data_4LYJ
#
_entry.id 4LYJ
#
_audit_conform.dict_name mmcif_pdbx.dic
_audit_conform.dict_version 5.399
_audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic
#
loop_
_database_2.database_id
_database_2.database_code
_database_2.pdbx_database_accession
_database_2.pdbx_DOI
PDB 4LYJ pdb_00004lyj 10.2210/pdb4lyj/pdb
RCSB RCSB081246 ? ?
WWPDB D_1000081246 ? ?
#
loop_
_pdbx_audit_revision_history.ordinal
_pdbx_audit_revision_history.data_content_type
_pdbx_audit_revision_history.major_revision
_pdbx_audit_revision_history.minor_revision
_pdbx_audit_revision_history.revision_date
1 'Structure model' 1 0 2013-11-27
2 'Structure model' 1 1 2013-12-18
3 'Structure model' 1 2 2017-11-15
4 'Structure model' 1 3 2018-03-14
5 'Structure model' 1 4 2023-09-20
6 'Structure model' 1 5 2024-11-20
#
_pdbx_audit_revision_details.ordinal 1
_pdbx_audit_revision_details.revision_ordinal 1
_pdbx_audit_revision_details.data_content_type 'Structure model'
_pdbx_audit_revision_details.provider repository
_pdbx_audit_revision_details.type 'Initial release'
_pdbx_audit_revision_details.description ?
_pdbx_audit_revision_details.details ?
#
loop_
_pdbx_audit_revision_group.ordinal
_pdbx_audit_revision_group.revision_ordinal
_pdbx_audit_revision_group.data_content_type
_pdbx_audit_revision_group.group
1 2 'Structure model' 'Database references'
2 3 'Structure model' 'Refinement description'
3 4 'Structure model' 'Database references'
4 5 'Structure model' 'Data collection'
5 5 'Structure model' 'Database references'
6 5 'Structure model' 'Derived calculations'
7 5 'Structure model' 'Refinement description'
8 6 'Structure model' 'Structure summary'
#
loop_
_pdbx_audit_revision_category.ordinal
_pdbx_audit_revision_category.revision_ordinal
_pdbx_audit_revision_category.data_content_type
_pdbx_audit_revision_category.category
1 3 'Structure model' software
2 4 'Structure model' struct_ref_seq_dif
3 5 'Structure model' chem_comp_atom
4 5 'Structure model' chem_comp_bond
5 5 'Structure model' database_2
6 5 'Structure model' pdbx_initial_refinement_model
7 5 'Structure model' pdbx_struct_conn_angle
8 5 'Structure model' struct_conn
9 5 'Structure model' struct_conn_type
10 5 'Structure model' struct_ref_seq_dif
11 5 'Structure model' struct_site
12 6 'Structure model' pdbx_entry_details
13 6 'Structure model' pdbx_modification_feature
#
loop_
_pdbx_audit_revision_item.ordinal
_pdbx_audit_revision_item.revision_ordinal
_pdbx_audit_revision_item.data_content_type
_pdbx_audit_revision_item.item
1 4 'Structure model' '_struct_ref_seq_dif.details'
2 5 'Structure model' '_database_2.pdbx_DOI'
3 5 'Structure model' '_database_2.pdbx_database_accession'
4 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id'
5 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id'
6 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id'
7 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id'
8 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id'
9 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id'
10 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id'
11 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id'
12 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id'
13 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id'
14 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id'
15 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id'
16 5 'Structure model' '_pdbx_struct_conn_angle.value'
17 5 'Structure model' '_struct_conn.conn_type_id'
18 5 'Structure model' '_struct_conn.id'
19 5 'Structure model' '_struct_conn.pdbx_dist_value'
20 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag'
21 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id'
22 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id'
23 5 'Structure model' '_struct_conn.ptnr1_label_asym_id'
24 5 'Structure model' '_struct_conn.ptnr1_label_atom_id'
25 5 'Structure model' '_struct_conn.ptnr1_label_comp_id'
26 5 'Structure model' '_struct_conn.ptnr1_label_seq_id'
27 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id'
28 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id'
29 5 'Structure model' '_struct_conn.ptnr2_label_asym_id'
30 5 'Structure model' '_struct_conn.ptnr2_label_atom_id'
31 5 'Structure model' '_struct_conn.ptnr2_label_comp_id'
32 5 'Structure model' '_struct_conn_type.id'
33 5 'Structure model' '_struct_ref_seq_dif.details'
34 5 'Structure model' '_struct_site.pdbx_auth_asym_id'
35 5 'Structure model' '_struct_site.pdbx_auth_comp_id'
36 5 'Structure model' '_struct_site.pdbx_auth_seq_id'
37 6 'Structure model' '_pdbx_entry_details.has_protein_modification'
#
_pdbx_database_status.entry_id 4LYJ
_pdbx_database_status.status_code REL
_pdbx_database_status.deposit_site RCSB
_pdbx_database_status.process_site RCSB
_pdbx_database_status.recvd_initial_deposition_date 2013-07-31
_pdbx_database_status.status_code_sf REL
_pdbx_database_status.status_code_mr ?
_pdbx_database_status.SG_entry ?
_pdbx_database_status.status_code_cs ?
_pdbx_database_status.methods_development_category ?
_pdbx_database_status.pdb_format_compatible Y
_pdbx_database_status.status_code_nmr_data ?
#
loop_
_pdbx_database_related.db_name
_pdbx_database_related.db_id
_pdbx_database_related.details
_pdbx_database_related.content_type
PDB 4L8G 'related mutant of protein' unspecified
PDB 4LUC 'protein bound to related compound' unspecified
PDB 4LYF 'protein bound to related compound' unspecified
PDB 4L9W 'protein isoform' unspecified
PDB 4L9S 'protein isoform' unspecified
PDB 4LPK 'wild-type form of protein' unspecified
PDB 4LV6 'protein bound to related compound' unspecified
PDB 4LYH 'protein bound to same compound, different space group' unspecified
PDB 4LRW 'protein without inhibitor bound' unspecified
PDB 4M1O 'related compound bound to protein' unspecified
PDB 4M1S 'related compound bound to protein' unspecified
PDB 4M1T 'related compound bound to protein' unspecified
PDB 4M1W 'related compound bound to protein' unspecified
PDB 4M1Y 'related compound bound to protein' unspecified
PDB 4M21 'related compound bound to protein' unspecified
PDB 4M22 'related compound bound to protein' unspecified
#
loop_
_audit_author.name
_audit_author.pdbx_ordinal
'Ostrem, J.M.' 1
'Peters, U.' 2
'Sos, M.L.' 3
'Wells, J.A.' 4
'Shokat, K.M.' 5
#
_citation.id primary
_citation.title 'K-Ras(G12C) inhibitors allosterically control GTP affinity and effector interactions.'
_citation.journal_abbrev Nature
_citation.journal_volume 503
_citation.page_first 548
_citation.page_last 551
_citation.year 2013
_citation.journal_id_ASTM NATUAS
_citation.country UK
_citation.journal_id_ISSN 0028-0836
_citation.journal_id_CSD 0006
_citation.book_publisher ?
_citation.pdbx_database_id_PubMed 24256730
_citation.pdbx_database_id_DOI 10.1038/nature12796
#
loop_
_citation_author.citation_id
_citation_author.name
_citation_author.ordinal
_citation_author.identifier_ORCID
primary 'Ostrem, J.M.' 1 ?
primary 'Peters, U.' 2 ?
primary 'Sos, M.L.' 3 ?
primary 'Wells, J.A.' 4 ?
primary 'Shokat, K.M.' 5 ?
#
loop_
_entity.id
_entity.type
_entity.src_method
_entity.pdbx_description
_entity.formula_weight
_entity.pdbx_number_of_molecules
_entity.pdbx_ec
_entity.pdbx_mutation
_entity.pdbx_fragment
_entity.details
1 polymer man 'GTPase KRas' 19352.785 1 ? ?
'UNP residues 1-169' ?
2 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ?
3 non-polymer syn 'N-{1-[N-(4-chloro-5-iodo-2-methoxyphenyl)glycyl]piperidin-4-yl}ethanesulfonamide' 515.794 1 ? ? ? ?
4 non-polymer syn "GUANOSINE-5'-DIPHOSPHATE" 443.201 1 ? ? ? ?
5 water nat water 18.015 78 ? ? ? ?
#
_entity_name_com.entity_id 1
_entity_name_com.name 'K-Ras 2, Ki-Ras, c-K-ras, c-Ki-ras, GTPase KRas, N-terminally processed'
#
_entity_poly.entity_id 1
_entity_poly.type 'polypeptide(L)'
_entity_poly.nstd_linkage no
_entity_poly.nstd_monomer no
_entity_poly.pdbx_seq_one_letter_code
;GMTEYKLVVVGACGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETSLLDILDTAGQEEYSAMRDQYMRTGEGFL
LVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTL
VREIRKHKEK
;
_entity_poly.pdbx_seq_one_letter_code_can
;GMTEYKLVVVGACGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETSLLDILDTAGQEEYSAMRDQYMRTGEGFL
LVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKSDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTL
VREIRKHKEK
;
_entity_poly.pdbx_strand_id A
_entity_poly.pdbx_target_identifier ?
#
loop_
_pdbx_entity_nonpoly.entity_id
_pdbx_entity_nonpoly.name
_pdbx_entity_nonpoly.comp_id
2 'MAGNESIUM ION' MG
3 'N-{1-[N-(4-chloro-5-iodo-2-methoxyphenyl)glycyl]piperidin-4-yl}ethanesulfonamide' 21F
4 "GUANOSINE-5'-DIPHOSPHATE" GDP
5 water HOH
#
loop_
_entity_poly_seq.entity_id
_entity_poly_seq.num
_entity_poly_seq.mon_id
_entity_poly_seq.hetero
1 1 GLY n
1 2 MET n
1 3 THR n
1 4 GLU n
1 5 TYR n
1 6 LYS n
1 7 LEU n
1 8 VAL n
1 9 VAL n
1 10 VAL n
1 11 GLY n
1 12 ALA n
1 13 CYS n
1 14 GLY n
1 15 VAL n
1 16 GLY n
1 17 LYS n
1 18 SER n
1 19 ALA n
1 20 LEU n
1 21 THR n
1 22 ILE n
1 23 GLN n
1 24 LEU n
1 25 ILE n
1 26 GLN n
1 27 ASN n
1 28 HIS n
1 29 PHE n
1 30 VAL n
1 31 ASP n
1 32 GLU n
1 33 TYR n
1 34 ASP n
1 35 PRO n
1 36 THR n
1 37 ILE n
1 38 GLU n
1 39 ASP n
1 40 SER n
1 41 TYR n
1 42 ARG n
1 43 LYS n
1 44 GLN n
1 45 VAL n
1 46 VAL n
1 47 ILE n
1 48 ASP n
1 49 GLY n
1 50 GLU n
1 51 THR n
1 52 SER n
1 53 LEU n
1 54 LEU n
1 55 ASP n
1 56 ILE n
1 57 LEU n
1 58 ASP n
1 59 THR n
1 60 ALA n
1 61 GLY n
1 62 GLN n
1 63 GLU n
1 64 GLU n
1 65 TYR n
1 66 SER n
1 67 ALA n
1 68 MET n
1 69 ARG n
1 70 ASP n
1 71 GLN n
1 72 TYR n
1 73 MET n
1 74 ARG n
1 75 THR n
1 76 GLY n
1 77 GLU n
1 78 GLY n
1 79 PHE n
1 80 LEU n
1 81 LEU n
1 82 VAL n
1 83 PHE n
1 84 ALA n
1 85 ILE n
1 86 ASN n
1 87 ASN n
1 88 THR n
1 89 LYS n
1 90 SER n
1 91 PHE n
1 92 GLU n
1 93 ASP n
1 94 ILE n
1 95 HIS n
1 96 HIS n
1 97 TYR n
1 98 ARG n
1 99 GLU n
1 100 GLN n
1 101 ILE n
1 102 LYS n
1 103 ARG n
1 104 VAL n
1 105 LYS n
1 106 ASP n
1 107 SER n
1 108 GLU n
1 109 ASP n
1 110 VAL n
1 111 PRO n
1 112 MET n
1 113 VAL n
1 114 LEU n
1 115 VAL n
1 116 GLY n
1 117 ASN n
1 118 LYS n
1 119 SER n
1 120 ASP n
1 121 LEU n
1 122 PRO n
1 123 SER n
1 124 ARG n
1 125 THR n
1 126 VAL n
1 127 ASP n
1 128 THR n
1 129 LYS n
1 130 GLN n
1 131 ALA n
1 132 GLN n
1 133 ASP n
1 134 LEU n
1 135 ALA n
1 136 ARG n
1 137 SER n
1 138 TYR n
1 139 GLY n
1 140 ILE n
1 141 PRO n
1 142 PHE n
1 143 ILE n
1 144 GLU n
1 145 THR n
1 146 SER n
1 147 ALA n
1 148 LYS n
1 149 THR n
1 150 ARG n
1 151 GLN n
1 152 GLY n
1 153 VAL n
1 154 ASP n
1 155 ASP n
1 156 ALA n
1 157 PHE n
1 158 TYR n
1 159 THR n
1 160 LEU n
1 161 VAL n
1 162 ARG n
1 163 GLU n
1 164 ILE n
1 165 ARG n
1 166 LYS n
1 167 HIS n
1 168 LYS n
1 169 GLU n
1 170 LYS n
#
_entity_src_gen.entity_id 1
_entity_src_gen.pdbx_src_id 1
_entity_src_gen.pdbx_alt_source_flag sample
_entity_src_gen.pdbx_seq_type ?
_entity_src_gen.pdbx_beg_seq_num ?
_entity_src_gen.pdbx_end_seq_num ?
_entity_src_gen.gene_src_common_name human
_entity_src_gen.gene_src_genus ?
_entity_src_gen.pdbx_gene_src_gene 'KRAS, KRAS isoform 2B, KRAS2, RASK2'
_entity_src_gen.gene_src_species ?
_entity_src_gen.gene_src_strain ?
_entity_src_gen.gene_src_tissue ?
_entity_src_gen.gene_src_tissue_fraction ?
_entity_src_gen.gene_src_details ?
_entity_src_gen.pdbx_gene_src_fragment ?
_entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens'
_entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606
_entity_src_gen.pdbx_gene_src_variant ?
_entity_src_gen.pdbx_gene_src_cell_line ?
_entity_src_gen.pdbx_gene_src_atcc ?
_entity_src_gen.pdbx_gene_src_organ ?
_entity_src_gen.pdbx_gene_src_organelle ?
_entity_src_gen.pdbx_gene_src_cell ?
_entity_src_gen.pdbx_gene_src_cellular_location ?
_entity_src_gen.host_org_common_name ?
_entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli'
_entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008
_entity_src_gen.host_org_genus ?
_entity_src_gen.pdbx_host_org_gene ?
_entity_src_gen.pdbx_host_org_organ ?
_entity_src_gen.host_org_species ?
_entity_src_gen.pdbx_host_org_tissue ?
_entity_src_gen.pdbx_host_org_tissue_fraction ?
_entity_src_gen.pdbx_host_org_strain 'BL21 (DE3)'
_entity_src_gen.pdbx_host_org_variant ?
_entity_src_gen.pdbx_host_org_cell_line ?
_entity_src_gen.pdbx_host_org_atcc ?
_entity_src_gen.pdbx_host_org_culture_collection ?
_entity_src_gen.pdbx_host_org_cell ?
_entity_src_gen.pdbx_host_org_organelle ?
_entity_src_gen.pdbx_host_org_cellular_location ?
_entity_src_gen.pdbx_host_org_vector_type plasmid
_entity_src_gen.pdbx_host_org_vector ?
_entity_src_gen.host_org_details ?
_entity_src_gen.expression_system_id ?
_entity_src_gen.plasmid_name pJexpress411
_entity_src_gen.plasmid_details ?
_entity_src_gen.pdbx_description ?
#
loop_
_chem_comp.id
_chem_comp.type
_chem_comp.mon_nstd_flag
_chem_comp.name
_chem_comp.pdbx_synonyms
_chem_comp.formula
_chem_comp.formula_weight
21F non-polymer . 'N-{1-[N-(4-chloro-5-iodo-2-methoxyphenyl)glycyl]piperidin-4-yl}ethanesulfonamide' ?
'C16 H23 Cl I N3 O4 S' 515.794
ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093
ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1'
175.209
ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3'
132.118
ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4'
133.103
CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S'
121.158
GDP 'RNA linking' n "GUANOSINE-5'-DIPHOSPHATE" ? 'C10 H15 N5 O11 P2'
443.201
GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3'
146.144
GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4'
147.129
GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067
HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1'
156.162
HOH non-polymer . WATER ? 'H2 O' 18.015
ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2'
131.173
LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2'
131.173
LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1'
147.195
MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S'
149.211
MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305
PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2'
165.189
PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2'
115.130
SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3'
105.093
THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3'
119.119
TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3'
181.189
VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2'
117.146
#
loop_
_pdbx_poly_seq_scheme.asym_id
_pdbx_poly_seq_scheme.entity_id
_pdbx_poly_seq_scheme.seq_id
_pdbx_poly_seq_scheme.mon_id
_pdbx_poly_seq_scheme.ndb_seq_num
_pdbx_poly_seq_scheme.pdb_seq_num
_pdbx_poly_seq_scheme.auth_seq_num
_pdbx_poly_seq_scheme.pdb_mon_id
_pdbx_poly_seq_scheme.auth_mon_id
_pdbx_poly_seq_scheme.pdb_strand_id
_pdbx_poly_seq_scheme.pdb_ins_code
_pdbx_poly_seq_scheme.hetero
A 1 1 GLY 1 0 ? ? ? A . n
A 1 2 MET 2 1 ? ? ? A . n
A 1 3 THR 3 2 2 THR THR A . n
A 1 4 GLU 4 3 3 GLU GLU A . n
A 1 5 TYR 5 4 4 TYR TYR A . n
A 1 6 LYS 6 5 5 LYS LYS A . n
A 1 7 LEU 7 6 6 LEU LEU A . n
A 1 8 VAL 8 7 7 VAL VAL A . n
A 1 9 VAL 9 8 8 VAL VAL A . n
A 1 10 VAL 10 9 9 VAL VAL A . n
A 1 11 GLY 11 10 10 GLY GLY A . n
A 1 12 ALA 12 11 11 ALA ALA A . n
A 1 13 CYS 13 12 12 CYS CYS A . n
A 1 14 GLY 14 13 13 GLY GLY A . n
A 1 15 VAL 15 14 14 VAL VAL A . n
A 1 16 GLY 16 15 15 GLY GLY A . n
A 1 17 LYS 17 16 16 LYS LYS A . n
A 1 18 SER 18 17 17 SER SER A . n
A 1 19 ALA 19 18 18 ALA ALA A . n
A 1 20 LEU 20 19 19 LEU LEU A . n
A 1 21 THR 21 20 20 THR THR A . n
A 1 22 ILE 22 21 21 ILE ILE A . n
A 1 23 GLN 23 22 22 GLN GLN A . n
A 1 24 LEU 24 23 23 LEU LEU A . n
A 1 25 ILE 25 24 24 ILE ILE A . n
A 1 26 GLN 26 25 25 GLN GLN A . n
A 1 27 ASN 27 26 26 ASN ASN A . n
A 1 28 HIS 28 27 27 HIS HIS A . n
A 1 29 PHE 29 28 28 PHE PHE A . n
A 1 30 VAL 30 29 29 VAL VAL A . n
A 1 31 ASP 31 30 30 ASP ASP A . n
A 1 32 GLU 32 31 31 GLU GLU A . n
A 1 33 TYR 33 32 32 TYR TYR A . n
A 1 34 ASP 34 33 33 ASP ASP A . n
A 1 35 PRO 35 34 34 PRO PRO A . n
A 1 36 THR 36 35 35 THR THR A . n
A 1 37 ILE 37 36 36 ILE ILE A . n
A 1 38 GLU 38 37 37 GLU GLU A . n
A 1 39 ASP 39 38 38 ASP ASP A . n
A 1 40 SER 40 39 39 SER SER A . n
A 1 41 TYR 41 40 40 TYR TYR A . n
A 1 42 ARG 42 41 41 ARG ARG A . n
A 1 43 LYS 43 42 42 LYS LYS A . n
A 1 44 GLN 44 43 43 GLN GLN A . n
A 1 45 VAL 45 44 44 VAL VAL A . n
A 1 46 VAL 46 45 45 VAL VAL A . n
A 1 47 ILE 47 46 46 ILE ILE A . n
A 1 48 ASP 48 47 47 ASP ASP A . n
A 1 49 GLY 49 48 48 GLY GLY A . n
A 1 50 GLU 50 49 49 GLU GLU A . n
A 1 51 THR 51 50 50 THR THR A . n
A 1 52 SER 52 51 51 SER SER A . n
A 1 53 LEU 53 52 52 LEU LEU A . n
A 1 54 LEU 54 53 53 LEU LEU A . n
A 1 55 ASP 55 54 54 ASP ASP A . n
A 1 56 ILE 56 55 55 ILE ILE A . n
A 1 57 LEU 57 56 56 LEU LEU A . n
A 1 58 ASP 58 57 57 ASP ASP A . n
A 1 59 THR 59 58 58 THR THR A . n
A 1 60 ALA 60 59 59 ALA ALA A . n
A 1 61 GLY 61 60 60 GLY GLY A . n
A 1 62 GLN 62 61 61 GLN GLN A . n
A 1 63 GLU 63 62 62 GLU GLU A . n
A 1 64 GLU 64 63 63 GLU GLU A . n
A 1 65 TYR 65 64 64 TYR TYR A . n
A 1 66 SER 66 65 65 SER SER A . n
A 1 67 ALA 67 66 66 ALA ALA A . n
A 1 68 MET 68 67 67 MET MET A . n
A 1 69 ARG 69 68 68 ARG ARG A . n
A 1 70 ASP 70 69 69 ASP ASP A . n
A 1 71 GLN 71 70 70 GLN GLN A . n
A 1 72 TYR 72 71 71 TYR TYR A . n
A 1 73 MET 73 72 72 MET MET A . n
A 1 74 ARG 74 73 73 ARG ARG A . n
A 1 75 THR 75 74 74 THR THR A . n
A 1 76 GLY 76 75 75 GLY GLY A . n
A 1 77 GLU 77 76 76 GLU GLU A . n
A 1 78 GLY 78 77 77 GLY GLY A . n
A 1 79 PHE 79 78 78 PHE PHE A . n
A 1 80 LEU 80 79 79 LEU LEU A . n
A 1 81 LEU 81 80 80 LEU LEU A . n
A 1 82 VAL 82 81 81 VAL VAL A . n
A 1 83 PHE 83 82 82 PHE PHE A . n
A 1 84 ALA 84 83 83 ALA ALA A . n
A 1 85 ILE 85 84 84 ILE ILE A . n
A 1 86 ASN 86 85 85 ASN ASN A . n
A 1 87 ASN 87 86 86 ASN ASN A . n
A 1 88 THR 88 87 87 THR THR A . n
A 1 89 LYS 89 88 88 LYS LYS A . n
A 1 90 SER 90 89 89 SER SER A . n
A 1 91 PHE 91 90 90 PHE PHE A . n
A 1 92 GLU 92 91 91 GLU GLU A . n
A 1 93 ASP 93 92 92 ASP ASP A . n
A 1 94 ILE 94 93 93 ILE ILE A . n
A 1 95 HIS 95 94 94 HIS HIS A . n
A 1 96 HIS 96 95 95 HIS HIS A . n
A 1 97 TYR 97 96 96 TYR TYR A . n
A 1 98 ARG 98 97 97 ARG ARG A . n
A 1 99 GLU 99 98 98 GLU GLU A . n
A 1 100 GLN 100 99 99 GLN GLN A . n
A 1 101 ILE 101 100 100 ILE ILE A . n
A 1 102 LYS 102 101 101 LYS LYS A . n
A 1 103 ARG 103 102 102 ARG ARG A . n
A 1 104 VAL 104 103 103 VAL VAL A . n
A 1 105 LYS 105 104 104 LYS LYS A . n
A 1 106 ASP 106 105 105 ASP ASP A . n
A 1 107 SER 107 106 106 SER SER A . n
A 1 108 GLU 108 107 107 GLU GLU A . n
A 1 109 ASP 109 108 108 ASP ASP A . n
A 1 110 VAL 110 109 109 VAL VAL A . n
A 1 111 PRO 111 110 110 PRO PRO A . n
A 1 112 MET 112 111 111 MET MET A . n
A 1 113 VAL 113 112 112 VAL VAL A . n
A 1 114 LEU 114 113 113 LEU LEU A . n
A 1 115 VAL 115 114 114 VAL VAL A . n
A 1 116 GLY 116 115 115 GLY GLY A . n
A 1 117 ASN 117 116 116 ASN ASN A . n
A 1 118 LYS 118 117 117 LYS LYS A . n
A 1 119 SER 119 118 118 SER SER A . n
A 1 120 ASP 120 119 119 ASP ASP A . n
A 1 121 LEU 121 120 120 LEU LEU A . n
A 1 122 PRO 122 121 121 PRO PRO A . n
A 1 123 SER 123 122 122 SER SER A . n
A 1 124 ARG 124 123 123 ARG ARG A . n
A 1 125 THR 125 124 124 THR THR A . n
A 1 126 VAL 126 125 125 VAL VAL A . n
A 1 127 ASP 127 126 126 ASP ASP A . n
A 1 128 THR 128 127 127 THR THR A . n
A 1 129 LYS 129 128 128 LYS LYS A . n
A 1 130 GLN 130 129 129 GLN GLN A . n
A 1 131 ALA 131 130 130 ALA ALA A . n
A 1 132 GLN 132 131 131 GLN GLN A . n
A 1 133 ASP 133 132 132 ASP ASP A . n
A 1 134 LEU 134 133 133 LEU LEU A . n
A 1 135 ALA 135 134 134 ALA ALA A . n
A 1 136 ARG 136 135 135 ARG ARG A . n
A 1 137 SER 137 136 136 SER SER A . n
A 1 138 TYR 138 137 137 TYR TYR A . n
A 1 139 GLY 139 138 138 GLY GLY A . n
A 1 140 ILE 140 139 139 ILE ILE A . n
A 1 141 PRO 141 140 140 PRO PRO A . n
A 1 142 PHE 142 141 141 PHE PHE A . n
A 1 143 ILE 143 142 142 ILE ILE A . n
A 1 144 GLU 144 143 143 GLU GLU A . n
A 1 145 THR 145 144 144 THR THR A . n
A 1 146 SER 146 145 145 SER SER A . n
A 1 147 ALA 147 146 146 ALA ALA A . n
A 1 148 LYS 148 147 147 LYS LYS A . n
A 1 149 THR 149 148 148 THR THR A . n
A 1 150 ARG 150 149 149 ARG ARG A . n
A 1 151 GLN 151 150 150 GLN GLN A . n
A 1 152 GLY 152 151 151 GLY GLY A . n
A 1 153 VAL 153 152 152 VAL VAL A . n
A 1 154 ASP 154 153 153 ASP ASP A . n
A 1 155 ASP 155 154 154 ASP ASP A . n
A 1 156 ALA 156 155 155 ALA ALA A . n
A 1 157 PHE 157 156 156 PHE PHE A . n
A 1 158 TYR 158 157 157 TYR TYR A . n
A 1 159 THR 159 158 158 THR THR A . n
A 1 160 LEU 160 159 159 LEU LEU A . n
A 1 161 VAL 161 160 160 VAL VAL A . n
A 1 162 ARG 162 161 161 ARG ARG A . n
A 1 163 GLU 163 162 162 GLU GLU A . n
A 1 164 ILE 164 163 163 ILE ILE A . n
A 1 165 ARG 165 164 164 ARG ARG A . n
A 1 166 LYS 166 165 165 LYS LYS A . n
A 1 167 HIS 167 166 166 HIS HIS A . n
A 1 168 LYS 168 167 167 LYS LYS A . n
A 1 169 GLU 169 168 ? ? ? A . n
A 1 170 LYS 170 169 ? ? ? A . n
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 MG 1 201 200 MG MG A .
C 3 21F 1 202 210 21F LIG A .
D 4 GDP 1 203 220 GDP GDP A .
E 5 HOH 1 301 1 HOH HOH A .
E 5 HOH 2 302 2 HOH HOH A .
E 5 HOH 3 303 3 HOH HOH A .
E 5 HOH 4 304 4 HOH HOH A .
E 5 HOH 5 305 5 HOH HOH A .
E 5 HOH 6 306 6 HOH HOH A .
E 5 HOH 7 307 7 HOH HOH A .
E 5 HOH 8 308 8 HOH HOH A .
E 5 HOH 9 309 9 HOH HOH A .
E 5 HOH 10 310 10 HOH HOH A .
E 5 HOH 11 311 11 HOH HOH A .
E 5 HOH 12 312 12 HOH HOH A .
E 5 HOH 13 313 13 HOH HOH A .
E 5 HOH 14 314 14 HOH HOH A .
E 5 HOH 15 315 15 HOH HOH A .
E 5 HOH 16 316 16 HOH HOH A .
E 5 HOH 17 317 17 HOH HOH A .
E 5 HOH 18 318 18 HOH HOH A .
E 5 HOH 19 319 19 HOH HOH A .
E 5 HOH 20 320 20 HOH HOH A .
E 5 HOH 21 321 21 HOH HOH A .
E 5 HOH 22 322 22 HOH HOH A .
E 5 HOH 23 323 23 HOH HOH A .
E 5 HOH 24 324 24 HOH HOH A .
E 5 HOH 25 325 25 HOH HOH A .
E 5 HOH 26 326 26 HOH HOH A .
E 5 HOH 27 327 27 HOH HOH A .
E 5 HOH 28 328 28 HOH HOH A .
E 5 HOH 29 329 29 HOH HOH A .
E 5 HOH 30 330 30 HOH HOH A .
E 5 HOH 31 331 31 HOH HOH A .
E 5 HOH 32 332 32 HOH HOH A .
E 5 HOH 33 333 33 HOH HOH A .
E 5 HOH 34 334 34 HOH HOH A .
E 5 HOH 35 335 35 HOH HOH A .
E 5 HOH 36 336 36 HOH HOH A .
E 5 HOH 37 337 37 HOH HOH A .
E 5 HOH 38 338 38 HOH HOH A .
E 5 HOH 39 339 39 HOH HOH A .
E 5 HOH 40 340 40 HOH HOH A .
E 5 HOH 41 341 41 HOH HOH A .
E 5 HOH 42 342 42 HOH HOH A .
E 5 HOH 43 343 43 HOH HOH A .
E 5 HOH 44 344 44 HOH HOH A .
E 5 HOH 45 345 45 HOH HOH A .
E 5 HOH 46 346 46 HOH HOH A .
E 5 HOH 47 347 47 HOH HOH A .
E 5 HOH 48 348 48 HOH HOH A .
E 5 HOH 49 349 49 HOH HOH A .
E 5 HOH 50 350 50 HOH HOH A .
E 5 HOH 51 351 51 HOH HOH A .
E 5 HOH 52 352 52 HOH HOH A .
E 5 HOH 53 353 53 HOH HOH A .
E 5 HOH 54 354 54 HOH HOH A .
E 5 HOH 55 355 55 HOH HOH A .
E 5 HOH 56 356 56 HOH HOH A .
E 5 HOH 57 357 57 HOH HOH A .
E 5 HOH 58 358 58 HOH HOH A .
E 5 HOH 59 359 59 HOH HOH A .
E 5 HOH 60 360 60 HOH HOH A .
E 5 HOH 61 361 61 HOH HOH A .
E 5 HOH 62 362 62 HOH HOH A .
E 5 HOH 63 363 63 HOH HOH A .
E 5 HOH 64 364 64 HOH HOH A .
E 5 HOH 65 365 65 HOH HOH A .
E 5 HOH 66 366 66 HOH HOH A .
E 5 HOH 67 367 67 HOH HOH A .
E 5 HOH 68 368 68 HOH HOH A .
E 5 HOH 69 369 69 HOH HOH A .
E 5 HOH 70 370 70 HOH HOH A .
E 5 HOH 71 371 71 HOH HOH A .
E 5 HOH 72 372 72 HOH HOH A .
E 5 HOH 73 373 73 HOH HOH A .
E 5 HOH 74 374 74 HOH HOH A .
E 5 HOH 75 375 75 HOH HOH A .
E 5 HOH 76 376 76 HOH HOH A .
E 5 HOH 77 377 77 HOH HOH A .
E 5 HOH 78 378 78 HOH HOH A .
#
loop_
_pdbx_unobs_or_zero_occ_atoms.id
_pdbx_unobs_or_zero_occ_atoms.PDB_model_num
_pdbx_unobs_or_zero_occ_atoms.polymer_flag
_pdbx_unobs_or_zero_occ_atoms.occupancy_flag
_pdbx_unobs_or_zero_occ_atoms.auth_asym_id
_pdbx_unobs_or_zero_occ_atoms.auth_comp_id
_pdbx_unobs_or_zero_occ_atoms.auth_seq_id
_pdbx_unobs_or_zero_occ_atoms.PDB_ins_code
_pdbx_unobs_or_zero_occ_atoms.auth_atom_id
_pdbx_unobs_or_zero_occ_atoms.label_alt_id
_pdbx_unobs_or_zero_occ_atoms.label_asym_id
_pdbx_unobs_or_zero_occ_atoms.label_comp_id
_pdbx_unobs_or_zero_occ_atoms.label_seq_id
_pdbx_unobs_or_zero_occ_atoms.label_atom_id
1 1 Y 1 A THR 2 ? OG1 ? A THR 3 OG1
2 1 Y 1 A THR 2 ? CG2 ? A THR 3 CG2
3 1 Y 1 A GLU 107 ? CG ? A GLU 108 CG
4 1 Y 1 A GLU 107 ? CD ? A GLU 108 CD
5 1 Y 1 A GLU 107 ? OE1 ? A GLU 108 OE1
6 1 Y 1 A GLU 107 ? OE2 ? A GLU 108 OE2
7 1 Y 1 A ASP 108 ? CG ? A ASP 109 CG
8 1 Y 1 A ASP 108 ? OD1 ? A ASP 109 OD1
9 1 Y 1 A ASP 108 ? OD2 ? A ASP 109 OD2
10 1 Y 1 A LYS 167 ? CG ? A LYS 168 CG
11 1 Y 1 A LYS 167 ? CD ? A LYS 168 CD
12 1 Y 1 A LYS 167 ? CE ? A LYS 168 CE
13 1 Y 1 A LYS 167 ? NZ ? A LYS 168 NZ
#
loop_
_software.pdbx_ordinal
_software.name
_software.version
_software.date
_software.type
_software.contact_author
_software.contact_author_email
_software.classification
_software.location
_software.language
_software.citation_id
1 DENZO . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data reduction'
http://www.hkl-xray.com/ ? ?
2 SCALEPACK . ? package 'Zbyszek Otwinowski' hkl@hkl-xray.com 'data scaling'
http://www.hkl-xray.com/ ? ?
3 PHASER 2.5.2 'Wed Sep 12 05:00:40 2012 (svn )' program 'Randy J. Read' cimr-phaser@lists.cam.ac.uk phasing
http://www-structmed.cimr.cam.ac.uk/phaser/ ? ?
4 PHENIX dev_1402 ? package 'Paul D. Adams' PDAdams@lbl.gov refinement
http://www.phenix-online.org/ C++ ?
5 PDB_EXTRACT 3.11 'April 22, 2011' package PDB deposit@deposit.rcsb.org
'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ?
6 BOS . ? ? ? ?
'data collection' ? ? ?
7 HKL-2000 . ? ? ? ? 'data reduction'
? ? ?
8 HKL-2000 . ? ? ? ? 'data scaling' ?
? ?
#
_cell.length_a 38.775
_cell.length_b 43.195
_cell.length_c 87.536
_cell.angle_alpha 90.000
_cell.angle_beta 90.000
_cell.angle_gamma 90.000
_cell.length_a_esd 0.001
_cell.length_b_esd 0.001
_cell.length_c_esd 0.002
_cell.angle_alpha_esd 0.0
_cell.angle_beta_esd 0.0
_cell.angle_gamma_esd 0.0
_cell.entry_id 4LYJ
_cell.pdbx_unique_axis ?
_cell.Z_PDB 4
#
_symmetry.space_group_name_H-M 'P 21 21 21'
_symmetry.entry_id 4LYJ
_symmetry.pdbx_full_space_group_name_H-M ?
_symmetry.Int_Tables_number 19
_symmetry.cell_setting ?
_symmetry.space_group_name_Hall ?
#
_exptl.crystals_number 1
_exptl.entry_id 4LYJ
_exptl.method 'X-RAY DIFFRACTION'
#
_exptl_crystal.id 1
_exptl_crystal.density_Matthews 1.89
_exptl_crystal.density_meas ?
_exptl_crystal.density_percent_sol 35.06
_exptl_crystal.description ?
_exptl_crystal.F_000 ?
_exptl_crystal.preparation ?
#
_exptl_crystal_grow.crystal_id 1
_exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP'
_exptl_crystal_grow.pH 5.6
_exptl_crystal_grow.temp 293
_exptl_crystal_grow.pdbx_details
'30% PEG4000, 0.2M NH4CH3COO, 0.1M Na-citrate, pH 5.6, vapor diffusion, hanging drop, temperature 293K'
_exptl_crystal_grow.temp_details ?
_exptl_crystal_grow.pdbx_pH_range ?
#
_diffrn.id 1
_diffrn.ambient_temp 100
_diffrn.ambient_temp_details ?
_diffrn.crystal_id 1
#
_diffrn_detector.diffrn_id 1
_diffrn_detector.detector CCD
_diffrn_detector.type 'ADSC QUANTUM 315r'
_diffrn_detector.pdbx_collection_date 2012-11-14
_diffrn_detector.details ?
#
_diffrn_radiation.diffrn_id 1
_diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH'
_diffrn_radiation.monochromator 'Double crystal, Si(111)'
_diffrn_radiation.wavelength_id 1
_diffrn_radiation.pdbx_monochromatic_or_laue_m_l M
_diffrn_radiation.pdbx_scattering_type x-ray
#
_diffrn_radiation_wavelength.id 1
_diffrn_radiation_wavelength.wavelength 1.0000
_diffrn_radiation_wavelength.wt 1.0
#
_diffrn_source.diffrn_id 1
_diffrn_source.source SYNCHROTRON
_diffrn_source.type 'ALS BEAMLINE 8.2.2'
_diffrn_source.pdbx_wavelength_list 1.0000
_diffrn_source.pdbx_wavelength ?
_diffrn_source.pdbx_synchrotron_site ALS
_diffrn_source.pdbx_synchrotron_beamline 8.2.2
#
_reflns.observed_criterion_sigma_I -3
_reflns.observed_criterion_sigma_F 0
_reflns.d_resolution_low 25.00
_reflns.d_resolution_high 1.93
_reflns.number_obs 11573
_reflns.number_all ?
_reflns.percent_possible_obs 100.0
_reflns.pdbx_Rmerge_I_obs 0.170
_reflns.pdbx_Rsym_value 0.170
_reflns.pdbx_netI_over_sigmaI 10.209
_reflns.pdbx_redundancy 7.0
_reflns.entry_id 4LYJ
_reflns.B_iso_Wilson_estimate ?
_reflns.R_free_details ?
_reflns.limit_h_max ?
_reflns.limit_h_min ?
_reflns.limit_k_max ?
_reflns.limit_k_min ?
_reflns.limit_l_max ?
_reflns.limit_l_min ?
_reflns.observed_criterion_F_max ?
_reflns.observed_criterion_F_min ?
_reflns.pdbx_chi_squared ?
_reflns.pdbx_scaling_rejects ?
_reflns.pdbx_ordinal 1
_reflns.pdbx_diffrn_id 1
#
_reflns_shell.d_res_high 1.93
_reflns_shell.d_res_low 1.96
_reflns_shell.percent_possible_all 100.0
_reflns_shell.Rmerge_I_obs 0.382
_reflns_shell.pdbx_Rsym_value 0.382
_reflns_shell.meanI_over_sigI_obs 4.702
_reflns_shell.pdbx_redundancy 7.1
_reflns_shell.percent_possible_obs ?
_reflns_shell.number_unique_all ?
_reflns_shell.number_measured_all ?
_reflns_shell.number_measured_obs ?
_reflns_shell.number_unique_obs ?
_reflns_shell.pdbx_chi_squared ?
_reflns_shell.pdbx_ordinal 1
_reflns_shell.pdbx_diffrn_id 1
#
_refine.entry_id 4LYJ
_refine.ls_d_res_high 1.9270
_refine.ls_d_res_low 24.1790
_refine.pdbx_ls_sigma_F 1.350
_refine.pdbx_data_cutoff_high_absF ?
_refine.pdbx_data_cutoff_low_absF ?
_refine.ls_percent_reflns_obs 99.4400
_refine.ls_number_reflns_obs 11569
_refine.ls_number_reflns_all ?
_refine.pdbx_ls_cross_valid_method ?
_refine.pdbx_R_Free_selection_details ?
_refine.details ?
_refine.ls_R_factor_all ?
_refine.ls_R_factor_obs 0.1821
_refine.ls_R_factor_R_work 0.1793
_refine.ls_wR_factor_R_work ?
_refine.ls_R_factor_R_free 0.2069
_refine.ls_wR_factor_R_free ?
_refine.ls_percent_reflns_R_free 10.0100
_refine.ls_number_reflns_R_free 1158
_refine.ls_R_factor_R_free_error ?
_refine.B_iso_mean 27.8670
_refine.solvent_model_param_bsol ?
_refine.solvent_model_param_ksol ?
_refine.pdbx_isotropic_thermal_model ?
_refine.aniso_B[1][1] ?
_refine.aniso_B[2][2] ?
_refine.aniso_B[3][3] ?
_refine.aniso_B[1][2] ?
_refine.aniso_B[1][3] ?
_refine.aniso_B[2][3] ?
_refine.correlation_coeff_Fo_to_Fc ?
_refine.correlation_coeff_Fo_to_Fc_free ?
_refine.overall_SU_R_Cruickshank_DPI ?
_refine.overall_SU_R_free ?
_refine.pdbx_overall_ESU_R ?
_refine.pdbx_overall_ESU_R_Free ?
_refine.overall_SU_ML 0.1900
_refine.overall_SU_B ?
_refine.solvent_model_details 'FLAT BULK SOLVENT MODEL'
_refine.pdbx_solvent_vdw_probe_radii 1.1100
_refine.pdbx_solvent_ion_probe_radii ?
_refine.pdbx_solvent_shrinkage_radii 0.9000
_refine.ls_number_parameters ?
_refine.ls_number_restraints ?
_refine.pdbx_starting_model 'PDB ENTRY 3GFT'
_refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT'
_refine.pdbx_stereochemistry_target_values ML
_refine.pdbx_stereochem_target_val_spec_case ?
_refine.overall_FOM_work_R_set ?
_refine.B_iso_max 71.060
_refine.B_iso_min 10.450
_refine.pdbx_overall_phase_error 20.3300
_refine.occupancy_max 1.000
_refine.occupancy_min 1.000
_refine.pdbx_ls_sigma_I ?
_refine.ls_redundancy_reflns_obs ?
_refine.ls_R_factor_R_free_error_details ?
_refine.pdbx_data_cutoff_high_rms_absF ?
_refine.overall_FOM_free_R_set ?
_refine.pdbx_diffrn_id 1
_refine.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine.pdbx_TLS_residual_ADP_flag ?
_refine.pdbx_overall_SU_R_free_Cruickshank_DPI ?
_refine.pdbx_overall_SU_R_Blow_DPI ?
_refine.pdbx_overall_SU_R_free_Blow_DPI ?
#
_refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION'
_refine_hist.cycle_id LAST
_refine_hist.pdbx_number_atoms_protein 1315
_refine_hist.pdbx_number_atoms_nucleic_acid 0
_refine_hist.pdbx_number_atoms_ligand 55
_refine_hist.number_atoms_solvent 78
_refine_hist.number_atoms_total 1448
_refine_hist.d_res_high 1.9270
_refine_hist.d_res_low 24.1790
#
loop_
_refine_ls_restr.type
_refine_ls_restr.number
_refine_ls_restr.dev_ideal
_refine_ls_restr.dev_ideal_target
_refine_ls_restr.weight
_refine_ls_restr.pdbx_restraint_function
_refine_ls_restr.pdbx_refine_id
f_bond_d 1394 0.005 ? ? ? 'X-RAY DIFFRACTION'
f_angle_d 1893 0.959 ? ? ? 'X-RAY DIFFRACTION'
f_chiral_restr 210 0.062 ? ? ? 'X-RAY DIFFRACTION'
f_plane_restr 238 0.003 ? ? ? 'X-RAY DIFFRACTION'
f_dihedral_angle_d 533 20.805 ? ? ? 'X-RAY DIFFRACTION'
#
loop_
_refine_ls_shell.d_res_high
_refine_ls_shell.d_res_low
_refine_ls_shell.pdbx_total_number_of_bins_used
_refine_ls_shell.percent_reflns_obs
_refine_ls_shell.number_reflns_R_work
_refine_ls_shell.R_factor_all
_refine_ls_shell.R_factor_R_work
_refine_ls_shell.R_factor_R_free
_refine_ls_shell.percent_reflns_R_free
_refine_ls_shell.number_reflns_R_free
_refine_ls_shell.R_factor_R_free_error
_refine_ls_shell.number_reflns_all
_refine_ls_shell.number_reflns_obs
_refine_ls_shell.redundancy_reflns_obs
_refine_ls_shell.pdbx_refine_id
1.9270 2.0146 8 96.0000 1225 . 0.1828 0.2356 . 136 . 1361 . . 'X-RAY DIFFRACTION'
2.0146 2.1208 8 100.0000 1268 . 0.1796 0.2446 . 141 . 1409 . . 'X-RAY DIFFRACTION'
2.1208 2.2536 8 100.0000 1286 . 0.1769 0.2381 . 143 . 1429 . . 'X-RAY DIFFRACTION'
2.2536 2.4274 8 100.0000 1301 . 0.1825 0.2386 . 145 . 1446 . . 'X-RAY DIFFRACTION'
2.4274 2.6714 8 100.0000 1281 . 0.1903 0.2216 . 142 . 1423 . . 'X-RAY DIFFRACTION'
2.6714 3.0573 8 100.0000 1322 . 0.1925 0.1959 . 147 . 1469 . . 'X-RAY DIFFRACTION'
3.0573 3.8494 8 100.0000 1329 . 0.1761 0.2190 . 147 . 1476 . . 'X-RAY DIFFRACTION'
3.8494 24.1809 8 100.0000 1399 . 0.1710 0.1708 . 157 . 1556 . . 'X-RAY DIFFRACTION'
#
_struct.entry_id 4LYJ
_struct.title
'Crystal Structure of small molecule vinylsulfonamide 9 covalently bound to K-Ras G12C, alternative space group'
_struct.pdbx_model_details ?
_struct.pdbx_CASP_flag ?
_struct.pdbx_model_type_details ?
#
_struct_keywords.entry_id 4LYJ
_struct_keywords.text
'GTPase, GDP bound, small molecule inhibitor, covalent binder, SIGNALING PROTEIN-INHIBITOR complex'
_struct_keywords.pdbx_keywords 'SIGNALING PROTEIN/INHIBITOR'
#
loop_
_struct_asym.id
_struct_asym.pdbx_blank_PDB_chainid_flag
_struct_asym.pdbx_modified
_struct_asym.entity_id
_struct_asym.details
A N N 1 ?
B N N 2 ?
C N N 3 ?
D N N 4 ?
E N N 5 ?
#
_struct_ref.id 1
_struct_ref.db_name UNP
_struct_ref.db_code RASK_HUMAN
_struct_ref.pdbx_db_accession P01116
_struct_ref.entity_id 1
_struct_ref.pdbx_seq_one_letter_code
;MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC
VFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQRVEDAFYTLV
REIRQYRLK
;
_struct_ref.pdbx_align_begin 1
_struct_ref.pdbx_db_isoform ?
#
_struct_ref_seq.align_id 1
_struct_ref_seq.ref_id 1
_struct_ref_seq.pdbx_PDB_id_code 4LYJ
_struct_ref_seq.pdbx_strand_id A
_struct_ref_seq.seq_align_beg 2
_struct_ref_seq.pdbx_seq_align_beg_ins_code ?
_struct_ref_seq.seq_align_end 170
_struct_ref_seq.pdbx_seq_align_end_ins_code ?
_struct_ref_seq.pdbx_db_accession P01116
_struct_ref_seq.db_align_beg 1
_struct_ref_seq.pdbx_db_align_beg_ins_code ?
_struct_ref_seq.db_align_end 169
_struct_ref_seq.pdbx_db_align_end_ins_code ?
_struct_ref_seq.pdbx_auth_seq_align_beg 1
_struct_ref_seq.pdbx_auth_seq_align_end 169
#
loop_
_struct_ref_seq_dif.align_id
_struct_ref_seq_dif.pdbx_pdb_id_code
_struct_ref_seq_dif.mon_id
_struct_ref_seq_dif.pdbx_pdb_strand_id
_struct_ref_seq_dif.seq_num
_struct_ref_seq_dif.pdbx_pdb_ins_code
_struct_ref_seq_dif.pdbx_seq_db_name
_struct_ref_seq_dif.pdbx_seq_db_accession_code
_struct_ref_seq_dif.db_mon_id
_struct_ref_seq_dif.pdbx_seq_db_seq_num
_struct_ref_seq_dif.details
_struct_ref_seq_dif.pdbx_auth_seq_num
_struct_ref_seq_dif.pdbx_ordinal
1 4LYJ GLY A 1 ? UNP P01116 ? ? 'expression tag' 0 1
1 4LYJ CYS A 13 ? UNP P01116 GLY 12 variant 12 2
1 4LYJ SER A 52 ? UNP P01116 CYS 51 'engineered mutation' 51 3
1 4LYJ LEU A 81 ? UNP P01116 CYS 80 'engineered mutation' 80 4
1 4LYJ SER A 119 ? UNP P01116 CYS 118 'engineered mutation' 118 5
1 4LYJ GLY A 152 ? UNP P01116 ARG 151 'SEE REMARK 999' 151 6
1 4LYJ ASP A 154 ? UNP P01116 GLU 153 'SEE REMARK 999' 153 7
1 4LYJ LYS A 166 ? UNP P01116 GLN 165 'SEE REMARK 999' 165 8
1 4LYJ HIS A 167 ? UNP P01116 TYR 166 'SEE REMARK 999' 166 9
1 4LYJ LYS A 168 ? UNP P01116 ARG 167 'SEE REMARK 999' 167 10
1 4LYJ GLU A 169 ? UNP P01116 LEU 168 'SEE REMARK 999' 168 11
#
_pdbx_struct_assembly.id 1
_pdbx_struct_assembly.details author_and_software_defined_assembly
_pdbx_struct_assembly.method_details PISA
_pdbx_struct_assembly.oligomeric_details monomeric
_pdbx_struct_assembly.oligomeric_count 1
#
_pdbx_struct_assembly_gen.assembly_id 1
_pdbx_struct_assembly_gen.oper_expression 1
_pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E
#
_pdbx_struct_oper_list.id 1
_pdbx_struct_oper_list.type 'identity operation'
_pdbx_struct_oper_list.name 1_555
_pdbx_struct_oper_list.symmetry_operation x,y,z
_pdbx_struct_oper_list.matrix[1][1] 1.0000000000
_pdbx_struct_oper_list.matrix[1][2] 0.0000000000
_pdbx_struct_oper_list.matrix[1][3] 0.0000000000
_pdbx_struct_oper_list.vector[1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][1] 0.0000000000
_pdbx_struct_oper_list.matrix[2][2] 1.0000000000
_pdbx_struct_oper_list.matrix[2][3] 0.0000000000
_pdbx_struct_oper_list.vector[2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][1] 0.0000000000
_pdbx_struct_oper_list.matrix[3][2] 0.0000000000
_pdbx_struct_oper_list.matrix[3][3] 1.0000000000
_pdbx_struct_oper_list.vector[3] 0.0000000000
#
_struct_biol.id 1
_struct_biol.details ?
#
loop_
_struct_conf.conf_type_id
_struct_conf.id
_struct_conf.pdbx_PDB_helix_id
_struct_conf.beg_label_comp_id
_struct_conf.beg_label_asym_id
_struct_conf.beg_label_seq_id
_struct_conf.pdbx_beg_PDB_ins_code
_struct_conf.end_label_comp_id
_struct_conf.end_label_asym_id
_struct_conf.end_label_seq_id
_struct_conf.pdbx_end_PDB_ins_code
_struct_conf.beg_auth_comp_id
_struct_conf.beg_auth_asym_id
_struct_conf.beg_auth_seq_id
_struct_conf.end_auth_comp_id
_struct_conf.end_auth_asym_id
_struct_conf.end_auth_seq_id
_struct_conf.pdbx_PDB_helix_class
_struct_conf.details
_struct_conf.pdbx_PDB_helix_length
HELX_P HELX_P1 1 GLY A 16 ? ASN A 27 ? GLY A 15 ASN A 26 1 ? 12
HELX_P HELX_P2 2 GLY A 61 ? GLU A 64 ? GLY A 60 GLU A 63 5 ? 4
HELX_P HELX_P3 3 TYR A 65 ? GLY A 76 ? TYR A 64 GLY A 75 1 ? 12
HELX_P HELX_P4 4 ASN A 87 ? ASP A 93 ? ASN A 86 ASP A 92 1 ? 7
HELX_P HELX_P5 5 ASP A 93 ? LYS A 105 ? ASP A 92 LYS A 104 1 ? 13
HELX_P HELX_P6 6 ASP A 127 ? GLY A 139 ? ASP A 126 GLY A 138 1 ? 13
HELX_P HELX_P7 7 GLY A 152 ? LYS A 166 ? GLY A 151 LYS A 165 1 ? 15
#
_struct_conf_type.id HELX_P
_struct_conf_type.criteria ?
_struct_conf_type.reference ?
#
loop_
_struct_conn.id
_struct_conn.conn_type_id
_struct_conn.pdbx_leaving_atom_flag
_struct_conn.pdbx_PDB_id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.details
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
_struct_conn.pdbx_role
covale1 covale one ? A CYS 13 SG ? ? ? 1_555 C 21F . C17 ? ? A CYS 12 A 21F 202 1_555 ? ? ? ? ? ? ? 1.831 ? ?
metalc1 metalc ? ? A SER 18 OG ? ? ? 1_555 B MG . MG ? ? A SER 17 A MG 201 1_555 ? ? ? ? ? ? ? 2.259 ? ?
metalc2 metalc ? ? A TYR 33 OH ? ? ? 1_555 B MG . MG ? ? A TYR 32 A MG 201 1_555 ? ? ? ? ? ? ? 2.201 ? ?
metalc3 metalc ? ? B MG . MG ? ? ? 1_555 D GDP . O1B ? ? A MG 201 A GDP 203 1_555 ? ? ? ? ? ? ? 2.199 ? ?
metalc4 metalc ? ? B MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 201 A HOH 312 1_555 ? ? ? ? ? ? ? 2.353 ? ?
metalc5 metalc ? ? B MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 201 A HOH 360 1_555 ? ? ? ? ? ? ? 2.167 ? ?
#
loop_
_struct_conn_type.id
_struct_conn_type.criteria
_struct_conn_type.reference
covale ? ?
metalc ? ?
#
loop_
_pdbx_struct_conn_angle.id
_pdbx_struct_conn_angle.ptnr1_label_atom_id
_pdbx_struct_conn_angle.ptnr1_label_alt_id
_pdbx_struct_conn_angle.ptnr1_label_asym_id
_pdbx_struct_conn_angle.ptnr1_label_comp_id
_pdbx_struct_conn_angle.ptnr1_label_seq_id
_pdbx_struct_conn_angle.ptnr1_auth_atom_id
_pdbx_struct_conn_angle.ptnr1_auth_asym_id
_pdbx_struct_conn_angle.ptnr1_auth_comp_id
_pdbx_struct_conn_angle.ptnr1_auth_seq_id
_pdbx_struct_conn_angle.ptnr1_PDB_ins_code
_pdbx_struct_conn_angle.ptnr1_symmetry
_pdbx_struct_conn_angle.ptnr2_label_atom_id
_pdbx_struct_conn_angle.ptnr2_label_alt_id
_pdbx_struct_conn_angle.ptnr2_label_asym_id
_pdbx_struct_conn_angle.ptnr2_label_comp_id
_pdbx_struct_conn_angle.ptnr2_label_seq_id
_pdbx_struct_conn_angle.ptnr2_auth_atom_id
_pdbx_struct_conn_angle.ptnr2_auth_asym_id
_pdbx_struct_conn_angle.ptnr2_auth_comp_id
_pdbx_struct_conn_angle.ptnr2_auth_seq_id
_pdbx_struct_conn_angle.ptnr2_PDB_ins_code
_pdbx_struct_conn_angle.ptnr2_symmetry
_pdbx_struct_conn_angle.ptnr3_label_atom_id
_pdbx_struct_conn_angle.ptnr3_label_alt_id
_pdbx_struct_conn_angle.ptnr3_label_asym_id
_pdbx_struct_conn_angle.ptnr3_label_comp_id
_pdbx_struct_conn_angle.ptnr3_label_seq_id
_pdbx_struct_conn_angle.ptnr3_auth_atom_id
_pdbx_struct_conn_angle.ptnr3_auth_asym_id
_pdbx_struct_conn_angle.ptnr3_auth_comp_id
_pdbx_struct_conn_angle.ptnr3_auth_seq_id
_pdbx_struct_conn_angle.ptnr3_PDB_ins_code
_pdbx_struct_conn_angle.ptnr3_symmetry
_pdbx_struct_conn_angle.value
_pdbx_struct_conn_angle.value_esd
1 OG ? A SER 18 ? A SER 17 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 OH ? A TYR 33 ? A TYR 32 ? 1_555 90.8 ?
2 OG ? A SER 18 ? A SER 17 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O1B ? D GDP . ? A GDP 203 ? 1_555 95.9 ?
3 OH ? A TYR 33 ? A TYR 32 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O1B ? D GDP . ? A GDP 203 ? 1_555 91.6 ?
4 OG ? A SER 18 ? A SER 17 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? E HOH . ? A HOH 312 ? 1_555 92.7 ?
5 OH ? A TYR 33 ? A TYR 32 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? E HOH . ? A HOH 312 ? 1_555 163.7 ?
6 O1B ? D GDP . ? A GDP 203 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? E HOH . ? A HOH 312 ? 1_555 103.8 ?
7 OG ? A SER 18 ? A SER 17 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? E HOH . ? A HOH 360 ? 1_555 143.0 ?
8 OH ? A TYR 33 ? A TYR 32 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? E HOH . ? A HOH 360 ? 1_555 82.1 ?
9 O1B ? D GDP . ? A GDP 203 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? E HOH . ? A HOH 360 ? 1_555 120.4 ?
10 O ? E HOH . ? A HOH 312 ? 1_555 MG ? B MG . ? A MG 201 ? 1_555 O ? E HOH . ? A HOH 360 ? 1_555 85.6 ?
#
_pdbx_modification_feature.ordinal 1
_pdbx_modification_feature.label_comp_id 21F
_pdbx_modification_feature.label_asym_id C
_pdbx_modification_feature.label_seq_id .
_pdbx_modification_feature.label_alt_id ?
_pdbx_modification_feature.modified_residue_label_comp_id CYS
_pdbx_modification_feature.modified_residue_label_asym_id A
_pdbx_modification_feature.modified_residue_label_seq_id 13
_pdbx_modification_feature.modified_residue_label_alt_id ?
_pdbx_modification_feature.auth_comp_id 21F
_pdbx_modification_feature.auth_asym_id A
_pdbx_modification_feature.auth_seq_id 202
_pdbx_modification_feature.PDB_ins_code ?
_pdbx_modification_feature.symmetry 1_555
_pdbx_modification_feature.modified_residue_auth_comp_id CYS
_pdbx_modification_feature.modified_residue_auth_asym_id A
_pdbx_modification_feature.modified_residue_auth_seq_id 12
_pdbx_modification_feature.modified_residue_PDB_ins_code ?
_pdbx_modification_feature.modified_residue_symmetry 1_555
_pdbx_modification_feature.comp_id_linking_atom C17
_pdbx_modification_feature.modified_residue_id_linking_atom SG
_pdbx_modification_feature.modified_residue_id CYS
_pdbx_modification_feature.ref_pcm_id 1
_pdbx_modification_feature.ref_comp_id 21F
_pdbx_modification_feature.type None
_pdbx_modification_feature.category 'Covalent chemical modification'
#
_struct_sheet.id A
_struct_sheet.type ?
_struct_sheet.number_strands 6
_struct_sheet.details ?
#
loop_
_struct_sheet_order.sheet_id
_struct_sheet_order.range_id_1
_struct_sheet_order.range_id_2
_struct_sheet_order.offset
_struct_sheet_order.sense
A 1 2 ? anti-parallel
A 2 3 ? parallel
A 3 4 ? parallel
A 4 5 ? parallel
A 5 6 ? parallel
#
loop_
_struct_sheet_range.sheet_id
_struct_sheet_range.id
_struct_sheet_range.beg_label_comp_id
_struct_sheet_range.beg_label_asym_id
_struct_sheet_range.beg_label_seq_id
_struct_sheet_range.pdbx_beg_PDB_ins_code
_struct_sheet_range.end_label_comp_id
_struct_sheet_range.end_label_asym_id
_struct_sheet_range.end_label_seq_id
_struct_sheet_range.pdbx_end_PDB_ins_code
_struct_sheet_range.beg_auth_comp_id
_struct_sheet_range.beg_auth_asym_id
_struct_sheet_range.beg_auth_seq_id
_struct_sheet_range.end_auth_comp_id
_struct_sheet_range.end_auth_asym_id
_struct_sheet_range.end_auth_seq_id
A 1 SER A 40 ? ILE A 47 ? SER A 39 ILE A 46
A 2 GLU A 50 ? LEU A 57 ? GLU A 49 LEU A 56
A 3 GLU A 4 ? GLY A 11 ? GLU A 3 GLY A 10
A 4 GLY A 78 ? ALA A 84 ? GLY A 77 ALA A 83
A 5 MET A 112 ? ASN A 117 ? MET A 111 ASN A 116
A 6 PHE A 142 ? GLU A 144 ? PHE A 141 GLU A 143
#
loop_
_pdbx_struct_sheet_hbond.sheet_id
_pdbx_struct_sheet_hbond.range_id_1
_pdbx_struct_sheet_hbond.range_id_2
_pdbx_struct_sheet_hbond.range_1_label_atom_id
_pdbx_struct_sheet_hbond.range_1_label_comp_id
_pdbx_struct_sheet_hbond.range_1_label_asym_id
_pdbx_struct_sheet_hbond.range_1_label_seq_id
_pdbx_struct_sheet_hbond.range_1_PDB_ins_code
_pdbx_struct_sheet_hbond.range_1_auth_atom_id
_pdbx_struct_sheet_hbond.range_1_auth_comp_id
_pdbx_struct_sheet_hbond.range_1_auth_asym_id
_pdbx_struct_sheet_hbond.range_1_auth_seq_id
_pdbx_struct_sheet_hbond.range_2_label_atom_id
_pdbx_struct_sheet_hbond.range_2_label_comp_id
_pdbx_struct_sheet_hbond.range_2_label_asym_id
_pdbx_struct_sheet_hbond.range_2_label_seq_id
_pdbx_struct_sheet_hbond.range_2_PDB_ins_code
_pdbx_struct_sheet_hbond.range_2_auth_atom_id
_pdbx_struct_sheet_hbond.range_2_auth_comp_id
_pdbx_struct_sheet_hbond.range_2_auth_asym_id
_pdbx_struct_sheet_hbond.range_2_auth_seq_id
A 1 2 N VAL A 45 ? N VAL A 44 O SER A 52 ? O SER A 51
A 2 3 O ASP A 55 ? O ASP A 54 N TYR A 5 ? N TYR A 4
A 3 4 N VAL A 10 ? N VAL A 9 O VAL A 82 ? O VAL A 81
A 4 5 N PHE A 83 ? N PHE A 82 O ASN A 117 ? O ASN A 116
A 5 6 N LEU A 114 ? N LEU A 113 O ILE A 143 ? O ILE A 142
#
loop_
_struct_site.id
_struct_site.pdbx_evidence_code
_struct_site.pdbx_auth_asym_id
_struct_site.pdbx_auth_comp_id
_struct_site.pdbx_auth_seq_id
_struct_site.pdbx_auth_ins_code
_struct_site.pdbx_num_residues
_struct_site.details
AC1 Software A MG 201 ? 5 'BINDING SITE FOR RESIDUE MG A 201'
AC2 Software A 21F 202 ? 12 'BINDING SITE FOR RESIDUE 21F A 202'
AC3 Software A GDP 203 ? 25 'BINDING SITE FOR RESIDUE GDP A 203'
#
loop_
_struct_site_gen.id
_struct_site_gen.site_id
_struct_site_gen.pdbx_num_res
_struct_site_gen.label_comp_id
_struct_site_gen.label_asym_id
_struct_site_gen.label_seq_id
_struct_site_gen.pdbx_auth_ins_code
_struct_site_gen.auth_comp_id
_struct_site_gen.auth_asym_id
_struct_site_gen.auth_seq_id
_struct_site_gen.label_atom_id
_struct_site_gen.label_alt_id
_struct_site_gen.symmetry
_struct_site_gen.details
1 AC1 5 SER A 18 ? SER A 17 . ? 1_555 ?
2 AC1 5 TYR A 33 ? TYR A 32 . ? 1_555 ?
3 AC1 5 GDP D . ? GDP A 203 . ? 1_555 ?
4 AC1 5 HOH E . ? HOH A 312 . ? 1_555 ?
5 AC1 5 HOH E . ? HOH A 360 . ? 1_555 ?
6 AC2 12 VAL A 10 ? VAL A 9 . ? 1_555 ?
7 AC2 12 GLY A 11 ? GLY A 10 . ? 1_555 ?
8 AC2 12 CYS A 13 ? CYS A 12 . ? 1_555 ?
9 AC2 12 THR A 59 ? THR A 58 . ? 1_555 ?
10 AC2 12 GLU A 63 ? GLU A 62 . ? 1_555 ?
11 AC2 12 GLU A 64 ? GLU A 63 . ? 1_555 ?
12 AC2 12 ARG A 69 ? ARG A 68 . ? 1_555 ?
13 AC2 12 TYR A 72 ? TYR A 71 . ? 1_555 ?
14 AC2 12 MET A 73 ? MET A 72 . ? 1_555 ?
15 AC2 12 TYR A 97 ? TYR A 96 . ? 1_555 ?
16 AC2 12 GLN A 100 ? GLN A 99 . ? 1_555 ?
17 AC2 12 HOH E . ? HOH A 362 . ? 1_555 ?
18 AC3 25 ALA A 12 ? ALA A 11 . ? 1_555 ?
19 AC3 25 GLY A 14 ? GLY A 13 . ? 1_555 ?
20 AC3 25 VAL A 15 ? VAL A 14 . ? 1_555 ?
21 AC3 25 GLY A 16 ? GLY A 15 . ? 1_555 ?
22 AC3 25 LYS A 17 ? LYS A 16 . ? 1_555 ?
23 AC3 25 SER A 18 ? SER A 17 . ? 1_555 ?
24 AC3 25 ALA A 19 ? ALA A 18 . ? 1_555 ?
25 AC3 25 PHE A 29 ? PHE A 28 . ? 1_555 ?
26 AC3 25 VAL A 30 ? VAL A 29 . ? 1_555 ?
27 AC3 25 ASP A 31 ? ASP A 30 . ? 1_555 ?
28 AC3 25 TYR A 33 ? TYR A 32 . ? 1_555 ?
29 AC3 25 ASN A 117 ? ASN A 116 . ? 1_555 ?
30 AC3 25 LYS A 118 ? LYS A 117 . ? 1_555 ?
31 AC3 25 ASP A 120 ? ASP A 119 . ? 1_555 ?
32 AC3 25 LEU A 121 ? LEU A 120 . ? 1_555 ?
33 AC3 25 SER A 146 ? SER A 145 . ? 1_555 ?
34 AC3 25 ALA A 147 ? ALA A 146 . ? 1_555 ?
35 AC3 25 LYS A 148 ? LYS A 147 . ? 1_555 ?
36 AC3 25 MG B . ? MG A 201 . ? 1_555 ?
37 AC3 25 HOH E . ? HOH A 307 . ? 1_555 ?
38 AC3 25 HOH E . ? HOH A 322 . ? 1_555 ?
39 AC3 25 HOH E . ? HOH A 330 . ? 1_555 ?
40 AC3 25 HOH E . ? HOH A 335 . ? 1_555 ?
41 AC3 25 HOH E . ? HOH A 350 . ? 1_555 ?
42 AC3 25 HOH E . ? HOH A 374 . ? 1_555 ?
#
_pdbx_entry_details.sequence_details
;THE SEQUENCE IN THE STRUCTURE REPRESENTS ISOFORM 2B OF GTPASE KRAS. THIS ISOFORM DIFFERS FROM THE CANONICAL SEQUENCE AS FOLLOW: 151-153 (RVE TO GVD) AND 165-169 (QYRLK TO KHKEK)
;
_pdbx_entry_details.entry_id 4LYJ
_pdbx_entry_details.nonpolymer_details ?
_pdbx_entry_details.compound_details ?
_pdbx_entry_details.source_details ?
_pdbx_entry_details.has_ligand_of_interest ?
_pdbx_entry_details.has_protein_modification Y
#
_pdbx_validate_torsion.id 1
_pdbx_validate_torsion.PDB_model_num 1
_pdbx_validate_torsion.auth_comp_id ASP
_pdbx_validate_torsion.auth_asym_id A
_pdbx_validate_torsion.auth_seq_id 108
_pdbx_validate_torsion.PDB_ins_code ?
_pdbx_validate_torsion.label_alt_id ?
_pdbx_validate_torsion.phi 58.57
_pdbx_validate_torsion.psi 85.86
#
_diffrn_reflns.av_R_equivalents 0.170
_diffrn_reflns.number 81041
_diffrn_reflns.diffrn_id 1
#
loop_
_pdbx_refine_tls.pdbx_refine_id
_pdbx_refine_tls.id
_pdbx_refine_tls.details
_pdbx_refine_tls.method
_pdbx_refine_tls.origin_x
_pdbx_refine_tls.origin_y
_pdbx_refine_tls.origin_z
_pdbx_refine_tls.T[1][1]
_pdbx_refine_tls.T[2][2]
_pdbx_refine_tls.T[3][3]
_pdbx_refine_tls.T[1][2]
_pdbx_refine_tls.T[1][3]
_pdbx_refine_tls.T[2][3]
_pdbx_refine_tls.L[1][1]
_pdbx_refine_tls.L[2][2]
_pdbx_refine_tls.L[3][3]
_pdbx_refine_tls.L[1][2]
_pdbx_refine_tls.L[1][3]
_pdbx_refine_tls.L[2][3]
_pdbx_refine_tls.S[1][1]
_pdbx_refine_tls.S[2][2]
_pdbx_refine_tls.S[3][3]
_pdbx_refine_tls.S[1][2]
_pdbx_refine_tls.S[1][3]
_pdbx_refine_tls.S[2][3]
_pdbx_refine_tls.S[2][1]
_pdbx_refine_tls.S[3][1]
_pdbx_refine_tls.S[3][2]
'X-RAY DIFFRACTION' 1 ? refined -12.3734 4.7295 7.4285 0.1691 0.1329 0.1500 0.0291 -0.0193 0.0143 4.3524 2.1824 2.8759 0.6860
0.2227 -0.3968 0.0676 0.0087 -0.0677 0.0154 0.2686 0.3188 -0.1030 -0.2786 -0.3814
'X-RAY DIFFRACTION' 2 ? refined -6.4448 12.2016 3.1923 0.4627 0.2624 0.3687 -0.0121 0.0101 -0.0829 1.3818 4.3664 1.6984
-1.2377 -1.4329 1.1596 0.3401 -0.1516 -0.0543 -0.1316 0.7990 -0.1282 -0.4512 -0.9346 -0.1151
'X-RAY DIFFRACTION' 3 ? refined -16.1784 8.3813 12.0375 0.1843 0.1930 0.2228 0.0122 0.0060 -0.0352 5.4808 2.4798 8.1264 2.6228
6.0889 2.6632 -0.2101 -0.0008 0.2223 0.0702 0.4097 0.2076 0.0314 -0.2500 0.0436
'X-RAY DIFFRACTION' 4 ? refined -9.7321 -3.6623 17.8676 0.1799 0.1585 0.1255 -0.0287 -0.0154 0.0283 3.9712 3.0772 2.9816
-1.2180 -0.5684 1.5814 -0.0668 -0.0383 0.0984 -0.5434 -0.1536 0.1042 0.3303 0.2655 -0.0029
'X-RAY DIFFRACTION' 5 ? refined -4.3564 -12.8924 9.4498 0.2805 0.1850 0.3006 0.0442 0.0038 0.0257 4.0681 2.9802 3.4679 1.6173
-2.4485 -1.5929 -0.2097 -0.1542 0.2965 -0.2015 -0.9319 -0.3901 0.1041 0.5007 0.1662
'X-RAY DIFFRACTION' 6 ? refined -9.9369 -6.3500 2.9859 0.2322 0.1620 0.1900 -0.0036 -0.0341 -0.0319 5.6526 7.7734 5.8422 5.4062
-5.2603 -6.2067 -0.2611 -0.0362 0.2120 0.1796 -0.1120 -0.1244 -0.6036 0.5919 -0.1494
'X-RAY DIFFRACTION' 7 ? refined -21.9043 -3.4415 7.8489 0.2591 0.2674 0.2129 -0.0655 -0.0656 -0.0089 1.9962 5.1823 6.7300
-1.0661 -2.6182 1.8057 0.0846 -0.3615 0.1455 0.2750 -0.6615 0.3569 0.2428 0.5546 -0.6695
#
loop_
_pdbx_refine_tls_group.pdbx_refine_id
_pdbx_refine_tls_group.id
_pdbx_refine_tls_group.refine_tls_id
_pdbx_refine_tls_group.beg_auth_asym_id
_pdbx_refine_tls_group.beg_auth_seq_id
_pdbx_refine_tls_group.end_auth_asym_id
_pdbx_refine_tls_group.end_auth_seq_id
_pdbx_refine_tls_group.selection_details
_pdbx_refine_tls_group.beg_label_asym_id
_pdbx_refine_tls_group.beg_label_seq_id
_pdbx_refine_tls_group.end_label_asym_id
_pdbx_refine_tls_group.end_label_seq_id
_pdbx_refine_tls_group.selection
'X-RAY DIFFRACTION' 1 1 A 0 A 0
;chain 'A' and (resid 2 through 25 )
;
? ? ? ? ?
'X-RAY DIFFRACTION' 2 2 A 0 A 0
;chain 'A' and (resid 26 through 38 )
;
? ? ? ? ?
'X-RAY DIFFRACTION' 3 3 A 0 A 0
;chain 'A' and (resid 39 through 74 )
;
? ? ? ? ?
'X-RAY DIFFRACTION' 4 4 A 0 A 0
;chain 'A' and (resid 75 through 116 )
;
? ? ? ? ?
'X-RAY DIFFRACTION' 5 5 A 0 A 0
;chain 'A' and (resid 117 through 137 )
;
? ? ? ? ?
'X-RAY DIFFRACTION' 6 6 A 0 A 0
;chain 'A' and (resid 138 through 151 )
;
? ? ? ? ?
'X-RAY DIFFRACTION' 7 7 A 0 A 0
;chain 'A' and (resid 152 through 167 )
;
? ? ? ? ?
#
_pdbx_phasing_MR.entry_id 4LYJ
_pdbx_phasing_MR.method_rotation ?
_pdbx_phasing_MR.method_translation ?
_pdbx_phasing_MR.model_details ?
_pdbx_phasing_MR.R_factor ?
_pdbx_phasing_MR.R_rigid_body ?
_pdbx_phasing_MR.correlation_coeff_Fo_to_Fc ?
_pdbx_phasing_MR.correlation_coeff_Io_to_Ic ?
_pdbx_phasing_MR.d_res_high_rotation 1.930
_pdbx_phasing_MR.d_res_low_rotation 24.180
_pdbx_phasing_MR.d_res_high_translation 1.930
_pdbx_phasing_MR.d_res_low_translation 24.180
_pdbx_phasing_MR.packing ?
_pdbx_phasing_MR.reflns_percent_rotation ?
_pdbx_phasing_MR.reflns_percent_translation ?
_pdbx_phasing_MR.sigma_F_rotation ?
_pdbx_phasing_MR.sigma_F_translation ?
_pdbx_phasing_MR.sigma_I_rotation ?
_pdbx_phasing_MR.sigma_I_translation ?
#
_phasing.method MR
#
loop_
_pdbx_unobs_or_zero_occ_residues.id
_pdbx_unobs_or_zero_occ_residues.PDB_model_num
_pdbx_unobs_or_zero_occ_residues.polymer_flag
_pdbx_unobs_or_zero_occ_residues.occupancy_flag
_pdbx_unobs_or_zero_occ_residues.auth_asym_id
_pdbx_unobs_or_zero_occ_residues.auth_comp_id
_pdbx_unobs_or_zero_occ_residues.auth_seq_id
_pdbx_unobs_or_zero_occ_residues.PDB_ins_code
_pdbx_unobs_or_zero_occ_residues.label_asym_id
_pdbx_unobs_or_zero_occ_residues.label_comp_id
_pdbx_unobs_or_zero_occ_residues.label_seq_id
1 1 Y 1 A GLY 0 ? A GLY 1
2 1 Y 1 A MET 1 ? A MET 2
3 1 Y 1 A GLU 168 ? A GLU 169
4 1 Y 1 A LYS 169 ? A LYS 170
#
_cell_measurement.reflns_used 81041
_cell_measurement.entry_id 4LYJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_ordinal
21F C13 C N N 1
21F C17 C N N 2
21F C20 C N N 3
21F C21 C N N 4
21F C26 C Y N 5
21F CL1 CL N N 6
21F C02 C Y N 7
21F C03 C Y N 8
21F I04 I N N 9
21F C05 C Y N 10
21F C06 C Y N 11
21F N07 N N N 12
21F C08 C N N 13
21F C09 C N N 14
21F N10 N N N 15
21F C11 C N N 16
21F C12 C N N 17
21F N14 N N N 18
21F S15 S N N 19
21F C16 C N N 20
21F O18 O N N 21
21F O19 O N N 22
21F O22 O N N 23
21F C23 C Y N 24
21F O24 O N N 25
21F C25 C N N 26
21F H131 H N N 27
21F H171 H N N 28
21F H172 H N N 29
21F H1 H N N 30
21F H201 H N N 31
21F H202 H N N 32
21F H211 H N N 33
21F H212 H N N 34
21F H261 H N N 35
21F H051 H N N 36
21F H071 H N N 37
21F H081 H N N 38
21F H082 H N N 39
21F H111 H N N 40
21F H112 H N N 41
21F H121 H N N 42
21F H122 H N N 43
21F H141 H N N 44
21F H161 H N N 45
21F H162 H N N 46
21F H251 H N N 47
21F H252 H N N 48
21F H253 H N N 49
ALA N N N N 50
ALA CA C N S 51
ALA C C N N 52
ALA O O N N 53
ALA CB C N N 54
ALA OXT O N N 55
ALA H H N N 56
ALA H2 H N N 57
ALA HA H N N 58
ALA HB1 H N N 59
ALA HB2 H N N 60
ALA HB3 H N N 61
ALA HXT H N N 62
ARG N N N N 63
ARG CA C N S 64
ARG C C N N 65
ARG O O N N 66
ARG CB C N N 67
ARG CG C N N 68
ARG CD C N N 69
ARG NE N N N 70
ARG CZ C N N 71
ARG NH1 N N N 72
ARG NH2 N N N 73
ARG OXT O N N 74
ARG H H N N 75
ARG H2 H N N 76
ARG HA H N N 77
ARG HB2 H N N 78
ARG HB3 H N N 79
ARG HG2 H N N 80
ARG HG3 H N N 81
ARG HD2 H N N 82
ARG HD3 H N N 83
ARG HE H N N 84
ARG HH11 H N N 85
ARG HH12 H N N 86
ARG HH21 H N N 87
ARG HH22 H N N 88
ARG HXT H N N 89
ASN N N N N 90
ASN CA C N S 91
ASN C C N N 92
ASN O O N N 93
ASN CB C N N 94
ASN CG C N N 95
ASN OD1 O N N 96
ASN ND2 N N N 97
ASN OXT O N N 98
ASN H H N N 99
ASN H2 H N N 100
ASN HA H N N 101
ASN HB2 H N N 102
ASN HB3 H N N 103
ASN HD21 H N N 104
ASN HD22 H N N 105
ASN HXT H N N 106
ASP N N N N 107
ASP CA C N S 108
ASP C C N N 109
ASP O O N N 110
ASP CB C N N 111
ASP CG C N N 112
ASP OD1 O N N 113
ASP OD2 O N N 114
ASP OXT O N N 115
ASP H H N N 116
ASP H2 H N N 117
ASP HA H N N 118
ASP HB2 H N N 119
ASP HB3 H N N 120
ASP HD2 H N N 121
ASP HXT H N N 122
CYS N N N N 123
CYS CA C N R 124
CYS C C N N 125
CYS O O N N 126
CYS CB C N N 127
CYS SG S N N 128
CYS OXT O N N 129
CYS H H N N 130
CYS H2 H N N 131
CYS HA H N N 132
CYS HB2 H N N 133
CYS HB3 H N N 134
CYS HG H N N 135
CYS HXT H N N 136
GDP PB P N N 137
GDP O1B O N N 138
GDP O2B O N N 139
GDP O3B O N N 140
GDP O3A O N N 141
GDP PA P N N 142
GDP O1A O N N 143
GDP O2A O N N 144
GDP "O5'" O N N 145
GDP "C5'" C N N 146
GDP "C4'" C N R 147
GDP "O4'" O N N 148
GDP "C3'" C N S 149
GDP "O3'" O N N 150
GDP "C2'" C N R 151
GDP "O2'" O N N 152
GDP "C1'" C N R 153
GDP N9 N Y N 154
GDP C8 C Y N 155
GDP N7 N Y N 156
GDP C5 C Y N 157
GDP C6 C N N 158
GDP O6 O N N 159
GDP N1 N N N 160
GDP C2 C N N 161
GDP N2 N N N 162
GDP N3 N N N 163
GDP C4 C Y N 164
GDP HOB2 H N N 165
GDP HOB3 H N N 166
GDP HOA2 H N N 167
GDP "H5'" H N N 168
GDP "H5''" H N N 169
GDP "H4'" H N N 170
GDP "H3'" H N N 171
GDP "HO3'" H N N 172
GDP "H2'" H N N 173
GDP "HO2'" H N N 174
GDP "H1'" H N N 175
GDP H8 H N N 176
GDP HN1 H N N 177
GDP HN21 H N N 178
GDP HN22 H N N 179
GLN N N N N 180
GLN CA C N S 181
GLN C C N N 182
GLN O O N N 183
GLN CB C N N 184
GLN CG C N N 185
GLN CD C N N 186
GLN OE1 O N N 187
GLN NE2 N N N 188
GLN OXT O N N 189
GLN H H N N 190
GLN H2 H N N 191
GLN HA H N N 192
GLN HB2 H N N 193
GLN HB3 H N N 194
GLN HG2 H N N 195
GLN HG3 H N N 196
GLN HE21 H N N 197
GLN HE22 H N N 198
GLN HXT H N N 199
GLU N N N N 200
GLU CA C N S 201
GLU C C N N 202
GLU O O N N 203
GLU CB C N N 204
GLU CG C N N 205
GLU CD C N N 206
GLU OE1 O N N 207
GLU OE2 O N N 208
GLU OXT O N N 209
GLU H H N N 210
GLU H2 H N N 211
GLU HA H N N 212
GLU HB2 H N N 213
GLU HB3 H N N 214
GLU HG2 H N N 215
GLU HG3 H N N 216
GLU HE2 H N N 217
GLU HXT H N N 218
GLY N N N N 219
GLY CA C N N 220
GLY C C N N 221
GLY O O N N 222
GLY OXT O N N 223
GLY H H N N 224
GLY H2 H N N 225
GLY HA2 H N N 226
GLY HA3 H N N 227
GLY HXT H N N 228
HIS N N N N 229
HIS CA C N S 230
HIS C C N N 231
HIS O O N N 232
HIS CB C N N 233
HIS CG C Y N 234
HIS ND1 N Y N 235
HIS CD2 C Y N 236
HIS CE1 C Y N 237
HIS NE2 N Y N 238
HIS OXT O N N 239
HIS H H N N 240
HIS H2 H N N 241
HIS HA H N N 242
HIS HB2 H N N 243
HIS HB3 H N N 244
HIS HD1 H N N 245
HIS HD2 H N N 246
HIS HE1 H N N 247
HIS HE2 H N N 248
HIS HXT H N N 249
HOH O O N N 250
HOH H1 H N N 251
HOH H2 H N N 252
ILE N N N N 253
ILE CA C N S 254
ILE C C N N 255
ILE O O N N 256
ILE CB C N S 257
ILE CG1 C N N 258
ILE CG2 C N N 259
ILE CD1 C N N 260
ILE OXT O N N 261
ILE H H N N 262
ILE H2 H N N 263
ILE HA H N N 264
ILE HB H N N 265
ILE HG12 H N N 266
ILE HG13 H N N 267
ILE HG21 H N N 268
ILE HG22 H N N 269
ILE HG23 H N N 270
ILE HD11 H N N 271
ILE HD12 H N N 272
ILE HD13 H N N 273
ILE HXT H N N 274
LEU N N N N 275
LEU CA C N S 276
LEU C C N N 277
LEU O O N N 278
LEU CB C N N 279
LEU CG C N N 280
LEU CD1 C N N 281
LEU CD2 C N N 282
LEU OXT O N N 283
LEU H H N N 284
LEU H2 H N N 285
LEU HA H N N 286
LEU HB2 H N N 287
LEU HB3 H N N 288
LEU HG H N N 289
LEU HD11 H N N 290
LEU HD12 H N N 291
LEU HD13 H N N 292
LEU HD21 H N N 293
LEU HD22 H N N 294
LEU HD23 H N N 295
LEU HXT H N N 296
LYS N N N N 297
LYS CA C N S 298
LYS C C N N 299
LYS O O N N 300
LYS CB C N N 301
LYS CG C N N 302
LYS CD C N N 303
LYS CE C N N 304
LYS NZ N N N 305
LYS OXT O N N 306
LYS H H N N 307
LYS H2 H N N 308
LYS HA H N N 309
LYS HB2 H N N 310
LYS HB3 H N N 311
LYS HG2 H N N 312
LYS HG3 H N N 313
LYS HD2 H N N 314
LYS HD3 H N N 315
LYS HE2 H N N 316
LYS HE3 H N N 317
LYS HZ1 H N N 318
LYS HZ2 H N N 319
LYS HZ3 H N N 320
LYS HXT H N N 321
MET N N N N 322
MET CA C N S 323
MET C C N N 324
MET O O N N 325
MET CB C N N 326
MET CG C N N 327
MET SD S N N 328
MET CE C N N 329
MET OXT O N N 330
MET H H N N 331
MET H2 H N N 332
MET HA H N N 333
MET HB2 H N N 334
MET HB3 H N N 335
MET HG2 H N N 336
MET HG3 H N N 337
MET HE1 H N N 338
MET HE2 H N N 339
MET HE3 H N N 340
MET HXT H N N 341
MG MG MG N N 342
PHE N N N N 343
PHE CA C N S 344
PHE C C N N 345
PHE O O N N 346
PHE CB C N N 347
PHE CG C Y N 348
PHE CD1 C Y N 349
PHE CD2 C Y N 350
PHE CE1 C Y N 351
PHE CE2 C Y N 352
PHE CZ C Y N 353
PHE OXT O N N 354
PHE H H N N 355
PHE H2 H N N 356
PHE HA H N N 357
PHE HB2 H N N 358
PHE HB3 H N N 359
PHE HD1 H N N 360
PHE HD2 H N N 361
PHE HE1 H N N 362
PHE HE2 H N N 363
PHE HZ H N N 364
PHE HXT H N N 365
PRO N N N N 366
PRO CA C N S 367
PRO C C N N 368
PRO O O N N 369
PRO CB C N N 370
PRO CG C N N 371
PRO CD C N N 372
PRO OXT O N N 373
PRO H H N N 374
PRO HA H N N 375
PRO HB2 H N N 376
PRO HB3 H N N 377
PRO HG2 H N N 378
PRO HG3 H N N 379
PRO HD2 H N N 380
PRO HD3 H N N 381
PRO HXT H N N 382
SER N N N N 383
SER CA C N S 384
SER C C N N 385
SER O O N N 386
SER CB C N N 387
SER OG O N N 388
SER OXT O N N 389
SER H H N N 390
SER H2 H N N 391
SER HA H N N 392
SER HB2 H N N 393
SER HB3 H N N 394
SER HG H N N 395
SER HXT H N N 396
THR N N N N 397
THR CA C N S 398
THR C C N N 399
THR O O N N 400
THR CB C N R 401
THR OG1 O N N 402
THR CG2 C N N 403
THR OXT O N N 404
THR H H N N 405
THR H2 H N N 406
THR HA H N N 407
THR HB H N N 408
THR HG1 H N N 409
THR HG21 H N N 410
THR HG22 H N N 411
THR HG23 H N N 412
THR HXT H N N 413
TYR N N N N 414
TYR CA C N S 415
TYR C C N N 416
TYR O O N N 417
TYR CB C N N 418
TYR CG C Y N 419
TYR CD1 C Y N 420
TYR CD2 C Y N 421
TYR CE1 C Y N 422
TYR CE2 C Y N 423
TYR CZ C Y N 424
TYR OH O N N 425
TYR OXT O N N 426
TYR H H N N 427
TYR H2 H N N 428
TYR HA H N N 429
TYR HB2 H N N 430
TYR HB3 H N N 431
TYR HD1 H N N 432
TYR HD2 H N N 433
TYR HE1 H N N 434
TYR HE2 H N N 435
TYR HH H N N 436
TYR HXT H N N 437
VAL N N N N 438
VAL CA C N S 439
VAL C C N N 440
VAL O O N N 441
VAL CB C N N 442
VAL CG1 C N N 443
VAL CG2 C N N 444
VAL OXT O N N 445
VAL H H N N 446
VAL H2 H N N 447
VAL HA H N N 448
VAL HB H N N 449
VAL HG11 H N N 450
VAL HG12 H N N 451
VAL HG13 H N N 452
VAL HG21 H N N 453
VAL HG22 H N N 454
VAL HG23 H N N 455
VAL HXT H N N 456
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
21F C13 C20 sing N N 1
21F C13 C12 sing N N 2
21F C13 N14 sing N N 3
21F C17 C16 sing N N 4
21F C20 C21 sing N N 5
21F C21 N10 sing N N 6
21F C26 C02 doub Y N 7
21F C26 C23 sing Y N 8
21F CL1 C02 sing N N 9
21F C02 C03 sing Y N 10
21F C03 I04 sing N N 11
21F C03 C05 doub Y N 12
21F C05 C06 sing Y N 13
21F C06 N07 sing N N 14
21F C06 C23 doub Y N 15
21F N07 C08 sing N N 16
21F C08 C09 sing N N 17
21F C09 N10 sing N N 18
21F C09 O22 doub N N 19
21F N10 C11 sing N N 20
21F C11 C12 sing N N 21
21F N14 S15 sing N N 22
21F S15 C16 sing N N 23
21F S15 O18 doub N N 24
21F S15 O19 doub N N 25
21F C23 O24 sing N N 26
21F O24 C25 sing N N 27
21F C13 H131 sing N N 28
21F C17 H171 sing N N 29
21F C17 H172 sing N N 30
21F C17 H1 sing N N 31
21F C20 H201 sing N N 32
21F C20 H202 sing N N 33
21F C21 H211 sing N N 34
21F C21 H212 sing N N 35
21F C26 H261 sing N N 36
21F C05 H051 sing N N 37
21F N07 H071 sing N N 38
21F C08 H081 sing N N 39
21F C08 H082 sing N N 40
21F C11 H111 sing N N 41
21F C11 H112 sing N N 42
21F C12 H121 sing N N 43
21F C12 H122 sing N N 44
21F N14 H141 sing N N 45
21F C16 H161 sing N N 46
21F C16 H162 sing N N 47
21F C25 H251 sing N N 48
21F C25 H252 sing N N 49
21F C25 H253 sing N N 50
ALA N CA sing N N 51
ALA N H sing N N 52
ALA N H2 sing N N 53
ALA CA C sing N N 54
ALA CA CB sing N N 55
ALA CA HA sing N N 56
ALA C O doub N N 57
ALA C OXT sing N N 58
ALA CB HB1 sing N N 59
ALA CB HB2 sing N N 60
ALA CB HB3 sing N N 61
ALA OXT HXT sing N N 62
ARG N CA sing N N 63
ARG N H sing N N 64
ARG N H2 sing N N 65
ARG CA C sing N N 66
ARG CA CB sing N N 67
ARG CA HA sing N N 68
ARG C O doub N N 69
ARG C OXT sing N N 70
ARG CB CG sing N N 71
ARG CB HB2 sing N N 72
ARG CB HB3 sing N N 73
ARG CG CD sing N N 74
ARG CG HG2 sing N N 75
ARG CG HG3 sing N N 76
ARG CD NE sing N N 77
ARG CD HD2 sing N N 78
ARG CD HD3 sing N N 79
ARG NE CZ sing N N 80
ARG NE HE sing N N 81
ARG CZ NH1 sing N N 82
ARG CZ NH2 doub N N 83
ARG NH1 HH11 sing N N 84
ARG NH1 HH12 sing N N 85
ARG NH2 HH21 sing N N 86
ARG NH2 HH22 sing N N 87
ARG OXT HXT sing N N 88
ASN N CA sing N N 89
ASN N H sing N N 90
ASN N H2 sing N N 91
ASN CA C sing N N 92
ASN CA CB sing N N 93
ASN CA HA sing N N 94
ASN C O doub N N 95
ASN C OXT sing N N 96
ASN CB CG sing N N 97
ASN CB HB2 sing N N 98
ASN CB HB3 sing N N 99
ASN CG OD1 doub N N 100
ASN CG ND2 sing N N 101
ASN ND2 HD21 sing N N 102
ASN ND2 HD22 sing N N 103
ASN OXT HXT sing N N 104
ASP N CA sing N N 105
ASP N H sing N N 106
ASP N H2 sing N N 107
ASP CA C sing N N 108
ASP CA CB sing N N 109
ASP CA HA sing N N 110
ASP C O doub N N 111
ASP C OXT sing N N 112
ASP CB CG sing N N 113
ASP CB HB2 sing N N 114
ASP CB HB3 sing N N 115
ASP CG OD1 doub N N 116
ASP CG OD2 sing N N 117
ASP OD2 HD2 sing N N 118
ASP OXT HXT sing N N 119
CYS N CA sing N N 120
CYS N H sing N N 121
CYS N H2 sing N N 122
CYS CA C sing N N 123
CYS CA CB sing N N 124
CYS CA HA sing N N 125
CYS C O doub N N 126
CYS C OXT sing N N 127
CYS CB SG sing N N 128
CYS CB HB2 sing N N 129
CYS CB HB3 sing N N 130
CYS SG HG sing N N 131
CYS OXT HXT sing N N 132
GDP PB O1B doub N N 133
GDP PB O2B sing N N 134
GDP PB O3B sing N N 135
GDP PB O3A sing N N 136
GDP O2B HOB2 sing N N 137
GDP O3B HOB3 sing N N 138
GDP O3A PA sing N N 139
GDP PA O1A doub N N 140
GDP PA O2A sing N N 141
GDP PA "O5'" sing N N 142
GDP O2A HOA2 sing N N 143
GDP "O5'" "C5'" sing N N 144
GDP "C5'" "C4'" sing N N 145
GDP "C5'" "H5'" sing N N 146
GDP "C5'" "H5''" sing N N 147
GDP "C4'" "O4'" sing N N 148
GDP "C4'" "C3'" sing N N 149
GDP "C4'" "H4'" sing N N 150
GDP "O4'" "C1'" sing N N 151
GDP "C3'" "O3'" sing N N 152
GDP "C3'" "C2'" sing N N 153
GDP "C3'" "H3'" sing N N 154
GDP "O3'" "HO3'" sing N N 155
GDP "C2'" "O2'" sing N N 156
GDP "C2'" "C1'" sing N N 157
GDP "C2'" "H2'" sing N N 158
GDP "O2'" "HO2'" sing N N 159
GDP "C1'" N9 sing N N 160
GDP "C1'" "H1'" sing N N 161
GDP N9 C8 sing Y N 162
GDP N9 C4 sing Y N 163
GDP C8 N7 doub Y N 164
GDP C8 H8 sing N N 165
GDP N7 C5 sing Y N 166
GDP C5 C6 sing N N 167
GDP C5 C4 doub Y N 168
GDP C6 O6 doub N N 169
GDP C6 N1 sing N N 170
GDP N1 C2 sing N N 171
GDP N1 HN1 sing N N 172
GDP C2 N2 sing N N 173
GDP C2 N3 doub N N 174
GDP N2 HN21 sing N N 175
GDP N2 HN22 sing N N 176
GDP N3 C4 sing N N 177
GLN N CA sing N N 178
GLN N H sing N N 179
GLN N H2 sing N N 180
GLN CA C sing N N 181
GLN CA CB sing N N 182
GLN CA HA sing N N 183
GLN C O doub N N 184
GLN C OXT sing N N 185
GLN CB CG sing N N 186
GLN CB HB2 sing N N 187
GLN CB HB3 sing N N 188
GLN CG CD sing N N 189
GLN CG HG2 sing N N 190
GLN CG HG3 sing N N 191
GLN CD OE1 doub N N 192
GLN CD NE2 sing N N 193
GLN NE2 HE21 sing N N 194
GLN NE2 HE22 sing N N 195
GLN OXT HXT sing N N 196
GLU N CA sing N N 197
GLU N H sing N N 198
GLU N H2 sing N N 199
GLU CA C sing N N 200
GLU CA CB sing N N 201
GLU CA HA sing N N 202
GLU C O doub N N 203
GLU C OXT sing N N 204
GLU CB CG sing N N 205
GLU CB HB2 sing N N 206
GLU CB HB3 sing N N 207
GLU CG CD sing N N 208
GLU CG HG2 sing N N 209
GLU CG HG3 sing N N 210
GLU CD OE1 doub N N 211
GLU CD OE2 sing N N 212
GLU OE2 HE2 sing N N 213
GLU OXT HXT sing N N 214
GLY N CA sing N N 215
GLY N H sing N N 216
GLY N H2 sing N N 217
GLY CA C sing N N 218
GLY CA HA2 sing N N 219
GLY CA HA3 sing N N 220
GLY C O doub N N 221
GLY C OXT sing N N 222
GLY OXT HXT sing N N 223
HIS N CA sing N N 224
HIS N H sing N N 225
HIS N H2 sing N N 226
HIS CA C sing N N 227
HIS CA CB sing N N 228
HIS CA HA sing N N 229
HIS C O doub N N 230
HIS C OXT sing N N 231
HIS CB CG sing N N 232
HIS CB HB2 sing N N 233
HIS CB HB3 sing N N 234
HIS CG ND1 sing Y N 235
HIS CG CD2 doub Y N 236
HIS ND1 CE1 doub Y N 237
HIS ND1 HD1 sing N N 238
HIS CD2 NE2 sing Y N 239
HIS CD2 HD2 sing N N 240
HIS CE1 NE2 sing Y N 241
HIS CE1 HE1 sing N N 242
HIS NE2 HE2 sing N N 243
HIS OXT HXT sing N N 244
HOH O H1 sing N N 245
HOH O H2 sing N N 246
ILE N CA sing N N 247
ILE N H sing N N 248
ILE N H2 sing N N 249
ILE CA C sing N N 250
ILE CA CB sing N N 251
ILE CA HA sing N N 252
ILE C O doub N N 253
ILE C OXT sing N N 254
ILE CB CG1 sing N N 255
ILE CB CG2 sing N N 256
ILE CB HB sing N N 257
ILE CG1 CD1 sing N N 258
ILE CG1 HG12 sing N N 259
ILE CG1 HG13 sing N N 260
ILE CG2 HG21 sing N N 261
ILE CG2 HG22 sing N N 262
ILE CG2 HG23 sing N N 263
ILE CD1 HD11 sing N N 264
ILE CD1 HD12 sing N N 265
ILE CD1 HD13 sing N N 266
ILE OXT HXT sing N N 267
LEU N CA sing N N 268
LEU N H sing N N 269
LEU N H2 sing N N 270
LEU CA C sing N N 271
LEU CA CB sing N N 272
LEU CA HA sing N N 273
LEU C O doub N N 274
LEU C OXT sing N N 275
LEU CB CG sing N N 276
LEU CB HB2 sing N N 277
LEU CB HB3 sing N N 278
LEU CG CD1 sing N N 279
LEU CG CD2 sing N N 280
LEU CG HG sing N N 281
LEU CD1 HD11 sing N N 282
LEU CD1 HD12 sing N N 283
LEU CD1 HD13 sing N N 284
LEU CD2 HD21 sing N N 285
LEU CD2 HD22 sing N N 286
LEU CD2 HD23 sing N N 287
LEU OXT HXT sing N N 288
LYS N CA sing N N 289
LYS N H sing N N 290
LYS N H2 sing N N 291
LYS CA C sing N N 292
LYS CA CB sing N N 293
LYS CA HA sing N N 294
LYS C O doub N N 295
LYS C OXT sing N N 296
LYS CB CG sing N N 297
LYS CB HB2 sing N N 298
LYS CB HB3 sing N N 299
LYS CG CD sing N N 300
LYS CG HG2 sing N N 301
LYS CG HG3 sing N N 302
LYS CD CE sing N N 303
LYS CD HD2 sing N N 304
LYS CD HD3 sing N N 305
LYS CE NZ sing N N 306
LYS CE HE2 sing N N 307
LYS CE HE3 sing N N 308
LYS NZ HZ1 sing N N 309
LYS NZ HZ2 sing N N 310
LYS NZ HZ3 sing N N 311
LYS OXT HXT sing N N 312
MET N CA sing N N 313
MET N H sing N N 314
MET N H2 sing N N 315
MET CA C sing N N 316
MET CA CB sing N N 317
MET CA HA sing N N 318
MET C O doub N N 319
MET C OXT sing N N 320
MET CB CG sing N N 321
MET CB HB2 sing N N 322
MET CB HB3 sing N N 323
MET CG SD sing N N 324
MET CG HG2 sing N N 325
MET CG HG3 sing N N 326
MET SD CE sing N N 327
MET CE HE1 sing N N 328
MET CE HE2 sing N N 329
MET CE HE3 sing N N 330
MET OXT HXT sing N N 331
PHE N CA sing N N 332
PHE N H sing N N 333
PHE N H2 sing N N 334
PHE CA C sing N N 335
PHE CA CB sing N N 336
PHE CA HA sing N N 337
PHE C O doub N N 338
PHE C OXT sing N N 339
PHE CB CG sing N N 340
PHE CB HB2 sing N N 341
PHE CB HB3 sing N N 342
PHE CG CD1 doub Y N 343
PHE CG CD2 sing Y N 344
PHE CD1 CE1 sing Y N 345
PHE CD1 HD1 sing N N 346
PHE CD2 CE2 doub Y N 347
PHE CD2 HD2 sing N N 348
PHE CE1 CZ doub Y N 349
PHE CE1 HE1 sing N N 350
PHE CE2 CZ sing Y N 351
PHE CE2 HE2 sing N N 352
PHE CZ HZ sing N N 353
PHE OXT HXT sing N N 354
PRO N CA sing N N 355
PRO N CD sing N N 356
PRO N H sing N N 357
PRO CA C sing N N 358
PRO CA CB sing N N 359
PRO CA HA sing N N 360
PRO C O doub N N 361
PRO C OXT sing N N 362
PRO CB CG sing N N 363
PRO CB HB2 sing N N 364
PRO CB HB3 sing N N 365
PRO CG CD sing N N 366
PRO CG HG2 sing N N 367
PRO CG HG3 sing N N 368
PRO CD HD2 sing N N 369
PRO CD HD3 sing N N 370
PRO OXT HXT sing N N 371
SER N CA sing N N 372
SER N H sing N N 373
SER N H2 sing N N 374
SER CA C sing N N 375
SER CA CB sing N N 376
SER CA HA sing N N 377
SER C O doub N N 378
SER C OXT sing N N 379
SER CB OG sing N N 380
SER CB HB2 sing N N 381
SER CB HB3 sing N N 382
SER OG HG sing N N 383
SER OXT HXT sing N N 384
THR N CA sing N N 385
THR N H sing N N 386
THR N H2 sing N N 387
THR CA C sing N N 388
THR CA CB sing N N 389
THR CA HA sing N N 390
THR C O doub N N 391
THR C OXT sing N N 392
THR CB OG1 sing N N 393
THR CB CG2 sing N N 394
THR CB HB sing N N 395
THR OG1 HG1 sing N N 396
THR CG2 HG21 sing N N 397
THR CG2 HG22 sing N N 398
THR CG2 HG23 sing N N 399
THR OXT HXT sing N N 400
TYR N CA sing N N 401
TYR N H sing N N 402
TYR N H2 sing N N 403
TYR CA C sing N N 404
TYR CA CB sing N N 405
TYR CA HA sing N N 406
TYR C O doub N N 407
TYR C OXT sing N N 408
TYR CB CG sing N N 409
TYR CB HB2 sing N N 410
TYR CB HB3 sing N N 411
TYR CG CD1 doub Y N 412
TYR CG CD2 sing Y N 413
TYR CD1 CE1 sing Y N 414
TYR CD1 HD1 sing N N 415
TYR CD2 CE2 doub Y N 416
TYR CD2 HD2 sing N N 417
TYR CE1 CZ doub Y N 418
TYR CE1 HE1 sing N N 419
TYR CE2 CZ sing Y N 420
TYR CE2 HE2 sing N N 421
TYR CZ OH sing N N 422
TYR OH HH sing N N 423
TYR OXT HXT sing N N 424
VAL N CA sing N N 425
VAL N H sing N N 426
VAL N H2 sing N N 427
VAL CA C sing N N 428
VAL CA CB sing N N 429
VAL CA HA sing N N 430
VAL C O doub N N 431
VAL C OXT sing N N 432
VAL CB CG1 sing N N 433
VAL CB CG2 sing N N 434
VAL CB HB sing N N 435
VAL CG1 HG11 sing N N 436
VAL CG1 HG12 sing N N 437
VAL CG1 HG13 sing N N 438
VAL CG2 HG21 sing N N 439
VAL CG2 HG22 sing N N 440
VAL CG2 HG23 sing N N 441
VAL OXT HXT sing N N 442
#
_diffrn_measurement.method '\w scans'
_diffrn_measurement.details '1.00 degrees, 4.0 sec, detector distance 200.00 mm'
_diffrn_measurement.diffrn_id 1
#
_pdbx_initial_refinement_model.id 1
_pdbx_initial_refinement_model.entity_id_list ?
_pdbx_initial_refinement_model.type 'experimental model'
_pdbx_initial_refinement_model.source_name PDB
_pdbx_initial_refinement_model.accession_code 3GFT
_pdbx_initial_refinement_model.details 'PDB ENTRY 3GFT'
#
_atom_sites.entry_id 4LYJ
_atom_sites.fract_transf_matrix[1][1] 0.025790
_atom_sites.fract_transf_matrix[1][2] 0.000000
_atom_sites.fract_transf_matrix[1][3] 0.000000
_atom_sites.fract_transf_matrix[2][1] 0.000000
_atom_sites.fract_transf_matrix[2][2] 0.023151
_atom_sites.fract_transf_matrix[2][3] 0.000000
_atom_sites.fract_transf_matrix[3][1] 0.000000
_atom_sites.fract_transf_matrix[3][2] 0.000000
_atom_sites.fract_transf_matrix[3][3] 0.011424
_atom_sites.fract_transf_vector[1] 0.000000
_atom_sites.fract_transf_vector[2] 0.000000
_atom_sites.fract_transf_vector[3] 0.000000
#
loop_
_atom_type.symbol
C
CL
I
MG
N
O
P
S
#
loop_