data_4LZ1 # _entry.id 4LZ1 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4LZ1 NDB NA2611 RCSB RCSB081260 WWPDB D_1000081260 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 4DIH . unspecified PDB 4DII . unspecified PDB 3QLP . unspecified PDB 4LZ4 . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4LZ1 _pdbx_database_status.recvd_initial_deposition_date 2013-07-31 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Pica, A.' 1 'Russo Krauss, I.' 2 'Merlino, A.' 3 'Sica, F.' 4 # _citation.id primary _citation.title 'Dissecting the contribution of thrombin exosite I in the recognition of thrombin binding aptamer.' _citation.journal_abbrev 'Febs J.' _citation.journal_volume 280 _citation.page_first 6581 _citation.page_last 6588 _citation.year 2013 _citation.journal_id_ASTM ? _citation.country UK _citation.journal_id_ISSN 1742-464X _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24128303 _citation.pdbx_database_id_DOI 10.1111/febs.12561 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Pica, A.' 1 ? primary 'Russo Krauss, I.' 2 ? primary 'Merlino, A.' 3 ? primary 'Nagatoishi, S.' 4 ? primary 'Sugimoto, N.' 5 ? primary 'Sica, F.' 6 ? # _cell.entry_id 4LZ1 _cell.length_a 42.892 _cell.length_b 44.484 _cell.length_c 52.643 _cell.angle_alpha 65.24 _cell.angle_beta 82.53 _cell.angle_gamma 63.72 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4LZ1 _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'Thrombin light chain' 4096.534 1 3.4.21.5 ? ? ? 2 polymer nat 'Thrombin heavy chain' 29780.219 1 3.4.21.5 ? ? ? 3 polymer syn 'Thrombin Binding Aptamer' 4618.955 1 ? ? ? ? 4 non-polymer syn 'D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide' 453.986 1 ? ? ? ? 5 non-polymer syn 'POTASSIUM ION' 39.098 1 ? ? ? ? 6 non-polymer man 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 1 ? ? ? ? 7 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 8 water nat water 18.015 229 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'Coagulation factor II, Activation peptide fragment 1, Activation peptide fragment 2, Thrombin light chain' 2 'Coagulation factor II, Activation peptide fragment 1, Activation peptide fragment 2, Thrombin heavy chain' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR L ? 2 'polypeptide(L)' no no ;IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY THVFRLKKWIQKVIDQFGE ; ;IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY THVFRLKKWIQKVIDQFGE ; H ? 3 polydeoxyribonucleotide no yes '(DG)(DG)(DT)(DT)(DG)(DG)(DT)(DG)(DT)(DG)(DG)(3DR)(DT)(DG)(DG)' GGTTGGTGTGGNTGG D ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 THR n 1 2 PHE n 1 3 GLY n 1 4 SER n 1 5 GLY n 1 6 GLU n 1 7 ALA n 1 8 ASP n 1 9 CYS n 1 10 GLY n 1 11 LEU n 1 12 ARG n 1 13 PRO n 1 14 LEU n 1 15 PHE n 1 16 GLU n 1 17 LYS n 1 18 LYS n 1 19 SER n 1 20 LEU n 1 21 GLU n 1 22 ASP n 1 23 LYS n 1 24 THR n 1 25 GLU n 1 26 ARG n 1 27 GLU n 1 28 LEU n 1 29 LEU n 1 30 GLU n 1 31 SER n 1 32 TYR n 1 33 ILE n 1 34 ASP n 1 35 GLY n 1 36 ARG n 2 1 ILE n 2 2 VAL n 2 3 GLU n 2 4 GLY n 2 5 SER n 2 6 ASP n 2 7 ALA n 2 8 GLU n 2 9 ILE n 2 10 GLY n 2 11 MET n 2 12 SER n 2 13 PRO n 2 14 TRP n 2 15 GLN n 2 16 VAL n 2 17 MET n 2 18 LEU n 2 19 PHE n 2 20 ARG n 2 21 LYS n 2 22 SER n 2 23 PRO n 2 24 GLN n 2 25 GLU n 2 26 LEU n 2 27 LEU n 2 28 CYS n 2 29 GLY n 2 30 ALA n 2 31 SER n 2 32 LEU n 2 33 ILE n 2 34 SER n 2 35 ASP n 2 36 ARG n 2 37 TRP n 2 38 VAL n 2 39 LEU n 2 40 THR n 2 41 ALA n 2 42 ALA n 2 43 HIS n 2 44 CYS n 2 45 LEU n 2 46 LEU n 2 47 TYR n 2 48 PRO n 2 49 PRO n 2 50 TRP n 2 51 ASP n 2 52 LYS n 2 53 ASN n 2 54 PHE n 2 55 THR n 2 56 GLU n 2 57 ASN n 2 58 ASP n 2 59 LEU n 2 60 LEU n 2 61 VAL n 2 62 ARG n 2 63 ILE n 2 64 GLY n 2 65 LYS n 2 66 HIS n 2 67 SER n 2 68 ARG n 2 69 THR n 2 70 ARG n 2 71 TYR n 2 72 GLU n 2 73 ARG n 2 74 ASN n 2 75 ILE n 2 76 GLU n 2 77 LYS n 2 78 ILE n 2 79 SER n 2 80 MET n 2 81 LEU n 2 82 GLU n 2 83 LYS n 2 84 ILE n 2 85 TYR n 2 86 ILE n 2 87 HIS n 2 88 PRO n 2 89 ARG n 2 90 TYR n 2 91 ASN n 2 92 TRP n 2 93 ARG n 2 94 GLU n 2 95 ASN n 2 96 LEU n 2 97 ASP n 2 98 ARG n 2 99 ASP n 2 100 ILE n 2 101 ALA n 2 102 LEU n 2 103 MET n 2 104 LYS n 2 105 LEU n 2 106 LYS n 2 107 LYS n 2 108 PRO n 2 109 VAL n 2 110 ALA n 2 111 PHE n 2 112 SER n 2 113 ASP n 2 114 TYR n 2 115 ILE n 2 116 HIS n 2 117 PRO n 2 118 VAL n 2 119 CYS n 2 120 LEU n 2 121 PRO n 2 122 ASP n 2 123 ARG n 2 124 GLU n 2 125 THR n 2 126 ALA n 2 127 ALA n 2 128 SER n 2 129 LEU n 2 130 LEU n 2 131 GLN n 2 132 ALA n 2 133 GLY n 2 134 TYR n 2 135 LYS n 2 136 GLY n 2 137 ARG n 2 138 VAL n 2 139 THR n 2 140 GLY n 2 141 TRP n 2 142 GLY n 2 143 ASN n 2 144 LEU n 2 145 LYS n 2 146 GLU n 2 147 THR n 2 148 TRP n 2 149 THR n 2 150 ALA n 2 151 ASN n 2 152 VAL n 2 153 GLY n 2 154 LYS n 2 155 GLY n 2 156 GLN n 2 157 PRO n 2 158 SER n 2 159 VAL n 2 160 LEU n 2 161 GLN n 2 162 VAL n 2 163 VAL n 2 164 ASN n 2 165 LEU n 2 166 PRO n 2 167 ILE n 2 168 VAL n 2 169 GLU n 2 170 ARG n 2 171 PRO n 2 172 VAL n 2 173 CYS n 2 174 LYS n 2 175 ASP n 2 176 SER n 2 177 THR n 2 178 ARG n 2 179 ILE n 2 180 ARG n 2 181 ILE n 2 182 THR n 2 183 ASP n 2 184 ASN n 2 185 MET n 2 186 PHE n 2 187 CYS n 2 188 ALA n 2 189 GLY n 2 190 TYR n 2 191 LYS n 2 192 PRO n 2 193 ASP n 2 194 GLU n 2 195 GLY n 2 196 LYS n 2 197 ARG n 2 198 GLY n 2 199 ASP n 2 200 ALA n 2 201 CYS n 2 202 GLU n 2 203 GLY n 2 204 ASP n 2 205 SER n 2 206 GLY n 2 207 GLY n 2 208 PRO n 2 209 PHE n 2 210 VAL n 2 211 MET n 2 212 LYS n 2 213 SER n 2 214 PRO n 2 215 PHE n 2 216 ASN n 2 217 ASN n 2 218 ARG n 2 219 TRP n 2 220 TYR n 2 221 GLN n 2 222 MET n 2 223 GLY n 2 224 ILE n 2 225 VAL n 2 226 SER n 2 227 TRP n 2 228 GLY n 2 229 GLU n 2 230 GLY n 2 231 CYS n 2 232 ASP n 2 233 ARG n 2 234 ASP n 2 235 GLY n 2 236 LYS n 2 237 TYR n 2 238 GLY n 2 239 PHE n 2 240 TYR n 2 241 THR n 2 242 HIS n 2 243 VAL n 2 244 PHE n 2 245 ARG n 2 246 LEU n 2 247 LYS n 2 248 LYS n 2 249 TRP n 2 250 ILE n 2 251 GLN n 2 252 LYS n 2 253 VAL n 2 254 ILE n 2 255 ASP n 2 256 GLN n 2 257 PHE n 2 258 GLY n 2 259 GLU n 3 1 DG n 3 2 DG n 3 3 DT n 3 4 DT n 3 5 DG n 3 6 DG n 3 7 DT n 3 8 DG n 3 9 DT n 3 10 DG n 3 11 DG n 3 12 3DR n 3 13 DT n 3 14 DG n 3 15 DG n # loop_ _entity_src_nat.entity_id _entity_src_nat.pdbx_src_id _entity_src_nat.pdbx_alt_source_flag _entity_src_nat.pdbx_beg_seq_num _entity_src_nat.pdbx_end_seq_num _entity_src_nat.common_name _entity_src_nat.pdbx_organism_scientific _entity_src_nat.pdbx_ncbi_taxonomy_id _entity_src_nat.genus _entity_src_nat.species _entity_src_nat.strain _entity_src_nat.tissue _entity_src_nat.tissue_fraction _entity_src_nat.pdbx_secretion _entity_src_nat.pdbx_fragment _entity_src_nat.pdbx_variant _entity_src_nat.pdbx_cell_line _entity_src_nat.pdbx_atcc _entity_src_nat.pdbx_cellular_location _entity_src_nat.pdbx_organ _entity_src_nat.pdbx_organelle _entity_src_nat.pdbx_cell _entity_src_nat.pdbx_plasmid_name _entity_src_nat.pdbx_plasmid_details _entity_src_nat.details 1 1 sample ? ? human 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? 2 1 sample ? ? human 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _pdbx_entity_src_syn.entity_id 3 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'Deletion mutant of the Thrombin Binding Aptamer (TBA)' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP THRB_HUMAN P00734 1 TFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR 328 ? 2 UNP THRB_HUMAN P00734 2 ;IVEGSDAEIGMSPWQVMLFRKSPQELLCGASLISDRWVLTAAHCLLYPPWDKNFTENDLLVRIGKHSRTRYERNIEKISM LEKIYIHPRYNWRENLDRDIALMKLKKPVAFSDYIHPVCLPDRETAASLLQAGYKGRVTGWGNLKETWTANVGKGQPSVL QVVNLPIVERPVCKDSTRIRITDNMFCAGYKPDEGKRGDACEGDSGGPFVMKSPFNNRWYQMGIVSWGEGCDRDGKYGFY THVFRLKKWIQKVIDQFGE ; 364 ? 3 PDB 4LZ1 4LZ1 3 GGTTGGTGTGGXTGG ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4LZ1 L 1 ? 36 ? P00734 328 ? 363 ? -5 16 2 2 4LZ1 H 1 ? 259 ? P00734 364 ? 622 ? 16 247 3 3 4LZ1 D 1 ? 15 ? 4LZ1 1 ? 15 ? 1 15 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 0G6 peptide-like . 'D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide' PPACK 'C21 H34 Cl N6 O3 1' 453.986 3DR 'DNA linking' . "1',2'-DIDEOXYRIBOFURANOSE-5'-PHOSPHATE" 'ABASIC DIDEOXYRIBOSE' 'C5 H11 O6 P' 198.111 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 K non-polymer . 'POTASSIUM ION' ? 'K 1' 39.098 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ? 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4LZ1 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.12 _exptl_crystal.density_percent_sol 41.97 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 5.8 _exptl_crystal_grow.pdbx_details 'PEG 3350 25%, 0.2 M ammonium acetate, 0.1 M Bis/Tris, pH 5.8, VAPOR DIFFUSION, SITTING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'DECTRIS PILATUS 2M' _diffrn_detector.pdbx_collection_date 2012-07-26 _diffrn_detector.details mirrors # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator GRAPHITE _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.0099 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ELETTRA BEAMLINE 5.2R' _diffrn_source.pdbx_synchrotron_site ELETTRA _diffrn_source.pdbx_synchrotron_beamline 5.2R _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.0099 # _reflns.entry_id 4LZ1 _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 30.0 _reflns.d_resolution_high 1.65 _reflns.number_obs 36813 _reflns.number_all ? _reflns.percent_possible_obs 96.7 _reflns.pdbx_Rmerge_I_obs 0.053 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.65 _reflns_shell.d_res_low 1.68 _reflns_shell.percent_possible_all 93.9 _reflns_shell.Rmerge_I_obs 0.480 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4LZ1 _refine.ls_number_reflns_obs 34943 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F . _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 25.20 _refine.ls_d_res_high 1.65 _refine.ls_percent_reflns_obs 96.08 _refine.ls_R_factor_obs 0.15698 _refine.ls_R_factor_all 0.15698 _refine.ls_R_factor_R_work 0.15520 _refine.ls_R_factor_R_free 0.19011 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 1820 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.975 _refine.correlation_coeff_Fo_to_Fc_free 0.964 _refine.B_iso_mean 27.122 _refine.aniso_B[1][1] -0.47 _refine.aniso_B[2][2] -0.72 _refine.aniso_B[3][3] 1.37 _refine.aniso_B[1][2] 0.58 _refine.aniso_B[1][3] 0.68 _refine.aniso_B[2][3] 0.42 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.092 _refine.pdbx_overall_ESU_R_Free 0.093 _refine.overall_SU_ML 0.064 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 1.897 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2251 _refine_hist.pdbx_number_atoms_nucleic_acid 306 _refine_hist.pdbx_number_atoms_ligand 46 _refine_hist.number_atoms_solvent 229 _refine_hist.number_atoms_total 2832 _refine_hist.d_res_high 1.65 _refine_hist.d_res_low 25.20 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 0.022 0.018 ? 2751 ? 'X-RAY DIFFRACTION' r_bond_other_d 0.002 0.020 ? 2468 ? 'X-RAY DIFFRACTION' r_angle_refined_deg 2.155 1.869 ? 3799 ? 'X-RAY DIFFRACTION' r_angle_other_deg 1.054 3.003 ? 5698 ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 6.939 5.000 ? 289 ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 33.988 23.333 ? 114 ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 13.689 15.000 ? 432 ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 12.996 15.000 ? 21 ? 'X-RAY DIFFRACTION' r_chiral_restr 0.140 0.200 ? 388 ? 'X-RAY DIFFRACTION' r_gen_planes_refined 0.013 0.021 ? 2850 ? 'X-RAY DIFFRACTION' r_gen_planes_other 0.002 0.020 ? 622 ? 'X-RAY DIFFRACTION' r_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcbond_it 2.303 2.128 ? 1124 ? 'X-RAY DIFFRACTION' r_mcbond_other 2.303 2.128 ? 1125 ? 'X-RAY DIFFRACTION' r_mcangle_it 3.171 3.181 ? 1402 ? 'X-RAY DIFFRACTION' r_mcangle_other 3.170 3.181 ? 1403 ? 'X-RAY DIFFRACTION' r_scbond_it 3.862 3.090 ? 1627 ? 'X-RAY DIFFRACTION' r_scbond_other 3.862 3.090 ? 1626 ? 'X-RAY DIFFRACTION' r_scangle_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_scangle_other 5.753 4.544 ? 2390 ? 'X-RAY DIFFRACTION' r_long_range_B_refined 7.796 23.466 ? 3457 ? 'X-RAY DIFFRACTION' r_long_range_B_other 7.718 23.270 ? 3373 ? 'X-RAY DIFFRACTION' r_rigid_bond_restr ? ? ? ? ? 'X-RAY DIFFRACTION' r_sphericity_free ? ? ? ? ? 'X-RAY DIFFRACTION' r_sphericity_bonded ? ? ? ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.646 _refine_ls_shell.d_res_low 1.689 _refine_ls_shell.number_reflns_R_work 2265 _refine_ls_shell.R_factor_R_work 0.218 _refine_ls_shell.percent_reflns_obs 86.83 _refine_ls_shell.R_factor_R_free 0.242 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 141 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4LZ1 _struct.title 'X-ray structure of the complex between human thrombin and the TBA deletion mutant lacking thymine 12 nucleobase' _struct.pdbx_descriptor 'Thrombin light chain (E.C.3.4.21.5), Thrombin heavy chain (E.C.3.4.21.5)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4LZ1 _struct_keywords.pdbx_keywords 'HYDROLASE/HYDROLASE INHIBITOR/DNA' _struct_keywords.text ;PROTEIN-DNA COMPLEX, BLOOD COAGULATION, APTAMER, INHIBITOR-DNA COMPLEX, DNA APTAMER, G-QUADRUPLEX, Serine protease, Hydrolase, abasic furan, DNA thymine nucleobase deletion, blood, HYDROLASE-DNA complex, HYDROLASE-HYDROLASE INHIBITOR-DNA complex ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 6 ? G N N 7 ? H N N 8 ? I N N 8 ? J N N 8 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PHE A 15 ? SER A 19 ? PHE L 7 SER L 11 5 ? 5 HELX_P HELX_P2 2 THR A 24 B ASP A 34 L THR L 14 ASP L 14 1 ? 11 HELX_P HELX_P3 3 ALA B 41 ? CYS B 44 ? ALA H 55 CYS H 58 5 ? 4 HELX_P HELX_P4 4 PRO B 48 B ASP B 51 E PRO H 60 ASP H 60 5 ? 4 HELX_P HELX_P5 5 THR B 55 I ASN B 57 ? THR H 60 ASN H 62 5 ? 3 HELX_P HELX_P6 6 ASP B 122 ? LEU B 130 ? ASP H 125 LEU H 130 1 ? 9 HELX_P HELX_P7 7 GLU B 169 ? SER B 176 ? GLU H 164 SER H 171 1 ? 8 HELX_P HELX_P8 8 LEU B 246 ? PHE B 257 ? LEU H 234 PHE H 245 1 ? 12 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 9 SG ? ? ? 1_555 B CYS 119 SG ? ? L CYS 1 H CYS 122 1_555 ? ? ? ? ? ? ? 2.090 ? ? disulf2 disulf ? ? B CYS 28 SG ? ? ? 1_555 B CYS 44 SG ? ? H CYS 42 H CYS 58 1_555 ? ? ? ? ? ? ? 1.988 ? ? disulf3 disulf ? ? B CYS 173 SG ? ? ? 1_555 B CYS 187 SG ? ? H CYS 168 H CYS 182 1_555 ? ? ? ? ? ? ? 1.962 ? ? disulf4 disulf ? ? B CYS 201 SG ? ? ? 1_555 B CYS 231 SG ? ? H CYS 191 H CYS 220 1_555 ? ? ? ? ? ? ? 2.116 ? ? covale1 covale one ? D 0G6 . C3 ? ? ? 1_555 B HIS 43 NE2 ? ? L 0G6 301 H HIS 57 1_555 ? ? ? ? ? ? ? 1.444 ? ? covale2 covale none ? D 0G6 . C2 ? ? ? 1_555 B SER 205 OG ? ? L 0G6 301 H SER 195 1_555 ? ? ? ? ? ? ? 1.409 ? ? covale3 covale one ? B ASN 53 ND2 ? G ? 1_555 F NAG . C1 ? ? H ASN 60 H NAG 301 1_555 ? ? ? ? ? ? ? 1.469 ? N-Glycosylation covale4 covale both ? C DG 11 "O3'" ? ? ? 1_555 C 3DR 12 P ? ? D DG 11 D 3DR 12 1_555 ? ? ? ? ? ? ? 1.567 ? ? covale5 covale both ? C 3DR 12 "O3'" ? ? ? 1_555 C DT 13 P ? ? D 3DR 12 D DT 13 1_555 ? ? ? ? ? ? ? 1.571 ? ? metalc1 metalc ? ? B ARG 233 O ? ? ? 1_555 G NA . NA ? ? H ARG 221 H NA 302 1_555 ? ? ? ? ? ? ? 2.333 ? ? metalc2 metalc ? ? B LYS 236 O ? ? ? 1_555 G NA . NA ? ? H LYS 224 H NA 302 1_555 ? ? ? ? ? ? ? 2.245 ? ? metalc3 metalc ? ? G NA . NA ? ? ? 1_555 I HOH . O ? ? H NA 302 H HOH 431 1_555 ? ? ? ? ? ? ? 2.204 ? ? metalc4 metalc ? ? G NA . NA ? ? ? 1_555 I HOH . O ? ? H NA 302 H HOH 432 1_555 ? ? ? ? ? ? ? 2.417 ? ? metalc5 metalc ? ? G NA . NA ? ? ? 1_555 I HOH . O ? ? H NA 302 H HOH 434 1_555 ? ? ? ? ? ? ? 2.832 ? ? metalc6 metalc ? ? G NA . NA ? ? ? 1_555 I HOH . O ? ? H NA 302 H HOH 449 1_555 ? ? ? ? ? ? ? 2.321 ? ? metalc7 metalc ? ? E K . K ? ? ? 1_555 C DG 1 O6 ? ? H K 303 D DG 1 1_555 ? ? ? ? ? ? ? 2.756 ? ? metalc8 metalc ? ? E K . K ? ? ? 1_555 C DG 2 O6 ? ? H K 303 D DG 2 1_555 ? ? ? ? ? ? ? 2.861 ? ? metalc9 metalc ? ? E K . K ? ? ? 1_555 C DG 5 O6 ? ? H K 303 D DG 5 1_555 ? ? ? ? ? ? ? 2.624 ? ? metalc10 metalc ? ? E K . K ? ? ? 1_555 C DG 6 O6 ? ? H K 303 D DG 6 1_555 ? ? ? ? ? ? ? 2.787 ? ? metalc11 metalc ? ? E K . K ? ? ? 1_555 C DG 10 O6 ? ? H K 303 D DG 10 1_555 ? ? ? ? ? ? ? 2.771 ? ? metalc12 metalc ? ? E K . K ? ? ? 1_555 C DG 11 O6 ? ? H K 303 D DG 11 1_555 ? ? ? ? ? ? ? 2.737 ? ? metalc13 metalc ? ? E K . K ? ? ? 1_555 C DG 14 O6 ? ? H K 303 D DG 14 1_555 ? ? ? ? ? ? ? 2.746 ? ? metalc14 metalc ? ? E K . K ? ? ? 1_555 C DG 15 O6 ? ? H K 303 D DG 15 1_555 ? ? ? ? ? ? ? 2.812 ? ? hydrog1 hydrog ? ? C DG 1 N1 ? ? ? 1_555 C DG 6 O6 ? ? D DG 1 D DG 6 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog2 hydrog ? ? C DG 1 N2 ? ? ? 1_555 C DG 6 N7 ? ? D DG 1 D DG 6 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog3 hydrog ? ? C DG 1 N7 ? ? ? 1_555 C DG 15 N2 ? ? D DG 1 D DG 15 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog4 hydrog ? ? C DG 1 O6 ? ? ? 1_555 C DG 15 N1 ? ? D DG 1 D DG 15 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog5 hydrog ? ? C DG 2 N7 ? ? ? 1_555 C DG 5 N2 ? ? D DG 2 D DG 5 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog6 hydrog ? ? C DG 2 O6 ? ? ? 1_555 C DG 5 N1 ? ? D DG 2 D DG 5 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog7 hydrog ? ? C DG 2 N1 ? ? ? 1_555 C DG 14 O6 ? ? D DG 2 D DG 14 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog8 hydrog ? ? C DG 2 N2 ? ? ? 1_555 C DG 14 N7 ? ? D DG 2 D DG 14 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog9 hydrog ? ? C DG 5 N7 ? ? ? 1_555 C DG 11 N2 ? ? D DG 5 D DG 11 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog10 hydrog ? ? C DG 5 O6 ? ? ? 1_555 C DG 11 N1 ? ? D DG 5 D DG 11 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog11 hydrog ? ? C DG 6 N1 ? ? ? 1_555 C DG 10 O6 ? ? D DG 6 D DG 10 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog12 hydrog ? ? C DG 6 N2 ? ? ? 1_555 C DG 10 N7 ? ? D DG 6 D DG 10 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog13 hydrog ? ? C DG 10 N1 ? ? ? 1_555 C DG 15 O6 ? ? D DG 10 D DG 15 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog14 hydrog ? ? C DG 10 N2 ? ? ? 1_555 C DG 15 N7 ? ? D DG 10 D DG 15 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog15 hydrog ? ? C DG 11 N7 ? ? ? 1_555 C DG 14 N2 ? ? D DG 11 D DG 14 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog16 hydrog ? ? C DG 11 O6 ? ? ? 1_555 C DG 14 N1 ? ? D DG 11 D DG 14 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog17 hydrog ? ? C DT 13 O2 ? ? ? 1_555 C DG 14 N1 ? ? D DT 13 D DG 14 1_555 ? ? ? ? ? ? 'DT-DG MISPAIR' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? metalc ? ? hydrog ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id SER _struct_mon_prot_cis.label_seq_id 22 _struct_mon_prot_cis.label_asym_id B _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code A _struct_mon_prot_cis.auth_comp_id SER _struct_mon_prot_cis.auth_seq_id 36 _struct_mon_prot_cis.auth_asym_id H _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 23 _struct_mon_prot_cis.pdbx_label_asym_id_2 B _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 37 _struct_mon_prot_cis.pdbx_auth_asym_id_2 H _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -5.27 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 8 ? B ? 7 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel A 7 8 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel B 6 7 ? anti-parallel C 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 SER B 5 ? ASP B 6 ? SER H 20 ASP H 21 A 2 GLN B 161 ? VAL B 168 ? GLN H 156 VAL H 163 A 3 MET B 185 ? ALA B 188 ? MET H 180 ALA H 183 A 4 GLY B 238 ? HIS B 242 ? GLY H 226 HIS H 230 A 5 TRP B 219 ? TRP B 227 ? TRP H 207 TRP H 215 A 6 PRO B 208 ? LYS B 212 ? PRO H 198 LYS H 202 A 7 LYS B 135 ? GLY B 140 ? LYS H 135 GLY H 140 A 8 GLN B 161 ? VAL B 168 ? GLN H 156 VAL H 163 B 1 GLN B 15 ? ARG B 20 ? GLN H 30 ARG H 35 B 2 GLU B 25 ? LEU B 32 ? GLU H 39 LEU H 46 B 3 TRP B 37 ? THR B 40 ? TRP H 51 THR H 54 B 4 ALA B 101 ? LEU B 105 ? ALA H 104 LEU H 108 B 5 LYS B 77 ? ILE B 86 ? LYS H 81 ILE H 90 B 6 LEU B 59 ? ILE B 63 ? LEU H 64 ILE H 68 B 7 GLN B 15 ? ARG B 20 ? GLN H 30 ARG H 35 C 1 LEU B 46 ? TYR B 47 A LEU H 60 TYR H 60 C 2 LYS B 52 F ASN B 53 G LYS H 60 ASN H 60 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N SER B 5 ? N SER H 20 O VAL B 162 ? O VAL H 157 A 2 3 N VAL B 168 ? N VAL H 163 O CYS B 187 ? O CYS H 182 A 3 4 N PHE B 186 ? N PHE H 181 O TYR B 240 ? O TYR H 228 A 4 5 O PHE B 239 ? O PHE H 227 N TRP B 227 ? N TRP H 215 A 5 6 O TYR B 220 ? O TYR H 208 N MET B 211 ? N MET H 201 A 6 7 O VAL B 210 ? O VAL H 200 N ARG B 137 ? N ARG H 137 A 7 8 N VAL B 138 ? N VAL H 138 O VAL B 163 ? O VAL H 158 B 1 2 N LEU B 18 ? N LEU H 33 O LEU B 27 ? O LEU H 41 B 2 3 N SER B 31 ? N SER H 45 O LEU B 39 ? O LEU H 53 B 3 4 N VAL B 38 ? N VAL H 52 O MET B 103 ? O MET H 106 B 4 5 O LEU B 102 ? O LEU H 105 N TYR B 85 ? N TYR H 89 B 5 6 O LYS B 77 ? O LYS H 81 N ILE B 63 ? N ILE H 68 B 6 7 O LEU B 60 ? O LEU H 65 N PHE B 19 ? N PHE H 34 C 1 2 N TYR B 47 A N TYR H 60 O LYS B 52 F O LYS H 60 # _database_PDB_matrix.entry_id 4LZ1 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4LZ1 _atom_sites.fract_transf_matrix[1][1] 0.023314 _atom_sites.fract_transf_matrix[1][2] -0.011515 _atom_sites.fract_transf_matrix[1][3] 0.001773 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.025072 _atom_sites.fract_transf_matrix[2][3] -0.011148 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.020967 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C K N NA O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 THR 1 -5 ? ? ? L . n A 1 2 PHE 2 -4 ? ? ? L . n A 1 3 GLY 3 -3 ? ? ? L . n A 1 4 SER 4 -2 ? ? ? L . n A 1 5 GLY 5 -1 ? ? ? L . n A 1 6 GLU 6 0 ? ? ? L . n A 1 7 ALA 7 1 1 ALA ALA L B n A 1 8 ASP 8 1 1 ASP ASP L A n A 1 9 CYS 9 1 1 CYS CYS L . n A 1 10 GLY 10 2 2 GLY GLY L . n A 1 11 LEU 11 3 3 LEU LEU L . n A 1 12 ARG 12 4 4 ARG ARG L . n A 1 13 PRO 13 5 5 PRO PRO L . n A 1 14 LEU 14 6 6 LEU LEU L . n A 1 15 PHE 15 7 7 PHE PHE L . n A 1 16 GLU 16 8 8 GLU GLU L . n A 1 17 LYS 17 9 9 LYS LYS L . n A 1 18 LYS 18 10 10 LYS LYS L . n A 1 19 SER 19 11 11 SER SER L . n A 1 20 LEU 20 12 12 LEU LEU L . n A 1 21 GLU 21 13 13 GLU GLU L . n A 1 22 ASP 22 14 14 ASP ASP L . n A 1 23 LYS 23 14 14 LYS LYS L A n A 1 24 THR 24 14 14 THR THR L B n A 1 25 GLU 25 14 14 GLU GLU L C n A 1 26 ARG 26 14 14 ARG ARG L D n A 1 27 GLU 27 14 14 GLU GLU L E n A 1 28 LEU 28 14 14 LEU LEU L F n A 1 29 LEU 29 14 14 LEU LEU L G n A 1 30 GLU 30 14 14 GLU GLU L H n A 1 31 SER 31 14 14 SER SER L I n A 1 32 TYR 32 14 14 TYR TYR L J n A 1 33 ILE 33 14 14 ILE ILE L K n A 1 34 ASP 34 14 14 ASP ASP L L n A 1 35 GLY 35 15 ? ? ? L . n A 1 36 ARG 36 16 ? ? ? L . n B 2 1 ILE 1 16 16 ILE ILE H . n B 2 2 VAL 2 17 17 VAL VAL H . n B 2 3 GLU 3 18 18 GLU GLU H . n B 2 4 GLY 4 19 19 GLY GLY H . n B 2 5 SER 5 20 20 SER SER H . n B 2 6 ASP 6 21 21 ASP ASP H . n B 2 7 ALA 7 22 22 ALA ALA H . n B 2 8 GLU 8 23 23 GLU GLU H . n B 2 9 ILE 9 24 24 ILE ILE H . n B 2 10 GLY 10 25 25 GLY GLY H . n B 2 11 MET 11 26 26 MET MET H . n B 2 12 SER 12 27 27 SER SER H . n B 2 13 PRO 13 28 28 PRO PRO H . n B 2 14 TRP 14 29 29 TRP TRP H . n B 2 15 GLN 15 30 30 GLN GLN H . n B 2 16 VAL 16 31 31 VAL VAL H . n B 2 17 MET 17 32 32 MET MET H . n B 2 18 LEU 18 33 33 LEU LEU H . n B 2 19 PHE 19 34 34 PHE PHE H . n B 2 20 ARG 20 35 35 ARG ARG H . n B 2 21 LYS 21 36 36 LYS LYS H . n B 2 22 SER 22 36 36 SER SER H A n B 2 23 PRO 23 37 37 PRO PRO H . n B 2 24 GLN 24 38 38 GLN GLN H . n B 2 25 GLU 25 39 39 GLU GLU H . n B 2 26 LEU 26 40 40 LEU LEU H . n B 2 27 LEU 27 41 41 LEU LEU H . n B 2 28 CYS 28 42 42 CYS CYS H . n B 2 29 GLY 29 43 43 GLY GLY H . n B 2 30 ALA 30 44 44 ALA ALA H . n B 2 31 SER 31 45 45 SER SER H . n B 2 32 LEU 32 46 46 LEU LEU H . n B 2 33 ILE 33 47 47 ILE ILE H . n B 2 34 SER 34 48 48 SER SER H . n B 2 35 ASP 35 49 49 ASP ASP H . n B 2 36 ARG 36 50 50 ARG ARG H . n B 2 37 TRP 37 51 51 TRP TRP H . n B 2 38 VAL 38 52 52 VAL VAL H . n B 2 39 LEU 39 53 53 LEU LEU H . n B 2 40 THR 40 54 54 THR THR H . n B 2 41 ALA 41 55 55 ALA ALA H . n B 2 42 ALA 42 56 56 ALA ALA H . n B 2 43 HIS 43 57 57 HIS HIS H . n B 2 44 CYS 44 58 58 CYS CYS H . n B 2 45 LEU 45 59 59 LEU LEU H . n B 2 46 LEU 46 60 60 LEU LEU H . n B 2 47 TYR 47 60 60 TYR TYR H A n B 2 48 PRO 48 60 60 PRO PRO H B n B 2 49 PRO 49 60 60 PRO PRO H C n B 2 50 TRP 50 60 60 TRP TRP H D n B 2 51 ASP 51 60 60 ASP ASP H E n B 2 52 LYS 52 60 60 LYS LYS H F n B 2 53 ASN 53 60 60 ASN ASN H G n B 2 54 PHE 54 60 60 PHE PHE H H n B 2 55 THR 55 60 60 THR THR H I n B 2 56 GLU 56 61 61 GLU GLU H . n B 2 57 ASN 57 62 62 ASN ASN H . n B 2 58 ASP 58 63 63 ASP ASP H . n B 2 59 LEU 59 64 64 LEU LEU H . n B 2 60 LEU 60 65 65 LEU LEU H . n B 2 61 VAL 61 66 66 VAL VAL H . n B 2 62 ARG 62 67 67 ARG ARG H . n B 2 63 ILE 63 68 68 ILE ILE H . n B 2 64 GLY 64 69 69 GLY GLY H . n B 2 65 LYS 65 70 70 LYS LYS H . n B 2 66 HIS 66 71 71 HIS HIS H . n B 2 67 SER 67 72 72 SER SER H . n B 2 68 ARG 68 73 73 ARG ARG H . n B 2 69 THR 69 74 74 THR THR H . n B 2 70 ARG 70 75 75 ARG ARG H . n B 2 71 TYR 71 76 76 TYR TYR H . n B 2 72 GLU 72 77 77 GLU GLU H . n B 2 73 ARG 73 77 77 ARG ARG H A n B 2 74 ASN 74 78 78 ASN ASN H . n B 2 75 ILE 75 79 79 ILE ILE H . n B 2 76 GLU 76 80 80 GLU GLU H . n B 2 77 LYS 77 81 81 LYS LYS H . n B 2 78 ILE 78 82 82 ILE ILE H . n B 2 79 SER 79 83 83 SER SER H . n B 2 80 MET 80 84 84 MET MET H . n B 2 81 LEU 81 85 85 LEU LEU H . n B 2 82 GLU 82 86 86 GLU GLU H . n B 2 83 LYS 83 87 87 LYS LYS H . n B 2 84 ILE 84 88 88 ILE ILE H . n B 2 85 TYR 85 89 89 TYR TYR H . n B 2 86 ILE 86 90 90 ILE ILE H . n B 2 87 HIS 87 91 91 HIS HIS H . n B 2 88 PRO 88 92 92 PRO PRO H . n B 2 89 ARG 89 93 93 ARG ARG H . n B 2 90 TYR 90 94 94 TYR TYR H . n B 2 91 ASN 91 95 95 ASN ASN H . n B 2 92 TRP 92 96 96 TRP TRP H . n B 2 93 ARG 93 97 97 ARG ARG H . n B 2 94 GLU 94 97 97 GLU GLU H A n B 2 95 ASN 95 98 98 ASN ASN H . n B 2 96 LEU 96 99 99 LEU LEU H . n B 2 97 ASP 97 100 100 ASP ASP H . n B 2 98 ARG 98 101 101 ARG ARG H . n B 2 99 ASP 99 102 102 ASP ASP H . n B 2 100 ILE 100 103 103 ILE ILE H . n B 2 101 ALA 101 104 104 ALA ALA H . n B 2 102 LEU 102 105 105 LEU LEU H . n B 2 103 MET 103 106 106 MET MET H . n B 2 104 LYS 104 107 107 LYS LYS H . n B 2 105 LEU 105 108 108 LEU LEU H . n B 2 106 LYS 106 109 109 LYS LYS H . n B 2 107 LYS 107 110 110 LYS LYS H . n B 2 108 PRO 108 111 111 PRO PRO H . n B 2 109 VAL 109 112 112 VAL VAL H . n B 2 110 ALA 110 113 113 ALA ALA H . n B 2 111 PHE 111 114 114 PHE PHE H . n B 2 112 SER 112 115 115 SER SER H . n B 2 113 ASP 113 116 116 ASP ASP H . n B 2 114 TYR 114 117 117 TYR TYR H . n B 2 115 ILE 115 118 118 ILE ILE H . n B 2 116 HIS 116 119 119 HIS HIS H . n B 2 117 PRO 117 120 120 PRO PRO H . n B 2 118 VAL 118 121 121 VAL VAL H . n B 2 119 CYS 119 122 122 CYS CYS H . n B 2 120 LEU 120 123 123 LEU LEU H . n B 2 121 PRO 121 124 124 PRO PRO H . n B 2 122 ASP 122 125 125 ASP ASP H . n B 2 123 ARG 123 126 126 ARG ARG H . n B 2 124 GLU 124 127 127 GLU GLU H . n B 2 125 THR 125 128 128 THR THR H . n B 2 126 ALA 126 129 129 ALA ALA H . n B 2 127 ALA 127 129 129 ALA ALA H A n B 2 128 SER 128 129 129 SER SER H B n B 2 129 LEU 129 129 129 LEU LEU H C n B 2 130 LEU 130 130 130 LEU LEU H . n B 2 131 GLN 131 131 131 GLN GLN H . n B 2 132 ALA 132 132 132 ALA ALA H . n B 2 133 GLY 133 133 133 GLY GLY H . n B 2 134 TYR 134 134 134 TYR TYR H . n B 2 135 LYS 135 135 135 LYS LYS H . n B 2 136 GLY 136 136 136 GLY GLY H . n B 2 137 ARG 137 137 137 ARG ARG H . n B 2 138 VAL 138 138 138 VAL VAL H . n B 2 139 THR 139 139 139 THR THR H . n B 2 140 GLY 140 140 140 GLY GLY H . n B 2 141 TRP 141 141 141 TRP TRP H . n B 2 142 GLY 142 142 142 GLY GLY H . n B 2 143 ASN 143 143 143 ASN ASN H . n B 2 144 LEU 144 144 144 LEU LEU H . n B 2 145 LYS 145 145 145 LYS LYS H . n B 2 146 GLU 146 146 146 GLU GLU H . n B 2 147 THR 147 147 147 THR THR H . n B 2 148 TRP 148 147 ? ? ? H A n B 2 149 THR 149 147 ? ? ? H B n B 2 150 ALA 150 147 ? ? ? H C n B 2 151 ASN 151 147 ? ? ? H D n B 2 152 VAL 152 147 ? ? ? H E n B 2 153 GLY 153 147 ? ? ? H F n B 2 154 LYS 154 147 ? ? ? H G n B 2 155 GLY 155 147 ? ? ? H H n B 2 156 GLN 156 151 151 GLN GLN H . n B 2 157 PRO 157 152 152 PRO PRO H . n B 2 158 SER 158 153 153 SER SER H . n B 2 159 VAL 159 154 154 VAL VAL H . n B 2 160 LEU 160 155 155 LEU LEU H . n B 2 161 GLN 161 156 156 GLN GLN H . n B 2 162 VAL 162 157 157 VAL VAL H . n B 2 163 VAL 163 158 158 VAL VAL H . n B 2 164 ASN 164 159 159 ASN ASN H . n B 2 165 LEU 165 160 160 LEU LEU H . n B 2 166 PRO 166 161 161 PRO PRO H . n B 2 167 ILE 167 162 162 ILE ILE H . n B 2 168 VAL 168 163 163 VAL VAL H . n B 2 169 GLU 169 164 164 GLU GLU H . n B 2 170 ARG 170 165 165 ARG ARG H . n B 2 171 PRO 171 166 166 PRO PRO H . n B 2 172 VAL 172 167 167 VAL VAL H . n B 2 173 CYS 173 168 168 CYS CYS H . n B 2 174 LYS 174 169 169 LYS LYS H . n B 2 175 ASP 175 170 170 ASP ASP H . n B 2 176 SER 176 171 171 SER SER H . n B 2 177 THR 177 172 172 THR THR H . n B 2 178 ARG 178 173 173 ARG ARG H . n B 2 179 ILE 179 174 174 ILE ILE H . n B 2 180 ARG 180 175 175 ARG ARG H . n B 2 181 ILE 181 176 176 ILE ILE H . n B 2 182 THR 182 177 177 THR THR H . n B 2 183 ASP 183 178 178 ASP ASP H . n B 2 184 ASN 184 179 179 ASN ASN H . n B 2 185 MET 185 180 180 MET MET H . n B 2 186 PHE 186 181 181 PHE PHE H . n B 2 187 CYS 187 182 182 CYS CYS H . n B 2 188 ALA 188 183 183 ALA ALA H . n B 2 189 GLY 189 184 184 GLY GLY H . n B 2 190 TYR 190 184 184 TYR TYR H A n B 2 191 LYS 191 185 185 LYS LYS H . n B 2 192 PRO 192 186 186 PRO PRO H . n B 2 193 ASP 193 186 186 ASP ASP H A n B 2 194 GLU 194 186 186 GLU GLU H B n B 2 195 GLY 195 186 186 GLY GLY H C n B 2 196 LYS 196 186 186 LYS LYS H D n B 2 197 ARG 197 187 187 ARG ARG H . n B 2 198 GLY 198 188 188 GLY GLY H . n B 2 199 ASP 199 189 189 ASP ASP H . n B 2 200 ALA 200 190 190 ALA ALA H . n B 2 201 CYS 201 191 191 CYS CYS H . n B 2 202 GLU 202 192 192 GLU GLU H . n B 2 203 GLY 203 193 193 GLY GLY H . n B 2 204 ASP 204 194 194 ASP ASP H . n B 2 205 SER 205 195 195 SER SER H . n B 2 206 GLY 206 196 196 GLY GLY H . n B 2 207 GLY 207 197 197 GLY GLY H . n B 2 208 PRO 208 198 198 PRO PRO H . n B 2 209 PHE 209 199 199 PHE PHE H . n B 2 210 VAL 210 200 200 VAL VAL H . n B 2 211 MET 211 201 201 MET MET H . n B 2 212 LYS 212 202 202 LYS LYS H . n B 2 213 SER 213 203 203 SER SER H . n B 2 214 PRO 214 204 204 PRO PRO H . n B 2 215 PHE 215 204 204 PHE PHE H A n B 2 216 ASN 216 204 204 ASN ASN H B n B 2 217 ASN 217 205 205 ASN ASN H . n B 2 218 ARG 218 206 206 ARG ARG H . n B 2 219 TRP 219 207 207 TRP TRP H . n B 2 220 TYR 220 208 208 TYR TYR H . n B 2 221 GLN 221 209 209 GLN GLN H . n B 2 222 MET 222 210 210 MET MET H . n B 2 223 GLY 223 211 211 GLY GLY H . n B 2 224 ILE 224 212 212 ILE ILE H . n B 2 225 VAL 225 213 213 VAL VAL H . n B 2 226 SER 226 214 214 SER SER H . n B 2 227 TRP 227 215 215 TRP TRP H . n B 2 228 GLY 228 216 216 GLY GLY H . n B 2 229 GLU 229 217 217 GLU GLU H . n B 2 230 GLY 230 219 219 GLY GLY H . n B 2 231 CYS 231 220 220 CYS CYS H . n B 2 232 ASP 232 221 221 ASP ASP H A n B 2 233 ARG 233 221 221 ARG ARG H . n B 2 234 ASP 234 222 222 ASP ASP H . n B 2 235 GLY 235 223 223 GLY GLY H . n B 2 236 LYS 236 224 224 LYS LYS H . n B 2 237 TYR 237 225 225 TYR TYR H . n B 2 238 GLY 238 226 226 GLY GLY H . n B 2 239 PHE 239 227 227 PHE PHE H . n B 2 240 TYR 240 228 228 TYR TYR H . n B 2 241 THR 241 229 229 THR THR H . n B 2 242 HIS 242 230 230 HIS HIS H . n B 2 243 VAL 243 231 231 VAL VAL H . n B 2 244 PHE 244 232 232 PHE PHE H . n B 2 245 ARG 245 233 233 ARG ARG H . n B 2 246 LEU 246 234 234 LEU LEU H . n B 2 247 LYS 247 235 235 LYS LYS H . n B 2 248 LYS 248 236 236 LYS LYS H . n B 2 249 TRP 249 237 237 TRP TRP H . n B 2 250 ILE 250 238 238 ILE ILE H . n B 2 251 GLN 251 239 239 GLN GLN H . n B 2 252 LYS 252 240 240 LYS LYS H . n B 2 253 VAL 253 241 241 VAL VAL H . n B 2 254 ILE 254 242 242 ILE ILE H . n B 2 255 ASP 255 243 243 ASP ASP H . n B 2 256 GLN 256 244 244 GLN GLN H . n B 2 257 PHE 257 245 245 PHE PHE H . n B 2 258 GLY 258 246 ? ? ? H . n B 2 259 GLU 259 247 ? ? ? H . n C 3 1 DG 1 1 1 DG DG D . n C 3 2 DG 2 2 2 DG DG D . n C 3 3 DT 3 3 3 DT DT D . n C 3 4 DT 4 4 4 DT DT D . n C 3 5 DG 5 5 5 DG DG D . n C 3 6 DG 6 6 6 DG DG D . n C 3 7 DT 7 7 7 DT DT D . n C 3 8 DG 8 8 8 DG DG D . n C 3 9 DT 9 9 9 DT DT D . n C 3 10 DG 10 10 10 DG DG D . n C 3 11 DG 11 11 11 DG DG D . n C 3 12 3DR 12 12 12 3DR PMF D . n C 3 13 DT 13 13 13 DT DT D . n C 3 14 DG 14 14 14 DG DG D . n C 3 15 DG 15 15 15 DG DG D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 0G6 1 301 301 0G6 0G6 L . E 5 K 1 303 2 K K H . F 6 NAG 1 301 302 NAG NAG H . G 7 NA 1 302 1 NA NA H . H 8 HOH 1 401 58 HOH HOH L . H 8 HOH 2 402 80 HOH HOH L . H 8 HOH 3 403 81 HOH HOH L . H 8 HOH 4 404 82 HOH HOH L . H 8 HOH 5 405 83 HOH HOH L . H 8 HOH 6 406 85 HOH HOH L . H 8 HOH 7 407 86 HOH HOH L . H 8 HOH 8 408 92 HOH HOH L . H 8 HOH 9 409 111 HOH HOH L . H 8 HOH 10 410 118 HOH HOH L . H 8 HOH 11 411 145 HOH HOH L . H 8 HOH 12 412 171 HOH HOH L . H 8 HOH 13 413 179 HOH HOH L . H 8 HOH 14 414 192 HOH HOH L . H 8 HOH 15 415 218 HOH HOH L . H 8 HOH 16 416 226 HOH HOH L . I 8 HOH 1 401 1 HOH HOH H . I 8 HOH 2 402 2 HOH HOH H . I 8 HOH 3 403 5 HOH HOH H . I 8 HOH 4 404 10 HOH HOH H . I 8 HOH 5 405 20 HOH HOH H . I 8 HOH 6 406 21 HOH HOH H . I 8 HOH 7 407 22 HOH HOH H . I 8 HOH 8 408 23 HOH HOH H . I 8 HOH 9 409 24 HOH HOH H . I 8 HOH 10 410 25 HOH HOH H . I 8 HOH 11 411 26 HOH HOH H . I 8 HOH 12 412 27 HOH HOH H . I 8 HOH 13 413 28 HOH HOH H . I 8 HOH 14 414 29 HOH HOH H . I 8 HOH 15 415 30 HOH HOH H . I 8 HOH 16 416 31 HOH HOH H . I 8 HOH 17 417 32 HOH HOH H . I 8 HOH 18 418 33 HOH HOH H . I 8 HOH 19 419 34 HOH HOH H . I 8 HOH 20 420 35 HOH HOH H . I 8 HOH 21 421 36 HOH HOH H . I 8 HOH 22 422 37 HOH HOH H . I 8 HOH 23 423 38 HOH HOH H . I 8 HOH 24 424 39 HOH HOH H . I 8 HOH 25 425 40 HOH HOH H . I 8 HOH 26 426 41 HOH HOH H . I 8 HOH 27 427 42 HOH HOH H . I 8 HOH 28 428 43 HOH HOH H . I 8 HOH 29 429 44 HOH HOH H . I 8 HOH 30 430 45 HOH HOH H . I 8 HOH 31 431 46 HOH HOH H . I 8 HOH 32 432 47 HOH HOH H . I 8 HOH 33 433 48 HOH HOH H . I 8 HOH 34 434 49 HOH HOH H . I 8 HOH 35 435 50 HOH HOH H . I 8 HOH 36 436 51 HOH HOH H . I 8 HOH 37 437 52 HOH HOH H . I 8 HOH 38 438 53 HOH HOH H . I 8 HOH 39 439 54 HOH HOH H . I 8 HOH 40 440 55 HOH HOH H . I 8 HOH 41 441 56 HOH HOH H . I 8 HOH 42 442 57 HOH HOH H . I 8 HOH 43 443 59 HOH HOH H . I 8 HOH 44 444 60 HOH HOH H . I 8 HOH 45 445 61 HOH HOH H . I 8 HOH 46 446 62 HOH HOH H . I 8 HOH 47 447 63 HOH HOH H . I 8 HOH 48 448 64 HOH HOH H . I 8 HOH 49 449 65 HOH HOH H . I 8 HOH 50 450 66 HOH HOH H . I 8 HOH 51 451 67 HOH HOH H . I 8 HOH 52 452 68 HOH HOH H . I 8 HOH 53 453 69 HOH HOH H . I 8 HOH 54 454 70 HOH HOH H . I 8 HOH 55 455 71 HOH HOH H . I 8 HOH 56 456 72 HOH HOH H . I 8 HOH 57 457 73 HOH HOH H . I 8 HOH 58 458 74 HOH HOH H . I 8 HOH 59 459 75 HOH HOH H . I 8 HOH 60 460 76 HOH HOH H . I 8 HOH 61 461 77 HOH HOH H . I 8 HOH 62 462 78 HOH HOH H . I 8 HOH 63 463 79 HOH HOH H . I 8 HOH 64 464 84 HOH HOH H . I 8 HOH 65 465 87 HOH HOH H . I 8 HOH 66 466 88 HOH HOH H . I 8 HOH 67 467 89 HOH HOH H . I 8 HOH 68 468 90 HOH HOH H . I 8 HOH 69 469 91 HOH HOH H . I 8 HOH 70 470 93 HOH HOH H . I 8 HOH 71 471 94 HOH HOH H . I 8 HOH 72 472 95 HOH HOH H . I 8 HOH 73 473 96 HOH HOH H . I 8 HOH 74 474 97 HOH HOH H . I 8 HOH 75 475 98 HOH HOH H . I 8 HOH 76 476 99 HOH HOH H . I 8 HOH 77 477 100 HOH HOH H . I 8 HOH 78 478 101 HOH HOH H . I 8 HOH 79 479 102 HOH HOH H . I 8 HOH 80 480 103 HOH HOH H . I 8 HOH 81 481 104 HOH HOH H . I 8 HOH 82 482 105 HOH HOH H . I 8 HOH 83 483 106 HOH HOH H . I 8 HOH 84 484 107 HOH HOH H . I 8 HOH 85 485 108 HOH HOH H . I 8 HOH 86 486 109 HOH HOH H . I 8 HOH 87 487 110 HOH HOH H . I 8 HOH 88 488 112 HOH HOH H . I 8 HOH 89 489 113 HOH HOH H . I 8 HOH 90 490 114 HOH HOH H . I 8 HOH 91 491 115 HOH HOH H . I 8 HOH 92 492 116 HOH HOH H . I 8 HOH 93 493 117 HOH HOH H . I 8 HOH 94 494 119 HOH HOH H . I 8 HOH 95 495 120 HOH HOH H . I 8 HOH 96 496 121 HOH HOH H . I 8 HOH 97 497 122 HOH HOH H . I 8 HOH 98 498 123 HOH HOH H . I 8 HOH 99 499 124 HOH HOH H . I 8 HOH 100 500 125 HOH HOH H . I 8 HOH 101 501 126 HOH HOH H . I 8 HOH 102 502 127 HOH HOH H . I 8 HOH 103 503 128 HOH HOH H . I 8 HOH 104 504 129 HOH HOH H . I 8 HOH 105 505 130 HOH HOH H . I 8 HOH 106 506 131 HOH HOH H . I 8 HOH 107 507 132 HOH HOH H . I 8 HOH 108 508 133 HOH HOH H . I 8 HOH 109 509 134 HOH HOH H . I 8 HOH 110 510 136 HOH HOH H . I 8 HOH 111 511 137 HOH HOH H . I 8 HOH 112 512 138 HOH HOH H . I 8 HOH 113 513 140 HOH HOH H . I 8 HOH 114 514 141 HOH HOH H . I 8 HOH 115 515 142 HOH HOH H . I 8 HOH 116 516 143 HOH HOH H . I 8 HOH 117 517 144 HOH HOH H . I 8 HOH 118 518 146 HOH HOH H . I 8 HOH 119 519 147 HOH HOH H . I 8 HOH 120 520 148 HOH HOH H . I 8 HOH 121 521 149 HOH HOH H . I 8 HOH 122 522 151 HOH HOH H . I 8 HOH 123 523 152 HOH HOH H . I 8 HOH 124 524 153 HOH HOH H . I 8 HOH 125 525 154 HOH HOH H . I 8 HOH 126 526 155 HOH HOH H . I 8 HOH 127 527 156 HOH HOH H . I 8 HOH 128 528 157 HOH HOH H . I 8 HOH 129 529 158 HOH HOH H . I 8 HOH 130 530 159 HOH HOH H . I 8 HOH 131 531 160 HOH HOH H . I 8 HOH 132 532 161 HOH HOH H . I 8 HOH 133 533 162 HOH HOH H . I 8 HOH 134 534 163 HOH HOH H . I 8 HOH 135 535 165 HOH HOH H . I 8 HOH 136 536 166 HOH HOH H . I 8 HOH 137 537 167 HOH HOH H . I 8 HOH 138 538 168 HOH HOH H . I 8 HOH 139 539 169 HOH HOH H . I 8 HOH 140 540 170 HOH HOH H . I 8 HOH 141 541 172 HOH HOH H . I 8 HOH 142 542 173 HOH HOH H . I 8 HOH 143 543 174 HOH HOH H . I 8 HOH 144 544 175 HOH HOH H . I 8 HOH 145 545 176 HOH HOH H . I 8 HOH 146 546 177 HOH HOH H . I 8 HOH 147 547 178 HOH HOH H . I 8 HOH 148 548 180 HOH HOH H . I 8 HOH 149 549 181 HOH HOH H . I 8 HOH 150 550 182 HOH HOH H . I 8 HOH 151 551 183 HOH HOH H . I 8 HOH 152 552 184 HOH HOH H . I 8 HOH 153 553 185 HOH HOH H . I 8 HOH 154 554 186 HOH HOH H . I 8 HOH 155 555 187 HOH HOH H . I 8 HOH 156 556 188 HOH HOH H . I 8 HOH 157 557 189 HOH HOH H . I 8 HOH 158 558 190 HOH HOH H . I 8 HOH 159 559 191 HOH HOH H . I 8 HOH 160 560 193 HOH HOH H . I 8 HOH 161 561 195 HOH HOH H . I 8 HOH 162 562 197 HOH HOH H . I 8 HOH 163 563 198 HOH HOH H . I 8 HOH 164 564 199 HOH HOH H . I 8 HOH 165 565 200 HOH HOH H . I 8 HOH 166 566 201 HOH HOH H . I 8 HOH 167 567 202 HOH HOH H . I 8 HOH 168 568 203 HOH HOH H . I 8 HOH 169 569 204 HOH HOH H . I 8 HOH 170 570 205 HOH HOH H . I 8 HOH 171 571 206 HOH HOH H . I 8 HOH 172 572 207 HOH HOH H . I 8 HOH 173 573 208 HOH HOH H . I 8 HOH 174 574 209 HOH HOH H . I 8 HOH 175 575 210 HOH HOH H . I 8 HOH 176 576 211 HOH HOH H . I 8 HOH 177 577 212 HOH HOH H . I 8 HOH 178 578 213 HOH HOH H . I 8 HOH 179 579 214 HOH HOH H . I 8 HOH 180 580 215 HOH HOH H . I 8 HOH 181 581 216 HOH HOH H . I 8 HOH 182 582 219 HOH HOH H . I 8 HOH 183 583 220 HOH HOH H . I 8 HOH 184 584 221 HOH HOH H . I 8 HOH 185 585 222 HOH HOH H . I 8 HOH 186 586 223 HOH HOH H . I 8 HOH 187 587 224 HOH HOH H . I 8 HOH 188 588 225 HOH HOH H . I 8 HOH 189 589 227 HOH HOH H . I 8 HOH 190 590 228 HOH HOH H . I 8 HOH 191 591 229 HOH HOH H . J 8 HOH 1 201 3 HOH HOH D . J 8 HOH 2 202 4 HOH HOH D . J 8 HOH 3 203 6 HOH HOH D . J 8 HOH 4 204 7 HOH HOH D . J 8 HOH 5 205 8 HOH HOH D . J 8 HOH 6 206 9 HOH HOH D . J 8 HOH 7 207 11 HOH HOH D . J 8 HOH 8 208 12 HOH HOH D . J 8 HOH 9 209 13 HOH HOH D . J 8 HOH 10 210 14 HOH HOH D . J 8 HOH 11 211 15 HOH HOH D . J 8 HOH 12 212 16 HOH HOH D . J 8 HOH 13 213 17 HOH HOH D . J 8 HOH 14 214 18 HOH HOH D . J 8 HOH 15 215 19 HOH HOH D . J 8 HOH 16 216 135 HOH HOH D . J 8 HOH 17 217 139 HOH HOH D . J 8 HOH 18 218 150 HOH HOH D . J 8 HOH 19 219 164 HOH HOH D . J 8 HOH 20 220 194 HOH HOH D . J 8 HOH 21 221 196 HOH HOH D . J 8 HOH 22 222 217 HOH HOH D . # _pdbx_molecule_features.prd_id PRD_000020 _pdbx_molecule_features.name D-Phe-Pro-Arg-CH2Cl _pdbx_molecule_features.type Peptide-like _pdbx_molecule_features.class Inhibitor _pdbx_molecule_features.details ? # _pdbx_molecule.instance_id 1 _pdbx_molecule.prd_id PRD_000020 _pdbx_molecule.asym_id D # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id B _pdbx_struct_mod_residue.label_comp_id ASN _pdbx_struct_mod_residue.label_seq_id 53 _pdbx_struct_mod_residue.auth_asym_id H _pdbx_struct_mod_residue.auth_comp_id ASN _pdbx_struct_mod_residue.auth_seq_id 60 _pdbx_struct_mod_residue.PDB_ins_code G _pdbx_struct_mod_residue.parent_comp_id ASN _pdbx_struct_mod_residue.details 'GLYCOSYLATION SITE' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3980 ? 1 MORE -21 ? 1 'SSA (A^2)' 14350 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? B ARG 233 ? H ARG 221 ? 1_555 NA ? G NA . ? H NA 302 ? 1_555 O ? B LYS 236 ? H LYS 224 ? 1_555 91.8 ? 2 O ? B ARG 233 ? H ARG 221 ? 1_555 NA ? G NA . ? H NA 302 ? 1_555 O ? I HOH . ? H HOH 431 ? 1_555 95.3 ? 3 O ? B LYS 236 ? H LYS 224 ? 1_555 NA ? G NA . ? H NA 302 ? 1_555 O ? I HOH . ? H HOH 431 ? 1_555 86.1 ? 4 O ? B ARG 233 ? H ARG 221 ? 1_555 NA ? G NA . ? H NA 302 ? 1_555 O ? I HOH . ? H HOH 432 ? 1_555 101.6 ? 5 O ? B LYS 236 ? H LYS 224 ? 1_555 NA ? G NA . ? H NA 302 ? 1_555 O ? I HOH . ? H HOH 432 ? 1_555 166.6 ? 6 O ? I HOH . ? H HOH 431 ? 1_555 NA ? G NA . ? H NA 302 ? 1_555 O ? I HOH . ? H HOH 432 ? 1_555 93.7 ? 7 O ? B ARG 233 ? H ARG 221 ? 1_555 NA ? G NA . ? H NA 302 ? 1_555 O ? I HOH . ? H HOH 434 ? 1_555 86.4 ? 8 O ? B LYS 236 ? H LYS 224 ? 1_555 NA ? G NA . ? H NA 302 ? 1_555 O ? I HOH . ? H HOH 434 ? 1_555 96.6 ? 9 O ? I HOH . ? H HOH 431 ? 1_555 NA ? G NA . ? H NA 302 ? 1_555 O ? I HOH . ? H HOH 434 ? 1_555 176.8 ? 10 O ? I HOH . ? H HOH 432 ? 1_555 NA ? G NA . ? H NA 302 ? 1_555 O ? I HOH . ? H HOH 434 ? 1_555 83.3 ? 11 O ? B ARG 233 ? H ARG 221 ? 1_555 NA ? G NA . ? H NA 302 ? 1_555 O ? I HOH . ? H HOH 449 ? 1_555 162.2 ? 12 O ? B LYS 236 ? H LYS 224 ? 1_555 NA ? G NA . ? H NA 302 ? 1_555 O ? I HOH . ? H HOH 449 ? 1_555 75.2 ? 13 O ? I HOH . ? H HOH 431 ? 1_555 NA ? G NA . ? H NA 302 ? 1_555 O ? I HOH . ? H HOH 449 ? 1_555 95.9 ? 14 O ? I HOH . ? H HOH 432 ? 1_555 NA ? G NA . ? H NA 302 ? 1_555 O ? I HOH . ? H HOH 449 ? 1_555 91.5 ? 15 O ? I HOH . ? H HOH 434 ? 1_555 NA ? G NA . ? H NA 302 ? 1_555 O ? I HOH . ? H HOH 449 ? 1_555 83.2 ? 16 O6 ? C DG 1 ? D DG 1 ? 1_555 K ? E K . ? H K 303 ? 1_555 O6 ? C DG 2 ? D DG 2 ? 1_555 69.6 ? 17 O6 ? C DG 1 ? D DG 1 ? 1_555 K ? E K . ? H K 303 ? 1_555 O6 ? C DG 5 ? D DG 5 ? 1_555 119.9 ? 18 O6 ? C DG 2 ? D DG 2 ? 1_555 K ? E K . ? H K 303 ? 1_555 O6 ? C DG 5 ? D DG 5 ? 1_555 70.7 ? 19 O6 ? C DG 1 ? D DG 1 ? 1_555 K ? E K . ? H K 303 ? 1_555 O6 ? C DG 6 ? D DG 6 ? 1_555 72.8 ? 20 O6 ? C DG 2 ? D DG 2 ? 1_555 K ? E K . ? H K 303 ? 1_555 O6 ? C DG 6 ? D DG 6 ? 1_555 104.0 ? 21 O6 ? C DG 5 ? D DG 5 ? 1_555 K ? E K . ? H K 303 ? 1_555 O6 ? C DG 6 ? D DG 6 ? 1_555 75.3 ? 22 O6 ? C DG 1 ? D DG 1 ? 1_555 K ? E K . ? H K 303 ? 1_555 O6 ? C DG 10 ? D DG 10 ? 1_555 111.6 ? 23 O6 ? C DG 2 ? D DG 2 ? 1_555 K ? E K . ? H K 303 ? 1_555 O6 ? C DG 10 ? D DG 10 ? 1_555 175.1 ? 24 O6 ? C DG 5 ? D DG 5 ? 1_555 K ? E K . ? H K 303 ? 1_555 O6 ? C DG 10 ? D DG 10 ? 1_555 105.0 ? 25 O6 ? C DG 6 ? D DG 6 ? 1_555 K ? E K . ? H K 303 ? 1_555 O6 ? C DG 10 ? D DG 10 ? 1_555 72.3 ? 26 O6 ? C DG 1 ? D DG 1 ? 1_555 K ? E K . ? H K 303 ? 1_555 O6 ? C DG 11 ? D DG 11 ? 1_555 163.5 ? 27 O6 ? C DG 2 ? D DG 2 ? 1_555 K ? E K . ? H K 303 ? 1_555 O6 ? C DG 11 ? D DG 11 ? 1_555 114.9 ? 28 O6 ? C DG 5 ? D DG 5 ? 1_555 K ? E K . ? H K 303 ? 1_555 O6 ? C DG 11 ? D DG 11 ? 1_555 75.8 ? 29 O6 ? C DG 6 ? D DG 6 ? 1_555 K ? E K . ? H K 303 ? 1_555 O6 ? C DG 11 ? D DG 11 ? 1_555 119.1 ? 30 O6 ? C DG 10 ? D DG 10 ? 1_555 K ? E K . ? H K 303 ? 1_555 O6 ? C DG 11 ? D DG 11 ? 1_555 65.3 ? 31 O6 ? C DG 1 ? D DG 1 ? 1_555 K ? E K . ? H K 303 ? 1_555 O6 ? C DG 14 ? D DG 14 ? 1_555 95.9 ? 32 O6 ? C DG 2 ? D DG 2 ? 1_555 K ? E K . ? H K 303 ? 1_555 O6 ? C DG 14 ? D DG 14 ? 1_555 64.9 ? 33 O6 ? C DG 5 ? D DG 5 ? 1_555 K ? E K . ? H K 303 ? 1_555 O6 ? C DG 14 ? D DG 14 ? 1_555 105.8 ? 34 O6 ? C DG 6 ? D DG 6 ? 1_555 K ? E K . ? H K 303 ? 1_555 O6 ? C DG 14 ? D DG 14 ? 1_555 166.8 ? 35 O6 ? C DG 10 ? D DG 10 ? 1_555 K ? E K . ? H K 303 ? 1_555 O6 ? C DG 14 ? D DG 14 ? 1_555 119.2 ? 36 O6 ? C DG 11 ? D DG 11 ? 1_555 K ? E K . ? H K 303 ? 1_555 O6 ? C DG 14 ? D DG 14 ? 1_555 73.4 ? 37 O6 ? C DG 1 ? D DG 1 ? 1_555 K ? E K . ? H K 303 ? 1_555 O6 ? C DG 15 ? D DG 15 ? 1_555 69.2 ? 38 O6 ? C DG 2 ? D DG 2 ? 1_555 K ? E K . ? H K 303 ? 1_555 O6 ? C DG 15 ? D DG 15 ? 1_555 116.2 ? 39 O6 ? C DG 5 ? D DG 5 ? 1_555 K ? E K . ? H K 303 ? 1_555 O6 ? C DG 15 ? D DG 15 ? 1_555 170.8 ? 40 O6 ? C DG 6 ? D DG 6 ? 1_555 K ? E K . ? H K 303 ? 1_555 O6 ? C DG 15 ? D DG 15 ? 1_555 107.6 ? 41 O6 ? C DG 10 ? D DG 10 ? 1_555 K ? E K . ? H K 303 ? 1_555 O6 ? C DG 15 ? D DG 15 ? 1_555 68.4 ? 42 O6 ? C DG 11 ? D DG 11 ? 1_555 K ? E K . ? H K 303 ? 1_555 O6 ? C DG 15 ? D DG 15 ? 1_555 95.3 ? 43 O6 ? C DG 14 ? D DG 14 ? 1_555 K ? E K . ? H K 303 ? 1_555 O6 ? C DG 15 ? D DG 15 ? 1_555 73.4 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-01-08 2 'Structure model' 1 1 2014-10-29 3 'Structure model' 1 2 2017-11-15 4 'Structure model' 1 3 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Non-polymer description' 2 3 'Structure model' 'Refinement description' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 3 'Structure model' software 2 4 'Structure model' chem_comp 3 4 'Structure model' entity 4 4 'Structure model' pdbx_chem_comp_identifier 5 4 'Structure model' pdbx_entity_nonpoly 6 4 'Structure model' pdbx_struct_conn_angle 7 4 'Structure model' struct_conn 8 4 'Structure model' struct_site 9 4 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 3 'Structure model' '_software.classification' 2 4 'Structure model' '_chem_comp.name' 3 4 'Structure model' '_chem_comp.type' 4 4 'Structure model' '_entity.pdbx_description' 5 4 'Structure model' '_pdbx_entity_nonpoly.name' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 12 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 13 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 14 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 15 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 16 4 'Structure model' '_pdbx_struct_conn_angle.value' 17 4 'Structure model' '_struct_conn.pdbx_dist_value' 18 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 19 4 'Structure model' '_struct_conn.pdbx_ptnr1_PDB_ins_code' 20 4 'Structure model' '_struct_conn.pdbx_role' 21 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 22 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 23 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 24 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 25 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 26 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 27 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 28 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 29 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 30 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 31 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 32 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 33 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 34 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CCP4 refinement 'suite (iMosflm)' ? 1 PHASER phasing . ? 2 REFMAC refinement 5.7.0032 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CB L LEU 14 G ? CG L LEU 14 G ? CD2 L LEU 14 G ? 124.80 111.00 13.80 1.70 N 2 1 CB H ASP 21 ? ? CG H ASP 21 ? ? OD1 H ASP 21 ? ? 124.50 118.30 6.20 0.90 N 3 1 CB H ASP 21 ? ? CG H ASP 21 ? ? OD2 H ASP 21 ? ? 112.82 118.30 -5.48 0.90 N 4 1 NE H ARG 101 ? ? CZ H ARG 101 ? ? NH1 H ARG 101 ? ? 123.46 120.30 3.16 0.50 N 5 1 NE H ARG 165 ? ? CZ H ARG 165 ? ? NH2 H ARG 165 ? ? 116.44 120.30 -3.86 0.50 N 6 1 CB H ASP 186 A ? CG H ASP 186 A ? OD2 H ASP 186 A ? 123.74 118.30 5.44 0.90 N 7 1 CB H ASP 189 ? ? CG H ASP 189 ? ? OD1 H ASP 189 ? ? 128.10 118.30 9.80 0.90 N 8 1 CB H ASP 222 ? ? CG H ASP 222 ? ? OD1 H ASP 222 ? ? 125.91 118.30 7.61 0.90 N 9 1 NE H ARG 233 ? ? CZ H ARG 233 ? ? NH1 H ARG 233 ? ? 124.60 120.30 4.30 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP L 1 A ? -99.91 37.07 2 1 PHE L 7 ? ? -127.24 -87.10 3 1 TYR H 60 A ? -152.23 83.81 4 1 ASN H 60 G ? -160.18 90.89 5 1 HIS H 71 ? ? -127.82 -59.98 6 1 GLU H 97 A ? -95.87 -61.62 7 1 ASN H 98 ? ? -147.34 17.81 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 L THR -5 ? A THR 1 2 1 Y 1 L PHE -4 ? A PHE 2 3 1 Y 1 L GLY -3 ? A GLY 3 4 1 Y 1 L SER -2 ? A SER 4 5 1 Y 1 L GLY -1 ? A GLY 5 6 1 Y 1 L GLU 0 ? A GLU 6 7 1 Y 1 L GLY 15 ? A GLY 35 8 1 Y 1 L ARG 16 ? A ARG 36 9 1 Y 1 H TRP 147 A B TRP 148 10 1 Y 1 H THR 147 B B THR 149 11 1 Y 1 H ALA 147 C B ALA 150 12 1 Y 1 H ASN 147 D B ASN 151 13 1 Y 1 H VAL 147 E B VAL 152 14 1 Y 1 H GLY 147 F B GLY 153 15 1 Y 1 H LYS 147 G B LYS 154 16 1 Y 1 H GLY 147 H B GLY 155 17 1 Y 1 H GLY 246 ? B GLY 258 18 1 Y 1 H GLU 247 ? B GLU 259 # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 4 'D-phenylalanyl-N-[(2S,3S)-6-{[amino(iminio)methyl]amino}-1-chloro-2-hydroxyhexan-3-yl]-L-prolinamide' 0G6 5 'POTASSIUM ION' K 6 2-acetamido-2-deoxy-beta-D-glucopyranose NAG 7 'SODIUM ION' NA 8 water HOH #