HEADER TRANSFERASE 30-JUL-13 4LXY TITLE CRYSTAL STRUCTURE WLARD, A SUGAR 3N-FORMYL TRANSFERASE IN THE PRESENCE TITLE 2 OF DTDP AND 10-N-FORMYL-THF COMPND MOL_ID: 1; COMPND 2 MOLECULE: WLARD, A SUGAR 3N-FORMYL TRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAMPYLOBACTER JEJUNI SUBSP. JEJUNI; SOURCE 3 ORGANISM_TAXID: 407148; SOURCE 4 STRAIN: 81116; SOURCE 5 GENE: C8J_1081; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA2(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28 KEYWDS FORMYLTRANSFERASE, FORMYLATION, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.B.THODEN,M.-F.GONEAU,M.GILBERT,H.M.HOLDEN REVDAT 3 20-SEP-23 4LXY 1 REMARK SEQADV REVDAT 2 05-FEB-14 4LXY 1 JRNL REVDAT 1 14-AUG-13 4LXY 0 JRNL AUTH J.B.THODEN,M.F.GONEAU,M.GILBERT,H.M.HOLDEN JRNL TITL STRUCTURE OF A SUGAR N-FORMYLTRANSFERASE FROM CAMPYLOBACTER JRNL TITL 2 JEJUNI. JRNL REF BIOCHEMISTRY V. 52 6114 2013 JRNL REFN ISSN 0006-2960 JRNL PMID 23898784 JRNL DOI 10.1021/BI4009006 REMARK 2 REMARK 2 RESOLUTION. 1.64 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.64 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.21 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 3 NUMBER OF REFLECTIONS : 88820 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4704 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.64 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.68 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5555 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 81.60 REMARK 3 BIN R VALUE (WORKING SET) : 0.3170 REMARK 3 BIN FREE R VALUE SET COUNT : 296 REMARK 3 BIN FREE R VALUE : 0.3230 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4489 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 144 REMARK 3 SOLVENT ATOMS : 795 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.84 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.15000 REMARK 3 B22 (A**2) : 1.22000 REMARK 3 B33 (A**2) : -1.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.29000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.092 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.095 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.074 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.257 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.956 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4811 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4630 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6524 ; 2.078 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10660 ; 0.908 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 570 ; 7.817 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 244 ;38.809 ;25.738 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 877 ;13.723 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;14.107 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 719 ; 0.131 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5443 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1172 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4LXY COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-AUG-13. REMARK 100 THE DEPOSITION ID IS D_1000081225. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-MAY-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : MONTEL MIRRORS REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : BRUKER PLATINUM 135 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : APEX REMARK 200 DATA SCALING SOFTWARE : APEX REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 93525 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.640 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : 0.05800 REMARK 200 FOR THE DATA SET : 14.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.64 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 86.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : 0.36400 REMARK 200 R SYM FOR SHELL (I) : 0.36400 REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4LXQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 11-15% PEG 8000, 200 MM NACL, 5 MM REMARK 280 TDP, 5 MM N-5-FORMYL-THF, PH 7, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 48.16850 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.92900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 48.16850 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 32.92900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: COMPOSED OF CHAINS A+B REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4580 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -20.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 LEU A 272 REMARK 465 LYS B 271 REMARK 465 LEU B 272 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 565 O HOH A 700 1.76 REMARK 500 O HOH B 528 O HOH B 638 1.79 REMARK 500 O HOH B 566 O HOH B 812 1.83 REMARK 500 O HOH B 532 O HOH B 573 1.95 REMARK 500 OD1 ASP B 63 O HOH B 547 1.96 REMARK 500 O HOH A 424 O HOH A 751 1.97 REMARK 500 O HOH B 510 O HOH B 660 2.00 REMARK 500 O HOH A 603 O HOH A 776 2.00 REMARK 500 O HOH B 505 O HOH B 535 2.00 REMARK 500 O HOH A 582 O HOH A 663 2.00 REMARK 500 O HOH A 419 O HOH A 664 2.01 REMARK 500 O HOH B 582 O HOH B 782 2.01 REMARK 500 O HOH B 647 O HOH B 805 2.04 REMARK 500 O HOH A 763 O HOH B 548 2.04 REMARK 500 O HOH B 519 O HOH B 800 2.06 REMARK 500 O HOH B 598 O HOH B 624 2.07 REMARK 500 O HOH B 704 O HOH B 705 2.08 REMARK 500 O HOH A 764 O HOH B 689 2.09 REMARK 500 O1B TYD A 302 O HOH A 640 2.09 REMARK 500 O HOH A 654 O HOH A 655 2.11 REMARK 500 O HOH B 582 O HOH B 781 2.11 REMARK 500 O HOH A 675 O HOH A 772 2.12 REMARK 500 O HOH A 685 O HOH A 716 2.12 REMARK 500 O HOH B 556 O HOH B 650 2.14 REMARK 500 O HOH A 476 O HOH A 730 2.16 REMARK 500 OD1 ASN B 174 OG SER B 176 2.17 REMARK 500 O HOH A 511 O HOH A 732 2.17 REMARK 500 OE1 GLU A 77 O HOH A 640 2.17 REMARK 500 O HOH B 580 O HOH B 746 2.18 REMARK 500 O HOH A 509 O HOH A 723 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 138 CB - CG - OD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 10 -178.40 75.79 REMARK 500 TYR A 24 -55.06 -127.93 REMARK 500 SER A 43 -131.55 -142.36 REMARK 500 SER A 43 -132.75 -141.96 REMARK 500 ARG A 91 72.25 -102.58 REMARK 500 SER A 120 -158.32 -133.84 REMARK 500 ASN A 186 -3.01 64.53 REMARK 500 PHE A 219 80.83 -157.25 REMARK 500 ASN A 229 10.18 57.97 REMARK 500 ASN B 10 -174.75 74.47 REMARK 500 TYR B 24 -42.50 -135.42 REMARK 500 SER B 43 -126.52 -145.00 REMARK 500 SER B 43 -129.13 -142.69 REMARK 500 SER B 120 -159.89 -140.09 REMARK 500 ASN B 186 -1.14 75.44 REMARK 500 PHE B 219 83.04 -159.42 REMARK 500 ASN B 228 54.61 37.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1YA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TYD A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPO A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1YA B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TYD B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPO B 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4LXQ RELATED DB: PDB REMARK 900 SAME PROTEIN IN COMPLEX WITH DTPD AND 5-N-FORMYL-THF REMARK 900 RELATED ID: 4LXT RELATED DB: PDB REMARK 900 SAME PROTEIN IN COMPLEX WITH DTPD-QUI3N AND 5-N-FORMYL-THF REMARK 900 RELATED ID: 4LXU RELATED DB: PDB REMARK 900 SAME PROTEIN IN COMPLEX WITH DTPD-FUC3N AND 5-N-FORMYL-THF REMARK 900 RELATED ID: 4LXX RELATED DB: PDB REMARK 900 SAME PROTEIN IN COMPLEX WITH DTPD-FUC3NFO AND 5-N-FORMYL-THF DBREF 4LXY A 1 272 UNP A8FMJ3 A8FMJ3_CAMJ8 1 272 DBREF 4LXY B 1 272 UNP A8FMJ3 A8FMJ3_CAMJ8 1 272 SEQADV 4LXY GLY A -1 UNP A8FMJ3 EXPRESSION TAG SEQADV 4LXY HIS A 0 UNP A8FMJ3 EXPRESSION TAG SEQADV 4LXY GLY B -1 UNP A8FMJ3 EXPRESSION TAG SEQADV 4LXY HIS B 0 UNP A8FMJ3 EXPRESSION TAG SEQRES 1 A 274 GLY HIS MET ILE LYS ILE CYS ILE ALA GLY LYS ASN ASN SEQRES 2 A 274 ILE ALA VAL ASN SER LEU GLN PHE ILE LEU LYS ASN TYR SEQRES 3 A 274 PHE GLU ALA ASP GLN ILE VAL VAL ILE PRO ASN LYS ASN SEQRES 4 A 274 ASP LYS GLY ILE ASP SER TRP GLN LYS SER LEU LEU LYS SEQRES 5 A 274 PHE ALA LEU ASP ASN ASN ILE LYS ILE VAL THR LEU ASP SEQRES 6 A 274 GLU ILE TYR ASN ILE GLU GLN ILE ILE PHE PHE SER LEU SEQRES 7 A 274 GLU PHE ASP GLN ILE ILE LYS ILE GLU ASN PHE LYS SER SEQRES 8 A 274 ASP ARG LEU PHE ASN ILE HIS PHE SER ALA LEU PRO LYS SEQRES 9 A 274 TYR LYS GLY VAL PHE THR SER ILE THR PRO ILE LEU ASN SEQRES 10 A 274 ASN GLU LEU GLU SER GLY VAL THR LEU HIS ARG ILE ASP SEQRES 11 A 274 ASN GLY ILE ASP THR GLY ASN ILE ILE ASP GLN HIS CYS SEQRES 12 A 274 PHE PRO ILE ASP ILE ASN ASP THR ALA ARG ASP LEU TYR SEQRES 13 A 274 PHE ASN TYR LEU LYS TYR GLY GLU SER ILE PHE LYS LYS SEQRES 14 A 274 ASN ILE GLN THR ILE ILE ASN ASN SER TYR LYS ASP LEU SEQRES 15 A 274 LYS GLN THR ASN ILE ASN SER SER TYR PHE SER ARG LYS SEQRES 16 A 274 ASP ILE ASN LEU VAL HIS LYS ILE ASN PHE LYS LYS THR SEQRES 17 A 274 SER PHE GLU ILE HIS ASN GLN ILE ARG ALA PHE ILE PHE SEQRES 18 A 274 GLN GLU TYR GLN LEU PRO ILE ILE ASN ASN SER LYS ILE SEQRES 19 A 274 ILE LYS SER ILE LEU ALA ASN GLU PHE ILE GLY TYR ASN SEQRES 20 A 274 VAL PHE GLU GLU PHE GLU ASN TYR PHE ILE ILE SER GLY SEQRES 21 A 274 ILE ASP GLY PHE LYS ILE ILE ALA GLN LYS LEU ASN LYS SEQRES 22 A 274 LEU SEQRES 1 B 274 GLY HIS MET ILE LYS ILE CYS ILE ALA GLY LYS ASN ASN SEQRES 2 B 274 ILE ALA VAL ASN SER LEU GLN PHE ILE LEU LYS ASN TYR SEQRES 3 B 274 PHE GLU ALA ASP GLN ILE VAL VAL ILE PRO ASN LYS ASN SEQRES 4 B 274 ASP LYS GLY ILE ASP SER TRP GLN LYS SER LEU LEU LYS SEQRES 5 B 274 PHE ALA LEU ASP ASN ASN ILE LYS ILE VAL THR LEU ASP SEQRES 6 B 274 GLU ILE TYR ASN ILE GLU GLN ILE ILE PHE PHE SER LEU SEQRES 7 B 274 GLU PHE ASP GLN ILE ILE LYS ILE GLU ASN PHE LYS SER SEQRES 8 B 274 ASP ARG LEU PHE ASN ILE HIS PHE SER ALA LEU PRO LYS SEQRES 9 B 274 TYR LYS GLY VAL PHE THR SER ILE THR PRO ILE LEU ASN SEQRES 10 B 274 ASN GLU LEU GLU SER GLY VAL THR LEU HIS ARG ILE ASP SEQRES 11 B 274 ASN GLY ILE ASP THR GLY ASN ILE ILE ASP GLN HIS CYS SEQRES 12 B 274 PHE PRO ILE ASP ILE ASN ASP THR ALA ARG ASP LEU TYR SEQRES 13 B 274 PHE ASN TYR LEU LYS TYR GLY GLU SER ILE PHE LYS LYS SEQRES 14 B 274 ASN ILE GLN THR ILE ILE ASN ASN SER TYR LYS ASP LEU SEQRES 15 B 274 LYS GLN THR ASN ILE ASN SER SER TYR PHE SER ARG LYS SEQRES 16 B 274 ASP ILE ASN LEU VAL HIS LYS ILE ASN PHE LYS LYS THR SEQRES 17 B 274 SER PHE GLU ILE HIS ASN GLN ILE ARG ALA PHE ILE PHE SEQRES 18 B 274 GLN GLU TYR GLN LEU PRO ILE ILE ASN ASN SER LYS ILE SEQRES 19 B 274 ILE LYS SER ILE LEU ALA ASN GLU PHE ILE GLY TYR ASN SEQRES 20 B 274 VAL PHE GLU GLU PHE GLU ASN TYR PHE ILE ILE SER GLY SEQRES 21 B 274 ILE ASP GLY PHE LYS ILE ILE ALA GLN LYS LEU ASN LYS SEQRES 22 B 274 LEU HET 1YA A 301 34 HET TYD A 302 25 HET MPO A 303 13 HET 1YA B 301 34 HET TYD B 302 25 HET MPO B 303 13 HETNAM 1YA N-{4-[{[(6S)-2-AMINO-4-OXO-3,4,5,6,7,8- HETNAM 2 1YA HEXAHYDROPTERIDIN-6-YL]METHYL}(FORMYL)AMINO]BENZOYL}- HETNAM 3 1YA L-GLUTAMIC ACID HETNAM TYD THYMIDINE-5'-DIPHOSPHATE HETNAM MPO 3[N-MORPHOLINO]PROPANE SULFONIC ACID FORMUL 3 1YA 2(C20 H23 N7 O7) FORMUL 4 TYD 2(C10 H16 N2 O11 P2) FORMUL 5 MPO 2(C7 H15 N O4 S) FORMUL 9 HOH *795(H2 O) HELIX 1 1 LYS A 9 TYR A 24 1 16 HELIX 2 2 GLU A 26 ASP A 28 5 3 HELIX 3 3 SER A 47 ASN A 55 1 9 HELIX 4 4 THR A 61 ILE A 65 5 5 HELIX 5 5 LYS A 83 PHE A 87 5 5 HELIX 6 6 ILE A 110 ASN A 115 1 6 HELIX 7 7 THR A 149 ASN A 174 1 26 HELIX 8 8 SER A 191 ILE A 195 5 5 HELIX 9 9 THR A 206 ALA A 216 1 11 HELIX 10 10 LYS B 9 TYR B 24 1 16 HELIX 11 11 GLU B 26 ASP B 28 5 3 HELIX 12 12 SER B 47 ASN B 55 1 9 HELIX 13 13 LYS B 83 PHE B 87 5 5 HELIX 14 14 ILE B 110 ASN B 115 1 6 HELIX 15 15 THR B 149 ASN B 174 1 26 HELIX 16 16 SER B 191 ILE B 195 5 5 HELIX 17 17 THR B 206 ALA B 216 1 11 SHEET 1 A 7 LYS A 58 ILE A 59 0 SHEET 2 A 7 ILE A 30 PRO A 34 1 N VAL A 32 O LYS A 58 SHEET 3 A 7 ILE A 4 GLY A 8 1 N ILE A 4 O VAL A 31 SHEET 4 A 7 ILE A 72 LEU A 76 1 O LEU A 76 N ALA A 7 SHEET 5 A 7 LEU A 92 HIS A 96 1 O PHE A 93 N SER A 75 SHEET 6 A 7 GLU A 119 ARG A 126 -1 O THR A 123 N HIS A 96 SHEET 7 A 7 ILE A 136 PRO A 143 -1 O ILE A 137 N LEU A 124 SHEET 1 B 2 LYS A 104 GLY A 105 0 SHEET 2 B 2 TYR A 189 PHE A 190 1 O PHE A 190 N LYS A 104 SHEET 1 C 5 ILE A 226 ILE A 227 0 SHEET 2 C 5 SER A 230 PHE A 241 -1 O SER A 230 N ILE A 227 SHEET 3 C 5 PHE A 262 LYS A 268 -1 O LYS A 263 N ALA A 238 SHEET 4 C 5 TYR A 253 ILE A 256 -1 N ILE A 256 O ILE A 264 SHEET 5 C 5 PHE A 247 GLU A 249 -1 N GLU A 248 O ILE A 255 SHEET 1 D 7 LYS B 58 ILE B 59 0 SHEET 2 D 7 ILE B 30 PRO B 34 1 N VAL B 32 O LYS B 58 SHEET 3 D 7 ILE B 4 GLY B 8 1 N ILE B 6 O VAL B 31 SHEET 4 D 7 ILE B 72 LEU B 76 1 O PHE B 74 N ALA B 7 SHEET 5 D 7 LEU B 92 HIS B 96 1 O PHE B 93 N PHE B 73 SHEET 6 D 7 GLU B 119 ARG B 126 -1 O THR B 123 N HIS B 96 SHEET 7 D 7 ILE B 136 PRO B 143 -1 O ILE B 137 N LEU B 124 SHEET 1 E 2 LYS B 104 GLY B 105 0 SHEET 2 E 2 TYR B 189 PHE B 190 1 O PHE B 190 N LYS B 104 SHEET 1 F 5 ILE B 226 ILE B 227 0 SHEET 2 F 5 SER B 230 PHE B 241 -1 O SER B 230 N ILE B 227 SHEET 3 F 5 PHE B 262 LYS B 268 -1 O GLN B 267 N LYS B 234 SHEET 4 F 5 TYR B 253 ILE B 256 -1 N ILE B 256 O ILE B 264 SHEET 5 F 5 PHE B 247 GLU B 249 -1 N GLU B 248 O ILE B 255 CISPEP 1 LEU A 100 PRO A 101 0 14.18 CISPEP 2 LEU B 100 PRO B 101 0 16.73 SITE 1 AC1 21 SER A 75 PHE A 78 ASP A 79 GLN A 80 SITE 2 AC1 21 ILE A 81 ILE A 82 ASN A 94 VAL A 106 SITE 3 AC1 21 HIS A 125 ILE A 127 ASP A 128 GLY A 130 SITE 4 AC1 21 ILE A 131 ASP A 132 SER A 191 ARG A 192 SITE 5 AC1 21 HOH A 403 HOH A 405 HOH A 451 HOH A 484 SITE 6 AC1 21 HOH A 593 SITE 1 AC2 17 LYS A 9 GLU A 77 VAL A 106 PHE A 107 SITE 2 AC2 17 THR A 108 SER A 109 LEU A 197 PHE A 219 SITE 3 AC2 17 TYR A 222 GLN A 223 HOH A 462 HOH A 490 SITE 4 AC2 17 HOH A 550 HOH A 593 HOH A 638 HOH A 640 SITE 5 AC2 17 HOH A 742 SITE 1 AC3 6 PHE A 203 ILE A 227 ASN A 228 PHE A 247 SITE 2 AC3 6 HOH A 668 HOH A 776 SITE 1 AC4 19 SER B 75 PHE B 78 ASP B 79 GLN B 80 SITE 2 AC4 19 ILE B 81 ILE B 82 ASN B 94 HIS B 125 SITE 3 AC4 19 ILE B 127 ASP B 128 ASN B 129 GLY B 130 SITE 4 AC4 19 ASP B 132 ARG B 192 HOH B 403 HOH B 421 SITE 5 AC4 19 HOH B 537 HOH B 628 HOH B 731 SITE 1 AC5 19 LYS B 9 GLU B 77 VAL B 106 PHE B 107 SITE 2 AC5 19 THR B 108 SER B 109 TYR B 154 ARG B 192 SITE 3 AC5 19 LEU B 197 PHE B 219 TYR B 222 GLN B 223 SITE 4 AC5 19 HOH B 425 HOH B 429 HOH B 437 HOH B 583 SITE 5 AC5 19 HOH B 600 HOH B 763 HOH B 800 SITE 1 AC6 8 PHE B 203 ILE B 227 ASN B 228 PHE B 247 SITE 2 AC6 8 HOH B 434 HOH B 474 HOH B 514 HOH B 751 CRYST1 96.337 65.858 134.600 90.00 109.88 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010380 0.000000 0.003754 0.00000 SCALE2 0.000000 0.015184 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007900 0.00000