HEADER PROTEIN BINDING 31-JUL-13 4LYI TITLE CRYSTAL STRUCTURE OF APO-BRD4(1) COMPND MOL_ID: 1; COMPND 2 MOLECULE: BROMODOMAIN-CONTAINING PROTEIN 4; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: FIRST BROMODOMAIN DOMAIN (UNP RESIDUES 44-168); COMPND 5 SYNONYM: PROTEIN HUNK1; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BRD4, HUNK1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS BROMODOMAIN, EPIGENETIC READER PROTEIN, ACETYLATED LYSIN, HISTONE KEYWDS 2 TAIL, NUCLEUS, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR D.WOHLWEND REVDAT 3 28-FEB-24 4LYI 1 REMARK SEQADV LINK REVDAT 2 15-NOV-17 4LYI 1 REMARK REVDAT 1 15-JAN-14 4LYI 0 JRNL AUTH X.LUCAS,D.WOHLWEND,M.HUGLE,K.SCHMIDTKUNZ,S.GERHARDT, JRNL AUTH 2 R.SCHULE,M.JUNG,O.EINSLE,S.GUNTHER JRNL TITL 4-ACYL PYRROLES: MIMICKING ACETYLATED LYSINES IN HISTONE JRNL TITL 2 CODE READING. JRNL REF ANGEW.CHEM.INT.ED.ENGL. V. 52 14055 2013 JRNL REFN ISSN 1433-7851 JRNL PMID 24272870 JRNL DOI 10.1002/ANIE.201307652 REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.97 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.9 REMARK 3 NUMBER OF REFLECTIONS : 29446 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.188 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.198 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1568 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.33 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2089 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.91 REMARK 3 BIN R VALUE (WORKING SET) : 0.2140 REMARK 3 BIN FREE R VALUE SET COUNT : 99 REMARK 3 BIN FREE R VALUE : 0.2680 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1062 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 47 REMARK 3 SOLVENT ATOMS : 174 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.77 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.44000 REMARK 3 B22 (A**2) : -0.55000 REMARK 3 B33 (A**2) : 0.11000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.058 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.056 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.035 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.568 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.957 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1155 ; 0.010 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 12 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1554 ; 1.458 ; 1.986 REMARK 3 BOND ANGLES OTHERS (DEGREES): 24 ; 1.110 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 134 ; 5.704 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 56 ;41.398 ;26.071 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 206 ;12.718 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 3 ;12.512 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 163 ; 0.095 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 866 ; 0.008 ; 0.022 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 518 ; 0.242 ; 0.394 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 649 ; 0.411 ; 0.589 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 637 ; 0.555 ; 0.543 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 42 A 59 REMARK 3 ORIGIN FOR THE GROUP (A): -13.8202 -1.3604 -20.5596 REMARK 3 T TENSOR REMARK 3 T11: 0.1336 T22: 0.1035 REMARK 3 T33: 0.0319 T12: -0.0064 REMARK 3 T13: -0.0168 T23: -0.0167 REMARK 3 L TENSOR REMARK 3 L11: 0.5138 L22: 1.3931 REMARK 3 L33: 3.5781 L12: -0.4583 REMARK 3 L13: 0.2970 L23: -2.0945 REMARK 3 S TENSOR REMARK 3 S11: 0.0639 S12: 0.0971 S13: -0.0431 REMARK 3 S21: -0.1280 S22: -0.0765 S23: 0.0181 REMARK 3 S31: 0.1758 S32: 0.0107 S33: 0.0126 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 60 A 88 REMARK 3 ORIGIN FOR THE GROUP (A): -5.5548 6.1614 -7.3482 REMARK 3 T TENSOR REMARK 3 T11: 0.0564 T22: 0.0590 REMARK 3 T33: 0.0125 T12: -0.0158 REMARK 3 T13: -0.0081 T23: -0.0040 REMARK 3 L TENSOR REMARK 3 L11: 0.5315 L22: 2.7048 REMARK 3 L33: 1.3353 L12: 0.2841 REMARK 3 L13: -0.1858 L23: -0.4452 REMARK 3 S TENSOR REMARK 3 S11: -0.0193 S12: 0.0402 S13: -0.0192 REMARK 3 S21: -0.0979 S22: 0.0174 S23: -0.0512 REMARK 3 S31: -0.0965 S32: 0.1077 S33: 0.0019 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 89 A 100 REMARK 3 ORIGIN FOR THE GROUP (A): -16.9893 -12.2348 -2.7230 REMARK 3 T TENSOR REMARK 3 T11: 0.0696 T22: 0.0475 REMARK 3 T33: 0.0297 T12: -0.0227 REMARK 3 T13: 0.0050 T23: -0.0075 REMARK 3 L TENSOR REMARK 3 L11: 6.2252 L22: 4.1020 REMARK 3 L33: 3.1395 L12: -2.0922 REMARK 3 L13: 1.0419 L23: -0.3542 REMARK 3 S TENSOR REMARK 3 S11: 0.0142 S12: -0.0334 S13: -0.2461 REMARK 3 S21: 0.2379 S22: 0.0388 S23: -0.0055 REMARK 3 S31: 0.0271 S32: -0.0174 S33: -0.0530 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 101 A 129 REMARK 3 ORIGIN FOR THE GROUP (A): -12.9660 4.6148 -14.8356 REMARK 3 T TENSOR REMARK 3 T11: 0.0692 T22: 0.0871 REMARK 3 T33: 0.0023 T12: -0.0072 REMARK 3 T13: -0.0067 T23: 0.0018 REMARK 3 L TENSOR REMARK 3 L11: 0.0485 L22: 2.6965 REMARK 3 L33: 2.7961 L12: -0.1308 REMARK 3 L13: 0.3469 L23: -1.5636 REMARK 3 S TENSOR REMARK 3 S11: -0.0110 S12: 0.0240 S13: -0.0038 REMARK 3 S21: -0.0833 S22: 0.0354 S23: -0.0162 REMARK 3 S31: -0.0687 S32: 0.0442 S33: -0.0245 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 130 A 144 REMARK 3 ORIGIN FOR THE GROUP (A): -18.2546 0.3393 0.9032 REMARK 3 T TENSOR REMARK 3 T11: 0.0701 T22: 0.0902 REMARK 3 T33: 0.0227 T12: 0.0242 REMARK 3 T13: 0.0110 T23: 0.0017 REMARK 3 L TENSOR REMARK 3 L11: 2.0146 L22: 4.8241 REMARK 3 L33: 3.4603 L12: 1.2549 REMARK 3 L13: -1.4377 L23: -1.4485 REMARK 3 S TENSOR REMARK 3 S11: -0.0152 S12: -0.2304 S13: 0.0043 REMARK 3 S21: 0.3010 S22: 0.0800 S23: 0.1475 REMARK 3 S31: -0.1356 S32: -0.1034 S33: -0.0648 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 145 A 162 REMARK 3 ORIGIN FOR THE GROUP (A): -11.2230 9.3843 1.0212 REMARK 3 T TENSOR REMARK 3 T11: 0.0787 T22: 0.0629 REMARK 3 T33: 0.0425 T12: 0.0139 REMARK 3 T13: 0.0040 T23: -0.0118 REMARK 3 L TENSOR REMARK 3 L11: 1.5924 L22: 7.1907 REMARK 3 L33: 2.9524 L12: 0.5243 REMARK 3 L13: 0.2263 L23: -3.4666 REMARK 3 S TENSOR REMARK 3 S11: 0.0020 S12: -0.0564 S13: 0.0431 REMARK 3 S21: 0.1350 S22: 0.0815 S23: 0.0541 REMARK 3 S31: -0.1592 S32: 0.0313 S33: -0.0836 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 163 A 168 REMARK 3 ORIGIN FOR THE GROUP (A): -10.1420 22.5208 -14.8444 REMARK 3 T TENSOR REMARK 3 T11: 0.2597 T22: 0.1607 REMARK 3 T33: 0.1952 T12: -0.0375 REMARK 3 T13: -0.0100 T23: 0.0139 REMARK 3 L TENSOR REMARK 3 L11: 4.2752 L22: 3.3455 REMARK 3 L33: 12.5208 L12: -1.8983 REMARK 3 L13: -2.5741 L23: -1.1003 REMARK 3 S TENSOR REMARK 3 S11: 0.1119 S12: 0.4551 S13: 0.1200 REMARK 3 S21: -0.1848 S22: -0.1948 S23: -0.0008 REMARK 3 S31: -0.8060 S32: 0.4737 S33: 0.0829 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4LYI COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-AUG-13. REMARK 100 THE DEPOSITION ID IS D_1000081245. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 26-MAR-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X06SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : FIXED-EXIT LN2 COOLED DOUBLE REMARK 200 CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31049 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 38.970 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 200 DATA REDUNDANCY : 6.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.13200 REMARK 200 FOR THE DATA SET : 9.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.37 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.8 REMARK 200 DATA REDUNDANCY IN SHELL : 5.80 REMARK 200 R MERGE FOR SHELL (I) : 0.32100 REMARK 200 R SYM FOR SHELL (I) : 0.32100 REMARK 200 FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.3.0 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.98 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: BIS TRIS PROPANE, PEG 3350, NAI, REMARK 280 ETHYLENE GLYCOL, PH 8.3, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 18.63000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 38.97000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 22.04500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 38.97000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 18.63000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 22.04500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 415 O HOH A 473 3444 1.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 212 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 137 O REMARK 620 2 ILE A 138 O 84.1 REMARK 620 3 ASN A 140 O 93.6 101.8 REMARK 620 4 HOH A 469 O 148.0 68.5 76.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 203 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 204 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 205 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 206 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 207 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 208 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 209 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 210 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IOD A 211 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 212 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 21H A 213 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4LYS RELATED DB: PDB REMARK 900 RELATED ID: 4LYW RELATED DB: PDB REMARK 900 RELATED ID: 4LZR RELATED DB: PDB REMARK 900 RELATED ID: 4LZS RELATED DB: PDB DBREF 4LYI A 44 168 UNP O60885 BRD4_HUMAN 44 168 SEQADV 4LYI SER A 42 UNP O60885 EXPRESSION TAG SEQADV 4LYI MET A 43 UNP O60885 EXPRESSION TAG SEQRES 1 A 127 SER MET ASN PRO PRO PRO PRO GLU THR SER ASN PRO ASN SEQRES 2 A 127 LYS PRO LYS ARG GLN THR ASN GLN LEU GLN TYR LEU LEU SEQRES 3 A 127 ARG VAL VAL LEU LYS THR LEU TRP LYS HIS GLN PHE ALA SEQRES 4 A 127 TRP PRO PHE GLN GLN PRO VAL ASP ALA VAL LYS LEU ASN SEQRES 5 A 127 LEU PRO ASP TYR TYR LYS ILE ILE LYS THR PRO MET ASP SEQRES 6 A 127 MET GLY THR ILE LYS LYS ARG LEU GLU ASN ASN TYR TYR SEQRES 7 A 127 TRP ASN ALA GLN GLU CYS ILE GLN ASP PHE ASN THR MET SEQRES 8 A 127 PHE THR ASN CYS TYR ILE TYR ASN LYS PRO GLY ASP ASP SEQRES 9 A 127 ILE VAL LEU MET ALA GLU ALA LEU GLU LYS LEU PHE LEU SEQRES 10 A 127 GLN LYS ILE ASN GLU LEU PRO THR GLU GLU HET EDO A 201 4 HET EDO A 202 4 HET EDO A 203 4 HET EDO A 204 4 HET EDO A 205 4 HET EDO A 206 4 HET EDO A 207 4 HET EDO A 208 4 HET EDO A 209 4 HET EDO A 210 4 HET IOD A 211 1 HET NA A 212 1 HET 21H A 213 5 HETNAM EDO 1,2-ETHANEDIOL HETNAM IOD IODIDE ION HETNAM NA SODIUM ION HETNAM 21H OXYDIMETHANOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 EDO 10(C2 H6 O2) FORMUL 12 IOD I 1- FORMUL 13 NA NA 1+ FORMUL 14 21H C2 H6 O3 FORMUL 15 HOH *174(H2 O) HELIX 1 1 THR A 60 VAL A 69 1 10 HELIX 2 2 VAL A 69 LYS A 76 1 8 HELIX 3 3 ALA A 80 GLN A 84 5 5 HELIX 4 4 ASP A 96 ILE A 101 1 6 HELIX 5 5 ASP A 106 ASN A 116 1 11 HELIX 6 6 ASN A 121 ASN A 140 1 20 HELIX 7 7 ASP A 144 GLU A 163 1 20 LINK O TYR A 137 NA NA A 212 1555 1555 2.33 LINK O ILE A 138 NA NA A 212 1555 1555 2.66 LINK O ASN A 140 NA NA A 212 1555 1555 2.26 LINK NA NA A 212 O HOH A 469 1555 1555 2.72 SITE 1 AC1 4 GLY A 143 VAL A 147 GLU A 151 HOH A 412 SITE 1 AC2 5 LYS A 99 LYS A 102 EDO A 209 HOH A 308 SITE 2 AC2 5 HOH A 425 SITE 1 AC3 6 ILE A 100 ILE A 101 LYS A 102 THR A 103 SITE 2 AC3 6 ASN A 135 HOH A 450 SITE 1 AC4 6 TRP A 75 LYS A 76 HIS A 77 GLN A 84 SITE 2 AC4 6 HOH A 343 HOH A 385 SITE 1 AC5 5 LYS A 155 LEU A 158 GLN A 159 HOH A 384 SITE 2 AC5 5 HOH A 410 SITE 1 AC6 8 PRO A 82 GLN A 85 PRO A 86 VAL A 87 SITE 2 AC6 8 ASP A 88 LEU A 92 EDO A 207 HOH A 457 SITE 1 AC7 7 TRP A 81 PRO A 82 LEU A 92 EDO A 206 SITE 2 AC7 7 EDO A 208 HOH A 371 HOH A 436 SITE 1 AC8 6 TRP A 81 LYS A 99 ILE A 146 EDO A 207 SITE 2 AC8 6 HOH A 425 HOH A 453 SITE 1 AC9 4 LYS A 57 ARG A 58 GLN A 59 EDO A 202 SITE 1 BC1 5 GLN A 59 GLN A 64 ARG A 68 HOH A 365 SITE 2 BC1 5 HOH A 434 SITE 1 BC2 1 GLN A 64 SITE 1 BC3 6 TYR A 137 ILE A 138 ASN A 140 GLU A 163 SITE 2 BC3 6 21H A 213 HOH A 469 SITE 1 BC4 6 THR A 134 TYR A 137 LYS A 160 GLU A 163 SITE 2 BC4 6 NA A 212 HOH A 403 CRYST1 37.260 44.090 77.940 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026838 0.000000 0.000000 0.00000 SCALE2 0.000000 0.022681 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012830 0.00000