HEADER CELL ADHESION 30-JUL-13 4LXO TITLE CRYSTAL STRUCTURE OF 9,10FN3-ELEGANTIN CHIMERA COMPND MOL_ID: 1; COMPND 2 MOLECULE: FIBRONECTIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: FN, COLD-INSOLUBLE GLOBULIN, CIG, ANASTELLIN, UGL-Y1, UGL- COMPND 5 Y2, UGL-Y3; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FN1, FN; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL-21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-21A KEYWDS FIBRONECTIN TYPE III DOMAIN, CELL BINDING, INTEGRIN ALPHA5BETA1, CELL KEYWDS 2 ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR Y.S.CHANG,J.H.SHIU,W.J.CHUANG REVDAT 2 08-NOV-23 4LXO 1 REMARK SEQADV LINK REVDAT 1 06-AUG-14 4LXO 0 JRNL AUTH Y.S.CHANG,J.H.SHIU,W.J.CHUANG JRNL TITL DESIGN, STRUCTURE DETERMINATION, AND BIOLOGICAL EVALUATION JRNL TITL 2 OF POTENT INTEGRIN ALPHA5BETA1-SPECIFIC ANTAGONIST USING THE JRNL TITL 3 NINTH AND TENTH MODULE OF FIBRONECTIN TYPE III DOMAIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.42 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0109 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.42 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.40 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 90292 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.164 REMARK 3 R VALUE (WORKING SET) : 0.163 REMARK 3 FREE R VALUE : 0.193 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4767 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.42 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.50 REMARK 3 REFLECTION IN BIN (WORKING SET) : 13014 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.72 REMARK 3 BIN R VALUE (WORKING SET) : 0.2160 REMARK 3 BIN FREE R VALUE SET COUNT : 657 REMARK 3 BIN FREE R VALUE : 0.2570 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2828 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 504 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.74000 REMARK 3 B22 (A**2) : 0.74000 REMARK 3 B33 (A**2) : -1.48000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.055 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.054 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.028 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.560 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.968 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.957 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2902 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3980 ; 1.653 ; 1.957 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 366 ; 7.384 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 122 ;35.130 ;22.295 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 428 ;12.345 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;22.327 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 458 ; 0.124 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2248 ; 0.011 ; 0.022 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1844 ; 2.456 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3032 ; 3.746 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1058 ; 4.795 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 948 ; 6.888 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 2902 ; 2.479 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1326 A 1509 REMARK 3 RESIDUE RANGE : A 1601 A 1601 REMARK 3 RESIDUE RANGE : A 1701 A 1980 REMARK 3 ORIGIN FOR THE GROUP (A): -18.486 3.058 -26.678 REMARK 3 T TENSOR REMARK 3 T11: 0.0784 T22: 0.0061 REMARK 3 T33: 0.0359 T12: 0.0119 REMARK 3 T13: -0.0049 T23: 0.0069 REMARK 3 L TENSOR REMARK 3 L11: 0.6462 L22: 0.1403 REMARK 3 L33: 1.2987 L12: 0.1441 REMARK 3 L13: 0.4504 L23: 0.0927 REMARK 3 S TENSOR REMARK 3 S11: -0.0493 S12: 0.0039 S13: 0.0704 REMARK 3 S21: 0.0070 S22: 0.0099 S23: 0.0179 REMARK 3 S31: -0.1946 S32: 0.0145 S33: 0.0394 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1326 B 1509 REMARK 3 RESIDUE RANGE : B 1601 B 1601 REMARK 3 RESIDUE RANGE : B 1701 B 1924 REMARK 3 ORIGIN FOR THE GROUP (A): -14.136 -13.270 -24.867 REMARK 3 T TENSOR REMARK 3 T11: 0.0423 T22: 0.0125 REMARK 3 T33: 0.0295 T12: 0.0153 REMARK 3 T13: 0.0190 T23: 0.0014 REMARK 3 L TENSOR REMARK 3 L11: 0.9229 L22: 0.5488 REMARK 3 L33: 0.8433 L12: 0.1514 REMARK 3 L13: 0.2899 L23: -0.1163 REMARK 3 S TENSOR REMARK 3 S11: 0.0125 S12: 0.0650 S13: -0.0906 REMARK 3 S21: 0.0139 S22: 0.0003 S23: -0.0506 REMARK 3 S31: 0.0301 S32: 0.0762 S33: -0.0129 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4LXO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 05-AUG-13. REMARK 100 THE DEPOSITION ID IS D_1000081215. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 03-OCT-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSRRC REMARK 200 BEAMLINE : BL13B1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1,0000 REMARK 200 MONOCHROMATOR : LN2-COOLED FIXED-EXIT DOUBLE REMARK 200 CRYSTAL SI(111) MONOCHROMATOR REMARK 200 OPTICS : VERTICALLY COLLIMATING REMARK 200 PREMIRROR, TOROIDAL FOCUSING REMARK 200 MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 95355 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.420 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.4 REMARK 200 DATA REDUNDANCY : 7.800 REMARK 200 R MERGE (I) : 0.03600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 49.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.42 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.47 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.7 REMARK 200 DATA REDUNDANCY IN SHELL : 7.60 REMARK 200 R MERGE FOR SHELL (I) : 0.43600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 1FNF REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M CALCIUM ACETATE, 7%(W/V) REMARK 280 PEG10000, PH 7.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 87.94000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 37.55750 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 37.55750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 131.91000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 37.55750 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 37.55750 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 43.97000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 37.55750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 37.55750 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 131.91000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 37.55750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 37.55750 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 43.97000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 87.94000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1319 REMARK 465 HIS A 1320 REMARK 465 HIS A 1321 REMARK 465 HIS A 1322 REMARK 465 HIS A 1323 REMARK 465 HIS A 1324 REMARK 465 HIS A 1325 REMARK 465 MET B 1319 REMARK 465 HIS B 1320 REMARK 465 HIS B 1321 REMARK 465 HIS B 1322 REMARK 465 HIS B 1323 REMARK 465 HIS B 1324 REMARK 465 HIS B 1325 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1735 O HOH A 1951 1.45 REMARK 500 O HOH A 1757 O HOH A 1972 1.56 REMARK 500 O HOH A 1925 O HOH A 1968 1.60 REMARK 500 O HOH B 1702 O HOH B 1901 1.74 REMARK 500 O HOH A 1707 O HOH A 1953 1.78 REMARK 500 O HOH B 1714 O HOH B 1924 1.78 REMARK 500 O SER A 1458 O HOH A 1855 1.79 REMARK 500 NH1 ARG A 1421 O HOH A 1943 1.83 REMARK 500 O HOH B 1904 O HOH B 1917 1.92 REMARK 500 O HOH A 1705 O HOH B 1912 1.94 REMARK 500 O ASN A 1496 O HOH A 1915 1.95 REMARK 500 OG SER B 1458 O HOH B 1769 1.95 REMARK 500 O HOH B 1894 O HOH B 1897 1.96 REMARK 500 O HOH A 1774 O HOH A 1957 1.98 REMARK 500 O HOH A 1929 O HOH B 1911 1.99 REMARK 500 O HOH A 1965 O HOH B 1787 2.01 REMARK 500 O HOH A 1723 O HOH A 1913 2.02 REMARK 500 O HOH A 1977 O HOH B 1899 2.04 REMARK 500 O HOH A 1939 O HOH A 1954 2.04 REMARK 500 O HOH A 1960 O HOH A 1970 2.07 REMARK 500 O HOH A 1891 O HOH A 1944 2.08 REMARK 500 O HOH A 1767 O HOH A 1803 2.09 REMARK 500 O HOH B 1867 O HOH B 1872 2.11 REMARK 500 NH1 ARG A 1421 O HOH A 1941 2.11 REMARK 500 O HOH A 1806 O HOH B 1902 2.15 REMARK 500 C ASN A 1496 O HOH A 1915 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1970 O HOH B 1917 5454 1.92 REMARK 500 O HOH A 1956 O HOH B 1896 5454 1.93 REMARK 500 O HOH A 1959 O HOH B 1851 5454 1.94 REMARK 500 O HOH A 1723 O HOH B 1860 5454 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A1434 CB - CG - CD2 ANGL. DEV. = 20.8 DEGREES REMARK 500 ARG B1421 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A1365 -10.36 75.79 REMARK 500 ALA A1441 49.74 -85.35 REMARK 500 ASN A1457 5.26 -65.59 REMARK 500 PRO A1497 144.99 -13.57 REMARK 500 HIS B1365 -13.25 76.97 REMARK 500 ALA B1441 48.01 -83.54 REMARK 500 SER B1470 52.11 -93.21 REMARK 500 ALA B1492 50.37 36.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ASN A 1496 PRO A 1497 149.70 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A1601 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A1364 OE1 REMARK 620 2 GLU A1364 OE2 53.3 REMARK 620 3 GLU A1392 OE1 82.8 85.0 REMARK 620 4 TRP B1437 O 158.8 147.6 100.1 REMARK 620 5 ASP B1438 OD1 79.9 133.2 91.3 79.0 REMARK 620 6 HOH B1718 O 128.5 75.2 95.5 72.4 151.4 REMARK 620 7 HOH B1848 O 92.3 91.5 175.0 84.8 88.5 87.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B1601 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TRP A1437 O REMARK 620 2 ASP A1438 OD1 78.3 REMARK 620 3 HOH A1705 O 84.8 87.7 REMARK 620 4 HOH A1708 O 73.4 151.7 88.7 REMARK 620 5 GLU B1364 OE1 158.4 80.1 92.4 128.0 REMARK 620 6 GLU B1364 OE2 148.7 132.6 90.6 75.5 52.6 REMARK 620 7 GLU B1392 OE1 99.4 91.2 175.3 94.5 82.9 86.8 REMARK 620 N 1 2 3 4 5 6 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 1601 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4LXN RELATED DB: PDB DBREF 4LXO A 1326 1509 UNP P02751 FINC_HUMAN 1357 1540 DBREF 4LXO B 1326 1509 UNP P02751 FINC_HUMAN 1357 1540 SEQADV 4LXO MET A 1319 UNP P02751 EXPRESSION TAG SEQADV 4LXO HIS A 1320 UNP P02751 EXPRESSION TAG SEQADV 4LXO HIS A 1321 UNP P02751 EXPRESSION TAG SEQADV 4LXO HIS A 1322 UNP P02751 EXPRESSION TAG SEQADV 4LXO HIS A 1323 UNP P02751 EXPRESSION TAG SEQADV 4LXO HIS A 1324 UNP P02751 EXPRESSION TAG SEQADV 4LXO HIS A 1325 UNP P02751 EXPRESSION TAG SEQADV 4LXO PRO A 1408 UNP P02751 LEU 1439 ENGINEERED MUTATION SEQADV 4LXO CYS A 1490 UNP P02751 VAL 1521 ENGINEERED MUTATION SEQADV 4LXO ARG A 1491 UNP P02751 THR 1522 ENGINEERED MUTATION SEQADV 4LXO ALA A 1492 UNP P02751 GLY 1523 ENGINEERED MUTATION SEQADV 4LXO ASN A 1496 UNP P02751 SER 1527 ENGINEERED MUTATION SEQADV 4LXO ASP A 1498 UNP P02751 ALA 1529 ENGINEERED MUTATION SEQADV 4LXO CYS A 1499 UNP P02751 SER 1530 ENGINEERED MUTATION SEQADV 4LXO MET B 1319 UNP P02751 EXPRESSION TAG SEQADV 4LXO HIS B 1320 UNP P02751 EXPRESSION TAG SEQADV 4LXO HIS B 1321 UNP P02751 EXPRESSION TAG SEQADV 4LXO HIS B 1322 UNP P02751 EXPRESSION TAG SEQADV 4LXO HIS B 1323 UNP P02751 EXPRESSION TAG SEQADV 4LXO HIS B 1324 UNP P02751 EXPRESSION TAG SEQADV 4LXO HIS B 1325 UNP P02751 EXPRESSION TAG SEQADV 4LXO PRO B 1408 UNP P02751 LEU 1439 ENGINEERED MUTATION SEQADV 4LXO CYS B 1490 UNP P02751 VAL 1521 ENGINEERED MUTATION SEQADV 4LXO ARG B 1491 UNP P02751 THR 1522 ENGINEERED MUTATION SEQADV 4LXO ALA B 1492 UNP P02751 GLY 1523 ENGINEERED MUTATION SEQADV 4LXO ASN B 1496 UNP P02751 SER 1527 ENGINEERED MUTATION SEQADV 4LXO ASP B 1498 UNP P02751 ALA 1529 ENGINEERED MUTATION SEQADV 4LXO CYS B 1499 UNP P02751 SER 1530 ENGINEERED MUTATION SEQRES 1 A 191 MET HIS HIS HIS HIS HIS HIS GLY LEU ASP SER PRO THR SEQRES 2 A 191 GLY ILE ASP PHE SER ASP ILE THR ALA ASN SER PHE THR SEQRES 3 A 191 VAL HIS TRP ILE ALA PRO ARG ALA THR ILE THR GLY TYR SEQRES 4 A 191 ARG ILE ARG HIS HIS PRO GLU HIS PHE SER GLY ARG PRO SEQRES 5 A 191 ARG GLU ASP ARG VAL PRO HIS SER ARG ASN SER ILE THR SEQRES 6 A 191 LEU THR ASN LEU THR PRO GLY THR GLU TYR VAL VAL SER SEQRES 7 A 191 ILE VAL ALA LEU ASN GLY ARG GLU GLU SER PRO PRO LEU SEQRES 8 A 191 ILE GLY GLN GLN SER THR VAL SER ASP VAL PRO ARG ASP SEQRES 9 A 191 LEU GLU VAL VAL ALA ALA THR PRO THR SER LEU LEU ILE SEQRES 10 A 191 SER TRP ASP ALA PRO ALA VAL THR VAL ARG TYR TYR ARG SEQRES 11 A 191 ILE THR TYR GLY GLU THR GLY GLY ASN SER PRO VAL GLN SEQRES 12 A 191 GLU PHE THR VAL PRO GLY SER LYS SER THR ALA THR ILE SEQRES 13 A 191 SER GLY LEU LYS PRO GLY VAL ASP TYR THR ILE THR VAL SEQRES 14 A 191 TYR ALA CYS ARG ALA ARG GLY ASP ASN PRO ASP CYS SER SEQRES 15 A 191 LYS PRO ILE SER ILE ASN TYR ARG THR SEQRES 1 B 191 MET HIS HIS HIS HIS HIS HIS GLY LEU ASP SER PRO THR SEQRES 2 B 191 GLY ILE ASP PHE SER ASP ILE THR ALA ASN SER PHE THR SEQRES 3 B 191 VAL HIS TRP ILE ALA PRO ARG ALA THR ILE THR GLY TYR SEQRES 4 B 191 ARG ILE ARG HIS HIS PRO GLU HIS PHE SER GLY ARG PRO SEQRES 5 B 191 ARG GLU ASP ARG VAL PRO HIS SER ARG ASN SER ILE THR SEQRES 6 B 191 LEU THR ASN LEU THR PRO GLY THR GLU TYR VAL VAL SER SEQRES 7 B 191 ILE VAL ALA LEU ASN GLY ARG GLU GLU SER PRO PRO LEU SEQRES 8 B 191 ILE GLY GLN GLN SER THR VAL SER ASP VAL PRO ARG ASP SEQRES 9 B 191 LEU GLU VAL VAL ALA ALA THR PRO THR SER LEU LEU ILE SEQRES 10 B 191 SER TRP ASP ALA PRO ALA VAL THR VAL ARG TYR TYR ARG SEQRES 11 B 191 ILE THR TYR GLY GLU THR GLY GLY ASN SER PRO VAL GLN SEQRES 12 B 191 GLU PHE THR VAL PRO GLY SER LYS SER THR ALA THR ILE SEQRES 13 B 191 SER GLY LEU LYS PRO GLY VAL ASP TYR THR ILE THR VAL SEQRES 14 B 191 TYR ALA CYS ARG ALA ARG GLY ASP ASN PRO ASP CYS SER SEQRES 15 B 191 LYS PRO ILE SER ILE ASN TYR ARG THR HET CA A1601 1 HET CA B1601 1 HETNAM CA CALCIUM ION FORMUL 3 CA 2(CA 2+) FORMUL 5 HOH *504(H2 O) SHEET 1 A 3 THR A1331 SER A1336 0 SHEET 2 A 3 PHE A1343 ILE A1348 -1 O THR A1344 N SER A1336 SHEET 3 A 3 SER A1381 LEU A1384 -1 O ILE A1382 N VAL A1345 SHEET 1 B 4 ARG A1371 VAL A1375 0 SHEET 2 B 4 GLY A1356 PRO A1363 -1 N ILE A1359 O ASP A1373 SHEET 3 B 4 GLU A1392 ASN A1401 -1 O VAL A1394 N HIS A1362 SHEET 4 B 4 GLU A1404 GLU A1405 -1 O GLU A1404 N ASN A1401 SHEET 1 C 4 ARG A1371 VAL A1375 0 SHEET 2 C 4 GLY A1356 PRO A1363 -1 N ILE A1359 O ASP A1373 SHEET 3 C 4 GLU A1392 ASN A1401 -1 O VAL A1394 N HIS A1362 SHEET 4 C 4 LEU A1409 SER A1414 -1 O GLY A1411 N VAL A1395 SHEET 1 D 3 ARG A1421 THR A1429 0 SHEET 2 D 3 SER A1432 ASP A1438 -1 O LEU A1434 N ALA A1427 SHEET 3 D 3 THR A1471 ILE A1474 -1 O ILE A1474 N LEU A1433 SHEET 1 E 4 GLN A1461 PRO A1466 0 SHEET 2 E 4 TYR A1446 GLU A1453 -1 N ILE A1449 O PHE A1463 SHEET 3 E 4 ASP A1482 ARG A1491 -1 O CYS A1490 N TYR A1446 SHEET 4 E 4 ASP A1498 CYS A1499 -1 O ASP A1498 N ARG A1491 SHEET 1 F 4 GLN A1461 PRO A1466 0 SHEET 2 F 4 TYR A1446 GLU A1453 -1 N ILE A1449 O PHE A1463 SHEET 3 F 4 ASP A1482 ARG A1491 -1 O CYS A1490 N TYR A1446 SHEET 4 F 4 ILE A1503 ARG A1508 -1 O TYR A1507 N TYR A1483 SHEET 1 G 3 THR B1331 SER B1336 0 SHEET 2 G 3 PHE B1343 ILE B1348 -1 O THR B1344 N SER B1336 SHEET 3 G 3 SER B1381 LEU B1384 -1 O ILE B1382 N VAL B1345 SHEET 1 H 4 ARG B1371 PRO B1376 0 SHEET 2 H 4 GLY B1356 PRO B1363 -1 N ILE B1359 O ASP B1373 SHEET 3 H 4 GLU B1392 ASN B1401 -1 O LEU B1400 N GLY B1356 SHEET 4 H 4 GLU B1404 GLU B1405 -1 O GLU B1404 N ASN B1401 SHEET 1 I 4 ARG B1371 PRO B1376 0 SHEET 2 I 4 GLY B1356 PRO B1363 -1 N ILE B1359 O ASP B1373 SHEET 3 I 4 GLU B1392 ASN B1401 -1 O LEU B1400 N GLY B1356 SHEET 4 I 4 LEU B1409 SER B1414 -1 O GLN B1413 N TYR B1393 SHEET 1 J 3 ARG B1421 THR B1429 0 SHEET 2 J 3 SER B1432 ASP B1438 -1 O LEU B1434 N ALA B1427 SHEET 3 J 3 THR B1471 ILE B1474 -1 O ILE B1474 N LEU B1433 SHEET 1 K 4 GLN B1461 PRO B1466 0 SHEET 2 K 4 TYR B1446 GLU B1453 -1 N ILE B1449 O PHE B1463 SHEET 3 K 4 TYR B1483 CYS B1490 -1 O THR B1484 N GLY B1452 SHEET 4 K 4 ILE B1503 TYR B1507 -1 O TYR B1507 N TYR B1483 SSBOND 1 CYS A 1490 CYS A 1499 1555 1555 2.13 SSBOND 2 CYS B 1490 CYS B 1499 1555 1555 2.08 LINK OE1 GLU A1364 CA CA A1601 1555 1555 2.36 LINK OE2 GLU A1364 CA CA A1601 1555 1555 2.45 LINK OE1 GLU A1392 CA CA A1601 1555 1555 2.30 LINK O TRP A1437 CA CA B1601 1555 1555 2.43 LINK OD1 ASP A1438 CA CA B1601 1555 1555 2.30 LINK CA CA A1601 O TRP B1437 1555 1555 2.39 LINK CA CA A1601 OD1 ASP B1438 1555 1555 2.33 LINK CA CA A1601 O HOH B1718 1555 1555 2.44 LINK CA CA A1601 O HOH B1848 1555 1555 2.40 LINK O HOH A1705 CA CA B1601 1555 1555 2.40 LINK O HOH A1708 CA CA B1601 1555 1555 2.42 LINK OE1 GLU B1364 CA CA B1601 1555 1555 2.42 LINK OE2 GLU B1364 CA CA B1601 1555 1555 2.48 LINK OE1 GLU B1392 CA CA B1601 1555 1555 2.30 SITE 1 AC1 6 GLU A1364 GLU A1392 TRP B1437 ASP B1438 SITE 2 AC1 6 HOH B1718 HOH B1848 SITE 1 AC2 6 TRP A1437 ASP A1438 HOH A1705 HOH A1708 SITE 2 AC2 6 GLU B1364 GLU B1392 CRYST1 75.115 75.115 175.880 90.00 90.00 90.00 P 43 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013313 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013313 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005686 0.00000