOH HOH A . C 3 HOH 275 475 275 HOH HOH A . C 3 HOH 276 476 276 HOH HOH A . C 3 HOH 277 477 277 HOH HOH A . C 3 HOH 278 478 278 HOH HOH A . C 3 HOH 279 479 279 HOH HOH A . C 3 HOH 280 480 280 HOH HOH A . C 3 HOH 281 481 281 HOH HOH A . C 3 HOH 282 482 282 HOH HOH A . C 3 HOH 283 483 283 HOH HOH A . C 3 HOH 284 484 284 HOH HOH A . C 3 HOH 285 485 285 HOH HOH A . C 3 HOH 286 486 286 HOH HOH A . C 3 HOH 287 487 287 HOH HOH A . C 3 HOH 288 488 288 HOH HOH A . C 3 HOH 289 489 289 HOH HOH A . C 3 HOH 290 490 290 HOH HOH A . C 3 HOH 291 491 291 HOH HOH A . C 3 HOH 292 492 292 HOH HOH A . C 3 HOH 293 493 293 HOH HOH A . C 3 HOH 294 494 294 HOH HOH A . C 3 HOH 295 495 295 HOH HOH A . C 3 HOH 296 496 296 HOH HOH A . C 3 HOH 297 497 297 HOH HOH A . C 3 HOH 298 498 298 HOH HOH A . C 3 HOH 299 499 299 HOH HOH A . C 3 HOH 300 500 300 HOH HOH A . C 3 HOH 301 501 301 HOH HOH A . C 3 HOH 302 502 302 HOH HOH A . C 3 HOH 303 503 303 HOH HOH A . C 3 HOH 304 504 304 HOH HOH A . C 3 HOH 305 505 305 HOH HOH A . C 3 HOH 306 506 306 HOH HOH A . C 3 HOH 307 507 307 HOH HOH A . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal BOS 'data collection' . ? 1 PHASER phasing . ? 2 PHENIX refinement '(phenix.refine: 1.8_1069)' ? 3 MOSFLM 'data reduction' . ? 4 SCALA 'data scaling' . ? 5 # _cell.entry_id 4LVZ _cell.length_a 26.820 _cell.length_b 68.510 _cell.length_c 157.890 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4LVZ _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # _exptl.entry_id 4LVZ _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.51 _exptl_crystal.density_percent_sol 51.07 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 303 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details ;2,4-methyl-pentanediol, spermine, sodium cacodylate, sodium chloride, dithiothreitol, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 303K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2013-01-19 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.1051 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 5.0.2' _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 5.0.2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.1051 # _reflns.entry_id 4LVZ _reflns.observed_criterion_sigma_I 4.4 _reflns.observed_criterion_sigma_F 4.4 _reflns.d_resolution_low 41.74 _reflns.d_resolution_high 1.77 _reflns.number_obs ? _reflns.number_all 28959 _reflns.percent_possible_obs 98.7 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3.3 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.77 _reflns_shell.d_res_low 1.86 _reflns_shell.percent_possible_all 99.8 _reflns_shell.Rmerge_I_obs 0.185 _reflns_shell.pdbx_Rsym_value 0.170 _reflns_shell.meanI_over_sigI_obs 4.4 _reflns_shell.pdbx_redundancy 3.1 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 4204 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4LVZ _refine.ls_number_reflns_obs 28895 _refine.ls_number_reflns_all 28959 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.35 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 28.710 _refine.ls_d_res_high 1.77 _refine.ls_percent_reflns_obs 97.73 _refine.ls_R_factor_obs 0.2211 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2192 _refine.ls_R_factor_R_free 0.2598 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.00 _refine.ls_number_reflns_R_free 1446 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details '5% random' _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.23 _refine.pdbx_overall_phase_error 28.36 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1913 _refine_hist.pdbx_number_atoms_ligand 11 _refine_hist.number_atoms_solvent 307 _refine_hist.number_atoms_total 2231 _refine_hist.d_res_high 1.77 _refine_hist.d_res_low 28.710 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 0.004 ? ? 2149 ? 'X-RAY DIFFRACTION' f_angle_d 0.919 ? ? 3337 ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 11.150 ? ? 1050 ? 'X-RAY DIFFRACTION' f_chiral_restr 0.041 ? ? 445 ? 'X-RAY DIFFRACTION' f_plane_restr 0.008 ? ? 90 ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id . 1.7680 1.8312 2728 0.2785 100.00 0.3521 . . 144 . . . . 'X-RAY DIFFRACTION' . 1.8312 1.9045 2763 0.2708 100.00 0.2937 . . 145 . . . . 'X-RAY DIFFRACTION' . 1.9045 1.9912 2733 0.2766 100.00 0.3120 . . 144 . . . . 'X-RAY DIFFRACTION' . 1.9912 2.0961 2772 0.2629 100.00 0.2672 . . 146 . . . . 'X-RAY DIFFRACTION' . 2.0961 2.2274 2804 0.2654 100.00 0.3501 . . 147 . . . . 'X-RAY DIFFRACTION' . 2.2274 2.3993 2744 0.2602 100.00 0.3133 . . 145 . . . . 'X-RAY DIFFRACTION' . 2.3993 2.6406 2810 0.2569 100.00 0.2586 . . 148 . . . . 'X-RAY DIFFRACTION' . 2.6406 3.0223 2817 0.2411 100.00 0.2778 . . 148 . . . . 'X-RAY DIFFRACTION' . 3.0223 3.8064 2749 0.1883 96.00 0.2319 . . 145 . . . . 'X-RAY DIFFRACTION' . 3.8064 28.7133 2529 0.1737 84.00 0.2130 . . 134 . . . . 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 4LVZ _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 4LVZ _struct.title 'Structure of the THF riboswitch bound to 2,6-diaminopurine' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4LVZ _struct_keywords.pdbx_keywords RNA _struct_keywords.text ;Aptamers, Nucleotide, Bacillus subtilis, Bacterial Proteins, Base Sequence, Binding Sites, Calorimetry, Folic Acid, Gene Expression Regulation, Bacterial, Guanine, Leucovorin, Ligands, Magnesium, Molecular Sequence Data, Nucleic Acid Conformation, Point Mutation, Protein Binding, Protein Structure, Secondary, RNA, Riboswitch, S-Adenosylmethionine, Streptococcus mutans, Terminator Regions, Genetic, Tetrahydrofolates, Thermodynamics, Transcription, three-way junction, pseudoknot, regulation, ncRNA, 2, 6-diaminopurine, mRNA ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 4LVZ _struct_ref.pdbx_db_accession 4LVZ _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ;GGAGAGUAGAUGAUUCGCGUUAAGUGUGUGUGAAUGGGAUGUCGUCACACAACGAAGCGAGAGCGCGGUGAAUCAUUGCA UCCGCUCCA ; _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4LVZ _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 89 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 4LVZ _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 89 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 89 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 88 N3 ? ? A G 1 A C 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 88 O2 ? ? A G 1 A C 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 88 N4 ? ? A G 1 A C 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 87 N3 ? ? A G 2 A C 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 87 O2 ? ? A G 2 A C 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 87 N4 ? ? A G 2 A C 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A A 3 N1 ? ? ? 1_555 A U 86 N3 ? ? A A 3 A U 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A A 3 N6 ? ? ? 1_555 A U 86 O4 ? ? A A 3 A U 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 4 N1 ? ? ? 1_555 A C 85 N3 ? ? A G 4 A C 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 4 N2 ? ? ? 1_555 A C 85 O2 ? ? A G 4 A C 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A G 4 O6 ? ? ? 1_555 A C 85 N4 ? ? A G 4 A C 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A A 5 N1 ? ? ? 1_555 A G 84 N1 ? ? A A 5 A G 84 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog13 hydrog ? ? A A 5 N6 ? ? ? 1_555 A G 84 O6 ? ? A A 5 A G 84 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog14 hydrog ? ? A G 6 N2 ? ? ? 1_555 A G 37 O6 ? ? A G 6 A G 37 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog15 hydrog ? ? A A 8 N3 ? ? ? 1_555 A G 44 N2 ? ? A A 8 A G 44 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog16 hydrog ? ? A A 8 N7 ? ? ? 1_555 A G 78 N2 ? ? A A 8 A G 78 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog17 hydrog ? ? A G 9 N1 ? ? ? 1_555 A U 77 O2 ? ? A G 9 A U 77 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog18 hydrog ? ? A G 9 O6 ? ? ? 1_555 A U 77 N3 ? ? A G 9 A U 77 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog19 hydrog ? ? A A 10 N1 ? ? ? 1_555 A U 76 N3 ? ? A A 10 A U 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A A 10 N6 ? ? ? 1_555 A U 76 O4 ? ? A A 10 A U 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A U 11 N3 ? ? ? 1_555 A A 75 N1 ? ? A U 11 A A 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A U 11 O4 ? ? ? 1_555 A A 75 N6 ? ? A U 11 A A 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A G 12 N1 ? ? ? 1_555 A C 74 N3 ? ? A G 12 A C 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A G 12 N2 ? ? ? 1_555 A C 74 O2 ? ? A G 12 A C 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A G 12 O6 ? ? ? 1_555 A C 74 N4 ? ? A G 12 A C 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A A 13 N1 ? ? ? 1_555 A U 73 N3 ? ? A A 13 A U 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A A 13 N6 ? ? ? 1_555 A U 73 O4 ? ? A A 13 A U 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A U 14 N3 ? ? ? 1_555 A A 72 N1 ? ? A U 14 A A 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A U 14 O4 ? ? ? 1_555 A A 72 N6 ? ? A U 14 A A 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A U 15 N3 ? ? ? 1_555 A A 71 N1 ? ? A U 15 A A 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A U 15 O4 ? ? ? 1_555 A A 71 N6 ? ? A U 15 A A 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A C 16 N3 ? ? ? 1_555 A G 70 N1 ? ? A C 16 A G 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A C 16 N4 ? ? ? 1_555 A G 70 O6 ? ? A C 16 A G 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A C 16 O2 ? ? ? 1_555 A G 70 N2 ? ? A C 16 A G 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A G 17 N1 ? ? ? 1_555 A U 69 O2 ? ? A G 17 A U 69 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog36 hydrog ? ? A G 17 O6 ? ? ? 1_555 A U 69 N3 ? ? A G 17 A U 69 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog37 hydrog ? ? A C 18 N3 ? ? ? 1_555 A G 67 N1 ? ? A C 18 A G 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A C 18 N4 ? ? ? 1_555 A G 67 O6 ? ? A C 18 A G 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A C 18 O2 ? ? ? 1_555 A G 67 N2 ? ? A C 18 A G 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A G 19 N2 ? ? ? 1_555 A A 22 N1 ? ? A G 19 A A 22 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog41 hydrog ? ? A G 19 N1 ? ? ? 1_555 A C 66 N3 ? ? A G 19 A C 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A G 19 N2 ? ? ? 1_555 A C 66 O2 ? ? A G 19 A C 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A G 19 O6 ? ? ? 1_555 A C 66 N4 ? ? A G 19 A C 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A U 20 N3 ? ? ? 1_555 A G 65 O6 ? ? A U 20 A G 65 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog45 hydrog ? ? A U 20 O2 ? ? ? 1_555 A G 65 N1 ? ? A U 20 A G 65 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog46 hydrog ? ? A A 23 N6 ? ? ? 1_555 A A 55 N1 ? ? A A 23 A A 55 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog47 hydrog ? ? A A 23 N7 ? ? ? 1_555 A A 55 N6 ? ? A A 23 A A 55 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog48 hydrog ? ? A A 23 N1 ? ? ? 1_555 A G 67 N2 ? ? A A 23 A G 67 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog49 hydrog ? ? A G 24 O6 ? ? ? 1_555 A G 54 N2 ? ? A G 24 A G 54 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog50 hydrog ? ? A G 26 N1 ? ? ? 1_555 A A 52 N1 ? ? A G 26 A A 52 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog51 hydrog ? ? A G 26 O6 ? ? ? 1_555 A A 52 N6 ? ? A G 26 A A 52 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog52 hydrog ? ? A U 27 N3 ? ? ? 1_555 A A 51 N1 ? ? A U 27 A A 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A U 27 O4 ? ? ? 1_555 A A 51 N6 ? ? A U 27 A A 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A G 28 N1 ? ? ? 1_555 A C 50 N3 ? ? A G 28 A C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A G 28 N2 ? ? ? 1_555 A C 50 O2 ? ? A G 28 A C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A G 28 O6 ? ? ? 1_555 A C 50 N4 ? ? A G 28 A C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A U 29 N3 ? ? ? 1_555 A A 49 N1 ? ? A U 29 A A 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A U 29 O4 ? ? ? 1_555 A A 49 N6 ? ? A U 29 A A 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A G 30 N1 ? ? ? 1_555 A C 48 N3 ? ? A G 30 A C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A G 30 N2 ? ? ? 1_555 A C 48 O2 ? ? A G 30 A C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A G 30 O6 ? ? ? 1_555 A C 48 N4 ? ? A G 30 A C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A U 31 N3 ? ? ? 1_555 A A 47 N1 ? ? A U 31 A A 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A U 31 O4 ? ? ? 1_555 A A 47 N6 ? ? A U 31 A A 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A G 32 N1 ? ? ? 1_555 A C 46 N3 ? ? A G 32 A C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A G 32 N2 ? ? ? 1_555 A C 46 O2 ? ? A G 32 A C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A G 32 O6 ? ? ? 1_555 A C 46 N4 ? ? A G 32 A C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A A 33 N1 ? ? ? 1_555 A U 45 N3 ? ? A A 33 A U 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A A 33 N6 ? ? ? 1_555 A U 45 O4 ? ? A A 33 A U 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A A 34 N1 ? ? ? 1_555 A G 44 N1 ? ? A A 34 A G 44 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog70 hydrog ? ? A A 34 N6 ? ? ? 1_555 A G 44 O6 ? ? A A 34 A G 44 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog71 hydrog ? ? A U 35 N3 ? ? ? 1_555 A U 42 O4 ? ? A U 35 A U 42 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog72 hydrog ? ? A G 37 N1 ? ? ? 1_555 A C 83 N3 ? ? A G 37 A C 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? A G 37 N2 ? ? ? 1_555 A C 83 O2 ? ? A G 37 A C 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? A G 37 O6 ? ? ? 1_555 A C 83 N4 ? ? A G 37 A C 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? A G 38 N1 ? ? ? 1_555 A C 82 N3 ? ? A G 38 A C 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? A G 38 N2 ? ? ? 1_555 A C 82 O2 ? ? A G 38 A C 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? A G 38 O6 ? ? ? 1_555 A C 82 N4 ? ? A G 38 A C 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? A A 39 N1 ? ? ? 1_555 A U 81 N3 ? ? A A 39 A U 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? A A 39 N6 ? ? ? 1_555 A U 81 O4 ? ? A A 39 A U 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? A U 40 N3 ? ? ? 1_555 A A 80 N1 ? ? A U 40 A A 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? A U 40 O4 ? ? ? 1_555 A A 80 N6 ? ? A U 40 A A 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? A G 41 N1 ? ? ? 1_555 A C 79 N3 ? ? A G 41 A C 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? A G 41 N2 ? ? ? 1_555 A C 79 O2 ? ? A G 41 A C 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? A G 41 O6 ? ? ? 1_555 A C 79 N4 ? ? A G 41 A C 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? A A 56 N3 ? ? ? 1_555 A G 65 N2 ? ? A A 56 A G 65 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog86 hydrog ? ? A G 57 N1 ? ? ? 1_555 A C 64 N3 ? ? A G 57 A C 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog87 hydrog ? ? A G 57 N2 ? ? ? 1_555 A C 64 O2 ? ? A G 57 A C 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? A G 57 O6 ? ? ? 1_555 A C 64 N4 ? ? A G 57 A C 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog89 hydrog ? ? A C 58 N3 ? ? ? 1_555 A G 63 N1 ? ? A C 58 A G 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog90 hydrog ? ? A C 58 N4 ? ? ? 1_555 A G 63 O6 ? ? A C 58 A G 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog91 hydrog ? ? A C 58 O2 ? ? ? 1_555 A G 63 N2 ? ? A C 58 A G 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog92 hydrog ? ? A G 59 N2 ? ? ? 1_555 A A 62 N7 ? ? A G 59 A A 62 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id 6AP _struct_site.pdbx_auth_seq_id 101 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 7 _struct_site.details 'BINDING SITE FOR RESIDUE 6AP A 101' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 7 U A 7 ? U A 7 . ? 1_555 ? 2 AC1 7 A A 8 ? A A 8 . ? 1_555 ? 3 AC1 7 U A 35 ? U A 35 . ? 1_555 ? 4 AC1 7 U A 42 ? U A 42 . ? 1_555 ? 5 AC1 7 G A 44 ? G A 44 . ? 1_555 ? 6 AC1 7 C A 79 ? C A 79 . ? 1_555 ? 7 AC1 7 HOH C . ? HOH A 235 . ? 1_555 ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 "O3'" A U 35 ? ? O A HOH 405 ? ? 1.81 2 1 O A HOH 347 ? ? O A HOH 351 ? ? 1.85 3 1 O A HOH 269 ? ? O A HOH 300 ? ? 1.87 4 1 O A HOH 450 ? ? O A HOH 468 ? ? 1.88 5 1 O A HOH 236 ? ? O A HOH 403 ? ? 1.92 6 1 O A HOH 406 ? ? O A HOH 445 ? ? 1.92 7 1 O A HOH 402 ? ? O A HOH 437 ? ? 1.94 8 1 O4 A U 15 ? ? O A HOH 463 ? ? 1.98 9 1 O A HOH 449 ? ? O A HOH 500 ? ? 1.99 10 1 O A HOH 325 ? ? O A HOH 449 ? ? 2.01 11 1 O A HOH 251 ? ? O A HOH 309 ? ? 2.01 12 1 OP2 A G 32 ? ? O A HOH 228 ? ? 2.03 13 1 O A HOH 238 ? ? O A HOH 362 ? ? 2.04 14 1 O6 A G 68 ? ? O A HOH 271 ? ? 2.09 15 1 O A HOH 385 ? ? O A HOH 434 ? ? 2.11 16 1 O A HOH 226 ? ? O A HOH 268 ? ? 2.11 17 1 O A HOH 270 ? ? O A HOH 311 ? ? 2.13 18 1 O A HOH 261 ? ? O A HOH 279 ? ? 2.15 19 1 O A HOH 394 ? ? O A HOH 428 ? ? 2.15 20 1 O A HOH 438 ? ? O A HOH 456 ? ? 2.18 21 1 OP2 A G 36 ? ? O A HOH 348 ? ? 2.18 22 1 OP2 A C 43 ? ? O A HOH 444 ? ? 2.19 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 "O4'" _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 C _pdbx_validate_rmsd_angle.auth_seq_id_1 79 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 "C1'" _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 C _pdbx_validate_rmsd_angle.auth_seq_id_2 79 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 N1 _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 C _pdbx_validate_rmsd_angle.auth_seq_id_3 79 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 112.73 _pdbx_validate_rmsd_angle.angle_target_value 108.50 _pdbx_validate_rmsd_angle.angle_deviation 4.23 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.70 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 6AP N9 N Y N 1 6AP C8 C Y N 2 6AP N7 N Y N 3 6AP C5 C Y N 4 6AP C4 C Y N 5 6AP N3 N Y N 6 6AP C2 C Y N 7 6AP N2 N N N 8 6AP N1 N Y N 9 6AP C6 C Y N 10 6AP N6 N N N 11 6AP HN9 H N N 12 6AP H8 H N N 13 6AP HN21 H N N 14 6AP HN22 H N N 15 6AP HN61 H N N 16 6AP HN62 H N N 17 A OP3 O N N 18 A P P N N 19 A OP1 O N N 20 A OP2 O N N 21 A "O5'" O N N 22 A "C5'" C N N 23 A "C4'" C N R 24 A "O4'" O N N 25 A "C3'" C N S 26 A "O3'" O N N 27 A "C2'" C N R 28 A "O2'" O N N 29 A "C1'" C N R 30 A N9 N Y N 31 A C8 C Y N 32 A N7 N Y N 33 A C5 C Y N 34 A C6 C Y N 35 A N6 N N N 36 A N1 N Y N 37 A C2 C Y N 38 A N3 N Y N 39 A C4 C Y N 40 A HOP3 H N N 41 A HOP2 H N N 42 A "H5'" H N N 43 A "H5''" H N N 44 A "H4'" H N N 45 A "H3'" H N N 46 A "HO3'" H N N 47 A "H2'" H N N 48 A "HO2'" H N N 49 A "H1'" H N N 50 A H8 H N N 51 A H61 H N N 52 A H62 H N N 53 A H2 H N N 54 C OP3 O N N 55 C P P N N 56 C OP1 O N N 57 C OP2 O N N 58 C "O5'" O N N 59 C "C5'" C N N 60 C "C4'" C N R 61 C "O4'" O N N 62 C "C3'" C N S 63 C "O3'" O N N 64 C "C2'" C N R 65 C "O2'" O N N 66 C "C1'" C N R 67 C N1 N N N 68 C C2 C N N 69 C O2 O N N 70 C N3 N N N 71 C C4 C N N 72 C N4 N N N 73 C C5 C N N 74 C C6 C N N 75 C HOP3 H N N 76 C HOP2 H N N 77 C "H5'" H N N 78 C "H5''" H N N 79 C "H4'" H N N 80 C "H3'" H N N 81 C "HO3'" H N N 82 C "H2'" H N N 83 C "HO2'" H N N 84 C "H1'" H N N 85 C H41 H N N 86 C H42 H N N 87 C H5 H N N 88 C H6 H N N 89 G OP3 O N N 90 G P P N N 91 G OP1 O N N 92 G OP2 O N N 93 G "O5'" O N N 94 G "C5'" C N N 95 G "C4'" C N R 96 G "O4'" O N N 97 G "C3'" C N S 98 G "O3'" O N N 99 G "C2'" C N R 100 G "O2'" O N N 101 G "C1'" C N R 102 G N9 N Y N 103 G C8 C Y N 104 G N7 N Y N 105 G C5 C Y N 106 G C6 C N N 107 G O6 O N N 108 G N1 N N N 109 G C2 C N N 110 G N2 N N N 111 G N3 N N N 112 G C4 C Y N 113 G HOP3 H N N 114 G HOP2 H N N 115 G "H5'" H N N 116 G "H5''" H N N 117 G "H4'" H N N 118 G "H3'" H N N 119 G "HO3'" H N N 120 G "H2'" H N N 121 G "HO2'" H N N 122 G "H1'" H N N 123 G H8 H N N 124 G H1 H N N 125 G H21 H N N 126 G H22 H N N 127 HOH O O N N 128 HOH H1 H N N 129 HOH H2 H N N 130 U OP3 O N N 131 U P P N N 132 U OP1 O N N 133 U OP2 O N N 134 U "O5'" O N N 135 U "C5'" C N N 136 U "C4'" C N R 137 U "O4'" O N N 138 U "C3'" C N S 139 U "O3'" O N N 140 U "C2'" C N R 141 U "O2'" O N N 142 U "C1'" C N R 143 U N1 N N N 144 U C2 C N N 145 U O2 O N N 146 U N3 N N N 147 U C4 C N N 148 U O4 O N N 149 U C5 C N N 150 U C6 C N N 151 U HOP3 H N N 152 U HOP2 H N N 153 U "H5'" H N N 154 U "H5''" H N N 155 U "H4'" H N N 156 U "H3'" H N N 157 U "HO3'" H N N 158 U "H2'" H N N 159 U "HO2'" H N N 160 U "H1'" H N N 161 U H3 H N N 162 U H5 H N N 163 U H6 H N N 164 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 6AP N9 C8 sing Y N 1 6AP N9 C4 sing Y N 2 6AP N9 HN9 sing N N 3 6AP C8 N7 doub Y N 4 6AP C8 H8 sing N N 5 6AP N7 C5 sing Y N 6 6AP C5 C4 sing Y N 7 6AP C5 C6 doub Y N 8 6AP C4 N3 doub Y N 9 6AP N3 C2 sing Y N 10 6AP C2 N2 sing N N 11 6AP C2 N1 doub Y N 12 6AP N2 HN21 sing N N 13 6AP N2 HN22 sing N N 14 6AP N1 C6 sing Y N 15 6AP C6 N6 sing N N 16 6AP N6 HN61 sing N N 17 6AP N6 HN62 sing N N 18 A OP3 P sing N N 19 A OP3 HOP3 sing N N 20 A P OP1 doub N N 21 A P OP2 sing N N 22 A P "O5'" sing N N 23 A OP2 HOP2 sing N N 24 A "O5'" "C5'" sing N N 25 A "C5'" "C4'" sing N N 26 A "C5'" "H5'" sing N N 27 A "C5'" "H5''" sing N N 28 A "C4'" "O4'" sing N N 29 A "C4'" "C3'" sing N N 30 A "C4'" "H4'" sing N N 31 A "O4'" "C1'" sing N N 32 A "C3'" "O3'" sing N N 33 A "C3'" "C2'" sing N N 34 A "C3'" "H3'" sing N N 35 A "O3'" "HO3'" sing N N 36 A "C2'" "O2'" sing N N 37 A "C2'" "C1'" sing N N 38 A "C2'" "H2'" sing N N 39 A "O2'" "HO2'" sing N N 40 A "C1'" N9 sing N N 41 A "C1'" "H1'" sing N N 42 A N9 C8 sing Y N 43 A N9 C4 sing Y N 44 A C8 N7 doub Y N 45 A C8 H8 sing N N 46 A N7 C5 sing Y N 47 A C5 C6 sing Y N 48 A C5 C4 doub Y N 49 A C6 N6 sing N N 50 A C6 N1 doub Y N 51 A N6 H61 sing N N 52 A N6 H62 sing N N 53 A N1 C2 sing Y N 54 A C2 N3 doub Y N 55 A C2 H2 sing N N 56 A N3 C4 sing Y N 57 C OP3 P sing N N 58 C OP3 HOP3 sing N N 59 C P OP1 doub N N 60 C P OP2 sing N N 61 C P "O5'" sing N N 62 C OP2 HOP2 sing N N 63 C "O5'" "C5'" sing N N 64 C "C5'" "C4'" sing N N 65 C "C5'" "H5'" sing N N 66 C "C5'" "H5''" sing N N 67 C "C4'" "O4'" sing N N 68 C "C4'" "C3'" sing N N 69 C "C4'" "H4'" sing N N 70 C "O4'" "C1'" sing N N 71 C "C3'" "O3'" sing N N 72 C "C3'" "C2'" sing N N 73 C "C3'" "H3'" sing N N 74 C "O3'" "HO3'" sing N N 75 C "C2'" "O2'" sing N N 76 C "C2'" "C1'" sing N N 77 C "C2'" "H2'" sing N N 78 C "O2'" "HO2'" sing N N 79 C "C1'" N1 sing N N 80 C "C1'" "H1'" sing N N 81 C N1 C2 sing N N 82 C N1 C6 sing N N 83 C C2 O2 doub N N 84 C C2 N3 sing N N 85 C N3 C4 doub N N 86 C C4 N4 sing N N 87 C C4 C5 sing N N 88 C N4 H41 sing N N 89 C N4 H42 sing N N 90 C C5 C6 doub N N 91 C C5 H5 sing N N 92 C C6 H6 sing N N 93 G OP3 P sing N N 94 G OP3 HOP3 sing N N 95 G P OP1 doub N N 96 G P OP2 sing N N 97 G P "O5'" sing N N 98 G OP2 HOP2 sing N N 99 G "O5'" "C5'" sing N N 100 G "C5'" "C4'" sing N N 101 G "C5'" "H5'" sing N N 102 G "C5'" "H5''" sing N N 103 G "C4'" "O4'" sing N N 104 G "C4'" "C3'" sing N N 105 G "C4'" "H4'" sing N N 106 G "O4'" "C1'" sing N N 107 G "C3'" "O3'" sing N N 108 G "C3'" "C2'" sing N N 109 G "C3'" "H3'" sing N N 110 G "O3'" "HO3'" sing N N 111 G "C2'" "O2'" sing N N 112 G "C2'" "C1'" sing N N 113 G "C2'" "H2'" sing N N 114 G "O2'" "HO2'" sing N N 115 G "C1'" N9 sing N N 116 G "C1'" "H1'" sing N N 117 G N9 C8 sing Y N 118 G N9 C4 sing Y N 119 G C8 N7 doub Y N 120 G C8 H8 sing N N 121 G N7 C5 sing Y N 122 G C5 C6 sing N N 123 G C5 C4 doub Y N 124 G C6 O6 doub N N 125 G C6 N1 sing N N 126 G N1 C2 sing N N 127 G N1 H1 sing N N 128 G C2 N2 sing N N 129 G C2 N3 doub N N 130 G N2 H21 sing N N 131 G N2 H22 sing N N 132 G N3 C4 sing N N 133 HOH O H1 sing N N 134 HOH O H2 sing N N 135 U OP3 P sing N N 136 U OP3 HOP3 sing N N 137 U P OP1 doub N N 138 U P OP2 sing N N 139 U P "O5'" sing N N 140 U OP2 HOP2 sing N N 141 U "O5'" "C5'" sing N N 142 U "C5'" "C4'" sing N N 143 U "C5'" "H5'" sing N N 144 U "C5'" "H5''" sing N N 145 U "C4'" "O4'" sing N N 146 U "C4'" "C3'" sing N N 147 U "C4'" "H4'" sing N N 148 U "O4'" "C1'" sing N N 149 U "C3'" "O3'" sing N N 150 U "C3'" "C2'" sing N N 151 U "C3'" "H3'" sing N N 152 U "O3'" "HO3'" sing N N 153 U "C2'" "O2'" sing N N 154 U "C2'" "C1'" sing N N 155 U "C2'" "H2'" sing N N 156 U "O2'" "HO2'" sing N N 157 U "C1'" N1 sing N N 158 U "C1'" "H1'" sing N N 159 U N1 C2 sing N N 160 U N1 C6 sing N N 161 U C2 O2 doub N N 162 U C2 N3 sing N N 163 U N3 C4 sing N N 164 U N3 H3 sing N N 165 U C4 O4 doub N N 166 U C4 C5 sing N N 167 U C5 C6 doub N N 168 U C5 H5 sing N N 169 U C6 H6 sing N N 170 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4LVZ 'double helix' 4LVZ 'a-form double helix' 4LVZ 'bulge loop' 4LVZ 'mismatched base pair' 4LVZ 'triple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 88 1_555 -0.456 -0.141 -0.274 -6.668 -6.609 -5.509 1 A_G1:C88_A A 1 ? A 88 ? 19 1 1 A G 2 1_555 A C 87 1_555 -0.581 0.006 -0.024 -6.999 -12.141 5.510 2 A_G2:C87_A A 2 ? A 87 ? 19 1 1 A A 3 1_555 A U 86 1_555 -0.025 0.074 -0.176 -7.710 -14.904 2.181 3 A_A3:U86_A A 3 ? A 86 ? 20 1 1 A G 4 1_555 A C 85 1_555 -0.086 0.015 0.007 -14.276 -21.995 -0.866 4 A_G4:C85_A A 4 ? A 85 ? 19 1 1 A A 5 1_555 A G 84 1_555 -0.038 1.555 -0.311 -19.181 -12.912 -18.936 5 A_A5:G84_A A 5 ? A 84 ? 8 1 1 A G 37 1_555 A C 83 1_555 -0.317 -0.140 -0.367 -6.537 -8.712 2.560 6 A_G37:C83_A A 37 ? A 83 ? 19 1 1 A G 38 1_555 A C 82 1_555 -0.266 -0.227 -0.312 -12.329 -9.430 0.613 7 A_G38:C82_A A 38 ? A 82 ? 19 1 1 A A 39 1_555 A U 81 1_555 -0.018 -0.074 -0.005 -5.181 -5.878 -0.623 8 A_A39:U81_A A 39 ? A 81 ? 20 1 1 A U 40 1_555 A A 80 1_555 0.297 -0.057 0.226 -12.769 -19.460 5.998 9 A_U40:A80_A A 40 ? A 80 ? 20 1 1 A G 41 1_555 A C 79 1_555 -0.644 0.152 -0.541 -41.736 -13.159 4.633 10 A_G41:C79_A A 41 ? A 79 ? 19 1 1 A U 42 1_555 A U 35 1_555 -3.858 -0.832 -0.666 10.340 -9.748 -82.067 11 A_U42:U35_A A 42 ? A 35 ? ? ? 1 A G 44 1_555 A A 34 1_555 -0.024 1.504 -0.303 4.473 -14.902 -17.108 12 A_G44:A34_A A 44 ? A 34 ? 8 1 1 A U 45 1_555 A A 33 1_555 -0.027 -0.064 0.019 7.074 -12.182 -2.042 13 A_U45:A33_A A 45 ? A 33 ? 20 1 1 A C 46 1_555 A G 32 1_555 0.050 -0.185 0.100 3.921 -10.180 1.183 14 A_C46:G32_A A 46 ? A 32 ? 19 1 1 A A 47 1_555 A U 31 1_555 0.022 -0.116 0.162 6.061 -11.325 0.907 15 A_A47:U31_A A 47 ? A 31 ? 20 1 1 A C 48 1_555 A G 30 1_555 0.174 -0.076 0.075 10.485 -15.114 1.184 16 A_C48:G30_A A 48 ? A 30 ? 19 1 1 A A 49 1_555 A U 29 1_555 0.146 -0.093 0.054 5.378 -13.857 1.205 17 A_A49:U29_A A 49 ? A 29 ? 20 1 1 A C 50 1_555 A G 28 1_555 0.182 -0.216 -0.055 7.729 -17.078 2.587 18 A_C50:G28_A A 50 ? A 28 ? 19 1 1 A A 51 1_555 A U 27 1_555 0.233 -0.107 -0.096 -5.956 -10.779 1.266 19 A_A51:U27_A A 51 ? A 27 ? 20 1 1 A A 52 1_555 A G 26 1_555 -0.077 1.394 -0.763 -13.792 -17.611 -9.660 20 A_A52:G26_A A 52 ? A 26 ? 8 1 1 A G 54 1_555 A G 24 1_555 6.979 -1.836 0.758 -13.447 -9.554 -23.954 21 A_G54:G24_A A 54 ? A 24 ? ? ? 1 A A 55 1_555 A A 23 1_555 3.996 1.494 -0.267 18.908 -7.940 -112.746 22 A_A55:A23_A A 55 ? A 23 ? 5 4 1 A G 67 1_555 A C 18 1_555 -0.129 -0.105 0.034 -4.879 -12.666 -0.509 23 A_G67:C18_A A 67 ? A 18 ? 19 1 1 A G 19 1_555 A C 66 1_555 -0.145 -0.178 -0.076 -10.168 -25.924 0.871 24 A_G19:C66_A A 19 ? A 66 ? 19 1 1 A U 20 1_555 A G 65 1_555 2.325 -0.508 0.232 -6.519 -13.947 -9.422 25 A_U20:G65_A A 20 ? A 65 ? 28 1 1 A G 57 1_555 A C 64 1_555 -0.312 -0.074 -0.075 -10.880 -9.562 2.471 26 A_G57:C64_A A 57 ? A 64 ? 19 1 1 A C 58 1_555 A G 63 1_555 0.261 -0.152 0.079 4.136 -3.719 -0.865 27 A_C58:G63_A A 58 ? A 63 ? 19 1 1 A G 59 1_555 A A 62 1_555 8.030 -4.815 0.323 11.839 -4.950 -52.607 28 A_G59:A62_A A 59 ? A 62 ? ? ? 1 A A 8 1_555 A G 78 1_555 -7.232 -5.349 0.182 -14.860 3.310 -17.862 29 A_A8:G78_A A 8 ? A 78 ? ? 10 1 A G 9 1_555 A U 77 1_555 -2.357 -0.454 -0.119 0.359 -1.555 2.423 30 A_G9:U77_A A 9 ? A 77 ? 28 1 1 A A 10 1_555 A U 76 1_555 0.109 -0.122 -0.020 0.383 -11.289 0.252 31 A_A10:U76_A A 10 ? A 76 ? 20 1 1 A U 11 1_555 A A 75 1_555 -0.297 0.015 -0.018 1.313 -14.081 1.207 32 A_U11:A75_A A 11 ? A 75 ? 20 1 1 A G 12 1_555 A C 74 1_555 0.243 -0.511 0.110 -3.338 -14.997 -4.360 33 A_G12:C74_A A 12 ? A 74 ? 19 1 1 A A 13 1_555 A U 73 1_555 0.605 -0.010 0.430 2.030 -7.857 -5.626 34 A_A13:U73_A A 13 ? A 73 ? 20 1 1 A U 14 1_555 A A 72 1_555 -0.203 -0.373 -0.030 -8.207 -22.082 -4.831 35 A_U14:A72_A A 14 ? A 72 ? 20 1 1 A U 15 1_555 A A 71 1_555 -0.195 -0.118 0.467 -11.617 -13.797 -2.985 36 A_U15:A71_A A 15 ? A 71 ? 20 1 1 A C 16 1_555 A G 70 1_555 0.404 -0.088 0.134 4.777 -8.036 0.364 37 A_C16:G70_A A 16 ? A 70 ? 19 1 1 A G 17 1_555 A U 69 1_555 -2.166 -0.592 -0.006 1.551 -12.300 -1.855 38 A_G17:U69_A A 17 ? A 69 ? 28 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 88 1_555 A G 2 1_555 A C 87 1_555 0.268 -2.134 3.241 -0.612 5.498 32.677 -4.611 -0.566 2.849 9.685 1.078 33.129 1 AA_G1G2:C87C88_AA A 1 ? A 88 ? A 2 ? A 87 ? 1 A G 2 1_555 A C 87 1_555 A A 3 1_555 A U 86 1_555 0.098 -1.173 3.283 2.961 3.925 34.403 -2.555 0.282 3.131 6.594 -4.975 34.742 2 AA_G2A3:U86C87_AA A 2 ? A 87 ? A 3 ? A 86 ? 1 A A 3 1_555 A U 86 1_555 A G 4 1_555 A C 85 1_555 0.418 -1.835 3.348 3.264 9.769 31.735 -4.745 -0.214 2.709 17.303 -5.782 33.324 3 AA_A3G4:C85U86_AA A 3 ? A 86 ? A 4 ? A 85 ? 1 A G 4 1_555 A C 85 1_555 A A 5 1_555 A G 84 1_555 -1.098 -1.568 3.193 4.822 2.675 36.547 -2.813 2.342 2.912 4.236 -7.635 36.946 4 AA_G4A5:G84C85_AA A 4 ? A 85 ? A 5 ? A 84 ? 1 A A 5 1_555 A G 84 1_555 A G 37 1_555 A C 83 1_555 -1.753 -3.377 3.418 12.799 5.009 49.341 -4.240 2.862 2.586 5.870 -14.997 51.104 5 AA_A5G37:C83G84_AA A 5 ? A 84 ? A 37 ? A 83 ? 1 A G 37 1_555 A C 83 1_555 A G 38 1_555 A C 82 1_555 -0.849 -1.763 3.394 -3.306 8.520 36.106 -3.884 0.895 2.979 13.482 5.231 37.207 6 AA_G37G38:C82C83_AA A 37 ? A 83 ? A 38 ? A 82 ? 1 A G 38 1_555 A C 82 1_555 A A 39 1_555 A U 81 1_555 -0.752 -1.978 3.007 -3.161 9.467 24.848 -6.306 0.948 2.195 20.954 6.996 26.749 7 AA_G38A39:U81C82_AA A 38 ? A 82 ? A 39 ? A 81 ? 1 A A 39 1_555 A U 81 1_555 A U 40 1_555 A A 80 1_555 1.245 -1.546 3.464 3.022 14.268 35.664 -4.108 -1.518 2.762 22.186 -4.699 38.441 8 AA_A39U40:A80U81_AA A 39 ? A 81 ? A 40 ? A 80 ? 1 A U 40 1_555 A A 80 1_555 A G 41 1_555 A C 79 1_555 1.786 -0.715 3.715 18.085 14.615 39.333 -2.508 -0.353 3.697 19.761 -24.453 45.457 9 AA_U40G41:C79A80_AA A 40 ? A 80 ? A 41 ? A 79 ? 1 A G 41 1_555 A C 79 1_555 A U 42 1_555 A U 35 1_555 -2.339 1.543 2.599 -11.768 6.901 45.164 1.411 2.042 3.267 8.752 14.924 47.076 10 AA_G41U42:U35C79_AA A 41 ? A 79 ? A 42 ? A 35 ? 1 A U 42 1_555 A U 35 1_555 A G 44 1_555 A A 34 1_555 1.351 -1.752 3.361 -5.846 4.391 65.239 -1.796 -1.485 3.133 4.060 5.404 65.603 11 AA_U42G44:A34U35_AA A 42 ? A 35 ? A 44 ? A 34 ? 1 A G 44 1_555 A A 34 1_555 A U 45 1_555 A A 33 1_555 0.916 -1.943 3.096 -3.231 0.430 33.169 -3.455 -2.097 2.971 0.751 5.644 33.325 12 AA_G44U45:A33A34_AA A 44 ? A 34 ? A 45 ? A 33 ? 1 A U 45 1_555 A A 33 1_555 A C 46 1_555 A G 32 1_555 0.429 -1.812 3.342 -0.866 1.201 34.593 -3.232 -0.856 3.268 2.018 1.456 34.624 13 AA_U45C46:G32A33_AA A 45 ? A 33 ? A 46 ? A 32 ? 1 A C 46 1_555 A G 32 1_555 A A 47 1_555 A U 31 1_555 -0.822 -1.597 3.118 -0.930 5.166 29.446 -4.076 1.417 2.827 10.062 1.812 29.900 14 AA_C46A47:U31G32_AA A 46 ? A 32 ? A 47 ? A 31 ? 1 A A 47 1_555 A U 31 1_555 A C 48 1_555 A G 30 1_555 0.165 -1.361 3.191 -0.419 5.559 32.643 -3.271 -0.357 2.924 9.802 0.739 33.103 15 AA_A47C48:G30U31_AA A 47 ? A 31 ? A 48 ? A 30 ? 1 A C 48 1_555 A G 30 1_555 A A 49 1_555 A U 29 1_555 -0.499 -1.473 3.294 -0.240 10.348 32.149 -4.120 0.823 2.707 18.110 0.420 33.732 16 AA_C48A49:U29G30_AA A 48 ? A 30 ? A 49 ? A 29 ? 1 A A 49 1_555 A U 29 1_555 A C 50 1_555 A G 28 1_555 0.419 -1.200 3.189 1.818 7.512 31.724 -3.360 -0.449 2.856 13.493 -3.266 32.628 17 AA_A49C50:G28U29_AA A 49 ? A 29 ? A 50 ? A 28 ? 1 A C 50 1_555 A G 28 1_555 A A 51 1_555 A U 27 1_555 0.233 -1.942 3.505 1.652 14.247 33.296 -5.052 -0.151 2.501 23.552 -2.730 36.173 18 AA_C50A51:U27G28_AA A 50 ? A 28 ? A 51 ? A 27 ? 1 A A 51 1_555 A U 27 1_555 A A 52 1_555 A G 26 1_555 -0.842 -2.096 3.411 7.528 9.048 30.922 -5.108 2.664 2.451 16.250 -13.520 33.035 19 AA_A51A52:G26U27_AA A 51 ? A 27 ? A 52 ? A 26 ? 1 A A 52 1_555 A G 26 1_555 A G 54 1_555 A G 24 1_555 -0.518 -3.241 6.573 5.792 15.679 86.700 -2.983 0.613 6.006 11.331 -4.186 87.981 20 AA_A52G54:G24G26_AA A 52 ? A 26 ? A 54 ? A 24 ? 1 A G 54 1_555 A G 24 1_555 A A 55 1_555 A A 23 1_555 -4.692 -0.561 2.683 6.997 -1.413 18.767 -1.236 15.314 0.928 -4.143 -20.522 20.068 21 AA_G54A55:A23G24_AA A 54 ? A 24 ? A 55 ? A 23 ? 1 A A 55 1_555 A A 23 1_555 A G 67 1_555 A C 18 1_555 0.537 1.209 6.953 -38.966 -135.161 33.544 3.537 -1.119 0.871 -80.820 23.300 142.404 22 AA_A55G67:C18A23_AA A 55 ? A 23 ? A 67 ? A 18 ? 1 A G 19 1_555 A C 66 1_555 A U 20 1_555 A G 65 1_555 -0.303 -0.997 3.063 -0.464 4.456 46.323 -1.608 0.348 2.963 5.648 0.588 46.527 23 AA_G19U20:G65C66_AA A 19 ? A 66 ? A 20 ? A 65 ? 1 A U 20 1_555 A G 65 1_555 A G 57 1_555 A C 64 1_555 -1.865 -2.232 3.164 3.320 6.515 31.394 -5.034 3.877 2.458 11.839 -6.034 32.213 24 AA_U20G57:C64G65_AA A 20 ? A 65 ? A 57 ? A 64 ? 1 A G 57 1_555 A C 64 1_555 A C 58 1_555 A G 63 1_555 0.872 -2.265 2.987 0.665 -2.636 26.068 -4.317 -1.753 3.217 -5.823 -1.469 26.207 25 AA_G57C58:G63C64_AA A 57 ? A 64 ? A 58 ? A 63 ? 1 A C 58 1_555 A G 63 1_555 A G 59 1_555 A A 62 1_555 -4.878 -1.918 3.125 -0.708 1.898 54.710 -2.194 5.264 3.120 2.064 0.770 54.745 26 AA_C58G59:A62G63_AA A 58 ? A 63 ? A 59 ? A 62 ? 1 A A 8 1_555 A G 78 1_555 A G 9 1_555 A U 77 1_555 2.202 -1.482 2.898 0.275 4.557 46.015 -2.225 -2.785 2.759 5.813 -0.351 46.229 27 AA_A8G9:U77G78_AA A 8 ? A 78 ? A 9 ? A 77 ? 1 A G 9 1_555 A U 77 1_555 A A 10 1_555 A U 76 1_555 -0.699 -1.740 3.231 -1.956 4.077 40.894 -2.904 0.790 3.080 5.814 2.789 41.132 28 AA_G9A10:U76U77_AA A 9 ? A 77 ? A 10 ? A 76 ? 1 A A 10 1_555 A U 76 1_555 A U 11 1_555 A A 75 1_555 -0.058 -1.316 3.192 2.085 8.204 30.093 -3.883 0.473 2.737 15.422 -3.919 31.235 29 AA_A10U11:A75U76_AA A 10 ? A 76 ? A 11 ? A 75 ? 1 A U 11 1_555 A A 75 1_555 A G 12 1_555 A C 74 1_555 -0.054 -1.066 3.287 0.239 13.907 35.375 -3.328 0.112 2.695 21.870 -0.375 37.930 30 AA_U11G12:C74A75_AA A 11 ? A 75 ? A 12 ? A 74 ? 1 A G 12 1_555 A C 74 1_555 A A 13 1_555 A U 73 1_555 -0.424 -1.828 3.012 -3.459 5.507 33.463 -3.893 0.238 2.715 9.454 5.938 34.072 31 AA_G12A13:U73C74_AA A 12 ? A 74 ? A 13 ? A 73 ? 1 A A 13 1_555 A U 73 1_555 A U 14 1_555 A A 72 1_555 0.038 -1.359 3.470 5.500 11.927 28.900 -4.655 0.929 2.677 22.489 -10.370 31.687 32 AA_A13U14:A72U73_AA A 13 ? A 73 ? A 14 ? A 72 ? 1 A U 14 1_555 A A 72 1_555 A U 15 1_555 A A 71 1_555 0.392 -1.197 3.362 -4.101 8.337 33.623 -3.240 -1.265 2.924 14.082 6.926 34.848 33 AA_U14U15:A71A72_AA A 14 ? A 72 ? A 15 ? A 71 ? 1 A U 15 1_555 A A 71 1_555 A C 16 1_555 A G 70 1_555 -0.113 -1.060 2.850 2.322 0.983 34.901 -1.891 0.490 2.807 1.637 -3.865 34.990 34 AA_U15C16:G70A71_AA A 15 ? A 71 ? A 16 ? A 70 ? 1 A C 16 1_555 A G 70 1_555 A G 17 1_555 A U 69 1_555 1.617 -2.403 3.195 1.581 6.799 20.280 -8.882 -3.785 2.389 18.610 -4.327 21.436 35 AA_C16G17:U69G70_AA A 16 ? A 70 ? A 17 ? A 69 ? # _atom_sites.entry_id 4LVZ _atom_sites.fract_transf_matrix[1][1] 0.037286 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014596 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006334 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_