data_4LW0 # _entry.id 4LW0 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.387 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4LW0 pdb_00004lw0 10.2210/pdb4lw0/pdb NDB NA2644 ? ? RCSB RCSB081155 ? ? WWPDB D_1000081155 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-03-19 2 'Structure model' 1 1 2024-02-28 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 4 2 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' 3 2 'Structure model' '_struct_site.pdbx_auth_asym_id' 4 2 'Structure model' '_struct_site.pdbx_auth_comp_id' 5 2 'Structure model' '_struct_site.pdbx_auth_seq_id' # _database_PDB_caveat.id 1 _database_PDB_caveat.text 'Residue A G 6 and Residue A U 7 are not properly linked' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4LW0 _pdbx_database_status.recvd_initial_deposition_date 2013-07-26 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 3SD3 . unspecified PDB 4LVV . unspecified PDB 4LVW . unspecified PDB 4LVY . unspecified PDB 4LVX . unspecified PDB 4LVZ . unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Trausch, J.J.' 1 'Batey, R.T.' 2 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'A Disconnect between High-Affinity Binding and Efficient Regulation by Antifolates and Purines in the Tetrahydrofolate Riboswitch.' Chem.Biol. 21 205 216 2014 CBOLE2 UK 1074-5521 2050 ? 24388757 10.1016/j.chembiol.2013.11.012 1 'The structure of a tetrahydrofolate-sensing riboswitch reveals two ligand binding sites in a single aptamer.' Structure 19 1413 1423 2011 STRUE6 UK 0969-2126 2005 ? 21906956 10.1016/j.str.2011.06.019 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Trausch, J.J.' 1 ? primary 'Batey, R.T.' 2 ? 1 'Trausch, J.J.' 3 ? 1 'Ceres, P.' 4 ? 1 'Reyes, F.E.' 5 ? 1 'Batey, R.T.' 6 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn 'THF riboswitch' 28849.145 1 ? ? ? ? 2 non-polymer syn ADENINE 135.127 1 ? ? ? ? 3 water nat water 18.015 165 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GGAGAGUAGAUGAUUCGCGUUAAGUGUGUGUGAAUGGGAUGUCGUCACACAACGAAGCGAGAGCGCGGUGAAUCAUUGCA UCCGCUCCA ; _entity_poly.pdbx_seq_one_letter_code_can ;GGAGAGUAGAUGAUUCGCGUUAAGUGUGUGUGAAUGGGAUGUCGUCACACAACGAAGCGAGAGCGCGGUGAAUCAUUGCA UCCGCUCCA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 ADENINE ADE 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 A n 1 4 G n 1 5 A n 1 6 G n 1 7 U n 1 8 A n 1 9 G n 1 10 A n 1 11 U n 1 12 G n 1 13 A n 1 14 U n 1 15 U n 1 16 C n 1 17 G n 1 18 C n 1 19 G n 1 20 U n 1 21 U n 1 22 A n 1 23 A n 1 24 G n 1 25 U n 1 26 G n 1 27 U n 1 28 G n 1 29 U n 1 30 G n 1 31 U n 1 32 G n 1 33 A n 1 34 A n 1 35 U n 1 36 G n 1 37 G n 1 38 G n 1 39 A n 1 40 U n 1 41 G n 1 42 U n 1 43 C n 1 44 G n 1 45 U n 1 46 C n 1 47 A n 1 48 C n 1 49 A n 1 50 C n 1 51 A n 1 52 A n 1 53 C n 1 54 G n 1 55 A n 1 56 A n 1 57 G n 1 58 C n 1 59 G n 1 60 A n 1 61 G n 1 62 A n 1 63 G n 1 64 C n 1 65 G n 1 66 C n 1 67 G n 1 68 G n 1 69 U n 1 70 G n 1 71 A n 1 72 A n 1 73 U n 1 74 C n 1 75 A n 1 76 U n 1 77 U n 1 78 G n 1 79 C n 1 80 A n 1 81 U n 1 82 C n 1 83 C n 1 84 G n 1 85 C n 1 86 U n 1 87 C n 1 88 C n 1 89 A n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'T7 in vitro transcribed' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 ADE non-polymer . ADENINE ? 'C5 H5 N5' 135.127 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 G 2 2 2 G G A . n A 1 3 A 3 3 3 A A A . n A 1 4 G 4 4 4 G G A . n A 1 5 A 5 5 5 A A A . n A 1 6 G 6 6 6 G G A . n A 1 7 U 7 7 7 U U A . n A 1 8 A 8 8 8 A A A . n A 1 9 G 9 9 9 G G A . n A 1 10 A 10 10 10 A A A . n A 1 11 U 11 11 11 U U A . n A 1 12 G 12 12 12 G G A . n A 1 13 A 13 13 13 A A A . n A 1 14 U 14 14 14 U U A . n A 1 15 U 15 15 15 U U A . n A 1 16 C 16 16 16 C C A . n A 1 17 G 17 17 17 G G A . n A 1 18 C 18 18 18 C C A . n A 1 19 G 19 19 19 G G A . n A 1 20 U 20 20 20 U U A . n A 1 21 U 21 21 21 U U A . n A 1 22 A 22 22 22 A A A . n A 1 23 A 23 23 23 A A A . n A 1 24 G 24 24 24 G G A . n A 1 25 U 25 25 25 U U A . n A 1 26 G 26 26 26 G G A . n A 1 27 U 27 27 27 U U A . n A 1 28 G 28 28 28 G G A . n A 1 29 U 29 29 29 U U A . n A 1 30 G 30 30 30 G G A . n A 1 31 U 31 31 31 U U A . n A 1 32 G 32 32 32 G G A . n A 1 33 A 33 33 33 A A A . n A 1 34 A 34 34 34 A A A . n A 1 35 U 35 35 35 U U A . n A 1 36 G 36 36 36 G G A . n A 1 37 G 37 37 37 G G A . n A 1 38 G 38 38 38 G G A . n A 1 39 A 39 39 39 A A A . n A 1 40 U 40 40 40 U U A . n A 1 41 G 41 41 41 G G A . n A 1 42 U 42 42 42 U U A . n A 1 43 C 43 43 43 C C A . n A 1 44 G 44 44 44 G G A . n A 1 45 U 45 45 45 U U A . n A 1 46 C 46 46 46 C C A . n A 1 47 A 47 47 47 A A A . n A 1 48 C 48 48 48 C C A . n A 1 49 A 49 49 49 A A A . n A 1 50 C 50 50 50 C C A . n A 1 51 A 51 51 51 A A A . n A 1 52 A 52 52 52 A A A . n A 1 53 C 53 53 53 C C A . n A 1 54 G 54 54 54 G G A . n A 1 55 A 55 55 55 A A A . n A 1 56 A 56 56 56 A A A . n A 1 57 G 57 57 57 G G A . n A 1 58 C 58 58 58 C C A . n A 1 59 G 59 59 59 G G A . n A 1 60 A 60 60 60 A A A . n A 1 61 G 61 61 61 G G A . n A 1 62 A 62 62 62 A A A . n A 1 63 G 63 63 63 G G A . n A 1 64 C 64 64 64 C C A . n A 1 65 G 65 65 65 G G A . n A 1 66 C 66 66 66 C C A . n A 1 67 G 67 67 67 G G A . n A 1 68 G 68 68 68 G G A . n A 1 69 U 69 69 69 U U A . n A 1 70 G 70 70 70 G G A . n A 1 71 A 71 71 71 A A A . n A 1 72 A 72 72 72 A A A . n A 1 73 U 73 73 73 U U A . n A 1 74 C 74 74 74 C C A . n A 1 75 A 75 75 75 A A A . n A 1 76 U 76 76 76 U U A . n A 1 77 U 77 77 77 U U A . n A 1 78 G 78 78 78 G G A . n A 1 79 C 79 79 79 C C A . n A 1 80 A 80 80 80 A A A . n A 1 81 U 81 81 81 U U A . n A 1 82 C 82 82 82 C C A . n A 1 83 C 83 83 83 C C A . n A 1 84 G 84 84 84 G G A . n A 1 85 C 85 85 85 C C A . n A 1 86 U 86 86 86 U U A . n A 1 87 C 87 87 87 C C A . n A 1 88 C 88 88 88 C C A . n A 1 89 A 89 89 89 A A A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ADE 1 101 101 ADE ADE A . C 3 HOH 1 201 201 HOH HOH A . C 3 HOH 2 202 202 HOH HOH A . C 3 HOH 3 203 203 HOH HOH A . C 3 HOH 4 204 204 HOH HOH A . C 3 HOH 5 205 205 HOH HOH A . C 3 HOH 6 206 206 HOH HOH A . C 3 HOH 7 207 207 HOH HOH A . C 3 HOH 8 208 208 HOH HOH A . C 3 HOH 9 209 209 HOH HOH A . C 3 HOH 10 210 210 HOH HOH A . C 3 HOH 11 211 211 HOH HOH A . C 3 HOH 12 212 212 HOH HOH A . C 3 HOH 13 213 214 HOH HOH A . C 3 HOH 14 214 215 HOH HOH A . C 3 HOH 15 215 216 HOH HOH A . C 3 HOH 16 216 217 HOH HOH A . C 3 HOH 17 217 218 HOH HOH A . C 3 HOH 18 218 219 HOH HOH A . C 3 HOH 19 219 220 HOH HOH A . C 3 HOH 20 220 221 HOH HOH A . C 3 HOH 21 221 222 HOH HOH A . C 3 HOH 22 222 223 HOH HOH A . C 3 HOH 23 223 224 HOH HOH A . C 3 HOH 24 224 225 HOH HOH A . C 3 HOH 25 225 226 HOH HOH A . C 3 HOH 26 226 227 HOH HOH A . C 3 HOH 27 227 228 HOH HOH A . C 3 HOH 28 228 229 HOH HOH A . C 3 HOH 29 229 230 HOH HOH A . C 3 HOH 30 230 231 HOH HOH A . C 3 HOH 31 231 232 HOH HOH A . C 3 HOH 32 232 233 HOH HOH A . C 3 HOH 33 233 234 HOH HOH A . C 3 HOH 34 234 235 HOH HOH A . C 3 HOH 35 235 236 HOH HOH A . C 3 HOH 36 236 237 HOH HOH A . C 3 HOH 37 237 238 HOH HOH A . C 3 HOH 38 238 239 HOH HOH A . C 3 HOH 39 239 240 HOH HOH A . C 3 HOH 40 240 241 HOH HOH A . C 3 HOH 41 241 242 HOH HOH A . C 3 HOH 42 242 243 HOH HOH A . C 3 HOH 43 243 244 HOH HOH A . C 3 HOH 44 244 245 HOH HOH A . C 3 HOH 45 245 246 HOH HOH A . C 3 HOH 46 246 247 HOH HOH A . C 3 HOH 47 247 248 HOH HOH A . C 3 HOH 48 248 249 HOH HOH A . C 3 HOH 49 249 250 HOH HOH A . C 3 HOH 50 250 251 HOH HOH A . C 3 HOH 51 251 252 HOH HOH A . C 3 HOH 52 252 253 HOH HOH A . C 3 HOH 53 253 254 HOH HOH A . C 3 HOH 54 254 255 HOH HOH A . C 3 HOH 55 255 256 HOH HOH A . C 3 HOH 56 256 257 HOH HOH A . C 3 HOH 57 257 258 HOH HOH A . C 3 HOH 58 258 259 HOH HOH A . C 3 HOH 59 259 260 HOH HOH A . C 3 HOH 60 260 261 HOH HOH A . C 3 HOH 61 261 262 HOH HOH A . C 3 HOH 62 262 263 HOH HOH A . C 3 HOH 63 263 264 HOH HOH A . C 3 HOH 64 264 265 HOH HOH A . C 3 HOH 65 265 266 HOH HOH A . C 3 HOH 66 266 267 HOH HOH A . C 3 HOH 67 267 268 HOH HOH A . C 3 HOH 68 268 269 HOH HOH A . C 3 HOH 69 269 270 HOH HOH A . C 3 HOH 70 270 271 HOH HOH A . C 3 HOH 71 271 272 HOH HOH A . C 3 HOH 72 272 273 HOH HOH A . C 3 HOH 73 273 274 HOH HOH A . C 3 HOH 74 274 275 HOH HOH A . C 3 HOH 75 275 276 HOH HOH A . C 3 HOH 76 276 277 HOH HOH A . C 3 HOH 77 277 278 HOH HOH A . C 3 HOH 78 278 279 HOH HOH A . C 3 HOH 79 279 280 HOH HOH A . C 3 HOH 80 280 281 HOH HOH A . C 3 HOH 81 281 282 HOH HOH A . C 3 HOH 82 282 283 HOH HOH A . C 3 HOH 83 283 284 HOH HOH A . C 3 HOH 84 284 285 HOH HOH A . C 3 HOH 85 285 286 HOH HOH A . C 3 HOH 86 286 287 HOH HOH A . C 3 HOH 87 287 288 HOH HOH A . C 3 HOH 88 288 289 HOH HOH A . C 3 HOH 89 289 290 HOH HOH A . C 3 HOH 90 290 291 HOH HOH A . C 3 HOH 91 291 292 HOH HOH A . C 3 HOH 92 292 293 HOH HOH A . C 3 HOH 93 293 294 HOH HOH A . C 3 HOH 94 294 295 HOH HOH A . C 3 HOH 95 295 296 HOH HOH A . C 3 HOH 96 296 297 HOH HOH A . C 3 HOH 97 297 298 HOH HOH A . C 3 HOH 98 298 299 HOH HOH A . C 3 HOH 99 299 300 HOH HOH A . C 3 HOH 100 300 301 HOH HOH A . C 3 HOH 101 301 302 HOH HOH A . C 3 HOH 102 302 303 HOH HOH A . C 3 HOH 103 303 304 HOH HOH A . C 3 HOH 104 304 305 HOH HOH A . C 3 HOH 105 305 306 HOH HOH A . C 3 HOH 106 306 307 HOH HOH A . C 3 HOH 107 307 308 HOH HOH A . C 3 HOH 108 308 309 HOH HOH A . C 3 HOH 109 309 310 HOH HOH A . C 3 HOH 110 310 311 HOH HOH A . C 3 HOH 111 311 312 HOH HOH A . C 3 HOH 112 312 313 HOH HOH A . C 3 HOH 113 313 314 HOH HOH A . C 3 HOH 114 314 315 HOH HOH A . C 3 HOH 115 315 316 HOH HOH A . C 3 HOH 116 316 317 HOH HOH A . C 3 HOH 117 317 318 HOH HOH A . C 3 HOH 118 318 319 HOH HOH A . C 3 HOH 119 319 320 HOH HOH A . C 3 HOH 120 320 321 HOH HOH A . C 3 HOH 121 321 322 HOH HOH A . C 3 HOH 122 322 323 HOH HOH A . C 3 HOH 123 323 324 HOH HOH A . C 3 HOH 124 324 325 HOH HOH A . C 3 HOH 125 325 326 HOH HOH A . C 3 HOH 126 326 327 HOH HOH A . C 3 HOH 127 327 328 HOH HOH A . C 3 HOH 128 328 329 HOH HOH A . C 3 HOH 129 329 330 HOH HOH A . C 3 HOH 130 330 331 HOH HOH A . C 3 HOH 131 331 332 HOH HOH A . C 3 HOH 132 332 333 HOH HOH A . C 3 HOH 133 333 334 HOH HOH A . C 3 HOH 134 334 335 HOH HOH A . C 3 HOH 135 335 336 HOH HOH A . C 3 HOH 136 336 337 HOH HOH A . C 3 HOH 137 337 338 HOH HOH A . C 3 HOH 138 338 339 HOH HOH A . C 3 HOH 139 339 340 HOH HOH A . C 3 HOH 140 340 341 HOH HOH A . C 3 HOH 141 341 342 HOH HOH A . C 3 HOH 142 342 343 HOH HOH A . C 3 HOH 143 343 344 HOH HOH A . C 3 HOH 144 344 345 HOH HOH A . C 3 HOH 145 345 346 HOH HOH A . C 3 HOH 146 346 347 HOH HOH A . C 3 HOH 147 347 348 HOH HOH A . C 3 HOH 148 348 349 HOH HOH A . C 3 HOH 149 349 350 HOH HOH A . C 3 HOH 150 350 351 HOH HOH A . C 3 HOH 151 351 352 HOH HOH A . C 3 HOH 152 352 353 HOH HOH A . C 3 HOH 153 353 354 HOH HOH A . C 3 HOH 154 354 355 HOH HOH A . C 3 HOH 155 355 356 HOH HOH A . C 3 HOH 156 356 357 HOH HOH A . C 3 HOH 157 357 358 HOH HOH A . C 3 HOH 158 358 359 HOH HOH A . C 3 HOH 159 359 360 HOH HOH A . C 3 HOH 160 360 361 HOH HOH A . C 3 HOH 161 361 362 HOH HOH A . C 3 HOH 162 362 363 HOH HOH A . C 3 HOH 163 363 364 HOH HOH A . C 3 HOH 164 364 365 HOH HOH A . C 3 HOH 165 365 366 HOH HOH A . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal BOS 'data collection' . ? 1 PHASER phasing . ? 2 PHENIX refinement '(phenix.refine: 1.8_1069)' ? 3 MOSFLM 'data reduction' . ? 4 SCALA 'data scaling' . ? 5 # _cell.entry_id 4LW0 _cell.length_a 27.180 _cell.length_b 68.460 _cell.length_c 157.080 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4LW0 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # _exptl.entry_id 4LW0 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.53 _exptl_crystal.density_percent_sol 51.44 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 303 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details ;2,4-methyl-pentanediol, spermine, sodium cacodylate, sodium chloride, dithiothreitol, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 303K ; # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2013-01-19 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.1051 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 5.0.2' _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 5.0.2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.1051 # _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.entry_id 4LW0 _reflns.observed_criterion_sigma_I 3.0 _reflns.observed_criterion_sigma_F 3.0 _reflns.d_resolution_low 41.86 _reflns.d_resolution_high 1.75 _reflns.number_obs ? _reflns.number_all 26159 _reflns.percent_possible_obs 85.2 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 4.3 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.pdbx_ordinal 1 _reflns_shell.d_res_high 1.75 _reflns_shell.d_res_low 1.85 _reflns_shell.percent_possible_all 75.5 _reflns_shell.Rmerge_I_obs 0.340 _reflns_shell.pdbx_Rsym_value 0.265 _reflns_shell.meanI_over_sigI_obs 3.0 _reflns_shell.pdbx_redundancy 4.1 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? # _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.entry_id 4LW0 _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.ls_number_reflns_obs 24074 _refine.ls_number_reflns_all 26159 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.33 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 34.230 _refine.ls_d_res_high 1.889 _refine.ls_percent_reflns_obs 98.13 _refine.ls_R_factor_obs 0.2068 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.2056 _refine.ls_R_factor_R_free 0.2283 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.01 _refine.ls_number_reflns_R_free 1206 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.19 _refine.pdbx_overall_phase_error 27.60 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1913 _refine_hist.pdbx_number_atoms_ligand 10 _refine_hist.number_atoms_solvent 165 _refine_hist.number_atoms_total 2088 _refine_hist.d_res_high 1.889 _refine_hist.d_res_low 34.230 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function f_bond_d 0.004 ? ? 2153 'X-RAY DIFFRACTION' ? f_angle_d 0.965 ? ? 3355 'X-RAY DIFFRACTION' ? f_dihedral_angle_d 12.007 ? ? 1065 'X-RAY DIFFRACTION' ? f_chiral_restr 0.042 ? ? 445 'X-RAY DIFFRACTION' ? f_plane_restr 0.007 ? ? 90 'X-RAY DIFFRACTION' ? # loop_ _refine_ls_shell.pdbx_refine_id _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.number_reflns_obs 'X-RAY DIFFRACTION' . 1.8891 1.9648 2262 0.3212 89.00 0.3304 . . 121 . . . . 'X-RAY DIFFRACTION' . 1.9648 2.0542 2502 0.2730 99.00 0.2970 . . 133 . . . . 'X-RAY DIFFRACTION' . 2.0542 2.1624 2497 0.2643 99.00 0.3157 . . 130 . . . . 'X-RAY DIFFRACTION' . 2.1624 2.2979 2550 0.2674 99.00 0.2630 . . 134 . . . . 'X-RAY DIFFRACTION' . 2.2979 2.4753 2555 0.2646 100.00 0.3100 . . 135 . . . . 'X-RAY DIFFRACTION' . 2.4753 2.7243 2584 0.2654 100.00 0.2748 . . 135 . . . . 'X-RAY DIFFRACTION' . 2.7243 3.1183 2557 0.2391 100.00 0.2544 . . 136 . . . . 'X-RAY DIFFRACTION' . 3.1183 3.9278 2618 0.1760 99.00 0.2162 . . 137 . . . . 'X-RAY DIFFRACTION' . 3.9278 34.2356 2743 0.1524 99.00 0.1643 . . 145 . . . . # _database_PDB_matrix.entry_id 4LW0 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 4LW0 _struct.title 'Structure of the THF riboswitch bound to adenine' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4LW0 _struct_keywords.pdbx_keywords RNA _struct_keywords.text ;Aptamers, Nucleotide, Bacillus subtilis, Bacterial Proteins, Base Sequence, Binding Sites, Calorimetry, Folic Acid, Gene Expression Regulation, Bacterial, Guanine, Leucovorin, Ligands, Magnesium, Molecular Sequence Data, Nucleic Acid Conformation, Point Mutation, Protein Binding, Protein Structure, Secondary, RNA, Riboswitch, S-Adenosylmethionine, Streptococcus mutans, Terminator Regions, Genetic, Tetrahydrofolates, Thermodynamics, Transcription, three-way junction, pseudoknot, regulation, ncRNA, Adenine binding, mRNA ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 4LW0 _struct_ref.pdbx_db_accession 4LW0 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ;GGAGAGUAGAUGAUUCGCGUUAAGUGUGUGUGAAUGGGAUGUCGUCACACAACGAAGCGAGAGCGCGGUGAAUCAUUGCA UCCGCUCCA ; _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4LW0 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 89 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 4LW0 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 89 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 89 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 88 N3 ? ? A G 1 A C 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 88 O2 ? ? A G 1 A C 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 88 N4 ? ? A G 1 A C 88 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 87 N3 ? ? A G 2 A C 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 87 O2 ? ? A G 2 A C 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 87 N4 ? ? A G 2 A C 87 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A A 3 N1 ? ? ? 1_555 A U 86 N3 ? ? A A 3 A U 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A A 3 N6 ? ? ? 1_555 A U 86 O4 ? ? A A 3 A U 86 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 4 N1 ? ? ? 1_555 A C 85 N3 ? ? A G 4 A C 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 4 N2 ? ? ? 1_555 A C 85 O2 ? ? A G 4 A C 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A G 4 O6 ? ? ? 1_555 A C 85 N4 ? ? A G 4 A C 85 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A A 5 N1 ? ? ? 1_555 A G 84 N1 ? ? A A 5 A G 84 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog13 hydrog ? ? A A 5 N6 ? ? ? 1_555 A G 84 O6 ? ? A A 5 A G 84 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog14 hydrog ? ? A G 6 N2 ? ? ? 1_555 A G 37 O6 ? ? A G 6 A G 37 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog15 hydrog ? ? A A 8 N3 ? ? ? 1_555 A G 44 N2 ? ? A A 8 A G 44 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog16 hydrog ? ? A A 8 N7 ? ? ? 1_555 A G 78 N2 ? ? A A 8 A G 78 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog17 hydrog ? ? A G 9 N1 ? ? ? 1_555 A U 77 O2 ? ? A G 9 A U 77 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog18 hydrog ? ? A G 9 O6 ? ? ? 1_555 A U 77 N3 ? ? A G 9 A U 77 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog19 hydrog ? ? A A 10 N1 ? ? ? 1_555 A U 76 N3 ? ? A A 10 A U 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A A 10 N6 ? ? ? 1_555 A U 76 O4 ? ? A A 10 A U 76 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A U 11 N3 ? ? ? 1_555 A A 75 N1 ? ? A U 11 A A 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A U 11 O4 ? ? ? 1_555 A A 75 N6 ? ? A U 11 A A 75 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A G 12 N1 ? ? ? 1_555 A C 74 N3 ? ? A G 12 A C 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A G 12 N2 ? ? ? 1_555 A C 74 O2 ? ? A G 12 A C 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A G 12 O6 ? ? ? 1_555 A C 74 N4 ? ? A G 12 A C 74 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A A 13 N1 ? ? ? 1_555 A U 73 N3 ? ? A A 13 A U 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A A 13 N6 ? ? ? 1_555 A U 73 O4 ? ? A A 13 A U 73 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A U 14 N3 ? ? ? 1_555 A A 72 N1 ? ? A U 14 A A 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A U 14 O4 ? ? ? 1_555 A A 72 N6 ? ? A U 14 A A 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A U 15 N3 ? ? ? 1_555 A A 71 N1 ? ? A U 15 A A 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A U 15 O4 ? ? ? 1_555 A A 71 N6 ? ? A U 15 A A 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A C 16 N3 ? ? ? 1_555 A G 70 N1 ? ? A C 16 A G 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A C 16 N4 ? ? ? 1_555 A G 70 O6 ? ? A C 16 A G 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A C 16 O2 ? ? ? 1_555 A G 70 N2 ? ? A C 16 A G 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A G 17 N1 ? ? ? 1_555 A U 69 O2 ? ? A G 17 A U 69 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog36 hydrog ? ? A G 17 O6 ? ? ? 1_555 A U 69 N3 ? ? A G 17 A U 69 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog37 hydrog ? ? A C 18 N3 ? ? ? 1_555 A G 67 N1 ? ? A C 18 A G 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A C 18 N4 ? ? ? 1_555 A G 67 O6 ? ? A C 18 A G 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A C 18 O2 ? ? ? 1_555 A G 67 N2 ? ? A C 18 A G 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A G 19 N2 ? ? ? 1_555 A A 22 N1 ? ? A G 19 A A 22 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog41 hydrog ? ? A G 19 N1 ? ? ? 1_555 A C 66 N3 ? ? A G 19 A C 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A G 19 N2 ? ? ? 1_555 A C 66 O2 ? ? A G 19 A C 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A G 19 O6 ? ? ? 1_555 A C 66 N4 ? ? A G 19 A C 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A U 20 N3 ? ? ? 1_555 A G 65 O6 ? ? A U 20 A G 65 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog45 hydrog ? ? A U 20 O2 ? ? ? 1_555 A G 65 N1 ? ? A U 20 A G 65 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog46 hydrog ? ? A A 23 N6 ? ? ? 1_555 A A 55 N1 ? ? A A 23 A A 55 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog47 hydrog ? ? A A 23 N7 ? ? ? 1_555 A A 55 N6 ? ? A A 23 A A 55 1_555 ? ? ? ? ? ? TYPE_5_PAIR ? ? ? hydrog48 hydrog ? ? A A 23 N1 ? ? ? 1_555 A G 67 N2 ? ? A A 23 A G 67 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog49 hydrog ? ? A G 24 O6 ? ? ? 1_555 A G 54 N2 ? ? A G 24 A G 54 1_555 ? ? ? ? ? ? 'G-G MISPAIR' ? ? ? hydrog50 hydrog ? ? A G 26 N1 ? ? ? 1_555 A A 52 N1 ? ? A G 26 A A 52 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog51 hydrog ? ? A G 26 O6 ? ? ? 1_555 A A 52 N6 ? ? A G 26 A A 52 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog52 hydrog ? ? A G 26 N2 ? ? ? 1_555 A C 53 O2 ? ? A G 26 A C 53 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog53 hydrog ? ? A U 27 N3 ? ? ? 1_555 A A 51 N1 ? ? A U 27 A A 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A U 27 O4 ? ? ? 1_555 A A 51 N6 ? ? A U 27 A A 51 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A G 28 N1 ? ? ? 1_555 A C 50 N3 ? ? A G 28 A C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A G 28 N2 ? ? ? 1_555 A C 50 O2 ? ? A G 28 A C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A G 28 O6 ? ? ? 1_555 A C 50 N4 ? ? A G 28 A C 50 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A U 29 N3 ? ? ? 1_555 A A 49 N1 ? ? A U 29 A A 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A U 29 O4 ? ? ? 1_555 A A 49 N6 ? ? A U 29 A A 49 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A G 30 N1 ? ? ? 1_555 A C 48 N3 ? ? A G 30 A C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A G 30 N2 ? ? ? 1_555 A C 48 O2 ? ? A G 30 A C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A G 30 O6 ? ? ? 1_555 A C 48 N4 ? ? A G 30 A C 48 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A U 31 N3 ? ? ? 1_555 A A 47 N1 ? ? A U 31 A A 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A U 31 O4 ? ? ? 1_555 A A 47 N6 ? ? A U 31 A A 47 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A G 32 N1 ? ? ? 1_555 A C 46 N3 ? ? A G 32 A C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A G 32 N2 ? ? ? 1_555 A C 46 O2 ? ? A G 32 A C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A G 32 O6 ? ? ? 1_555 A C 46 N4 ? ? A G 32 A C 46 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A A 33 N1 ? ? ? 1_555 A U 45 N3 ? ? A A 33 A U 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? A A 33 N6 ? ? ? 1_555 A U 45 O4 ? ? A A 33 A U 45 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? A A 34 N1 ? ? ? 1_555 A G 44 N1 ? ? A A 34 A G 44 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog71 hydrog ? ? A A 34 N6 ? ? ? 1_555 A G 44 O6 ? ? A A 34 A G 44 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog72 hydrog ? ? A U 35 N3 ? ? ? 1_555 A U 42 O4 ? ? A U 35 A U 42 1_555 ? ? ? ? ? ? 'U-U MISPAIR' ? ? ? hydrog73 hydrog ? ? A G 37 N1 ? ? ? 1_555 A C 83 N3 ? ? A G 37 A C 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? A G 37 N2 ? ? ? 1_555 A C 83 O2 ? ? A G 37 A C 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? A G 37 O6 ? ? ? 1_555 A C 83 N4 ? ? A G 37 A C 83 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? A G 38 N1 ? ? ? 1_555 A C 82 N3 ? ? A G 38 A C 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? A G 38 N2 ? ? ? 1_555 A C 82 O2 ? ? A G 38 A C 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog78 hydrog ? ? A G 38 O6 ? ? ? 1_555 A C 82 N4 ? ? A G 38 A C 82 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? A A 39 N1 ? ? ? 1_555 A U 81 N3 ? ? A A 39 A U 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? A A 39 N6 ? ? ? 1_555 A U 81 O4 ? ? A A 39 A U 81 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? A U 40 N3 ? ? ? 1_555 A A 80 N1 ? ? A U 40 A A 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? A U 40 O4 ? ? ? 1_555 A A 80 N6 ? ? A U 40 A A 80 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? A G 41 N1 ? ? ? 1_555 A C 79 N3 ? ? A G 41 A C 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog84 hydrog ? ? A G 41 N2 ? ? ? 1_555 A C 79 O2 ? ? A G 41 A C 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog85 hydrog ? ? A G 41 O6 ? ? ? 1_555 A C 79 N4 ? ? A G 41 A C 79 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog86 hydrog ? ? A A 56 N3 ? ? ? 1_555 A G 65 N2 ? ? A A 56 A G 65 1_555 ? ? ? ? ? ? 'A-G MISPAIR' ? ? ? hydrog87 hydrog ? ? A G 57 N1 ? ? ? 1_555 A C 64 N3 ? ? A G 57 A C 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog88 hydrog ? ? A G 57 N2 ? ? ? 1_555 A C 64 O2 ? ? A G 57 A C 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog89 hydrog ? ? A G 57 O6 ? ? ? 1_555 A C 64 N4 ? ? A G 57 A C 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog90 hydrog ? ? A C 58 N3 ? ? ? 1_555 A G 63 N1 ? ? A C 58 A G 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog91 hydrog ? ? A C 58 N4 ? ? ? 1_555 A G 63 O6 ? ? A C 58 A G 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog92 hydrog ? ? A C 58 O2 ? ? ? 1_555 A G 63 N2 ? ? A C 58 A G 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog93 hydrog ? ? A G 59 N2 ? ? ? 1_555 A A 62 N7 ? ? A G 59 A A 62 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id ADE _struct_site.pdbx_auth_seq_id 101 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 9 _struct_site.details 'BINDING SITE FOR RESIDUE ADE A 101' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 9 U A 7 ? U A 7 . ? 1_555 ? 2 AC1 9 A A 8 ? A A 8 . ? 1_555 ? 3 AC1 9 U A 35 ? U A 35 . ? 1_555 ? 4 AC1 9 U A 42 ? U A 42 . ? 1_555 ? 5 AC1 9 G A 44 ? G A 44 . ? 1_555 ? 6 AC1 9 G A 78 ? G A 78 . ? 1_555 ? 7 AC1 9 C A 79 ? C A 79 . ? 1_555 ? 8 AC1 9 HOH C . ? HOH A 243 . ? 1_555 ? 9 AC1 9 HOH C . ? HOH A 269 . ? 1_555 ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 O A HOH 201 ? ? O A HOH 333 ? ? 2.13 2 1 O A HOH 299 ? ? O A HOH 363 ? ? 2.13 3 1 O A HOH 209 ? ? O A HOH 332 ? ? 2.17 # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 "O4'" _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 C _pdbx_validate_rmsd_angle.auth_seq_id_1 79 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 "C1'" _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 C _pdbx_validate_rmsd_angle.auth_seq_id_2 79 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 N1 _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 C _pdbx_validate_rmsd_angle.auth_seq_id_3 79 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 113.36 _pdbx_validate_rmsd_angle.angle_target_value 108.50 _pdbx_validate_rmsd_angle.angle_deviation 4.86 _pdbx_validate_rmsd_angle.angle_standard_deviation 0.70 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 ADE N9 N Y N 38 ADE C8 C Y N 39 ADE N7 N Y N 40 ADE C5 C Y N 41 ADE C6 C Y N 42 ADE N6 N N N 43 ADE N1 N Y N 44 ADE C2 C Y N 45 ADE N3 N Y N 46 ADE C4 C Y N 47 ADE HN9 H N N 48 ADE H8 H N N 49 ADE HN61 H N N 50 ADE HN62 H N N 51 ADE H2 H N N 52 C OP3 O N N 53 C P P N N 54 C OP1 O N N 55 C OP2 O N N 56 C "O5'" O N N 57 C "C5'" C N N 58 C "C4'" C N R 59 C "O4'" O N N 60 C "C3'" C N S 61 C "O3'" O N N 62 C "C2'" C N R 63 C "O2'" O N N 64 C "C1'" C N R 65 C N1 N N N 66 C C2 C N N 67 C O2 O N N 68 C N3 N N N 69 C C4 C N N 70 C N4 N N N 71 C C5 C N N 72 C C6 C N N 73 C HOP3 H N N 74 C HOP2 H N N 75 C "H5'" H N N 76 C "H5''" H N N 77 C "H4'" H N N 78 C "H3'" H N N 79 C "HO3'" H N N 80 C "H2'" H N N 81 C "HO2'" H N N 82 C "H1'" H N N 83 C H41 H N N 84 C H42 H N N 85 C H5 H N N 86 C H6 H N N 87 G OP3 O N N 88 G P P N N 89 G OP1 O N N 90 G OP2 O N N 91 G "O5'" O N N 92 G "C5'" C N N 93 G "C4'" C N R 94 G "O4'" O N N 95 G "C3'" C N S 96 G "O3'" O N N 97 G "C2'" C N R 98 G "O2'" O N N 99 G "C1'" C N R 100 G N9 N Y N 101 G C8 C Y N 102 G N7 N Y N 103 G C5 C Y N 104 G C6 C N N 105 G O6 O N N 106 G N1 N N N 107 G C2 C N N 108 G N2 N N N 109 G N3 N N N 110 G C4 C Y N 111 G HOP3 H N N 112 G HOP2 H N N 113 G "H5'" H N N 114 G "H5''" H N N 115 G "H4'" H N N 116 G "H3'" H N N 117 G "HO3'" H N N 118 G "H2'" H N N 119 G "HO2'" H N N 120 G "H1'" H N N 121 G H8 H N N 122 G H1 H N N 123 G H21 H N N 124 G H22 H N N 125 HOH O O N N 126 HOH H1 H N N 127 HOH H2 H N N 128 U OP3 O N N 129 U P P N N 130 U OP1 O N N 131 U OP2 O N N 132 U "O5'" O N N 133 U "C5'" C N N 134 U "C4'" C N R 135 U "O4'" O N N 136 U "C3'" C N S 137 U "O3'" O N N 138 U "C2'" C N R 139 U "O2'" O N N 140 U "C1'" C N R 141 U N1 N N N 142 U C2 C N N 143 U O2 O N N 144 U N3 N N N 145 U C4 C N N 146 U O4 O N N 147 U C5 C N N 148 U C6 C N N 149 U HOP3 H N N 150 U HOP2 H N N 151 U "H5'" H N N 152 U "H5''" H N N 153 U "H4'" H N N 154 U "H3'" H N N 155 U "HO3'" H N N 156 U "H2'" H N N 157 U "HO2'" H N N 158 U "H1'" H N N 159 U H3 H N N 160 U H5 H N N 161 U H6 H N N 162 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 ADE N9 C8 sing Y N 40 ADE N9 C4 sing Y N 41 ADE N9 HN9 sing N N 42 ADE C8 N7 doub Y N 43 ADE C8 H8 sing N N 44 ADE N7 C5 sing Y N 45 ADE C5 C6 sing Y N 46 ADE C5 C4 doub Y N 47 ADE C6 N6 sing N N 48 ADE C6 N1 doub Y N 49 ADE N6 HN61 sing N N 50 ADE N6 HN62 sing N N 51 ADE N1 C2 sing Y N 52 ADE C2 N3 doub Y N 53 ADE C2 H2 sing N N 54 ADE N3 C4 sing Y N 55 C OP3 P sing N N 56 C OP3 HOP3 sing N N 57 C P OP1 doub N N 58 C P OP2 sing N N 59 C P "O5'" sing N N 60 C OP2 HOP2 sing N N 61 C "O5'" "C5'" sing N N 62 C "C5'" "C4'" sing N N 63 C "C5'" "H5'" sing N N 64 C "C5'" "H5''" sing N N 65 C "C4'" "O4'" sing N N 66 C "C4'" "C3'" sing N N 67 C "C4'" "H4'" sing N N 68 C "O4'" "C1'" sing N N 69 C "C3'" "O3'" sing N N 70 C "C3'" "C2'" sing N N 71 C "C3'" "H3'" sing N N 72 C "O3'" "HO3'" sing N N 73 C "C2'" "O2'" sing N N 74 C "C2'" "C1'" sing N N 75 C "C2'" "H2'" sing N N 76 C "O2'" "HO2'" sing N N 77 C "C1'" N1 sing N N 78 C "C1'" "H1'" sing N N 79 C N1 C2 sing N N 80 C N1 C6 sing N N 81 C C2 O2 doub N N 82 C C2 N3 sing N N 83 C N3 C4 doub N N 84 C C4 N4 sing N N 85 C C4 C5 sing N N 86 C N4 H41 sing N N 87 C N4 H42 sing N N 88 C C5 C6 doub N N 89 C C5 H5 sing N N 90 C C6 H6 sing N N 91 G OP3 P sing N N 92 G OP3 HOP3 sing N N 93 G P OP1 doub N N 94 G P OP2 sing N N 95 G P "O5'" sing N N 96 G OP2 HOP2 sing N N 97 G "O5'" "C5'" sing N N 98 G "C5'" "C4'" sing N N 99 G "C5'" "H5'" sing N N 100 G "C5'" "H5''" sing N N 101 G "C4'" "O4'" sing N N 102 G "C4'" "C3'" sing N N 103 G "C4'" "H4'" sing N N 104 G "O4'" "C1'" sing N N 105 G "C3'" "O3'" sing N N 106 G "C3'" "C2'" sing N N 107 G "C3'" "H3'" sing N N 108 G "O3'" "HO3'" sing N N 109 G "C2'" "O2'" sing N N 110 G "C2'" "C1'" sing N N 111 G "C2'" "H2'" sing N N 112 G "O2'" "HO2'" sing N N 113 G "C1'" N9 sing N N 114 G "C1'" "H1'" sing N N 115 G N9 C8 sing Y N 116 G N9 C4 sing Y N 117 G C8 N7 doub Y N 118 G C8 H8 sing N N 119 G N7 C5 sing Y N 120 G C5 C6 sing N N 121 G C5 C4 doub Y N 122 G C6 O6 doub N N 123 G C6 N1 sing N N 124 G N1 C2 sing N N 125 G N1 H1 sing N N 126 G C2 N2 sing N N 127 G C2 N3 doub N N 128 G N2 H21 sing N N 129 G N2 H22 sing N N 130 G N3 C4 sing N N 131 HOH O H1 sing N N 132 HOH O H2 sing N N 133 U OP3 P sing N N 134 U OP3 HOP3 sing N N 135 U P OP1 doub N N 136 U P OP2 sing N N 137 U P "O5'" sing N N 138 U OP2 HOP2 sing N N 139 U "O5'" "C5'" sing N N 140 U "C5'" "C4'" sing N N 141 U "C5'" "H5'" sing N N 142 U "C5'" "H5''" sing N N 143 U "C4'" "O4'" sing N N 144 U "C4'" "C3'" sing N N 145 U "C4'" "H4'" sing N N 146 U "O4'" "C1'" sing N N 147 U "C3'" "O3'" sing N N 148 U "C3'" "C2'" sing N N 149 U "C3'" "H3'" sing N N 150 U "O3'" "HO3'" sing N N 151 U "C2'" "O2'" sing N N 152 U "C2'" "C1'" sing N N 153 U "C2'" "H2'" sing N N 154 U "O2'" "HO2'" sing N N 155 U "C1'" N1 sing N N 156 U "C1'" "H1'" sing N N 157 U N1 C2 sing N N 158 U N1 C6 sing N N 159 U C2 O2 doub N N 160 U C2 N3 sing N N 161 U N3 C4 sing N N 162 U N3 H3 sing N N 163 U C4 O4 doub N N 164 U C4 C5 sing N N 165 U C5 C6 doub N N 166 U C5 H5 sing N N 167 U C6 H6 sing N N 168 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 4LW0 'double helix' 4LW0 'a-form double helix' 4LW0 'bulge loop' 4LW0 'mismatched base pair' 4LW0 'triple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 88 1_555 -0.646 -0.304 -0.107 -3.732 -5.168 -4.396 1 A_G1:C88_A A 1 ? A 88 ? 19 1 1 A G 2 1_555 A C 87 1_555 0.018 -0.391 -0.147 -7.747 -11.388 -1.704 2 A_G2:C87_A A 2 ? A 87 ? 19 1 1 A A 3 1_555 A U 86 1_555 0.135 -0.017 -0.130 -6.282 -14.879 -0.053 3 A_A3:U86_A A 3 ? A 86 ? 20 1 1 A G 4 1_555 A C 85 1_555 -0.223 -0.086 0.084 -12.454 -20.768 0.726 4 A_G4:C85_A A 4 ? A 85 ? 19 1 1 A A 5 1_555 A G 84 1_555 0.218 1.493 -0.263 -19.511 -10.657 -17.376 5 A_A5:G84_A A 5 ? A 84 ? 8 1 1 A G 37 1_555 A C 83 1_555 -0.368 -0.161 -0.487 -8.789 -7.469 1.248 6 A_G37:C83_A A 37 ? A 83 ? 19 1 1 A G 38 1_555 A C 82 1_555 -0.327 -0.132 -0.263 -12.131 -9.901 1.195 7 A_G38:C82_A A 38 ? A 82 ? 19 1 1 A A 39 1_555 A U 81 1_555 0.070 -0.119 -0.011 -6.874 -4.360 -1.950 8 A_A39:U81_A A 39 ? A 81 ? 20 1 1 A U 40 1_555 A A 80 1_555 0.326 -0.075 0.139 -12.137 -18.262 5.848 9 A_U40:A80_A A 40 ? A 80 ? 20 1 1 A G 41 1_555 A C 79 1_555 -0.266 0.016 -0.532 -40.086 -9.715 3.133 10 A_G41:C79_A A 41 ? A 79 ? 19 1 1 A U 42 1_555 A U 35 1_555 -3.594 -0.508 -0.294 -2.325 -8.834 -85.453 11 A_U42:U35_A A 42 ? A 35 ? ? 4 1 A G 44 1_555 A A 34 1_555 -0.045 1.500 -0.472 3.854 -14.997 -20.231 12 A_G44:A34_A A 44 ? A 34 ? 8 1 1 A U 45 1_555 A A 33 1_555 0.053 -0.079 0.166 6.002 -9.130 -1.643 13 A_U45:A33_A A 45 ? A 33 ? 20 1 1 A C 46 1_555 A G 32 1_555 0.110 -0.233 0.288 2.832 -10.390 0.139 14 A_C46:G32_A A 46 ? A 32 ? 19 1 1 A A 47 1_555 A U 31 1_555 0.100 -0.151 0.167 6.726 -10.886 -0.453 15 A_A47:U31_A A 47 ? A 31 ? 20 1 1 A C 48 1_555 A G 30 1_555 0.218 -0.178 0.029 11.809 -14.313 0.352 16 A_C48:G30_A A 48 ? A 30 ? 19 1 1 A A 49 1_555 A U 29 1_555 0.297 -0.235 0.070 7.581 -12.401 -0.349 17 A_A49:U29_A A 49 ? A 29 ? 20 1 1 A C 50 1_555 A G 28 1_555 0.300 -0.200 -0.017 7.147 -15.369 3.466 18 A_C50:G28_A A 50 ? A 28 ? 19 1 1 A A 51 1_555 A U 27 1_555 0.128 -0.111 0.033 -3.179 -9.330 1.286 19 A_A51:U27_A A 51 ? A 27 ? 20 1 1 A A 52 1_555 A G 26 1_555 0.006 1.302 -0.847 -10.365 -15.488 -10.486 20 A_A52:G26_A A 52 ? A 26 ? 8 1 1 A C 18 1_555 A G 67 1_555 0.121 -0.134 0.002 2.057 -11.874 -1.141 21 A_C18:G67_A A 18 ? A 67 ? 19 1 1 A A 23 1_555 A A 55 1_555 -4.092 1.444 -0.220 -18.008 -6.269 -112.743 22 A_A23:A55_A A 23 ? A 55 ? 5 4 1 A G 24 1_555 A G 54 1_555 -4.318 0.662 0.667 11.824 -7.011 -59.462 23 A_G24:G54_A A 24 ? A 54 ? ? 1 1 A G 19 1_555 A C 66 1_555 -0.062 -0.128 0.166 -5.682 -24.528 0.548 24 A_G19:C66_A A 19 ? A 66 ? 19 1 1 A U 20 1_555 A G 65 1_555 2.191 -0.487 0.214 -7.008 -12.169 -10.914 25 A_U20:G65_A A 20 ? A 65 ? 28 1 1 A G 57 1_555 A C 64 1_555 -0.275 -0.095 -0.012 -8.784 -7.857 1.135 26 A_G57:C64_A A 57 ? A 64 ? 19 1 1 A C 58 1_555 A G 63 1_555 0.282 -0.131 0.057 3.129 -3.398 0.257 27 A_C58:G63_A A 58 ? A 63 ? 19 1 1 A G 59 1_555 A A 62 1_555 8.078 -4.884 0.414 13.475 -2.211 -53.474 28 A_G59:A62_A A 59 ? A 62 ? ? ? 1 A A 8 1_555 A G 78 1_555 -7.192 -5.343 0.258 -13.224 4.092 -18.993 29 A_A8:G78_A A 8 ? A 78 ? ? 10 1 A G 9 1_555 A U 77 1_555 -2.507 -0.627 -0.163 0.999 -2.414 2.010 30 A_G9:U77_A A 9 ? A 77 ? 28 1 1 A A 10 1_555 A U 76 1_555 -0.080 -0.097 -0.101 -0.883 -9.407 1.655 31 A_A10:U76_A A 10 ? A 76 ? 20 1 1 A U 11 1_555 A A 75 1_555 0.122 -0.198 0.182 -1.384 -10.649 -0.535 32 A_U11:A75_A A 11 ? A 75 ? 20 1 1 A G 12 1_555 A C 74 1_555 0.207 -0.306 0.181 -2.371 -10.663 -2.221 33 A_G12:C74_A A 12 ? A 74 ? 19 1 1 A A 13 1_555 A U 73 1_555 0.009 -0.172 0.287 -2.088 -8.863 1.041 34 A_A13:U73_A A 13 ? A 73 ? 20 1 1 A U 14 1_555 A A 72 1_555 -0.169 0.003 0.294 -14.522 -16.355 0.066 35 A_U14:A72_A A 14 ? A 72 ? 20 1 1 A U 15 1_555 A A 71 1_555 -0.253 -0.100 0.371 -6.758 -13.869 -0.389 36 A_U15:A71_A A 15 ? A 71 ? 20 1 1 A C 16 1_555 A G 70 1_555 0.345 -0.134 0.190 2.762 -7.517 -1.312 37 A_C16:G70_A A 16 ? A 70 ? 19 1 1 A G 17 1_555 A U 69 1_555 -2.164 -0.603 -0.061 1.725 -11.422 -1.435 38 A_G17:U69_A A 17 ? A 69 ? 28 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 88 1_555 A G 2 1_555 A C 87 1_555 -0.320 -1.959 3.333 -0.127 5.482 38.476 -3.598 0.466 3.037 8.268 0.192 38.850 1 AA_G1G2:C87C88_AA A 1 ? A 88 ? A 2 ? A 87 ? 1 A G 2 1_555 A C 87 1_555 A A 3 1_555 A U 86 1_555 0.273 -1.467 3.221 2.874 3.535 31.371 -3.315 0.011 3.054 6.494 -5.281 31.692 2 AA_G2A3:U86C87_AA A 2 ? A 87 ? A 3 ? A 86 ? 1 A A 3 1_555 A U 86 1_555 A G 4 1_555 A C 85 1_555 0.517 -1.948 3.332 3.830 8.557 30.536 -5.021 -0.279 2.742 15.786 -7.067 31.910 3 AA_A3G4:C85U86_AA A 3 ? A 86 ? A 4 ? A 85 ? 1 A G 4 1_555 A C 85 1_555 A A 5 1_555 A G 84 1_555 -1.061 -1.539 3.250 4.858 3.878 38.042 -2.789 2.181 2.933 5.901 -7.392 38.528 4 AA_G4A5:G84C85_AA A 4 ? A 85 ? A 5 ? A 84 ? 1 A A 5 1_555 A G 84 1_555 A G 37 1_555 A C 83 1_555 -1.945 -3.362 3.435 13.426 4.713 48.518 -4.258 3.174 2.531 5.597 -15.945 50.440 5 AA_A5G37:C83G84_AA A 5 ? A 84 ? A 37 ? A 83 ? 1 A G 37 1_555 A C 83 1_555 A G 38 1_555 A C 82 1_555 -0.834 -1.723 3.298 -3.791 7.771 36.326 -3.689 0.818 2.949 12.252 5.978 37.307 6 AA_G37G38:C82C83_AA A 37 ? A 83 ? A 38 ? A 82 ? 1 A G 38 1_555 A C 82 1_555 A A 39 1_555 A U 81 1_555 -0.797 -1.993 3.074 -3.265 9.974 25.521 -6.241 1.000 2.234 21.457 7.024 27.562 7 AA_G38A39:U81C82_AA A 38 ? A 82 ? A 39 ? A 81 ? 1 A A 39 1_555 A U 81 1_555 A U 40 1_555 A A 80 1_555 1.246 -1.634 3.364 3.416 14.723 34.593 -4.351 -1.507 2.590 23.424 -5.435 37.658 8 AA_A39U40:A80U81_AA A 39 ? A 81 ? A 40 ? A 80 ? 1 A U 40 1_555 A A 80 1_555 A G 41 1_555 A C 79 1_555 1.669 -0.769 3.749 16.950 13.219 40.956 -2.370 -0.356 3.731 17.516 -22.460 46.038 9 AA_U40G41:C79A80_AA A 40 ? A 80 ? A 41 ? A 79 ? 1 A G 41 1_555 A C 79 1_555 A U 42 1_555 A U 35 1_555 -2.538 1.351 3.026 -16.628 5.590 50.437 1.127 1.701 3.753 6.344 18.869 53.212 10 AA_G41U42:U35C79_AA A 41 ? A 79 ? A 42 ? A 35 ? 1 A U 42 1_555 A U 35 1_555 A G 44 1_555 A A 34 1_555 1.450 -2.367 3.095 0.111 2.199 59.285 -2.495 -1.460 3.016 2.222 -0.112 59.322 11 AA_U42G44:A34U35_AA A 42 ? A 35 ? A 44 ? A 34 ? 1 A G 44 1_555 A A 34 1_555 A U 45 1_555 A A 33 1_555 0.977 -2.017 3.164 -6.488 -1.205 32.934 -3.304 -2.703 2.993 -2.100 11.303 33.570 12 AA_G44U45:A33A34_AA A 44 ? A 34 ? A 45 ? A 33 ? 1 A U 45 1_555 A A 33 1_555 A C 46 1_555 A G 32 1_555 0.424 -1.920 3.273 -0.372 0.986 34.422 -3.395 -0.773 3.214 1.665 0.629 34.438 13 AA_U45C46:G32A33_AA A 45 ? A 33 ? A 46 ? A 32 ? 1 A C 46 1_555 A G 32 1_555 A A 47 1_555 A U 31 1_555 -0.952 -1.660 3.019 -0.073 5.201 30.517 -3.998 1.771 2.708 9.792 0.138 30.946 14 AA_C46A47:U31G32_AA A 46 ? A 32 ? A 47 ? A 31 ? 1 A A 47 1_555 A U 31 1_555 A C 48 1_555 A G 30 1_555 0.172 -1.356 3.166 -0.046 4.701 31.872 -3.231 -0.318 2.941 8.503 0.084 32.208 15 AA_A47C48:G30U31_AA A 47 ? A 31 ? A 48 ? A 30 ? 1 A C 48 1_555 A G 30 1_555 A A 49 1_555 A U 29 1_555 -0.585 -1.515 3.297 -0.988 10.180 33.164 -4.020 0.839 2.742 17.329 1.681 34.663 16 AA_C48A49:U29G30_AA A 48 ? A 30 ? A 49 ? A 29 ? 1 A A 49 1_555 A U 29 1_555 A C 50 1_555 A G 28 1_555 0.445 -1.229 3.243 1.799 8.529 31.111 -3.645 -0.498 2.836 15.523 -3.274 32.280 17 AA_A49C50:G28U29_AA A 49 ? A 29 ? A 50 ? A 28 ? 1 A C 50 1_555 A G 28 1_555 A A 51 1_555 A U 27 1_555 0.156 -1.945 3.379 0.199 13.060 32.569 -5.049 -0.232 2.444 22.205 -0.338 35.024 18 AA_C50A51:U27G28_AA A 50 ? A 28 ? A 51 ? A 27 ? 1 A A 51 1_555 A U 27 1_555 A A 52 1_555 A G 26 1_555 -0.852 -2.039 3.400 8.091 8.760 31.573 -4.841 2.694 2.475 15.428 -14.250 33.696 19 AA_A51A52:G26U27_AA A 51 ? A 27 ? A 52 ? A 26 ? 1 A C 18 1_555 A G 67 1_555 A A 23 1_555 A A 55 1_555 -0.651 1.541 6.804 39.645 -137.124 38.364 3.478 1.113 0.786 -80.387 -23.241 144.878 20 AA_C18A23:A55G67_AA A 18 ? A 67 ? A 23 ? A 55 ? 1 A A 23 1_555 A A 55 1_555 A G 24 1_555 A G 54 1_555 3.258 -1.949 2.783 -7.164 -2.356 35.751 -2.859 -5.967 2.230 -3.786 11.512 36.512 21 AA_A23G24:G54A55_AA A 23 ? A 55 ? A 24 ? A 54 ? 1 A G 19 1_555 A C 66 1_555 A U 20 1_555 A G 65 1_555 -0.324 -1.094 3.151 1.467 4.202 45.896 -1.739 0.533 3.034 5.373 -1.877 46.100 22 AA_G19U20:G65C66_AA A 19 ? A 66 ? A 20 ? A 65 ? 1 A U 20 1_555 A G 65 1_555 A G 57 1_555 A C 64 1_555 -1.820 -2.274 3.082 3.156 6.245 31.574 -5.025 3.745 2.411 11.303 -5.712 32.321 23 AA_U20G57:C64G65_AA A 20 ? A 65 ? A 57 ? A 64 ? 1 A G 57 1_555 A C 64 1_555 A C 58 1_555 A G 63 1_555 0.916 -2.304 3.058 1.660 -2.337 26.812 -4.360 -1.552 3.292 -5.021 -3.566 26.962 24 AA_G57C58:G63C64_AA A 57 ? A 64 ? A 58 ? A 63 ? 1 A C 58 1_555 A G 63 1_555 A G 59 1_555 A A 62 1_555 -4.882 -2.000 3.014 -1.144 2.201 54.562 -2.302 5.257 3.031 2.400 1.247 54.614 25 AA_C58G59:A62G63_AA A 58 ? A 63 ? A 59 ? A 62 ? 1 A A 8 1_555 A G 78 1_555 A G 9 1_555 A U 77 1_555 2.233 -1.446 2.872 0.797 6.069 46.329 -2.257 -2.760 2.708 7.675 -1.008 46.710 26 AA_A8G9:U77G78_AA A 8 ? A 78 ? A 9 ? A 77 ? 1 A G 9 1_555 A U 77 1_555 A A 10 1_555 A U 76 1_555 -0.723 -1.777 3.271 -3.040 4.772 39.252 -3.165 0.719 3.088 7.059 4.496 39.642 27 AA_G9A10:U76U77_AA A 9 ? A 77 ? A 10 ? A 76 ? 1 A A 10 1_555 A U 76 1_555 A U 11 1_555 A A 75 1_555 -0.255 -1.364 3.260 -0.803 6.978 33.143 -3.417 0.314 2.926 12.065 1.389 33.859 28 AA_A10U11:A75U76_AA A 10 ? A 76 ? A 11 ? A 75 ? 1 A U 11 1_555 A A 75 1_555 A G 12 1_555 A C 74 1_555 0.187 -1.583 3.096 1.492 12.125 33.173 -4.168 -0.117 2.395 20.396 -2.510 35.292 29 AA_U11G12:C74A75_AA A 11 ? A 75 ? A 12 ? A 74 ? 1 A G 12 1_555 A C 74 1_555 A A 13 1_555 A U 73 1_555 -0.232 -1.399 3.107 -2.284 6.930 33.421 -3.376 0.066 2.779 11.875 3.914 34.187 30 AA_G12A13:U73C74_AA A 12 ? A 74 ? A 13 ? A 73 ? 1 A A 13 1_555 A U 73 1_555 A U 14 1_555 A A 72 1_555 -0.122 -1.350 3.549 0.620 11.468 30.763 -4.394 0.324 2.873 20.732 -1.120 32.789 31 AA_A13U14:A72U73_AA A 13 ? A 73 ? A 14 ? A 72 ? 1 A U 14 1_555 A A 72 1_555 A U 15 1_555 A A 71 1_555 0.238 -1.199 2.995 0.110 4.653 32.675 -2.815 -0.402 2.803 8.218 -0.194 32.996 32 AA_U14U15:A71A72_AA A 14 ? A 72 ? A 15 ? A 71 ? 1 A U 15 1_555 A A 71 1_555 A C 16 1_555 A G 70 1_555 -0.087 -1.020 3.058 0.875 1.799 34.733 -1.960 0.270 3.000 3.011 -1.464 34.789 33 AA_U15C16:G70A71_AA A 15 ? A 71 ? A 16 ? A 70 ? 1 A C 16 1_555 A G 70 1_555 A G 17 1_555 A U 69 1_555 1.697 -2.356 3.131 2.854 7.190 20.350 -8.708 -3.518 2.381 19.466 -7.727 21.756 34 AA_C16G17:U69G70_AA A 16 ? A 70 ? A 17 ? A 69 ? # _atom_sites.entry_id 4LW0 _atom_sites.fract_transf_matrix[1][1] 0.036792 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014607 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006366 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P # loop_