data_4LWR # _entry.id 4LWR # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.285 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4LWR RCSB RCSB081182 WWPDB D_1000081182 # _pdbx_database_PDB_obs_spr.id OBSLTE _pdbx_database_PDB_obs_spr.date 2017-09-13 _pdbx_database_PDB_obs_spr.pdb_id 5Y9A _pdbx_database_PDB_obs_spr.replace_pdb_id 4LWR _pdbx_database_PDB_obs_spr.details ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 4JWK 'Crystal structure of the complex of peptidyl-tRNA hydrolase from Acinetobacter baumannii with cytidine at 1.87 A resolution' unspecified PDB 4LWQ . unspecified # _pdbx_database_status.status_code OBS _pdbx_database_status.entry_id 4LWR _pdbx_database_status.recvd_initial_deposition_date 2013-07-28 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_sf OBS _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Kaushik, S.' 1 'Singh, N.' 2 'Sinha, M.' 3 'Kaur, P.' 4 'Sharma, S.' 5 'Singh, T.P.' 6 # _citation.id primary _citation.title ;Crystal structure of the ternary complex of peptidyl tRNA hydrolase from Acinetobacter baumannii with cytosine arabinoside and phosphate ion at 1.1A resolution ; _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Kaushik, S.' 1 primary 'Singh, N.' 2 primary 'Sinha, M.' 3 primary 'Kaur, P.' 4 primary 'Sharma, S.' 5 primary 'Singh, T.P.' 6 # _cell.entry_id 4LWR _cell.length_a 34.000 _cell.length_b 66.160 _cell.length_c 76.150 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4LWR _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Peptidyl-tRNA hydrolase' 21250.232 1 3.1.1.29 ? ? ? 2 non-polymer syn CYTARABINE 243.217 1 ? ? ? ? 3 non-polymer syn 'PHOSPHATE ION' 94.971 1 ? ? ? ? 4 non-polymer syn GLYCEROL 92.094 1 ? ? ? ? 5 water nat water 18.015 242 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name PTH # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSHMSNISLIVGLGNPGSEYAQTRHNAGFWFVEQLADKYGITLKNDPKFHGISGRGNIEGHDVRLLLPMTYMNRSGQSVV PFSKFYQIAPEAILIAHDELDMNPGVIRLKTGGGHGGHNGLRDIVPHIGPNFHRLRIGIGHPGSKERVSGHVLGKAPSNE QSLMDGAIDHALSKVKLLVQGQVPQAMNQINAYKPA ; _entity_poly.pdbx_seq_one_letter_code_can ;GSHMSNISLIVGLGNPGSEYAQTRHNAGFWFVEQLADKYGITLKNDPKFHGISGRGNIEGHDVRLLLPMTYMNRSGQSVV PFSKFYQIAPEAILIAHDELDMNPGVIRLKTGGGHGGHNGLRDIVPHIGPNFHRLRIGIGHPGSKERVSGHVLGKAPSNE QSLMDGAIDHALSKVKLLVQGQVPQAMNQINAYKPA ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 HIS n 1 4 MET n 1 5 SER n 1 6 ASN n 1 7 ILE n 1 8 SER n 1 9 LEU n 1 10 ILE n 1 11 VAL n 1 12 GLY n 1 13 LEU n 1 14 GLY n 1 15 ASN n 1 16 PRO n 1 17 GLY n 1 18 SER n 1 19 GLU n 1 20 TYR n 1 21 ALA n 1 22 GLN n 1 23 THR n 1 24 ARG n 1 25 HIS n 1 26 ASN n 1 27 ALA n 1 28 GLY n 1 29 PHE n 1 30 TRP n 1 31 PHE n 1 32 VAL n 1 33 GLU n 1 34 GLN n 1 35 LEU n 1 36 ALA n 1 37 ASP n 1 38 LYS n 1 39 TYR n 1 40 GLY n 1 41 ILE n 1 42 THR n 1 43 LEU n 1 44 LYS n 1 45 ASN n 1 46 ASP n 1 47 PRO n 1 48 LYS n 1 49 PHE n 1 50 HIS n 1 51 GLY n 1 52 ILE n 1 53 SER n 1 54 GLY n 1 55 ARG n 1 56 GLY n 1 57 ASN n 1 58 ILE n 1 59 GLU n 1 60 GLY n 1 61 HIS n 1 62 ASP n 1 63 VAL n 1 64 ARG n 1 65 LEU n 1 66 LEU n 1 67 LEU n 1 68 PRO n 1 69 MET n 1 70 THR n 1 71 TYR n 1 72 MET n 1 73 ASN n 1 74 ARG n 1 75 SER n 1 76 GLY n 1 77 GLN n 1 78 SER n 1 79 VAL n 1 80 VAL n 1 81 PRO n 1 82 PHE n 1 83 SER n 1 84 LYS n 1 85 PHE n 1 86 TYR n 1 87 GLN n 1 88 ILE n 1 89 ALA n 1 90 PRO n 1 91 GLU n 1 92 ALA n 1 93 ILE n 1 94 LEU n 1 95 ILE n 1 96 ALA n 1 97 HIS n 1 98 ASP n 1 99 GLU n 1 100 LEU n 1 101 ASP n 1 102 MET n 1 103 ASN n 1 104 PRO n 1 105 GLY n 1 106 VAL n 1 107 ILE n 1 108 ARG n 1 109 LEU n 1 110 LYS n 1 111 THR n 1 112 GLY n 1 113 GLY n 1 114 GLY n 1 115 HIS n 1 116 GLY n 1 117 GLY n 1 118 HIS n 1 119 ASN n 1 120 GLY n 1 121 LEU n 1 122 ARG n 1 123 ASP n 1 124 ILE n 1 125 VAL n 1 126 PRO n 1 127 HIS n 1 128 ILE n 1 129 GLY n 1 130 PRO n 1 131 ASN n 1 132 PHE n 1 133 HIS n 1 134 ARG n 1 135 LEU n 1 136 ARG n 1 137 ILE n 1 138 GLY n 1 139 ILE n 1 140 GLY n 1 141 HIS n 1 142 PRO n 1 143 GLY n 1 144 SER n 1 145 LYS n 1 146 GLU n 1 147 ARG n 1 148 VAL n 1 149 SER n 1 150 GLY n 1 151 HIS n 1 152 VAL n 1 153 LEU n 1 154 GLY n 1 155 LYS n 1 156 ALA n 1 157 PRO n 1 158 SER n 1 159 ASN n 1 160 GLU n 1 161 GLN n 1 162 SER n 1 163 LEU n 1 164 MET n 1 165 ASP n 1 166 GLY n 1 167 ALA n 1 168 ILE n 1 169 ASP n 1 170 HIS n 1 171 ALA n 1 172 LEU n 1 173 SER n 1 174 LYS n 1 175 VAL n 1 176 LYS n 1 177 LEU n 1 178 LEU n 1 179 VAL n 1 180 GLN n 1 181 GLY n 1 182 GLN n 1 183 VAL n 1 184 PRO n 1 185 GLN n 1 186 ALA n 1 187 MET n 1 188 ASN n 1 189 GLN n 1 190 ILE n 1 191 ASN n 1 192 ALA n 1 193 TYR n 1 194 LYS n 1 195 PRO n 1 196 ALA n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene pth _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain 'ATCC 19606' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Acinetobacter baumannii' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 575584 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code D0C9L6_ACIBA _struct_ref.pdbx_db_accession D0C9L6 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MSNISLIVGLGNPGSEYAQTRHNAGFWFVEQLADKYGITLKNDPKFHGISGRGNIEGHDVRLLLPMTYMNRSGQSVVPFS KFYQIAPEAILIAHDELDMNPGVIRLKTGGGHGGHNGLRDIVPHIGPNFHRLRIGIGHPGSKERVSGHVLGKAPSNEQSL MDGAIDHALSKVKLLVQGQVPQAMNQINAYKPA ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4LWR _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 196 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession D0C9L6 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 193 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 193 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4LWR GLY A 1 ? UNP D0C9L6 ? ? 'EXPRESSION TAG' -2 1 1 4LWR SER A 2 ? UNP D0C9L6 ? ? 'EXPRESSION TAG' -1 2 1 4LWR HIS A 3 ? UNP D0C9L6 ? ? 'EXPRESSION TAG' 0 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 AR3 non-polymer . CYTARABINE '1-BETA-D-ARABINOFURANOSYLCYTOSINE; ARA-C' 'C9 H13 N3 O5' 243.217 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 GOL non-polymer . GLYCEROL 'GLYCERIN; PROPANE-1,2,3-TRIOL' 'C3 H8 O3' 92.094 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PO4 non-polymer . 'PHOSPHATE ION' ? 'O4 P -3' 94.971 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4LWR _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.02 _exptl_crystal.density_percent_sol 38.96 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details 'HEPES, PEG 400, PEG 1500, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 77 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 2013-06-23 _diffrn_detector.details Mirror # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator graphite _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE BM14' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline BM14 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97 # _reflns.entry_id 4LWR _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 16.85 _reflns.d_resolution_high 1.1 _reflns.number_obs 64713 _reflns.number_all 68258 _reflns.percent_possible_obs 96.9 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.1 _reflns_shell.d_res_low 1.16 _reflns_shell.percent_possible_all 95.5 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_rejects ? _reflns_shell.pdbx_netI_over_sigmaI_obs ? _reflns_shell.number_possible ? _reflns_shell.Rmerge_F_all ? _reflns_shell.Rmerge_F_obs ? _reflns_shell.Rmerge_I_all ? _reflns_shell.meanI_over_sigI_all ? _reflns_shell.pdbx_Rrim_I_all ? _reflns_shell.pdbx_Rpim_I_all ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4LWR _refine.ls_number_reflns_obs 64713 _refine.ls_number_reflns_all 68258 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 16.65 _refine.ls_d_res_high 1.10 _refine.ls_percent_reflns_obs 96.65 _refine.ls_R_factor_obs 0.15431 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.15315 _refine.ls_R_factor_R_free 0.17642 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.1 _refine.ls_number_reflns_R_free 3454 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.970 _refine.correlation_coeff_Fo_to_Fc_free 0.958 _refine.B_iso_mean 12.594 _refine.aniso_B[1][1] -0.15 _refine.aniso_B[2][2] 0.02 _refine.aniso_B[3][3] 0.13 _refine.aniso_B[1][2] -0.00 _refine.aniso_B[1][3] -0.00 _refine.aniso_B[2][3] -0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 4JWK _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.033 _refine.pdbx_overall_ESU_R_Free 0.033 _refine.overall_SU_ML 0.018 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 0.816 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1496 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 28 _refine_hist.number_atoms_solvent 242 _refine_hist.number_atoms_total 1766 _refine_hist.d_res_high 1.10 _refine_hist.d_res_low 16.65 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 0.005 0.019 ? 1559 ? 'X-RAY DIFFRACTION' r_bond_other_d 0.001 0.020 ? 1495 ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1.344 1.969 ? 2107 ? 'X-RAY DIFFRACTION' r_angle_other_deg 0.735 3.000 ? 3437 ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 5.378 5.000 ? 195 ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 33.838 23.913 ? 69 ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 11.827 15.000 ? 254 ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 10.791 15.000 ? 9 ? 'X-RAY DIFFRACTION' r_chiral_restr 0.071 0.200 ? 223 ? 'X-RAY DIFFRACTION' r_gen_planes_refined 0.005 0.021 ? 1787 ? 'X-RAY DIFFRACTION' r_gen_planes_other 0.001 0.020 ? 371 ? 'X-RAY DIFFRACTION' r_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcbond_it 0.725 0.970 ? 783 ? 'X-RAY DIFFRACTION' r_mcbond_other 0.723 0.969 ? 782 ? 'X-RAY DIFFRACTION' r_mcangle_it 0.987 1.464 ? 977 ? 'X-RAY DIFFRACTION' r_mcangle_other 0.987 1.465 ? 978 ? 'X-RAY DIFFRACTION' r_scbond_it 0.973 1.240 ? 776 ? 'X-RAY DIFFRACTION' r_scbond_other 0.968 1.240 ? 776 ? 'X-RAY DIFFRACTION' r_scangle_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_scangle_other 1.101 1.761 ? 1131 ? 'X-RAY DIFFRACTION' r_long_range_B_refined 2.429 10.259 ? 1934 ? 'X-RAY DIFFRACTION' r_long_range_B_other 2.429 10.266 ? 1935 ? 'X-RAY DIFFRACTION' r_rigid_bond_restr 1.523 3.000 ? 3054 ? 'X-RAY DIFFRACTION' r_sphericity_free 21.328 5.000 ? 48 ? 'X-RAY DIFFRACTION' r_sphericity_bonded 6.105 5.000 ? 3215 ? 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.100 _refine_ls_shell.d_res_low 1.129 _refine_ls_shell.number_reflns_R_work 4618 _refine_ls_shell.R_factor_R_work 0.242 _refine_ls_shell.percent_reflns_obs 94.89 _refine_ls_shell.R_factor_R_free 0.223 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 263 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? # _struct.entry_id 4LWR _struct.title ;Crystal structure of the ternary complex of peptidyl tRNA hydrolase from Acinetobacter baumannii with cytosine arabinoside and phosphate ion at 1.1A resolution ; _struct.pdbx_descriptor 'Peptidyl-tRNA hydrolase (E.C.3.1.1.29)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4LWR _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'Protein synthesis, HYDROLASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 23 ? HIS A 25 ? THR A 20 HIS A 22 5 ? 3 HELX_P HELX_P2 2 ASN A 26 ? GLY A 40 ? ASN A 23 GLY A 37 1 ? 15 HELX_P HELX_P3 3 PRO A 47 ? PHE A 49 ? PRO A 44 PHE A 46 5 ? 3 HELX_P HELX_P4 4 TYR A 71 ? ARG A 74 ? TYR A 68 ARG A 71 5 ? 4 HELX_P HELX_P5 5 SER A 75 ? TYR A 86 ? SER A 72 TYR A 83 1 ? 12 HELX_P HELX_P6 6 ALA A 89 ? GLU A 91 ? ALA A 86 GLU A 88 5 ? 3 HELX_P HELX_P7 7 HIS A 118 ? ASP A 123 ? HIS A 115 ASP A 120 1 ? 6 HELX_P HELX_P8 8 ILE A 124 ? GLY A 129 ? ILE A 121 GLY A 126 1 ? 6 HELX_P HELX_P9 9 ARG A 147 ? LEU A 153 ? ARG A 144 LEU A 150 1 ? 7 HELX_P HELX_P10 10 PRO A 157 ? SER A 173 ? PRO A 154 SER A 170 1 ? 17 HELX_P HELX_P11 11 LYS A 174 ? GLN A 180 ? LYS A 171 GLN A 177 1 ? 7 HELX_P HELX_P12 12 GLN A 182 ? ALA A 192 ? GLN A 179 ALA A 189 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 7 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? parallel A 6 7 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS A 44 ? ASP A 46 ? LYS A 41 ASP A 43 A 2 GLY A 51 ? ILE A 58 ? GLY A 48 ILE A 55 A 3 HIS A 61 ? PRO A 68 ? HIS A 58 PRO A 65 A 4 LEU A 9 ? GLY A 12 ? LEU A 6 GLY A 9 A 5 ILE A 93 ? GLU A 99 ? ILE A 90 GLU A 96 A 6 HIS A 133 ? GLY A 138 ? HIS A 130 GLY A 135 A 7 ILE A 107 ? THR A 111 ? ILE A 104 THR A 108 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N LYS A 44 ? N LYS A 41 O SER A 53 ? O SER A 50 A 2 3 N ILE A 52 ? N ILE A 49 O LEU A 67 ? O LEU A 64 A 3 4 O ARG A 64 ? O ARG A 61 N ILE A 10 ? N ILE A 7 A 4 5 N VAL A 11 ? N VAL A 8 O ALA A 96 ? O ALA A 93 A 5 6 N HIS A 97 ? N HIS A 94 O ILE A 137 ? O ILE A 134 A 6 7 O ARG A 136 ? O ARG A 133 N ARG A 108 ? N ARG A 105 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 13 'BINDING SITE FOR RESIDUE AR3 A 201' AC2 Software ? ? ? ? 10 'BINDING SITE FOR RESIDUE PO4 A 202' AC3 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE GOL A 203' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 13 ALA A 21 ? ALA A 18 . ? 1_555 ? 2 AC1 13 GLN A 22 ? GLN A 19 . ? 1_555 ? 3 AC1 13 TRP A 30 ? TRP A 27 . ? 1_555 ? 4 AC1 13 LYS A 155 ? LYS A 152 . ? 1_555 ? 5 AC1 13 GLN A 161 ? GLN A 158 . ? 1_555 ? 6 AC1 13 ASP A 165 ? ASP A 162 . ? 1_555 ? 7 AC1 13 HOH E . ? HOH A 338 . ? 1_555 ? 8 AC1 13 HOH E . ? HOH A 358 . ? 1_555 ? 9 AC1 13 HOH E . ? HOH A 363 . ? 1_555 ? 10 AC1 13 HOH E . ? HOH A 368 . ? 1_555 ? 11 AC1 13 HOH E . ? HOH A 384 . ? 1_555 ? 12 AC1 13 HOH E . ? HOH A 491 . ? 1_555 ? 13 AC1 13 HOH E . ? HOH A 542 . ? 1_555 ? 14 AC2 10 HIS A 25 ? HIS A 22 . ? 1_555 ? 15 AC2 10 MET A 72 ? MET A 69 . ? 1_555 ? 16 AC2 10 ASN A 73 ? ASN A 70 . ? 1_555 ? 17 AC2 10 ASN A 119 ? ASN A 116 . ? 1_555 ? 18 AC2 10 HOH E . ? HOH A 421 . ? 1_555 ? 19 AC2 10 HOH E . ? HOH A 422 . ? 1_555 ? 20 AC2 10 HOH E . ? HOH A 424 . ? 1_555 ? 21 AC2 10 HOH E . ? HOH A 432 . ? 1_555 ? 22 AC2 10 HOH E . ? HOH A 466 . ? 1_555 ? 23 AC2 10 HOH E . ? HOH A 485 . ? 1_555 ? 24 AC3 6 GLY A 17 ? GLY A 14 . ? 1_555 ? 25 AC3 6 PHE A 29 ? PHE A 26 . ? 1_555 ? 26 AC3 6 GLU A 33 ? GLU A 30 . ? 1_555 ? 27 AC3 6 HOH E . ? HOH A 305 . ? 1_555 ? 28 AC3 6 HOH E . ? HOH A 351 . ? 1_555 ? 29 AC3 6 HOH E . ? HOH A 363 . ? 1_555 ? # _database_PDB_matrix.entry_id 4LWR _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4LWR _atom_sites.fract_transf_matrix[1][1] 0.029412 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015115 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.013132 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -2 -2 GLY GLY A . n A 1 2 SER 2 -1 -1 SER SER A . n A 1 3 HIS 3 0 0 HIS HIS A . n A 1 4 MET 4 1 1 MET MET A . n A 1 5 SER 5 2 2 SER SER A . n A 1 6 ASN 6 3 3 ASN ASN A . n A 1 7 ILE 7 4 4 ILE ILE A . n A 1 8 SER 8 5 5 SER SER A . n A 1 9 LEU 9 6 6 LEU LEU A . n A 1 10 ILE 10 7 7 ILE ILE A . n A 1 11 VAL 11 8 8 VAL VAL A . n A 1 12 GLY 12 9 9 GLY GLY A . n A 1 13 LEU 13 10 10 LEU LEU A . n A 1 14 GLY 14 11 11 GLY GLY A . n A 1 15 ASN 15 12 12 ASN ASN A . n A 1 16 PRO 16 13 13 PRO PRO A . n A 1 17 GLY 17 14 14 GLY GLY A . n A 1 18 SER 18 15 15 SER SER A . n A 1 19 GLU 19 16 16 GLU GLU A . n A 1 20 TYR 20 17 17 TYR TYR A . n A 1 21 ALA 21 18 18 ALA ALA A . n A 1 22 GLN 22 19 19 GLN GLN A . n A 1 23 THR 23 20 20 THR THR A . n A 1 24 ARG 24 21 21 ARG ARG A . n A 1 25 HIS 25 22 22 HIS HIS A . n A 1 26 ASN 26 23 23 ASN ASN A . n A 1 27 ALA 27 24 24 ALA ALA A . n A 1 28 GLY 28 25 25 GLY GLY A . n A 1 29 PHE 29 26 26 PHE PHE A . n A 1 30 TRP 30 27 27 TRP TRP A . n A 1 31 PHE 31 28 28 PHE PHE A . n A 1 32 VAL 32 29 29 VAL VAL A . n A 1 33 GLU 33 30 30 GLU GLU A . n A 1 34 GLN 34 31 31 GLN GLN A . n A 1 35 LEU 35 32 32 LEU LEU A . n A 1 36 ALA 36 33 33 ALA ALA A . n A 1 37 ASP 37 34 34 ASP ASP A . n A 1 38 LYS 38 35 35 LYS LYS A . n A 1 39 TYR 39 36 36 TYR TYR A . n A 1 40 GLY 40 37 37 GLY GLY A . n A 1 41 ILE 41 38 38 ILE ILE A . n A 1 42 THR 42 39 39 THR THR A . n A 1 43 LEU 43 40 40 LEU LEU A . n A 1 44 LYS 44 41 41 LYS LYS A . n A 1 45 ASN 45 42 42 ASN ASN A . n A 1 46 ASP 46 43 43 ASP ASP A . n A 1 47 PRO 47 44 44 PRO PRO A . n A 1 48 LYS 48 45 45 LYS LYS A . n A 1 49 PHE 49 46 46 PHE PHE A . n A 1 50 HIS 50 47 47 HIS HIS A . n A 1 51 GLY 51 48 48 GLY GLY A . n A 1 52 ILE 52 49 49 ILE ILE A . n A 1 53 SER 53 50 50 SER SER A . n A 1 54 GLY 54 51 51 GLY GLY A . n A 1 55 ARG 55 52 52 ARG ARG A . n A 1 56 GLY 56 53 53 GLY GLY A . n A 1 57 ASN 57 54 54 ASN ASN A . n A 1 58 ILE 58 55 55 ILE ILE A . n A 1 59 GLU 59 56 56 GLU GLU A . n A 1 60 GLY 60 57 57 GLY GLY A . n A 1 61 HIS 61 58 58 HIS HIS A . n A 1 62 ASP 62 59 59 ASP ASP A . n A 1 63 VAL 63 60 60 VAL VAL A . n A 1 64 ARG 64 61 61 ARG ARG A . n A 1 65 LEU 65 62 62 LEU LEU A . n A 1 66 LEU 66 63 63 LEU LEU A . n A 1 67 LEU 67 64 64 LEU LEU A . n A 1 68 PRO 68 65 65 PRO PRO A . n A 1 69 MET 69 66 66 MET MET A . n A 1 70 THR 70 67 67 THR THR A . n A 1 71 TYR 71 68 68 TYR TYR A . n A 1 72 MET 72 69 69 MET MET A . n A 1 73 ASN 73 70 70 ASN ASN A . n A 1 74 ARG 74 71 71 ARG ARG A . n A 1 75 SER 75 72 72 SER SER A . n A 1 76 GLY 76 73 73 GLY GLY A . n A 1 77 GLN 77 74 74 GLN GLN A . n A 1 78 SER 78 75 75 SER SER A . n A 1 79 VAL 79 76 76 VAL VAL A . n A 1 80 VAL 80 77 77 VAL VAL A . n A 1 81 PRO 81 78 78 PRO PRO A . n A 1 82 PHE 82 79 79 PHE PHE A . n A 1 83 SER 83 80 80 SER SER A . n A 1 84 LYS 84 81 81 LYS LYS A . n A 1 85 PHE 85 82 82 PHE PHE A . n A 1 86 TYR 86 83 83 TYR TYR A . n A 1 87 GLN 87 84 84 GLN GLN A . n A 1 88 ILE 88 85 85 ILE ILE A . n A 1 89 ALA 89 86 86 ALA ALA A . n A 1 90 PRO 90 87 87 PRO PRO A . n A 1 91 GLU 91 88 88 GLU GLU A . n A 1 92 ALA 92 89 89 ALA ALA A . n A 1 93 ILE 93 90 90 ILE ILE A . n A 1 94 LEU 94 91 91 LEU LEU A . n A 1 95 ILE 95 92 92 ILE ILE A . n A 1 96 ALA 96 93 93 ALA ALA A . n A 1 97 HIS 97 94 94 HIS HIS A . n A 1 98 ASP 98 95 95 ASP ASP A . n A 1 99 GLU 99 96 96 GLU GLU A . n A 1 100 LEU 100 97 97 LEU LEU A . n A 1 101 ASP 101 98 98 ASP ASP A . n A 1 102 MET 102 99 99 MET MET A . n A 1 103 ASN 103 100 100 ASN ASN A . n A 1 104 PRO 104 101 101 PRO PRO A . n A 1 105 GLY 105 102 102 GLY GLY A . n A 1 106 VAL 106 103 103 VAL VAL A . n A 1 107 ILE 107 104 104 ILE ILE A . n A 1 108 ARG 108 105 105 ARG ARG A . n A 1 109 LEU 109 106 106 LEU LEU A . n A 1 110 LYS 110 107 107 LYS LYS A . n A 1 111 THR 111 108 108 THR THR A . n A 1 112 GLY 112 109 109 GLY GLY A . n A 1 113 GLY 113 110 110 GLY GLY A . n A 1 114 GLY 114 111 111 GLY GLY A . n A 1 115 HIS 115 112 112 HIS HIS A . n A 1 116 GLY 116 113 113 GLY GLY A . n A 1 117 GLY 117 114 114 GLY GLY A . n A 1 118 HIS 118 115 115 HIS HIS A . n A 1 119 ASN 119 116 116 ASN ASN A . n A 1 120 GLY 120 117 117 GLY GLY A . n A 1 121 LEU 121 118 118 LEU LEU A . n A 1 122 ARG 122 119 119 ARG ARG A . n A 1 123 ASP 123 120 120 ASP ASP A . n A 1 124 ILE 124 121 121 ILE ILE A . n A 1 125 VAL 125 122 122 VAL VAL A . n A 1 126 PRO 126 123 123 PRO PRO A . n A 1 127 HIS 127 124 124 HIS HIS A . n A 1 128 ILE 128 125 125 ILE ILE A . n A 1 129 GLY 129 126 126 GLY GLY A . n A 1 130 PRO 130 127 127 PRO PRO A . n A 1 131 ASN 131 128 128 ASN ASN A . n A 1 132 PHE 132 129 129 PHE PHE A . n A 1 133 HIS 133 130 130 HIS HIS A . n A 1 134 ARG 134 131 131 ARG ARG A . n A 1 135 LEU 135 132 132 LEU LEU A . n A 1 136 ARG 136 133 133 ARG ARG A . n A 1 137 ILE 137 134 134 ILE ILE A . n A 1 138 GLY 138 135 135 GLY GLY A . n A 1 139 ILE 139 136 136 ILE ILE A . n A 1 140 GLY 140 137 137 GLY GLY A . n A 1 141 HIS 141 138 138 HIS HIS A . n A 1 142 PRO 142 139 139 PRO PRO A . n A 1 143 GLY 143 140 140 GLY GLY A . n A 1 144 SER 144 141 141 SER SER A . n A 1 145 LYS 145 142 142 LYS LYS A . n A 1 146 GLU 146 143 143 GLU GLU A . n A 1 147 ARG 147 144 144 ARG ARG A . n A 1 148 VAL 148 145 145 VAL VAL A . n A 1 149 SER 149 146 146 SER SER A . n A 1 150 GLY 150 147 147 GLY GLY A . n A 1 151 HIS 151 148 148 HIS HIS A . n A 1 152 VAL 152 149 149 VAL VAL A . n A 1 153 LEU 153 150 150 LEU LEU A . n A 1 154 GLY 154 151 151 GLY GLY A . n A 1 155 LYS 155 152 152 LYS LYS A . n A 1 156 ALA 156 153 153 ALA ALA A . n A 1 157 PRO 157 154 154 PRO PRO A . n A 1 158 SER 158 155 155 SER SER A . n A 1 159 ASN 159 156 156 ASN ASN A . n A 1 160 GLU 160 157 157 GLU GLU A . n A 1 161 GLN 161 158 158 GLN GLN A . n A 1 162 SER 162 159 159 SER SER A . n A 1 163 LEU 163 160 160 LEU LEU A . n A 1 164 MET 164 161 161 MET MET A . n A 1 165 ASP 165 162 162 ASP ASP A . n A 1 166 GLY 166 163 163 GLY GLY A . n A 1 167 ALA 167 164 164 ALA ALA A . n A 1 168 ILE 168 165 165 ILE ILE A . n A 1 169 ASP 169 166 166 ASP ASP A . n A 1 170 HIS 170 167 167 HIS HIS A . n A 1 171 ALA 171 168 168 ALA ALA A . n A 1 172 LEU 172 169 169 LEU LEU A . n A 1 173 SER 173 170 170 SER SER A . n A 1 174 LYS 174 171 171 LYS LYS A . n A 1 175 VAL 175 172 172 VAL VAL A . n A 1 176 LYS 176 173 173 LYS LYS A . n A 1 177 LEU 177 174 174 LEU LEU A . n A 1 178 LEU 178 175 175 LEU LEU A . n A 1 179 VAL 179 176 176 VAL VAL A . n A 1 180 GLN 180 177 177 GLN GLN A . n A 1 181 GLY 181 178 178 GLY GLY A . n A 1 182 GLN 182 179 179 GLN GLN A . n A 1 183 VAL 183 180 180 VAL VAL A . n A 1 184 PRO 184 181 181 PRO PRO A . n A 1 185 GLN 185 182 182 GLN GLN A . n A 1 186 ALA 186 183 183 ALA ALA A . n A 1 187 MET 187 184 184 MET MET A . n A 1 188 ASN 188 185 185 ASN ASN A . n A 1 189 GLN 189 186 186 GLN GLN A . n A 1 190 ILE 190 187 187 ILE ILE A . n A 1 191 ASN 191 188 188 ASN ASN A . n A 1 192 ALA 192 189 189 ALA ALA A . n A 1 193 TYR 193 190 190 TYR TYR A . n A 1 194 LYS 194 191 191 LYS LYS A . n A 1 195 PRO 195 192 192 PRO PRO A . n A 1 196 ALA 196 193 193 ALA ALA A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 AR3 1 201 1 AR3 AR3 A . C 3 PO4 1 202 1 PO4 PO4 A . D 4 GOL 1 203 1 GOL GOL A . E 5 HOH 1 301 1 HOH HOH A . E 5 HOH 2 302 2 HOH HOH A . E 5 HOH 3 303 3 HOH HOH A . E 5 HOH 4 304 4 HOH HOH A . E 5 HOH 5 305 5 HOH HOH A . E 5 HOH 6 306 6 HOH HOH A . E 5 HOH 7 307 7 HOH HOH A . E 5 HOH 8 308 8 HOH HOH A . E 5 HOH 9 309 9 HOH HOH A . E 5 HOH 10 310 10 HOH HOH A . E 5 HOH 11 311 11 HOH HOH A . E 5 HOH 12 312 12 HOH HOH A . E 5 HOH 13 313 13 HOH HOH A . E 5 HOH 14 314 14 HOH HOH A . E 5 HOH 15 315 15 HOH HOH A . E 5 HOH 16 316 16 HOH HOH A . E 5 HOH 17 317 17 HOH HOH A . E 5 HOH 18 318 18 HOH HOH A . E 5 HOH 19 319 19 HOH HOH A . E 5 HOH 20 320 20 HOH HOH A . E 5 HOH 21 321 21 HOH HOH A . E 5 HOH 22 322 22 HOH HOH A . E 5 HOH 23 323 23 HOH HOH A . E 5 HOH 24 324 24 HOH HOH A . E 5 HOH 25 325 25 HOH HOH A . E 5 HOH 26 326 26 HOH HOH A . E 5 HOH 27 327 27 HOH HOH A . E 5 HOH 28 328 28 HOH HOH A . E 5 HOH 29 329 29 HOH HOH A . E 5 HOH 30 330 30 HOH HOH A . E 5 HOH 31 331 31 HOH HOH A . E 5 HOH 32 332 32 HOH HOH A . E 5 HOH 33 333 33 HOH HOH A . E 5 HOH 34 334 34 HOH HOH A . E 5 HOH 35 335 35 HOH HOH A . E 5 HOH 36 336 36 HOH HOH A . E 5 HOH 37 337 37 HOH HOH A . E 5 HOH 38 338 38 HOH HOH A . E 5 HOH 39 339 39 HOH HOH A . E 5 HOH 40 340 40 HOH HOH A . E 5 HOH 41 341 41 HOH HOH A . E 5 HOH 42 342 42 HOH HOH A . E 5 HOH 43 343 43 HOH HOH A . E 5 HOH 44 344 44 HOH HOH A . E 5 HOH 45 345 45 HOH HOH A . E 5 HOH 46 346 46 HOH HOH A . E 5 HOH 47 347 47 HOH HOH A . E 5 HOH 48 348 48 HOH HOH A . E 5 HOH 49 349 49 HOH HOH A . E 5 HOH 50 350 50 HOH HOH A . E 5 HOH 51 351 51 HOH HOH A . E 5 HOH 52 352 52 HOH HOH A . E 5 HOH 53 353 53 HOH HOH A . E 5 HOH 54 354 54 HOH HOH A . E 5 HOH 55 355 55 HOH HOH A . E 5 HOH 56 356 56 HOH HOH A . E 5 HOH 57 357 57 HOH HOH A . E 5 HOH 58 358 58 HOH HOH A . E 5 HOH 59 359 59 HOH HOH A . E 5 HOH 60 360 60 HOH HOH A . E 5 HOH 61 361 61 HOH HOH A . E 5 HOH 62 362 62 HOH HOH A . E 5 HOH 63 363 63 HOH HOH A . E 5 HOH 64 364 64 HOH HOH A . E 5 HOH 65 365 65 HOH HOH A . E 5 HOH 66 366 66 HOH HOH A . E 5 HOH 67 367 67 HOH HOH A . E 5 HOH 68 368 68 HOH HOH A . E 5 HOH 69 369 69 HOH HOH A . E 5 HOH 70 370 70 HOH HOH A . E 5 HOH 71 371 71 HOH HOH A . E 5 HOH 72 372 72 HOH HOH A . E 5 HOH 73 373 73 HOH HOH A . E 5 HOH 74 374 74 HOH HOH A . E 5 HOH 75 375 75 HOH HOH A . E 5 HOH 76 376 76 HOH HOH A . E 5 HOH 77 377 77 HOH HOH A . E 5 HOH 78 378 78 HOH HOH A . E 5 HOH 79 379 79 HOH HOH A . E 5 HOH 80 380 80 HOH HOH A . E 5 HOH 81 381 81 HOH HOH A . E 5 HOH 82 382 82 HOH HOH A . E 5 HOH 83 383 83 HOH HOH A . E 5 HOH 84 384 84 HOH HOH A . E 5 HOH 85 385 85 HOH HOH A . E 5 HOH 86 386 86 HOH HOH A . E 5 HOH 87 387 87 HOH HOH A . E 5 HOH 88 388 88 HOH HOH A . E 5 HOH 89 389 89 HOH HOH A . E 5 HOH 90 390 90 HOH HOH A . E 5 HOH 91 391 91 HOH HOH A . E 5 HOH 92 392 92 HOH HOH A . E 5 HOH 93 393 93 HOH HOH A . E 5 HOH 94 394 94 HOH HOH A . E 5 HOH 95 395 95 HOH HOH A . E 5 HOH 96 396 96 HOH HOH A . E 5 HOH 97 397 97 HOH HOH A . E 5 HOH 98 398 98 HOH HOH A . E 5 HOH 99 399 99 HOH HOH A . E 5 HOH 100 400 100 HOH HOH A . E 5 HOH 101 401 101 HOH HOH A . E 5 HOH 102 402 102 HOH HOH A . E 5 HOH 103 403 103 HOH HOH A . E 5 HOH 104 404 104 HOH HOH A . E 5 HOH 105 405 105 HOH HOH A . E 5 HOH 106 406 106 HOH HOH A . E 5 HOH 107 407 107 HOH HOH A . E 5 HOH 108 408 108 HOH HOH A . E 5 HOH 109 409 109 HOH HOH A . E 5 HOH 110 410 110 HOH HOH A . E 5 HOH 111 411 111 HOH HOH A . E 5 HOH 112 412 112 HOH HOH A . E 5 HOH 113 413 113 HOH HOH A . E 5 HOH 114 414 114 HOH HOH A . E 5 HOH 115 415 115 HOH HOH A . E 5 HOH 116 416 116 HOH HOH A . E 5 HOH 117 417 117 HOH HOH A . E 5 HOH 118 418 118 HOH HOH A . E 5 HOH 119 419 119 HOH HOH A . E 5 HOH 120 420 120 HOH HOH A . E 5 HOH 121 421 121 HOH HOH A . E 5 HOH 122 422 122 HOH HOH A . E 5 HOH 123 423 123 HOH HOH A . E 5 HOH 124 424 124 HOH HOH A . E 5 HOH 125 425 125 HOH HOH A . E 5 HOH 126 426 126 HOH HOH A . E 5 HOH 127 427 127 HOH HOH A . E 5 HOH 128 428 128 HOH HOH A . E 5 HOH 129 429 129 HOH HOH A . E 5 HOH 130 430 130 HOH HOH A . E 5 HOH 131 431 131 HOH HOH A . E 5 HOH 132 432 132 HOH HOH A . E 5 HOH 133 433 133 HOH HOH A . E 5 HOH 134 434 134 HOH HOH A . E 5 HOH 135 435 135 HOH HOH A . E 5 HOH 136 436 136 HOH HOH A . E 5 HOH 137 437 137 HOH HOH A . E 5 HOH 138 438 138 HOH HOH A . E 5 HOH 139 439 139 HOH HOH A . E 5 HOH 140 440 140 HOH HOH A . E 5 HOH 141 441 141 HOH HOH A . E 5 HOH 142 442 142 HOH HOH A . E 5 HOH 143 443 143 HOH HOH A . E 5 HOH 144 444 144 HOH HOH A . E 5 HOH 145 445 145 HOH HOH A . E 5 HOH 146 446 146 HOH HOH A . E 5 HOH 147 447 147 HOH HOH A . E 5 HOH 148 448 148 HOH HOH A . E 5 HOH 149 449 149 HOH HOH A . E 5 HOH 150 450 150 HOH HOH A . E 5 HOH 151 451 151 HOH HOH A . E 5 HOH 152 452 152 HOH HOH A . E 5 HOH 153 453 153 HOH HOH A . E 5 HOH 154 454 154 HOH HOH A . E 5 HOH 155 455 155 HOH HOH A . E 5 HOH 156 456 156 HOH HOH A . E 5 HOH 157 457 157 HOH HOH A . E 5 HOH 158 458 158 HOH HOH A . E 5 HOH 159 459 459 HOH HOH A . E 5 HOH 160 460 160 HOH HOH A . E 5 HOH 161 461 161 HOH HOH A . E 5 HOH 162 462 162 HOH HOH A . E 5 HOH 163 463 163 HOH HOH A . E 5 HOH 164 464 164 HOH HOH A . E 5 HOH 165 465 165 HOH HOH A . E 5 HOH 166 466 166 HOH HOH A . E 5 HOH 167 467 167 HOH HOH A . E 5 HOH 168 468 168 HOH HOH A . E 5 HOH 169 469 169 HOH HOH A . E 5 HOH 170 470 170 HOH HOH A . E 5 HOH 171 471 171 HOH HOH A . E 5 HOH 172 472 172 HOH HOH A . E 5 HOH 173 473 173 HOH HOH A . E 5 HOH 174 474 174 HOH HOH A . E 5 HOH 175 475 175 HOH HOH A . E 5 HOH 176 476 176 HOH HOH A . E 5 HOH 177 477 177 HOH HOH A . E 5 HOH 178 478 178 HOH HOH A . E 5 HOH 179 479 179 HOH HOH A . E 5 HOH 180 480 180 HOH HOH A . E 5 HOH 181 481 181 HOH HOH A . E 5 HOH 182 482 182 HOH HOH A . E 5 HOH 183 483 183 HOH HOH A . E 5 HOH 184 484 184 HOH HOH A . E 5 HOH 185 485 185 HOH HOH A . E 5 HOH 186 486 186 HOH HOH A . E 5 HOH 187 487 187 HOH HOH A . E 5 HOH 188 488 188 HOH HOH A . E 5 HOH 189 489 189 HOH HOH A . E 5 HOH 190 490 190 HOH HOH A . E 5 HOH 191 491 191 HOH HOH A . E 5 HOH 192 492 192 HOH HOH A . E 5 HOH 193 493 193 HOH HOH A . E 5 HOH 194 494 194 HOH HOH A . E 5 HOH 195 495 195 HOH HOH A . E 5 HOH 196 496 196 HOH HOH A . E 5 HOH 197 497 197 HOH HOH A . E 5 HOH 198 498 198 HOH HOH A . E 5 HOH 199 499 199 HOH HOH A . E 5 HOH 200 500 200 HOH HOH A . E 5 HOH 201 501 201 HOH HOH A . E 5 HOH 202 502 202 HOH HOH A . E 5 HOH 203 503 203 HOH HOH A . E 5 HOH 204 504 204 HOH HOH A . E 5 HOH 205 505 205 HOH HOH A . E 5 HOH 206 506 206 HOH HOH A . E 5 HOH 207 507 207 HOH HOH A . E 5 HOH 208 508 208 HOH HOH A . E 5 HOH 209 509 209 HOH HOH A . E 5 HOH 210 510 210 HOH HOH A . E 5 HOH 211 511 211 HOH HOH A . E 5 HOH 212 512 212 HOH HOH A . E 5 HOH 213 513 213 HOH HOH A . E 5 HOH 214 514 214 HOH HOH A . E 5 HOH 215 515 215 HOH HOH A . E 5 HOH 216 516 216 HOH HOH A . E 5 HOH 217 517 217 HOH HOH A . E 5 HOH 218 518 218 HOH HOH A . E 5 HOH 219 519 219 HOH HOH A . E 5 HOH 220 520 220 HOH HOH A . E 5 HOH 221 521 221 HOH HOH A . E 5 HOH 222 522 222 HOH HOH A . E 5 HOH 223 523 223 HOH HOH A . E 5 HOH 224 524 224 HOH HOH A . E 5 HOH 225 525 225 HOH HOH A . E 5 HOH 226 526 226 HOH HOH A . E 5 HOH 227 527 227 HOH HOH A . E 5 HOH 228 528 228 HOH HOH A . E 5 HOH 229 529 229 HOH HOH A . E 5 HOH 230 530 230 HOH HOH A . E 5 HOH 231 531 231 HOH HOH A . E 5 HOH 232 532 232 HOH HOH A . E 5 HOH 233 533 233 HOH HOH A . E 5 HOH 234 534 234 HOH HOH A . E 5 HOH 235 535 235 HOH HOH A . E 5 HOH 236 536 236 HOH HOH A . E 5 HOH 237 537 237 HOH HOH A . E 5 HOH 238 538 238 HOH HOH A . E 5 HOH 239 539 239 HOH HOH A . E 5 HOH 240 540 240 HOH HOH A . E 5 HOH 241 541 241 HOH HOH A . E 5 HOH 242 542 242 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-08-14 2 'Structure model' 1 1 2017-09-13 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description 1 1 'Structure model' repository 'Initial release' ? 2 2 'Structure model' repository Obsolete ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' pdbx_database_PDB_obs_spr 2 2 'Structure model' pdbx_database_status # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_pdbx_database_status.status_code' 2 2 'Structure model' '_pdbx_database_status.status_code_sf' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 AMoRE phasing . ? 2 REFMAC refinement 5.7.0032 ? 3 MOSFLM 'data reduction' . ? 4 SCALA 'data scaling' . ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 MET A 1 ? ? 56.49 -139.88 2 1 TYR A 68 ? ? 75.52 151.88 3 1 ASN A 128 ? ? -85.13 36.41 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 CYTARABINE AR3 3 'PHOSPHATE ION' PO4 4 GLYCEROL GOL 5 water HOH #