data_4LXG # _entry.id 4LXG # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4LXG RCSB RCSB081207 WWPDB D_1000081207 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 4LXH . unspecified PDB 4LXI . unspecified PDB 4LYD . unspecified # _pdbx_database_status.entry_id 4LXG _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2013-07-29 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Bhowmik, S.' 1 'Bolin, J.T.' 2 # _citation.id primary _citation.title 'The Lid Domain of the MCP Hydrolase DxnB2 Contributes to the Reactivity toward Recalcitrant PCB Metabolites.' _citation.journal_abbrev Biochemistry _citation.journal_volume 52 _citation.page_first 5685 _citation.page_last 5695 _citation.year 2013 _citation.journal_id_ASTM BICHAW _citation.country US _citation.journal_id_ISSN 0006-2960 _citation.journal_id_CSD 0033 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23879719 _citation.pdbx_database_id_DOI 10.1021/bi400774m # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Ruzzini, A.C.' 1 primary 'Bhowmik, S.' 2 primary 'Yam, K.C.' 3 primary 'Ghosh, S.' 4 primary 'Bolin, J.T.' 5 primary 'Eltis, L.D.' 6 # _cell.entry_id 4LXG _cell.length_a 66.983 _cell.length_b 66.983 _cell.length_c 327.743 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4LXG _symmetry.space_group_name_H-M 'P 65 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 179 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'MCP Hydrolase' 30224.531 1 3.7.1.8 ? ? ? 2 non-polymer syn 'SULFATE ION' 96.063 3 ? ? ? ? 3 water nat water 18.015 81 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'Alpha/beta hydrolase fold' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MFEQFESKFIDCDGIRTHYIEMGEGDPLVLVHGGGAGADGRSNFADNFPIFARHMRVIAYDMVGFGQTDAPDPAGFAYTQ AARTDHLISFIKALGLSKICLIGNSMGGTTACGAALKAPELIDRLVLMGAAVNISPDDMVANRDDLAAVMSYDGSEEGMR KIIAALTHSYQPTDDIVHYRHEASLRPTTTAAYKATMGWAKQNGLYYSPEQLASLTMPVLVLGGKNDVMVPVRKVIDQIL AIPQAIGHVFPNCGHWVMIEYPEEFCTQTLHFFGKLD ; _entity_poly.pdbx_seq_one_letter_code_can ;MFEQFESKFIDCDGIRTHYIEMGEGDPLVLVHGGGAGADGRSNFADNFPIFARHMRVIAYDMVGFGQTDAPDPAGFAYTQ AARTDHLISFIKALGLSKICLIGNSMGGTTACGAALKAPELIDRLVLMGAAVNISPDDMVANRDDLAAVMSYDGSEEGMR KIIAALTHSYQPTDDIVHYRHEASLRPTTTAAYKATMGWAKQNGLYYSPEQLASLTMPVLVLGGKNDVMVPVRKVIDQIL AIPQAIGHVFPNCGHWVMIEYPEEFCTQTLHFFGKLD ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 PHE n 1 3 GLU n 1 4 GLN n 1 5 PHE n 1 6 GLU n 1 7 SER n 1 8 LYS n 1 9 PHE n 1 10 ILE n 1 11 ASP n 1 12 CYS n 1 13 ASP n 1 14 GLY n 1 15 ILE n 1 16 ARG n 1 17 THR n 1 18 HIS n 1 19 TYR n 1 20 ILE n 1 21 GLU n 1 22 MET n 1 23 GLY n 1 24 GLU n 1 25 GLY n 1 26 ASP n 1 27 PRO n 1 28 LEU n 1 29 VAL n 1 30 LEU n 1 31 VAL n 1 32 HIS n 1 33 GLY n 1 34 GLY n 1 35 GLY n 1 36 ALA n 1 37 GLY n 1 38 ALA n 1 39 ASP n 1 40 GLY n 1 41 ARG n 1 42 SER n 1 43 ASN n 1 44 PHE n 1 45 ALA n 1 46 ASP n 1 47 ASN n 1 48 PHE n 1 49 PRO n 1 50 ILE n 1 51 PHE n 1 52 ALA n 1 53 ARG n 1 54 HIS n 1 55 MET n 1 56 ARG n 1 57 VAL n 1 58 ILE n 1 59 ALA n 1 60 TYR n 1 61 ASP n 1 62 MET n 1 63 VAL n 1 64 GLY n 1 65 PHE n 1 66 GLY n 1 67 GLN n 1 68 THR n 1 69 ASP n 1 70 ALA n 1 71 PRO n 1 72 ASP n 1 73 PRO n 1 74 ALA n 1 75 GLY n 1 76 PHE n 1 77 ALA n 1 78 TYR n 1 79 THR n 1 80 GLN n 1 81 ALA n 1 82 ALA n 1 83 ARG n 1 84 THR n 1 85 ASP n 1 86 HIS n 1 87 LEU n 1 88 ILE n 1 89 SER n 1 90 PHE n 1 91 ILE n 1 92 LYS n 1 93 ALA n 1 94 LEU n 1 95 GLY n 1 96 LEU n 1 97 SER n 1 98 LYS n 1 99 ILE n 1 100 CYS n 1 101 LEU n 1 102 ILE n 1 103 GLY n 1 104 ASN n 1 105 SER n 1 106 MET n 1 107 GLY n 1 108 GLY n 1 109 THR n 1 110 THR n 1 111 ALA n 1 112 CYS n 1 113 GLY n 1 114 ALA n 1 115 ALA n 1 116 LEU n 1 117 LYS n 1 118 ALA n 1 119 PRO n 1 120 GLU n 1 121 LEU n 1 122 ILE n 1 123 ASP n 1 124 ARG n 1 125 LEU n 1 126 VAL n 1 127 LEU n 1 128 MET n 1 129 GLY n 1 130 ALA n 1 131 ALA n 1 132 VAL n 1 133 ASN n 1 134 ILE n 1 135 SER n 1 136 PRO n 1 137 ASP n 1 138 ASP n 1 139 MET n 1 140 VAL n 1 141 ALA n 1 142 ASN n 1 143 ARG n 1 144 ASP n 1 145 ASP n 1 146 LEU n 1 147 ALA n 1 148 ALA n 1 149 VAL n 1 150 MET n 1 151 SER n 1 152 TYR n 1 153 ASP n 1 154 GLY n 1 155 SER n 1 156 GLU n 1 157 GLU n 1 158 GLY n 1 159 MET n 1 160 ARG n 1 161 LYS n 1 162 ILE n 1 163 ILE n 1 164 ALA n 1 165 ALA n 1 166 LEU n 1 167 THR n 1 168 HIS n 1 169 SER n 1 170 TYR n 1 171 GLN n 1 172 PRO n 1 173 THR n 1 174 ASP n 1 175 ASP n 1 176 ILE n 1 177 VAL n 1 178 HIS n 1 179 TYR n 1 180 ARG n 1 181 HIS n 1 182 GLU n 1 183 ALA n 1 184 SER n 1 185 LEU n 1 186 ARG n 1 187 PRO n 1 188 THR n 1 189 THR n 1 190 THR n 1 191 ALA n 1 192 ALA n 1 193 TYR n 1 194 LYS n 1 195 ALA n 1 196 THR n 1 197 MET n 1 198 GLY n 1 199 TRP n 1 200 ALA n 1 201 LYS n 1 202 GLN n 1 203 ASN n 1 204 GLY n 1 205 LEU n 1 206 TYR n 1 207 TYR n 1 208 SER n 1 209 PRO n 1 210 GLU n 1 211 GLN n 1 212 LEU n 1 213 ALA n 1 214 SER n 1 215 LEU n 1 216 THR n 1 217 MET n 1 218 PRO n 1 219 VAL n 1 220 LEU n 1 221 VAL n 1 222 LEU n 1 223 GLY n 1 224 GLY n 1 225 LYS n 1 226 ASN n 1 227 ASP n 1 228 VAL n 1 229 MET n 1 230 VAL n 1 231 PRO n 1 232 VAL n 1 233 ARG n 1 234 LYS n 1 235 VAL n 1 236 ILE n 1 237 ASP n 1 238 GLN n 1 239 ILE n 1 240 LEU n 1 241 ALA n 1 242 ILE n 1 243 PRO n 1 244 GLN n 1 245 ALA n 1 246 ILE n 1 247 GLY n 1 248 HIS n 1 249 VAL n 1 250 PHE n 1 251 PRO n 1 252 ASN n 1 253 CYS n 1 254 GLY n 1 255 HIS n 1 256 TRP n 1 257 VAL n 1 258 MET n 1 259 ILE n 1 260 GLU n 1 261 TYR n 1 262 PRO n 1 263 GLU n 1 264 GLU n 1 265 PHE n 1 266 CYS n 1 267 THR n 1 268 GLN n 1 269 THR n 1 270 LEU n 1 271 HIS n 1 272 PHE n 1 273 PHE n 1 274 GLY n 1 275 LYS n 1 276 LEU n 1 277 ASP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'dxnB2, Swit_3055' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain RW1 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Sphingomonas wittichii RW1' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 392499 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code A5VAT9_SPHWW _struct_ref.pdbx_db_accession A5VAT9 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MFEQFESKFIDCDGIRTHYIEMGEGDPLVLVHGGGAGADGRSNFADNFPIFARHMRVIAYDMVGFGQTDAPDPAGFAYTQ AARTDHLISFIKALGLSKICLIGNSMGGTTACGAALKAPELIDRLVLMGAAVNISPDDMVANRDDLAAVMSYDGSEEGMR KIIAALTHSYQPTDDIVHYRHEASLRPTTTAAYKATMGWAKQNGLYYSPEQLASLTMPVLVLGGKNDVMVPVRKVIDQIL AIPQAIGHVFPNCGHWVMIEYPEEFCTQTLHFFGKL ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4LXG _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 277 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession A5VAT9 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 277 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 277 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 4LXG _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 3.47 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 64.58 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION' _exptl_crystal_grow.pH 8.2 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.pdbx_details ;grid of ammonium sulfate (1.0-2.5 M) containing 0.1 M Tris, pH 8.2 and 6-10% ethanol, VAPOR DIFFUSION, temperature 293K ; _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator ? _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 14-BM-C' _diffrn_source.pdbx_wavelength_list 1 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 14-BM-C # _reflns.entry_id 4LXG _reflns.observed_criterion_sigma_F 2 _reflns.observed_criterion_sigma_I 2 _reflns.d_resolution_high 2.2 _reflns.d_resolution_low 58.03 _reflns.number_all 22668 _reflns.number_obs 22668 _reflns.percent_possible_obs 99.5 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.2 _reflns_shell.d_res_low 2.2 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 99.5 _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_redundancy ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4LXG _refine.ls_d_res_high 2.2200 _refine.ls_d_res_low 36.4600 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.4800 _refine.ls_number_reflns_obs 22550 _refine.ls_number_reflns_all 22668 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN USED IF PRESENT IN THE INPUT U VALUES: WITH TLS ADDED' _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.2033 _refine.ls_R_factor_R_work 0.2017 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.2336 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.1000 _refine.ls_number_reflns_R_free 1150 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 52.9638 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] 0.7500 _refine.aniso_B[2][2] 0.7500 _refine.aniso_B[3][3] -2.4400 _refine.aniso_B[1][2] 0.7500 _refine.aniso_B[1][3] 0.0000 _refine.aniso_B[2][3] 0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9520 _refine.correlation_coeff_Fo_to_Fc_free 0.9300 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.1900 _refine.pdbx_overall_ESU_R_Free 0.1690 _refine.overall_SU_ML 0.1390 _refine.overall_SU_B 11.3780 _refine.solvent_model_details 'BABINET MODEL WITH MASK' _refine.pdbx_solvent_vdw_probe_radii 1.2000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model 'PDB ENTRY 1J1I' _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 119.640 _refine.B_iso_min 31.430 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.500 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2090 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 15 _refine_hist.number_atoms_solvent 81 _refine_hist.number_atoms_total 2186 _refine_hist.d_res_high 2.2200 _refine_hist.d_res_low 36.4600 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 2157 0.006 0.019 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 2928 1.017 1.959 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 274 5.141 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 92 34.900 24.022 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 341 13.502 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 10 12.295 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 324 0.064 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 1641 0.005 0.021 ? ? 'X-RAY DIFFRACTION' r_mcbond_it 1099 2.129 5.026 ? ? 'X-RAY DIFFRACTION' r_mcangle_it 1372 3.144 9.394 ? ? 'X-RAY DIFFRACTION' r_scbond_it 1058 3.465 5.442 ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 2.2230 _refine_ls_shell.d_res_low 2.2810 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 98.3300 _refine_ls_shell.number_reflns_R_work 1518 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.2730 _refine_ls_shell.R_factor_R_free 0.3460 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 71 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 1589 _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4LXG _struct.title 'Crystal structure of DxnB2, a carbon - carbon bond hydrolase from Sphingomonas wittichii RW1' _struct.pdbx_descriptor 'MCP Hydrolase (E.C.3.7.1.8)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4LXG _struct_keywords.text 'Carbon-carbon bond hydrolase, Rossmann Fold, alpha/beta hydrolase fold, Cytosolic, HYDROLASE' _struct_keywords.pdbx_keywords HYDROLASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 39 ? ALA A 45 ? ASP A 39 ALA A 45 1 ? 7 HELX_P HELX_P2 2 ASN A 47 ? ARG A 53 ? ASN A 47 ARG A 53 1 ? 7 HELX_P HELX_P3 3 THR A 79 ? LEU A 94 ? THR A 79 LEU A 94 1 ? 16 HELX_P HELX_P4 4 SER A 105 ? ALA A 118 ? SER A 105 ALA A 118 1 ? 14 HELX_P HELX_P5 5 SER A 135 ? VAL A 140 ? SER A 135 VAL A 140 1 ? 6 HELX_P HELX_P6 6 LEU A 146 ? SER A 151 ? LEU A 146 SER A 151 1 ? 6 HELX_P HELX_P7 7 SER A 155 ? THR A 167 ? SER A 155 THR A 167 1 ? 13 HELX_P HELX_P8 8 THR A 173 ? SER A 184 ? THR A 173 SER A 184 1 ? 12 HELX_P HELX_P9 9 ARG A 186 ? GLY A 204 ? ARG A 186 GLY A 204 1 ? 19 HELX_P HELX_P10 10 SER A 208 ? SER A 214 ? SER A 208 SER A 214 1 ? 7 HELX_P HELX_P11 11 PRO A 231 ? ILE A 242 ? PRO A 231 ILE A 242 1 ? 12 HELX_P HELX_P12 12 TRP A 256 ? TYR A 261 ? TRP A 256 TYR A 261 1 ? 6 HELX_P HELX_P13 13 TYR A 261 ? PHE A 273 ? TYR A 261 PHE A 273 1 ? 13 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 8 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? parallel A 6 7 ? parallel A 7 8 ? parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS A 8 ? CYS A 12 ? LYS A 8 CYS A 12 A 2 ILE A 15 ? MET A 22 ? ILE A 15 MET A 22 A 3 ARG A 56 ? TYR A 60 ? ARG A 56 TYR A 60 A 4 PRO A 27 ? VAL A 31 ? PRO A 27 VAL A 31 A 5 ILE A 99 ? ASN A 104 ? ILE A 99 ASN A 104 A 6 ILE A 122 ? MET A 128 ? ILE A 122 MET A 128 A 7 VAL A 219 ? GLY A 224 ? VAL A 219 GLY A 224 A 8 ILE A 246 ? PHE A 250 ? ILE A 246 PHE A 250 B 1 ASN A 133 ? ILE A 134 ? ASN A 133 ILE A 134 B 2 LEU A 205 ? TYR A 206 ? LEU A 205 TYR A 206 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 10 ? N ILE A 10 O THR A 17 ? O THR A 17 A 2 3 N ILE A 20 ? N ILE A 20 O ALA A 59 ? O ALA A 59 A 3 4 O ILE A 58 ? O ILE A 58 N LEU A 28 ? N LEU A 28 A 4 5 N VAL A 31 ? N VAL A 31 O ILE A 102 ? O ILE A 102 A 5 6 N ILE A 99 ? N ILE A 99 O ASP A 123 ? O ASP A 123 A 6 7 N LEU A 127 ? N LEU A 127 O LEU A 222 ? O LEU A 222 A 7 8 N VAL A 221 ? N VAL A 221 O ILE A 246 ? O ILE A 246 B 1 2 N ILE A 134 ? N ILE A 134 O LEU A 205 ? O LEU A 205 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 12 'BINDING SITE FOR RESIDUE SO4 A 501' AC2 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE SO4 A 502' AC3 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE SO4 A 503' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 12 GLY A 33 ? GLY A 33 . ? 1_555 ? 2 AC1 12 GLY A 34 ? GLY A 34 . ? 1_555 ? 3 AC1 12 GLY A 35 ? GLY A 35 . ? 1_555 ? 4 AC1 12 ASN A 104 ? ASN A 104 . ? 1_555 ? 5 AC1 12 SER A 105 ? SER A 105 . ? 1_555 ? 6 AC1 12 LEU A 166 ? LEU A 166 . ? 1_555 ? 7 AC1 12 MET A 229 ? MET A 229 . ? 1_555 ? 8 AC1 12 HIS A 255 ? HIS A 255 . ? 1_555 ? 9 AC1 12 TRP A 256 ? TRP A 256 . ? 1_555 ? 10 AC1 12 HOH E . ? HOH A 634 . ? 1_555 ? 11 AC1 12 HOH E . ? HOH A 637 . ? 1_555 ? 12 AC1 12 HOH E . ? HOH A 675 . ? 1_555 ? 13 AC2 5 TYR A 261 ? TYR A 261 . ? 1_555 ? 14 AC2 5 PRO A 262 ? PRO A 262 . ? 1_555 ? 15 AC2 5 GLU A 263 ? GLU A 263 . ? 1_555 ? 16 AC2 5 GLU A 264 ? GLU A 264 . ? 1_555 ? 17 AC2 5 HOH E . ? HOH A 632 . ? 1_555 ? 18 AC3 4 SER A 155 ? SER A 155 . ? 1_555 ? 19 AC3 4 GLU A 156 ? GLU A 156 . ? 1_555 ? 20 AC3 4 HIS A 181 ? HIS A 181 . ? 1_555 ? 21 AC3 4 HOH E . ? HOH A 681 . ? 1_555 ? # _atom_sites.entry_id 4LXG _atom_sites.fract_transf_matrix[1][1] 0.014929 _atom_sites.fract_transf_matrix[1][2] 0.008619 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.017239 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.003051 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 1 MET MET A . n A 1 2 PHE 2 2 2 PHE PHE A . n A 1 3 GLU 3 3 3 GLU GLU A . n A 1 4 GLN 4 4 4 GLN GLN A . n A 1 5 PHE 5 5 5 PHE PHE A . n A 1 6 GLU 6 6 6 GLU GLU A . n A 1 7 SER 7 7 7 SER SER A . n A 1 8 LYS 8 8 8 LYS LYS A . n A 1 9 PHE 9 9 9 PHE PHE A . n A 1 10 ILE 10 10 10 ILE ILE A . n A 1 11 ASP 11 11 11 ASP ASP A . n A 1 12 CYS 12 12 12 CYS CYS A . n A 1 13 ASP 13 13 13 ASP ASP A . n A 1 14 GLY 14 14 14 GLY GLY A . n A 1 15 ILE 15 15 15 ILE ILE A . n A 1 16 ARG 16 16 16 ARG ARG A . n A 1 17 THR 17 17 17 THR THR A . n A 1 18 HIS 18 18 18 HIS HIS A . n A 1 19 TYR 19 19 19 TYR TYR A . n A 1 20 ILE 20 20 20 ILE ILE A . n A 1 21 GLU 21 21 21 GLU GLU A . n A 1 22 MET 22 22 22 MET MET A . n A 1 23 GLY 23 23 23 GLY GLY A . n A 1 24 GLU 24 24 24 GLU GLU A . n A 1 25 GLY 25 25 25 GLY GLY A . n A 1 26 ASP 26 26 26 ASP ASP A . n A 1 27 PRO 27 27 27 PRO PRO A . n A 1 28 LEU 28 28 28 LEU LEU A . n A 1 29 VAL 29 29 29 VAL VAL A . n A 1 30 LEU 30 30 30 LEU LEU A . n A 1 31 VAL 31 31 31 VAL VAL A . n A 1 32 HIS 32 32 32 HIS HIS A . n A 1 33 GLY 33 33 33 GLY GLY A . n A 1 34 GLY 34 34 34 GLY GLY A . n A 1 35 GLY 35 35 35 GLY GLY A . n A 1 36 ALA 36 36 36 ALA ALA A . n A 1 37 GLY 37 37 37 GLY GLY A . n A 1 38 ALA 38 38 38 ALA ALA A . n A 1 39 ASP 39 39 39 ASP ASP A . n A 1 40 GLY 40 40 40 GLY GLY A . n A 1 41 ARG 41 41 41 ARG ARG A . n A 1 42 SER 42 42 42 SER SER A . n A 1 43 ASN 43 43 43 ASN ASN A . n A 1 44 PHE 44 44 44 PHE PHE A . n A 1 45 ALA 45 45 45 ALA ALA A . n A 1 46 ASP 46 46 46 ASP ASP A . n A 1 47 ASN 47 47 47 ASN ASN A . n A 1 48 PHE 48 48 48 PHE PHE A . n A 1 49 PRO 49 49 49 PRO PRO A . n A 1 50 ILE 50 50 50 ILE ILE A . n A 1 51 PHE 51 51 51 PHE PHE A . n A 1 52 ALA 52 52 52 ALA ALA A . n A 1 53 ARG 53 53 53 ARG ARG A . n A 1 54 HIS 54 54 54 HIS HIS A . n A 1 55 MET 55 55 55 MET MET A . n A 1 56 ARG 56 56 56 ARG ARG A . n A 1 57 VAL 57 57 57 VAL VAL A . n A 1 58 ILE 58 58 58 ILE ILE A . n A 1 59 ALA 59 59 59 ALA ALA A . n A 1 60 TYR 60 60 60 TYR TYR A . n A 1 61 ASP 61 61 61 ASP ASP A . n A 1 62 MET 62 62 62 MET MET A . n A 1 63 VAL 63 63 63 VAL VAL A . n A 1 64 GLY 64 64 64 GLY GLY A . n A 1 65 PHE 65 65 65 PHE PHE A . n A 1 66 GLY 66 66 66 GLY GLY A . n A 1 67 GLN 67 67 67 GLN GLN A . n A 1 68 THR 68 68 68 THR THR A . n A 1 69 ASP 69 69 69 ASP ASP A . n A 1 70 ALA 70 70 70 ALA ALA A . n A 1 71 PRO 71 71 71 PRO PRO A . n A 1 72 ASP 72 72 72 ASP ASP A . n A 1 73 PRO 73 73 73 PRO PRO A . n A 1 74 ALA 74 74 74 ALA ALA A . n A 1 75 GLY 75 75 75 GLY GLY A . n A 1 76 PHE 76 76 76 PHE PHE A . n A 1 77 ALA 77 77 77 ALA ALA A . n A 1 78 TYR 78 78 78 TYR TYR A . n A 1 79 THR 79 79 79 THR THR A . n A 1 80 GLN 80 80 80 GLN GLN A . n A 1 81 ALA 81 81 81 ALA ALA A . n A 1 82 ALA 82 82 82 ALA ALA A . n A 1 83 ARG 83 83 83 ARG ARG A . n A 1 84 THR 84 84 84 THR THR A . n A 1 85 ASP 85 85 85 ASP ASP A . n A 1 86 HIS 86 86 86 HIS HIS A . n A 1 87 LEU 87 87 87 LEU LEU A . n A 1 88 ILE 88 88 88 ILE ILE A . n A 1 89 SER 89 89 89 SER SER A . n A 1 90 PHE 90 90 90 PHE PHE A . n A 1 91 ILE 91 91 91 ILE ILE A . n A 1 92 LYS 92 92 92 LYS LYS A . n A 1 93 ALA 93 93 93 ALA ALA A . n A 1 94 LEU 94 94 94 LEU LEU A . n A 1 95 GLY 95 95 95 GLY GLY A . n A 1 96 LEU 96 96 96 LEU LEU A . n A 1 97 SER 97 97 97 SER SER A . n A 1 98 LYS 98 98 98 LYS LYS A . n A 1 99 ILE 99 99 99 ILE ILE A . n A 1 100 CYS 100 100 100 CYS CYS A . n A 1 101 LEU 101 101 101 LEU LEU A . n A 1 102 ILE 102 102 102 ILE ILE A . n A 1 103 GLY 103 103 103 GLY GLY A . n A 1 104 ASN 104 104 104 ASN ASN A . n A 1 105 SER 105 105 105 SER SER A . n A 1 106 MET 106 106 106 MET MET A . n A 1 107 GLY 107 107 107 GLY GLY A . n A 1 108 GLY 108 108 108 GLY GLY A . n A 1 109 THR 109 109 109 THR THR A . n A 1 110 THR 110 110 110 THR THR A . n A 1 111 ALA 111 111 111 ALA ALA A . n A 1 112 CYS 112 112 112 CYS CYS A . n A 1 113 GLY 113 113 113 GLY GLY A . n A 1 114 ALA 114 114 114 ALA ALA A . n A 1 115 ALA 115 115 115 ALA ALA A . n A 1 116 LEU 116 116 116 LEU LEU A . n A 1 117 LYS 117 117 117 LYS LYS A . n A 1 118 ALA 118 118 118 ALA ALA A . n A 1 119 PRO 119 119 119 PRO PRO A . n A 1 120 GLU 120 120 120 GLU GLU A . n A 1 121 LEU 121 121 121 LEU LEU A . n A 1 122 ILE 122 122 122 ILE ILE A . n A 1 123 ASP 123 123 123 ASP ASP A . n A 1 124 ARG 124 124 124 ARG ARG A . n A 1 125 LEU 125 125 125 LEU LEU A . n A 1 126 VAL 126 126 126 VAL VAL A . n A 1 127 LEU 127 127 127 LEU LEU A . n A 1 128 MET 128 128 128 MET MET A . n A 1 129 GLY 129 129 129 GLY GLY A . n A 1 130 ALA 130 130 130 ALA ALA A . n A 1 131 ALA 131 131 131 ALA ALA A . n A 1 132 VAL 132 132 132 VAL VAL A . n A 1 133 ASN 133 133 133 ASN ASN A . n A 1 134 ILE 134 134 134 ILE ILE A . n A 1 135 SER 135 135 135 SER SER A . n A 1 136 PRO 136 136 136 PRO PRO A . n A 1 137 ASP 137 137 137 ASP ASP A . n A 1 138 ASP 138 138 138 ASP ASP A . n A 1 139 MET 139 139 139 MET MET A . n A 1 140 VAL 140 140 140 VAL VAL A . n A 1 141 ALA 141 141 141 ALA ALA A . n A 1 142 ASN 142 142 ? ? ? A . n A 1 143 ARG 143 143 ? ? ? A . n A 1 144 ASP 144 144 144 ASP ASP A . n A 1 145 ASP 145 145 145 ASP ASP A . n A 1 146 LEU 146 146 146 LEU LEU A . n A 1 147 ALA 147 147 147 ALA ALA A . n A 1 148 ALA 148 148 148 ALA ALA A . n A 1 149 VAL 149 149 149 VAL VAL A . n A 1 150 MET 150 150 150 MET MET A . n A 1 151 SER 151 151 151 SER SER A . n A 1 152 TYR 152 152 152 TYR TYR A . n A 1 153 ASP 153 153 153 ASP ASP A . n A 1 154 GLY 154 154 154 GLY GLY A . n A 1 155 SER 155 155 155 SER SER A . n A 1 156 GLU 156 156 156 GLU GLU A . n A 1 157 GLU 157 157 157 GLU GLU A . n A 1 158 GLY 158 158 158 GLY GLY A . n A 1 159 MET 159 159 159 MET MET A . n A 1 160 ARG 160 160 160 ARG ARG A . n A 1 161 LYS 161 161 161 LYS LYS A . n A 1 162 ILE 162 162 162 ILE ILE A . n A 1 163 ILE 163 163 163 ILE ILE A . n A 1 164 ALA 164 164 164 ALA ALA A . n A 1 165 ALA 165 165 165 ALA ALA A . n A 1 166 LEU 166 166 166 LEU LEU A . n A 1 167 THR 167 167 167 THR THR A . n A 1 168 HIS 168 168 168 HIS HIS A . n A 1 169 SER 169 169 169 SER SER A . n A 1 170 TYR 170 170 170 TYR TYR A . n A 1 171 GLN 171 171 171 GLN GLN A . n A 1 172 PRO 172 172 172 PRO PRO A . n A 1 173 THR 173 173 173 THR THR A . n A 1 174 ASP 174 174 174 ASP ASP A . n A 1 175 ASP 175 175 175 ASP ASP A . n A 1 176 ILE 176 176 176 ILE ILE A . n A 1 177 VAL 177 177 177 VAL VAL A . n A 1 178 HIS 178 178 178 HIS HIS A . n A 1 179 TYR 179 179 179 TYR TYR A . n A 1 180 ARG 180 180 180 ARG ARG A . n A 1 181 HIS 181 181 181 HIS HIS A . n A 1 182 GLU 182 182 182 GLU GLU A . n A 1 183 ALA 183 183 183 ALA ALA A . n A 1 184 SER 184 184 184 SER SER A . n A 1 185 LEU 185 185 185 LEU LEU A . n A 1 186 ARG 186 186 186 ARG ARG A . n A 1 187 PRO 187 187 187 PRO PRO A . n A 1 188 THR 188 188 188 THR THR A . n A 1 189 THR 189 189 189 THR THR A . n A 1 190 THR 190 190 190 THR THR A . n A 1 191 ALA 191 191 191 ALA ALA A . n A 1 192 ALA 192 192 192 ALA ALA A . n A 1 193 TYR 193 193 193 TYR TYR A . n A 1 194 LYS 194 194 194 LYS LYS A . n A 1 195 ALA 195 195 195 ALA ALA A . n A 1 196 THR 196 196 196 THR THR A . n A 1 197 MET 197 197 197 MET MET A . n A 1 198 GLY 198 198 198 GLY GLY A . n A 1 199 TRP 199 199 199 TRP TRP A . n A 1 200 ALA 200 200 200 ALA ALA A . n A 1 201 LYS 201 201 201 LYS LYS A . n A 1 202 GLN 202 202 202 GLN GLN A . n A 1 203 ASN 203 203 203 ASN ASN A . n A 1 204 GLY 204 204 204 GLY GLY A . n A 1 205 LEU 205 205 205 LEU LEU A . n A 1 206 TYR 206 206 206 TYR TYR A . n A 1 207 TYR 207 207 207 TYR TYR A . n A 1 208 SER 208 208 208 SER SER A . n A 1 209 PRO 209 209 209 PRO PRO A . n A 1 210 GLU 210 210 210 GLU GLU A . n A 1 211 GLN 211 211 211 GLN GLN A . n A 1 212 LEU 212 212 212 LEU LEU A . n A 1 213 ALA 213 213 213 ALA ALA A . n A 1 214 SER 214 214 214 SER SER A . n A 1 215 LEU 215 215 215 LEU LEU A . n A 1 216 THR 216 216 216 THR THR A . n A 1 217 MET 217 217 217 MET MET A . n A 1 218 PRO 218 218 218 PRO PRO A . n A 1 219 VAL 219 219 219 VAL VAL A . n A 1 220 LEU 220 220 220 LEU LEU A . n A 1 221 VAL 221 221 221 VAL VAL A . n A 1 222 LEU 222 222 222 LEU LEU A . n A 1 223 GLY 223 223 223 GLY GLY A . n A 1 224 GLY 224 224 224 GLY GLY A . n A 1 225 LYS 225 225 225 LYS LYS A . n A 1 226 ASN 226 226 226 ASN ASN A . n A 1 227 ASP 227 227 227 ASP ASP A . n A 1 228 VAL 228 228 228 VAL VAL A . n A 1 229 MET 229 229 229 MET MET A . n A 1 230 VAL 230 230 230 VAL VAL A . n A 1 231 PRO 231 231 231 PRO PRO A . n A 1 232 VAL 232 232 232 VAL VAL A . n A 1 233 ARG 233 233 233 ARG ARG A . n A 1 234 LYS 234 234 234 LYS LYS A . n A 1 235 VAL 235 235 235 VAL VAL A . n A 1 236 ILE 236 236 236 ILE ILE A . n A 1 237 ASP 237 237 237 ASP ASP A . n A 1 238 GLN 238 238 238 GLN GLN A . n A 1 239 ILE 239 239 239 ILE ILE A . n A 1 240 LEU 240 240 240 LEU LEU A . n A 1 241 ALA 241 241 241 ALA ALA A . n A 1 242 ILE 242 242 242 ILE ILE A . n A 1 243 PRO 243 243 243 PRO PRO A . n A 1 244 GLN 244 244 244 GLN GLN A . n A 1 245 ALA 245 245 245 ALA ALA A . n A 1 246 ILE 246 246 246 ILE ILE A . n A 1 247 GLY 247 247 247 GLY GLY A . n A 1 248 HIS 248 248 248 HIS HIS A . n A 1 249 VAL 249 249 249 VAL VAL A . n A 1 250 PHE 250 250 250 PHE PHE A . n A 1 251 PRO 251 251 251 PRO PRO A . n A 1 252 ASN 252 252 252 ASN ASN A . n A 1 253 CYS 253 253 253 CYS CYS A . n A 1 254 GLY 254 254 254 GLY GLY A . n A 1 255 HIS 255 255 255 HIS HIS A . n A 1 256 TRP 256 256 256 TRP TRP A . n A 1 257 VAL 257 257 257 VAL VAL A . n A 1 258 MET 258 258 258 MET MET A . n A 1 259 ILE 259 259 259 ILE ILE A . n A 1 260 GLU 260 260 260 GLU GLU A . n A 1 261 TYR 261 261 261 TYR TYR A . n A 1 262 PRO 262 262 262 PRO PRO A . n A 1 263 GLU 263 263 263 GLU GLU A . n A 1 264 GLU 264 264 264 GLU GLU A . n A 1 265 PHE 265 265 265 PHE PHE A . n A 1 266 CYS 266 266 266 CYS CYS A . n A 1 267 THR 267 267 267 THR THR A . n A 1 268 GLN 268 268 268 GLN GLN A . n A 1 269 THR 269 269 269 THR THR A . n A 1 270 LEU 270 270 270 LEU LEU A . n A 1 271 HIS 271 271 271 HIS HIS A . n A 1 272 PHE 272 272 272 PHE PHE A . n A 1 273 PHE 273 273 273 PHE PHE A . n A 1 274 GLY 274 274 274 GLY GLY A . n A 1 275 LYS 275 275 275 LYS LYS A . n A 1 276 LEU 276 276 276 LEU LEU A . n A 1 277 ASP 277 277 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 1 501 501 SO4 SO4 A . C 2 SO4 1 502 502 SO4 SO4 A . D 2 SO4 1 503 503 SO4 SO4 A . E 3 HOH 1 601 1 HOH HOH A . E 3 HOH 2 602 2 HOH HOH A . E 3 HOH 3 603 3 HOH HOH A . E 3 HOH 4 604 4 HOH HOH A . E 3 HOH 5 605 5 HOH HOH A . E 3 HOH 6 606 6 HOH HOH A . E 3 HOH 7 607 7 HOH HOH A . E 3 HOH 8 608 8 HOH HOH A . E 3 HOH 9 609 9 HOH HOH A . E 3 HOH 10 610 10 HOH HOH A . E 3 HOH 11 611 11 HOH HOH A . E 3 HOH 12 612 12 HOH HOH A . E 3 HOH 13 613 13 HOH HOH A . E 3 HOH 14 614 14 HOH HOH A . E 3 HOH 15 615 15 HOH HOH A . E 3 HOH 16 616 16 HOH HOH A . E 3 HOH 17 617 17 HOH HOH A . E 3 HOH 18 618 18 HOH HOH A . E 3 HOH 19 619 19 HOH HOH A . E 3 HOH 20 620 20 HOH HOH A . E 3 HOH 21 621 21 HOH HOH A . E 3 HOH 22 622 22 HOH HOH A . E 3 HOH 23 623 23 HOH HOH A . E 3 HOH 24 624 24 HOH HOH A . E 3 HOH 25 625 25 HOH HOH A . E 3 HOH 26 626 26 HOH HOH A . E 3 HOH 27 627 27 HOH HOH A . E 3 HOH 28 628 28 HOH HOH A . E 3 HOH 29 629 29 HOH HOH A . E 3 HOH 30 630 30 HOH HOH A . E 3 HOH 31 631 31 HOH HOH A . E 3 HOH 32 632 32 HOH HOH A . E 3 HOH 33 633 33 HOH HOH A . E 3 HOH 34 634 34 HOH HOH A . E 3 HOH 35 635 35 HOH HOH A . E 3 HOH 36 636 36 HOH HOH A . E 3 HOH 37 637 37 HOH HOH A . E 3 HOH 38 638 38 HOH HOH A . E 3 HOH 39 639 39 HOH HOH A . E 3 HOH 40 640 40 HOH HOH A . E 3 HOH 41 641 41 HOH HOH A . E 3 HOH 42 642 42 HOH HOH A . E 3 HOH 43 643 43 HOH HOH A . E 3 HOH 44 644 44 HOH HOH A . E 3 HOH 45 645 45 HOH HOH A . E 3 HOH 46 646 46 HOH HOH A . E 3 HOH 47 647 47 HOH HOH A . E 3 HOH 48 648 48 HOH HOH A . E 3 HOH 49 649 49 HOH HOH A . E 3 HOH 50 650 50 HOH HOH A . E 3 HOH 51 651 51 HOH HOH A . E 3 HOH 52 652 52 HOH HOH A . E 3 HOH 53 653 53 HOH HOH A . E 3 HOH 54 654 54 HOH HOH A . E 3 HOH 55 655 55 HOH HOH A . E 3 HOH 56 656 56 HOH HOH A . E 3 HOH 57 657 57 HOH HOH A . E 3 HOH 58 658 58 HOH HOH A . E 3 HOH 59 659 59 HOH HOH A . E 3 HOH 60 660 60 HOH HOH A . E 3 HOH 61 661 61 HOH HOH A . E 3 HOH 62 662 62 HOH HOH A . E 3 HOH 63 663 63 HOH HOH A . E 3 HOH 64 664 64 HOH HOH A . E 3 HOH 65 665 65 HOH HOH A . E 3 HOH 66 666 66 HOH HOH A . E 3 HOH 67 667 67 HOH HOH A . E 3 HOH 68 668 68 HOH HOH A . E 3 HOH 69 669 69 HOH HOH A . E 3 HOH 70 670 70 HOH HOH A . E 3 HOH 71 671 71 HOH HOH A . E 3 HOH 72 672 72 HOH HOH A . E 3 HOH 73 673 73 HOH HOH A . E 3 HOH 74 674 74 HOH HOH A . E 3 HOH 75 675 75 HOH HOH A . E 3 HOH 76 676 76 HOH HOH A . E 3 HOH 77 677 77 HOH HOH A . E 3 HOH 78 678 78 HOH HOH A . E 3 HOH 79 679 79 HOH HOH A . E 3 HOH 80 680 80 HOH HOH A . E 3 HOH 81 681 81 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 10_555 -y,-x,-z+1/6 0.5000000000 -0.8660254038 0.0000000000 0.0000000000 -0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 54.6238333333 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-09-18 2 'Structure model' 1 1 2017-11-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 2 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # loop_ _pdbx_refine_tls.pdbx_refine_id _pdbx_refine_tls.id _pdbx_refine_tls.details _pdbx_refine_tls.method _pdbx_refine_tls.origin_x _pdbx_refine_tls.origin_y _pdbx_refine_tls.origin_z _pdbx_refine_tls.T[1][1] _pdbx_refine_tls.T[2][2] _pdbx_refine_tls.T[3][3] _pdbx_refine_tls.T[1][2] _pdbx_refine_tls.T[1][3] _pdbx_refine_tls.T[2][3] _pdbx_refine_tls.L[1][1] _pdbx_refine_tls.L[2][2] _pdbx_refine_tls.L[3][3] _pdbx_refine_tls.L[1][2] _pdbx_refine_tls.L[1][3] _pdbx_refine_tls.L[2][3] _pdbx_refine_tls.S[1][1] _pdbx_refine_tls.S[2][2] _pdbx_refine_tls.S[3][3] _pdbx_refine_tls.S[1][2] _pdbx_refine_tls.S[1][3] _pdbx_refine_tls.S[2][3] _pdbx_refine_tls.S[2][1] _pdbx_refine_tls.S[3][1] _pdbx_refine_tls.S[3][2] 'X-RAY DIFFRACTION' 1 ? refined -21.7931 28.0210 15.0521 0.0420 0.3830 0.1813 0.0408 0.0329 0.2466 2.4762 1.8348 2.9718 0.8821 -0.3051 -1.2881 -0.0589 -0.0615 0.1204 0.3139 0.3615 0.0994 0.1611 -0.1474 0.4372 'X-RAY DIFFRACTION' 2 ? refined -19.1767 17.4550 0.4320 0.1179 0.5693 0.2183 0.1077 0.0563 0.1567 3.9563 2.0104 3.4438 1.9958 0.3089 -0.1980 -0.0606 0.0053 0.0553 0.5644 -0.3754 -0.2836 -0.3226 0.3898 0.4209 # loop_ _pdbx_refine_tls_group.pdbx_refine_id _pdbx_refine_tls_group.id _pdbx_refine_tls_group.refine_tls_id _pdbx_refine_tls_group.beg_auth_asym_id _pdbx_refine_tls_group.beg_auth_seq_id _pdbx_refine_tls_group.end_auth_asym_id _pdbx_refine_tls_group.end_auth_seq_id _pdbx_refine_tls_group.selection_details _pdbx_refine_tls_group.beg_label_asym_id _pdbx_refine_tls_group.beg_label_seq_id _pdbx_refine_tls_group.end_label_asym_id _pdbx_refine_tls_group.end_label_seq_id _pdbx_refine_tls_group.selection 'X-RAY DIFFRACTION' 1 1 A 1 A 137 ? . . . . ? 'X-RAY DIFFRACTION' 2 1 A 204 A 276 ? . . . . ? 'X-RAY DIFFRACTION' 3 2 A 138 A 203 ? . . . . ? # _phasing.method MR # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 SCALEPACK . ? program 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling' http://www.hkl-xray.com/ ? ? 2 MOLREP . ? program 'Alexei Vaguine' alexei@ysbl.york.ac.uk phasing http://www.ccp4.ac.uk/dist/html/molrep.html Fortran_77 ? 3 REFMAC 5.7.0032 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 4 PDB_EXTRACT 3.11 'April 22, 2011' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 5 HKL-2000 . ? ? ? ? 'data reduction' ? ? ? 6 HKL-2000 . ? ? ? ? 'data scaling' ? ? ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 PRO A 73 ? ? -67.94 5.01 2 1 LYS A 98 ? ? 39.48 62.00 3 1 SER A 105 ? ? 55.29 -120.61 4 1 ASN A 133 ? ? -147.78 40.45 5 1 VAL A 140 ? ? -118.46 66.84 6 1 TRP A 256 ? ? -118.46 71.54 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ASN 142 ? A ASN 142 2 1 Y 1 A ARG 143 ? A ARG 143 3 1 Y 1 A ASP 277 ? A ASP 277 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 water HOH #