HEADER SIGNALING PROTEIN/INHIBITOR 31-JUL-13 4LYJ
TITLE CRYSTAL STRUCTURE OF SMALL MOLECULE VINYLSULFONAMIDE 9 COVALENTLY
TITLE 2 BOUND TO K-RAS G12C, ALTERNATIVE SPACE GROUP
COMPND MOL_ID: 1;
COMPND 2 MOLECULE: GTPASE KRAS;
COMPND 3 CHAIN: A;
COMPND 4 FRAGMENT: UNP RESIDUES 1-169;
COMPND 5 SYNONYM: K-RAS 2, KI-RAS, C-K-RAS, C-KI-RAS, GTPASE KRAS, N-
COMPND 6 TERMINALLY PROCESSED;
COMPND 7 ENGINEERED: YES
SOURCE MOL_ID: 1;
SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS;
SOURCE 3 ORGANISM_COMMON: HUMAN;
SOURCE 4 ORGANISM_TAXID: 9606;
SOURCE 5 GENE: KRAS, KRAS ISOFORM 2B, KRAS2, RASK2;
SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI;
SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008;
SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3);
SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID;
SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PJEXPRESS411
KEYWDS GTPASE, GDP BOUND, SMALL MOLECULE INHIBITOR, COVALENT BINDER,
KEYWDS 2 SIGNALING PROTEIN-INHIBITOR COMPLEX
EXPDTA X-RAY DIFFRACTION
AUTHOR J.M.OSTREM,U.PETERS,M.L.SOS,J.A.WELLS,K.M.SHOKAT
REVDAT 6 20-NOV-24 4LYJ 1 REMARK
REVDAT 5 20-SEP-23 4LYJ 1 REMARK SEQADV LINK
REVDAT 4 14-MAR-18 4LYJ 1 SEQADV
REVDAT 3 15-NOV-17 4LYJ 1 REMARK
REVDAT 2 18-DEC-13 4LYJ 1 JRNL
REVDAT 1 27-NOV-13 4LYJ 0
JRNL AUTH J.M.OSTREM,U.PETERS,M.L.SOS,J.A.WELLS,K.M.SHOKAT
JRNL TITL K-RAS(G12C) INHIBITORS ALLOSTERICALLY CONTROL GTP AFFINITY
JRNL TITL 2 AND EFFECTOR INTERACTIONS.
JRNL REF NATURE V. 503 548 2013
JRNL REFN ISSN 0028-0836
JRNL PMID 24256730
JRNL DOI 10.1038/NATURE12796
REMARK 2
REMARK 2 RESOLUTION. 1.93 ANGSTROMS.
REMARK 3
REMARK 3 REFINEMENT.
REMARK 3 PROGRAM : PHENIX DEV_1402
REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN
REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE,
REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER,
REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY,
REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON,
REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI,
REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT
REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART
REMARK 3
REMARK 3 REFINEMENT TARGET : ML
REMARK 3
REMARK 3 DATA USED IN REFINEMENT.
REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.93
REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.18
REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350
REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4
REMARK 3 NUMBER OF REFLECTIONS : 11569
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT.
REMARK 3 R VALUE (WORKING + TEST SET) : 0.182
REMARK 3 R VALUE (WORKING SET) : 0.179
REMARK 3 FREE R VALUE : 0.207
REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.010
REMARK 3 FREE R VALUE TEST SET COUNT : 1158
REMARK 3
REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS).
REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE
REMARK 3 1 24.1809 - 3.8494 1.00 1399 157 0.1710 0.1708
REMARK 3 2 3.8494 - 3.0573 1.00 1329 147 0.1761 0.2190
REMARK 3 3 3.0573 - 2.6714 1.00 1322 147 0.1925 0.1959
REMARK 3 4 2.6714 - 2.4274 1.00 1281 142 0.1903 0.2216
REMARK 3 5 2.4274 - 2.2536 1.00 1301 145 0.1825 0.2386
REMARK 3 6 2.2536 - 2.1208 1.00 1286 143 0.1769 0.2381
REMARK 3 7 2.1208 - 2.0146 1.00 1268 141 0.1796 0.2446
REMARK 3 8 2.0146 - 1.9270 0.96 1225 136 0.1828 0.2356
REMARK 3
REMARK 3 BULK SOLVENT MODELLING.
REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL
REMARK 3 SOLVENT RADIUS : 1.11
REMARK 3 SHRINKAGE RADIUS : 0.90
REMARK 3 K_SOL : NULL
REMARK 3 B_SOL : NULL
REMARK 3
REMARK 3 ERROR ESTIMATES.
REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.190
REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.330
REMARK 3
REMARK 3 B VALUES.
REMARK 3 FROM WILSON PLOT (A**2) : NULL
REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.87
REMARK 3 OVERALL ANISOTROPIC B VALUE.
REMARK 3 B11 (A**2) : NULL
REMARK 3 B22 (A**2) : NULL
REMARK 3 B33 (A**2) : NULL
REMARK 3 B12 (A**2) : NULL
REMARK 3 B13 (A**2) : NULL
REMARK 3 B23 (A**2) : NULL
REMARK 3
REMARK 3 TWINNING INFORMATION.
REMARK 3 FRACTION: NULL
REMARK 3 OPERATOR: NULL
REMARK 3
REMARK 3 DEVIATIONS FROM IDEAL VALUES.
REMARK 3 RMSD COUNT
REMARK 3 BOND : 0.005 1394
REMARK 3 ANGLE : 0.959 1893
REMARK 3 CHIRALITY : 0.062 210
REMARK 3 PLANARITY : 0.003 238
REMARK 3 DIHEDRAL : 20.805 533
REMARK 3
REMARK 3 TLS DETAILS
REMARK 3 NUMBER OF TLS GROUPS : 7
REMARK 3 TLS GROUP : 1
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 25 )
REMARK 3 ORIGIN FOR THE GROUP (A): -12.3734 4.7295 7.4285
REMARK 3 T TENSOR
REMARK 3 T11: 0.1691 T22: 0.1329
REMARK 3 T33: 0.1500 T12: 0.0291
REMARK 3 T13: -0.0193 T23: 0.0143
REMARK 3 L TENSOR
REMARK 3 L11: 4.3524 L22: 2.1824
REMARK 3 L33: 2.8759 L12: 0.6860
REMARK 3 L13: 0.2227 L23: -0.3968
REMARK 3 S TENSOR
REMARK 3 S11: 0.0676 S12: 0.0154 S13: 0.2686
REMARK 3 S21: -0.1030 S22: 0.0087 S23: 0.3188
REMARK 3 S31: -0.2786 S32: -0.3814 S33: -0.0677
REMARK 3 TLS GROUP : 2
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 26 THROUGH 38 )
REMARK 3 ORIGIN FOR THE GROUP (A): -6.4448 12.2016 3.1923
REMARK 3 T TENSOR
REMARK 3 T11: 0.4627 T22: 0.2624
REMARK 3 T33: 0.3687 T12: -0.0121
REMARK 3 T13: 0.0101 T23: -0.0829
REMARK 3 L TENSOR
REMARK 3 L11: 1.3818 L22: 4.3664
REMARK 3 L33: 1.6984 L12: -1.2377
REMARK 3 L13: -1.4329 L23: 1.1596
REMARK 3 S TENSOR
REMARK 3 S11: 0.3401 S12: -0.1316 S13: 0.7990
REMARK 3 S21: -0.4512 S22: -0.1516 S23: -0.1282
REMARK 3 S31: -0.9346 S32: -0.1151 S33: -0.0543
REMARK 3 TLS GROUP : 3
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 39 THROUGH 74 )
REMARK 3 ORIGIN FOR THE GROUP (A): -16.1784 8.3813 12.0375
REMARK 3 T TENSOR
REMARK 3 T11: 0.1843 T22: 0.1930
REMARK 3 T33: 0.2228 T12: 0.0122
REMARK 3 T13: 0.0060 T23: -0.0352
REMARK 3 L TENSOR
REMARK 3 L11: 5.4808 L22: 2.4798
REMARK 3 L33: 8.1264 L12: 2.6228
REMARK 3 L13: 6.0889 L23: 2.6632
REMARK 3 S TENSOR
REMARK 3 S11: -0.2101 S12: 0.0702 S13: 0.4097
REMARK 3 S21: 0.0314 S22: -0.0008 S23: 0.2076
REMARK 3 S31: -0.2500 S32: 0.0436 S33: 0.2223
REMARK 3 TLS GROUP : 4
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 75 THROUGH 116 )
REMARK 3 ORIGIN FOR THE GROUP (A): -9.7321 -3.6623 17.8676
REMARK 3 T TENSOR
REMARK 3 T11: 0.1799 T22: 0.1585
REMARK 3 T33: 0.1255 T12: -0.0287
REMARK 3 T13: -0.0154 T23: 0.0283
REMARK 3 L TENSOR
REMARK 3 L11: 3.9712 L22: 3.0772
REMARK 3 L33: 2.9816 L12: -1.2180
REMARK 3 L13: -0.5684 L23: 1.5814
REMARK 3 S TENSOR
REMARK 3 S11: -0.0668 S12: -0.5434 S13: -0.1536
REMARK 3 S21: 0.3303 S22: -0.0383 S23: 0.1042
REMARK 3 S31: 0.2655 S32: -0.0029 S33: 0.0984
REMARK 3 TLS GROUP : 5
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 117 THROUGH 137 )
REMARK 3 ORIGIN FOR THE GROUP (A): -4.3564 -12.8924 9.4498
REMARK 3 T TENSOR
REMARK 3 T11: 0.2805 T22: 0.1850
REMARK 3 T33: 0.3006 T12: 0.0442
REMARK 3 T13: 0.0038 T23: 0.0257
REMARK 3 L TENSOR
REMARK 3 L11: 4.0681 L22: 2.9802
REMARK 3 L33: 3.4679 L12: 1.6173
REMARK 3 L13: -2.4485 L23: -1.5929
REMARK 3 S TENSOR
REMARK 3 S11: -0.2097 S12: -0.2015 S13: -0.9319
REMARK 3 S21: 0.1041 S22: -0.1542 S23: -0.3901
REMARK 3 S31: 0.5007 S32: 0.1662 S33: 0.2965
REMARK 3 TLS GROUP : 6
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 138 THROUGH 151 )
REMARK 3 ORIGIN FOR THE GROUP (A): -9.9369 -6.3500 2.9859
REMARK 3 T TENSOR
REMARK 3 T11: 0.2322 T22: 0.1620
REMARK 3 T33: 0.1900 T12: -0.0036
REMARK 3 T13: -0.0341 T23: -0.0319
REMARK 3 L TENSOR
REMARK 3 L11: 5.6526 L22: 7.7734
REMARK 3 L33: 5.8422 L12: 5.4062
REMARK 3 L13: -5.2603 L23: -6.2067
REMARK 3 S TENSOR
REMARK 3 S11: -0.2611 S12: 0.1796 S13: -0.1120
REMARK 3 S21: -0.6036 S22: -0.0362 S23: -0.1244
REMARK 3 S31: 0.5919 S32: -0.1494 S33: 0.2120
REMARK 3 TLS GROUP : 7
REMARK 3 SELECTION: CHAIN 'A' AND (RESID 152 THROUGH 167 )
REMARK 3 ORIGIN FOR THE GROUP (A): -21.9043 -3.4415 7.8489
REMARK 3 T TENSOR
REMARK 3 T11: 0.2591 T22: 0.2674
REMARK 3 T33: 0.2129 T12: -0.0655
REMARK 3 T13: -0.0656 T23: -0.0089
REMARK 3 L TENSOR
REMARK 3 L11: 1.9962 L22: 5.1823
REMARK 3 L33: 6.7300 L12: -1.0661
REMARK 3 L13: -2.6182 L23: 1.8057
REMARK 3 S TENSOR
REMARK 3 S11: 0.0846 S12: 0.2750 S13: -0.6615
REMARK 3 S21: 0.2428 S22: -0.3615 S23: 0.3569
REMARK 3 S31: 0.5546 S32: -0.6695 S33: 0.1455
REMARK 3
REMARK 3 NCS DETAILS
REMARK 3 NUMBER OF NCS GROUPS : NULL
REMARK 3
REMARK 3 OTHER REFINEMENT REMARKS: NULL
REMARK 4
REMARK 4 4LYJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11
REMARK 100
REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-AUG-13.
REMARK 100 THE DEPOSITION ID IS D_1000081246.
REMARK 200
REMARK 200 EXPERIMENTAL DETAILS
REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION
REMARK 200 DATE OF DATA COLLECTION : 14-NOV-12
REMARK 200 TEMPERATURE (KELVIN) : 100
REMARK 200 PH : 5.6
REMARK 200 NUMBER OF CRYSTALS USED : 1
REMARK 200
REMARK 200 SYNCHROTRON (Y/N) : Y
REMARK 200 RADIATION SOURCE : ALS
REMARK 200 BEAMLINE : 8.2.2
REMARK 200 X-RAY GENERATOR MODEL : NULL
REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M
REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000
REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL, SI(111)
REMARK 200 OPTICS : NULL
REMARK 200
REMARK 200 DETECTOR TYPE : CCD
REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R
REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000
REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000
REMARK 200
REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11573
REMARK 200 RESOLUTION RANGE HIGH (A) : 1.930
REMARK 200 RESOLUTION RANGE LOW (A) : 25.000
REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000
REMARK 200
REMARK 200 OVERALL.
REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0
REMARK 200 DATA REDUNDANCY : 7.000
REMARK 200 R MERGE (I) : 0.17000
REMARK 200 R SYM (I) : 0.17000
REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.2090
REMARK 200
REMARK 200 IN THE HIGHEST RESOLUTION SHELL.
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.93
REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.96
REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0
REMARK 200 DATA REDUNDANCY IN SHELL : 7.10
REMARK 200 R MERGE FOR SHELL (I) : 0.38200
REMARK 200 R SYM FOR SHELL (I) : 0.38200
REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.702
REMARK 200
REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH
REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT
REMARK 200 SOFTWARE USED: PHASER 2.5.2
REMARK 200 STARTING MODEL: PDB ENTRY 3GFT
REMARK 200
REMARK 200 REMARK: NULL
REMARK 280
REMARK 280 CRYSTAL
REMARK 280 SOLVENT CONTENT, VS (%): 35.06
REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.89
REMARK 280
REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG4000, 0.2M NH4CH3COO, 0.1M NA
REMARK 280 -CITRATE, PH 5.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY
REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21
REMARK 290
REMARK 290 SYMOP SYMMETRY
REMARK 290 NNNMMM OPERATOR
REMARK 290 1555 X,Y,Z
REMARK 290 2555 -X+1/2,-Y,Z+1/2
REMARK 290 3555 -X,Y+1/2,-Z+1/2
REMARK 290 4555 X+1/2,-Y+1/2,-Z
REMARK 290
REMARK 290 WHERE NNN -> OPERATOR NUMBER
REMARK 290 MMM -> TRANSLATION VECTOR
REMARK 290
REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS
REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM
REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY
REMARK 290 RELATED MOLECULES.
REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000
REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000
REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.38750
REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000
REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.76800
REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000
REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 21.59750
REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 43.76800
REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.38750
REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 21.59750
REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000
REMARK 290
REMARK 290 REMARK: NULL
REMARK 300
REMARK 300 BIOMOLECULE: 1
REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM
REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN
REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON
REMARK 300 BURIED SURFACE AREA.
REMARK 350
REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN
REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE
REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS
REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND
REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN.
REMARK 350
REMARK 350 BIOMOLECULE: 1
REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC
REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC
REMARK 350 SOFTWARE USED: PISA
REMARK 350 APPLY THE FOLLOWING TO CHAINS: A
REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000
REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000
REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000
REMARK 465
REMARK 465 MISSING RESIDUES
REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE
REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN
REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.)
REMARK 465
REMARK 465 M RES C SSSEQI
REMARK 465 GLY A 0
REMARK 465 MET A 1
REMARK 465 GLU A 168
REMARK 465 LYS A 169
REMARK 470
REMARK 470 MISSING ATOM
REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER;
REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER;
REMARK 470 I=INSERTION CODE):
REMARK 470 M RES CSSEQI ATOMS
REMARK 470 THR A 2 OG1 CG2
REMARK 470 GLU A 107 CG CD OE1 OE2
REMARK 470 ASP A 108 CG OD1 OD2
REMARK 470 LYS A 167 CG CD CE NZ
REMARK 500
REMARK 500 GEOMETRY AND STEREOCHEMISTRY
REMARK 500 SUBTOPIC: TORSION ANGLES
REMARK 500
REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS:
REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE).
REMARK 500
REMARK 500 STANDARD TABLE:
REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2)
REMARK 500
REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI-
REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400
REMARK 500
REMARK 500 M RES CSSEQI PSI PHI
REMARK 500 ASP A 108 85.86 58.57
REMARK 500
REMARK 500 REMARK: NULL
REMARK 620
REMARK 620 METAL COORDINATION
REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER;
REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE):
REMARK 620
REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL
REMARK 620 MG A 201 MG
REMARK 620 N RES CSSEQI ATOM
REMARK 620 1 SER A 17 OG
REMARK 620 2 TYR A 32 OH 90.8
REMARK 620 3 GDP A 203 O1B 95.9 91.6
REMARK 620 4 HOH A 312 O 92.7 163.7 103.8
REMARK 620 5 HOH A 360 O 143.0 82.1 120.4 85.6
REMARK 620 N 1 2 3 4
REMARK 800
REMARK 800 SITE
REMARK 800 SITE_IDENTIFIER: AC1
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 201
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC2
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 21F A 202
REMARK 800
REMARK 800 SITE_IDENTIFIER: AC3
REMARK 800 EVIDENCE_CODE: SOFTWARE
REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP A 203
REMARK 900
REMARK 900 RELATED ENTRIES
REMARK 900 RELATED ID: 4L8G RELATED DB: PDB
REMARK 900 RELATED MUTANT OF PROTEIN
REMARK 900 RELATED ID: 4LUC RELATED DB: PDB
REMARK 900 PROTEIN BOUND TO RELATED COMPOUND
REMARK 900 RELATED ID: 4LYF RELATED DB: PDB
REMARK 900 PROTEIN BOUND TO RELATED COMPOUND
REMARK 900 RELATED ID: 4L9W RELATED DB: PDB
REMARK 900 PROTEIN ISOFORM
REMARK 900 RELATED ID: 4L9S RELATED DB: PDB
REMARK 900 PROTEIN ISOFORM
REMARK 900 RELATED ID: 4LPK RELATED DB: PDB
REMARK 900 WILD-TYPE FORM OF PROTEIN
REMARK 900 RELATED ID: 4LV6 RELATED DB: PDB
REMARK 900 PROTEIN BOUND TO RELATED COMPOUND
REMARK 900 RELATED ID: 4LYH RELATED DB: PDB
REMARK 900 PROTEIN BOUND TO SAME COMPOUND, DIFFERENT SPACE GROUP
REMARK 900 RELATED ID: 4LRW RELATED DB: PDB
REMARK 900 PROTEIN WITHOUT INHIBITOR BOUND
REMARK 900 RELATED ID: 4M1O RELATED DB: PDB
REMARK 900 RELATED COMPOUND BOUND TO PROTEIN
REMARK 900 RELATED ID: 4M1S RELATED DB: PDB
REMARK 900 RELATED COMPOUND BOUND TO PROTEIN
REMARK 900 RELATED ID: 4M1T RELATED DB: PDB
REMARK 900 RELATED COMPOUND BOUND TO PROTEIN
REMARK 900 RELATED ID: 4M1W RELATED DB: PDB
REMARK 900 RELATED COMPOUND BOUND TO PROTEIN
REMARK 900 RELATED ID: 4M1Y RELATED DB: PDB
REMARK 900 RELATED COMPOUND BOUND TO PROTEIN
REMARK 900 RELATED ID: 4M21 RELATED DB: PDB
REMARK 900 RELATED COMPOUND BOUND TO PROTEIN
REMARK 900 RELATED ID: 4M22 RELATED DB: PDB
REMARK 900 RELATED COMPOUND BOUND TO PROTEIN
REMARK 999
REMARK 999 SEQUENCE
REMARK 999 THE SEQUENCE IN THE STRUCTURE REPRESENTS ISOFORM 2B OF GTPASE KRAS.
REMARK 999 THIS ISOFORM DIFFERS FROM THE CANONICAL SEQUENCE AS FOLLOW: 151-153
REMARK 999 (RVE TO GVD) AND 165-169 (QYRLK TO KHKEK)
DBREF 4LYJ A 1 169 UNP P01116 RASK_HUMAN 1 169
SEQADV 4LYJ GLY A 0 UNP P01116 EXPRESSION TAG
SEQADV 4LYJ CYS A 12 UNP P01116 GLY 12 VARIANT
SEQADV 4LYJ SER A 51 UNP P01116 CYS 51 ENGINEERED MUTATION
SEQADV 4LYJ LEU A 80 UNP P01116 CYS 80 ENGINEERED MUTATION
SEQADV 4LYJ SER A 118 UNP P01116 CYS 118 ENGINEERED MUTATION
SEQADV 4LYJ GLY A 151 UNP P01116 ARG 151 SEE REMARK 999
SEQADV 4LYJ ASP A 153 UNP P01116 GLU 153 SEE REMARK 999
SEQADV 4LYJ LYS A 165 UNP P01116 GLN 165 SEE REMARK 999
SEQADV 4LYJ HIS A 166 UNP P01116 TYR 166 SEE REMARK 999
SEQADV 4LYJ LYS A 167 UNP P01116 ARG 167 SEE REMARK 999
SEQADV 4LYJ GLU A 168 UNP P01116 LEU 168 SEE REMARK 999
SEQRES 1 A 170 GLY MET THR GLU TYR LYS LEU VAL VAL VAL GLY ALA CYS
SEQRES 2 A 170 GLY VAL GLY LYS SER ALA LEU THR ILE GLN LEU ILE GLN
SEQRES 3 A 170 ASN HIS PHE VAL ASP GLU TYR ASP PRO THR ILE GLU ASP
SEQRES 4 A 170 SER TYR ARG LYS GLN VAL VAL ILE ASP GLY GLU THR SER
SEQRES 5 A 170 LEU LEU ASP ILE LEU ASP THR ALA GLY GLN GLU GLU TYR
SEQRES 6 A 170 SER ALA MET ARG ASP GLN TYR MET ARG THR GLY GLU GLY
SEQRES 7 A 170 PHE LEU LEU VAL PHE ALA ILE ASN ASN THR LYS SER PHE
SEQRES 8 A 170 GLU ASP ILE HIS HIS TYR ARG GLU GLN ILE LYS ARG VAL
SEQRES 9 A 170 LYS ASP SER GLU ASP VAL PRO MET VAL LEU VAL GLY ASN
SEQRES 10 A 170 LYS SER ASP LEU PRO SER ARG THR VAL ASP THR LYS GLN
SEQRES 11 A 170 ALA GLN ASP LEU ALA ARG SER TYR GLY ILE PRO PHE ILE
SEQRES 12 A 170 GLU THR SER ALA LYS THR ARG GLN GLY VAL ASP ASP ALA
SEQRES 13 A 170 PHE TYR THR LEU VAL ARG GLU ILE ARG LYS HIS LYS GLU
SEQRES 14 A 170 LYS
HET MG A 201 1
HET 21F A 202 26
HET GDP A 203 28
HETNAM MG MAGNESIUM ION
HETNAM 21F N-{1-[N-(4-CHLORO-5-IODO-2-METHOXYPHENYL)
HETNAM 2 21F GLYCYL]PIPERIDIN-4-YL}ETHANESULFONAMIDE
HETNAM GDP GUANOSINE-5'-DIPHOSPHATE
FORMUL 2 MG MG 2+
FORMUL 3 21F C16 H23 CL I N3 O4 S
FORMUL 4 GDP C10 H15 N5 O11 P2
FORMUL 5 HOH *78(H2 O)
HELIX 1 1 GLY A 15 ASN A 26 1 12
HELIX 2 2 GLY A 60 GLU A 63 5 4
HELIX 3 3 TYR A 64 GLY A 75 1 12
HELIX 4 4 ASN A 86 ASP A 92 1 7
HELIX 5 5 ASP A 92 LYS A 104 1 13
HELIX 6 6 ASP A 126 GLY A 138 1 13
HELIX 7 7 GLY A 151 LYS A 165 1 15
SHEET 1 A 6 SER A 39 ILE A 46 0
SHEET 2 A 6 GLU A 49 LEU A 56 -1 O SER A 51 N VAL A 44
SHEET 3 A 6 GLU A 3 GLY A 10 1 N TYR A 4 O ASP A 54
SHEET 4 A 6 GLY A 77 ALA A 83 1 O VAL A 81 N VAL A 9
SHEET 5 A 6 MET A 111 ASN A 116 1 O ASN A 116 N PHE A 82
SHEET 6 A 6 PHE A 141 GLU A 143 1 O ILE A 142 N LEU A 113
LINK SG CYS A 12 C17 21F A 202 1555 1555 1.83
LINK OG SER A 17 MG MG A 201 1555 1555 2.26
LINK OH TYR A 32 MG MG A 201 1555 1555 2.20
LINK MG MG A 201 O1B GDP A 203 1555 1555 2.20
LINK MG MG A 201 O HOH A 312 1555 1555 2.35
LINK MG MG A 201 O HOH A 360 1555 1555 2.17
SITE 1 AC1 5 SER A 17 TYR A 32 GDP A 203 HOH A 312
SITE 2 AC1 5 HOH A 360
SITE 1 AC2 12 VAL A 9 GLY A 10 CYS A 12 THR A 58
SITE 2 AC2 12 GLU A 62 GLU A 63 ARG A 68 TYR A 71
SITE 3 AC2 12 MET A 72 TYR A 96 GLN A 99 HOH A 362
SITE 1 AC3 25 ALA A 11 GLY A 13 VAL A 14 GLY A 15
SITE 2 AC3 25 LYS A 16 SER A 17 ALA A 18 PHE A 28
SITE 3 AC3 25 VAL A 29 ASP A 30 TYR A 32 ASN A 116
SITE 4 AC3 25 LYS A 117 ASP A 119 LEU A 120 SER A 145
SITE 5 AC3 25 ALA A 146 LYS A 147 MG A 201 HOH A 307
SITE 6 AC3 25 HOH A 322 HOH A 330 HOH A 335 HOH A 350
SITE 7 AC3 25 HOH A 374
CRYST1 38.775 43.195 87.536 90.00 90.00 90.00 P 21 21 21 4
ORIGX1 1.000000 0.000000 0.000000 0.00000
ORIGX2 0.000000 1.000000 0.000000 0.00000
ORIGX3 0.000000 0.000000 1.000000 0.00000
SCALE1 0.025790 0.000000 0.000000 0.00000
SCALE2 0.000000 0.023151 0.000000 0.00000
SCALE3 0.000000 0.000000 0.011424 0.00000