HEADER TRANSFERASE 31-JUL-13 4LZA TITLE CRYSTAL STRUCTURE OF ADENINE PHOSPHORIBOSYLTRANSFERASE FROM TITLE 2 THERMOANAEROBACTER PSEUDETHANOLICUS ATCC 33223, NYSGRC TARGET 029700. COMPND MOL_ID: 1; COMPND 2 MOLECULE: ADENINE PHOSPHORIBOSYLTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: APRT; COMPND 5 EC: 2.4.2.7; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOANAEROBACTER PSEUDETHANOLICUS; SOURCE 3 ORGANISM_TAXID: 340099; SOURCE 4 STRAIN: ATCC 33223; SOURCE 5 GENE: 166856274, APT, TETH39_1027; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)CODON+RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: BC-PSGX3(BC) KEYWDS STRUCTURAL GENOMICS, PROTEIN STRUCTURE INITIATIVE, NYSGRC, KEYWDS 2 PHOSPHORIBOSYLTRANSFERASE, PSI-BIOLOGY, NEW YORK STRUCTURAL GENOMICS KEYWDS 3 RESEARCH CONSORTIUM, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR V.N.MALASHKEVICH,R.BHOSLE,R.TORO,B.HILLERICH,A.GIZZI,S.GARFORTH, AUTHOR 2 A.KAR,M.K.CHAN,J.LAFLUER,H.PATEL,B.MATIKAINEN,S.CHAMALA,S.LIM, AUTHOR 3 A.CELIKGIL,G.VILLEGAS,B.EVANS,J.LOVE,A.FISER,K.KHAFIZOV,R.SEIDEL, AUTHOR 4 J.B.BONANNO,S.C.ALMO,NEW YORK STRUCTURAL GENOMICS RESEARCH AUTHOR 5 CONSORTIUM (NYSGRC) REVDAT 3 06-DEC-23 4LZA 1 REMARK REVDAT 2 20-SEP-23 4LZA 1 REMARK SEQADV LINK REVDAT 1 14-AUG-13 4LZA 0 JRNL AUTH V.N.MALASHKEVICH,R.BHOSLE,R.TORO,B.HILLERICH,A.GIZZI, JRNL AUTH 2 S.GARFORTH,A.KAR,M.K.CHAN,J.LAFLUER,H.PATEL,B.MATIKAINEN, JRNL AUTH 3 S.CHAMALA,S.LIM,A.CELIKGIL,G.VILLEGAS,B.EVANS,J.LOVE, JRNL AUTH 4 A.FISER,K.KHAFIZOV,R.SEIDEL,J.B.BONANNO,S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF ADENINE PHOSPHORIBOSYLTRANSFERASE FROM JRNL TITL 2 THERMOANAEROBACTER PSEUDETHANOLICUS ATCC 33223, NYSGRC JRNL TITL 3 TARGET 029700. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.84 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.84 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 34654 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.205 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1747 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.84 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.89 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2392 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.68 REMARK 3 BIN R VALUE (WORKING SET) : 0.3210 REMARK 3 BIN FREE R VALUE SET COUNT : 119 REMARK 3 BIN FREE R VALUE : 0.3140 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2661 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 171 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -12.45000 REMARK 3 B22 (A**2) : 49.38000 REMARK 3 B33 (A**2) : -36.93000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.029 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.027 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.059 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.056 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2733 ; 0.008 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3692 ; 1.324 ; 2.020 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 347 ; 5.756 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 106 ;35.847 ;24.057 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 494 ;14.755 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 14 ;15.733 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 427 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1994 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1367 ; 1.725 ; 4.304 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1706 ; 2.826 ;57.855 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1366 ; 2.967 ; 5.035 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 171 REMARK 3 ORIGIN FOR THE GROUP (A): -6.7040 2.6021 -14.7786 REMARK 3 T TENSOR REMARK 3 T11: 0.0876 T22: 0.0332 REMARK 3 T33: 0.1081 T12: 0.0090 REMARK 3 T13: -0.0048 T23: -0.0130 REMARK 3 L TENSOR REMARK 3 L11: 0.2586 L22: 0.3434 REMARK 3 L33: 0.6013 L12: -0.0556 REMARK 3 L13: -0.1854 L23: 0.1645 REMARK 3 S TENSOR REMARK 3 S11: -0.0075 S12: 0.0343 S13: 0.0001 REMARK 3 S21: 0.0017 S22: 0.0310 S23: 0.0146 REMARK 3 S31: 0.0321 S32: 0.0894 S33: -0.0235 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 0 B 171 REMARK 3 ORIGIN FOR THE GROUP (A): -10.7352 7.4612 6.6055 REMARK 3 T TENSOR REMARK 3 T11: 0.1005 T22: 0.0090 REMARK 3 T33: 0.1320 T12: 0.0088 REMARK 3 T13: 0.0057 T23: 0.0081 REMARK 3 L TENSOR REMARK 3 L11: 0.3827 L22: 0.2522 REMARK 3 L33: 0.5800 L12: 0.0183 REMARK 3 L13: 0.0910 L23: -0.0535 REMARK 3 S TENSOR REMARK 3 S11: -0.0190 S12: -0.0230 S13: 0.0098 REMARK 3 S21: 0.0199 S22: 0.0090 S23: 0.0242 REMARK 3 S31: 0.0343 S32: 0.0537 S33: 0.0100 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: U VALUES : WITH TLS ADDED HYDROGENS REMARK 3 HAVE BEEN USED IF PRESENT IN THE INPUT REMARK 4 REMARK 4 4LZA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-AUG-13. REMARK 100 THE DEPOSITION ID IS D_1000081269. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.2.5 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34721 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.840 REMARK 200 RESOLUTION RANGE LOW (A) : 19.803 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 14.10 REMARK 200 R MERGE (I) : 0.14100 REMARK 200 R SYM (I) : 0.14100 REMARK 200 FOR THE DATA SET : 10.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.84 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.94 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 14.10 REMARK 200 R MERGE FOR SHELL (I) : 0.01000 REMARK 200 R SYM FOR SHELL (I) : 1.00900 REMARK 200 FOR SHELL : 0.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.1 REMARK 200 STARTING MODEL: PDB ENTRY 2DY0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.67 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.22 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 CALCIUM CHLORIDE, 0.1 M REMARK 280 HEPES:NAOH, PH 7.5, 30% PEG 4000, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 29.47500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.76100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.95700 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 43.76100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 29.47500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.95700 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: DIMERIC REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3200 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14770 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -19.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -23 REMARK 465 HIS A -22 REMARK 465 HIS A -21 REMARK 465 HIS A -20 REMARK 465 HIS A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 SER A -16 REMARK 465 SER A -15 REMARK 465 GLY A -14 REMARK 465 VAL A -13 REMARK 465 ASP A -12 REMARK 465 LEU A -11 REMARK 465 GLY A -10 REMARK 465 THR A -9 REMARK 465 GLU A -8 REMARK 465 ASN A -7 REMARK 465 LEU A -6 REMARK 465 TYR A -5 REMARK 465 PHE A -4 REMARK 465 GLN A -3 REMARK 465 SER A -2 REMARK 465 MSE A -1 REMARK 465 LEU A 95 REMARK 465 GLU A 96 REMARK 465 TYR A 97 REMARK 465 GLY A 98 REMARK 465 MSE B -23 REMARK 465 HIS B -22 REMARK 465 HIS B -21 REMARK 465 HIS B -20 REMARK 465 HIS B -19 REMARK 465 HIS B -18 REMARK 465 HIS B -17 REMARK 465 SER B -16 REMARK 465 SER B -15 REMARK 465 GLY B -14 REMARK 465 VAL B -13 REMARK 465 ASP B -12 REMARK 465 LEU B -11 REMARK 465 GLY B -10 REMARK 465 THR B -9 REMARK 465 GLU B -8 REMARK 465 ASN B -7 REMARK 465 LEU B -6 REMARK 465 TYR B -5 REMARK 465 PHE B -4 REMARK 465 GLN B -3 REMARK 465 SER B -2 REMARK 465 MSE B -1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 123 -108.40 -106.02 REMARK 500 LEU A 160 33.03 -98.68 REMARK 500 ALA B 123 -106.21 -104.32 REMARK 500 LEU B 160 35.86 -95.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGRC-029700 RELATED DB: TARGETTRACK DBREF 4LZA A -1 171 UNP B0K969 APT_THEP3 1 173 DBREF 4LZA B -1 171 UNP B0K969 APT_THEP3 1 173 SEQADV 4LZA MSE A -23 UNP B0K969 EXPRESSION TAG SEQADV 4LZA HIS A -22 UNP B0K969 EXPRESSION TAG SEQADV 4LZA HIS A -21 UNP B0K969 EXPRESSION TAG SEQADV 4LZA HIS A -20 UNP B0K969 EXPRESSION TAG SEQADV 4LZA HIS A -19 UNP B0K969 EXPRESSION TAG SEQADV 4LZA HIS A -18 UNP B0K969 EXPRESSION TAG SEQADV 4LZA HIS A -17 UNP B0K969 EXPRESSION TAG SEQADV 4LZA SER A -16 UNP B0K969 EXPRESSION TAG SEQADV 4LZA SER A -15 UNP B0K969 EXPRESSION TAG SEQADV 4LZA GLY A -14 UNP B0K969 EXPRESSION TAG SEQADV 4LZA VAL A -13 UNP B0K969 EXPRESSION TAG SEQADV 4LZA ASP A -12 UNP B0K969 EXPRESSION TAG SEQADV 4LZA LEU A -11 UNP B0K969 EXPRESSION TAG SEQADV 4LZA GLY A -10 UNP B0K969 EXPRESSION TAG SEQADV 4LZA THR A -9 UNP B0K969 EXPRESSION TAG SEQADV 4LZA GLU A -8 UNP B0K969 EXPRESSION TAG SEQADV 4LZA ASN A -7 UNP B0K969 EXPRESSION TAG SEQADV 4LZA LEU A -6 UNP B0K969 EXPRESSION TAG SEQADV 4LZA TYR A -5 UNP B0K969 EXPRESSION TAG SEQADV 4LZA PHE A -4 UNP B0K969 EXPRESSION TAG SEQADV 4LZA GLN A -3 UNP B0K969 EXPRESSION TAG SEQADV 4LZA SER A -2 UNP B0K969 EXPRESSION TAG SEQADV 4LZA MSE B -23 UNP B0K969 EXPRESSION TAG SEQADV 4LZA HIS B -22 UNP B0K969 EXPRESSION TAG SEQADV 4LZA HIS B -21 UNP B0K969 EXPRESSION TAG SEQADV 4LZA HIS B -20 UNP B0K969 EXPRESSION TAG SEQADV 4LZA HIS B -19 UNP B0K969 EXPRESSION TAG SEQADV 4LZA HIS B -18 UNP B0K969 EXPRESSION TAG SEQADV 4LZA HIS B -17 UNP B0K969 EXPRESSION TAG SEQADV 4LZA SER B -16 UNP B0K969 EXPRESSION TAG SEQADV 4LZA SER B -15 UNP B0K969 EXPRESSION TAG SEQADV 4LZA GLY B -14 UNP B0K969 EXPRESSION TAG SEQADV 4LZA VAL B -13 UNP B0K969 EXPRESSION TAG SEQADV 4LZA ASP B -12 UNP B0K969 EXPRESSION TAG SEQADV 4LZA LEU B -11 UNP B0K969 EXPRESSION TAG SEQADV 4LZA GLY B -10 UNP B0K969 EXPRESSION TAG SEQADV 4LZA THR B -9 UNP B0K969 EXPRESSION TAG SEQADV 4LZA GLU B -8 UNP B0K969 EXPRESSION TAG SEQADV 4LZA ASN B -7 UNP B0K969 EXPRESSION TAG SEQADV 4LZA LEU B -6 UNP B0K969 EXPRESSION TAG SEQADV 4LZA TYR B -5 UNP B0K969 EXPRESSION TAG SEQADV 4LZA PHE B -4 UNP B0K969 EXPRESSION TAG SEQADV 4LZA GLN B -3 UNP B0K969 EXPRESSION TAG SEQADV 4LZA SER B -2 UNP B0K969 EXPRESSION TAG SEQRES 1 A 195 MSE HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 A 195 GLY THR GLU ASN LEU TYR PHE GLN SER MSE THR LEU GLU SEQRES 3 A 195 GLU ILE LYS MSE MSE ILE ARG GLU ILE PRO ASP PHE PRO SEQRES 4 A 195 LYS LYS GLY ILE LYS PHE LYS ASP ILE THR PRO VAL LEU SEQRES 5 A 195 LYS ASP ALA LYS ALA PHE ASN TYR SER ILE GLU MSE LEU SEQRES 6 A 195 ALA LYS ALA LEU GLU GLY ARG LYS PHE ASP LEU ILE ALA SEQRES 7 A 195 ALA PRO GLU ALA ARG GLY PHE LEU PHE GLY ALA PRO LEU SEQRES 8 A 195 ALA TYR ARG LEU GLY VAL GLY PHE VAL PRO VAL ARG LYS SEQRES 9 A 195 PRO GLY LYS LEU PRO ALA GLU THR LEU SER TYR GLU TYR SEQRES 10 A 195 GLU LEU GLU TYR GLY THR ASP SER LEU GLU ILE HIS LYS SEQRES 11 A 195 ASP ALA VAL LEU GLU GLY GLN ARG VAL VAL ILE VAL ASP SEQRES 12 A 195 ASP LEU LEU ALA THR GLY GLY THR ILE TYR ALA SER ALA SEQRES 13 A 195 LYS LEU VAL GLU SER LEU GLY GLY ILE VAL ASP SER ILE SEQRES 14 A 195 ILE PHE LEU THR GLU LEU THR PHE LEU ASP GLY ARG LYS SEQRES 15 A 195 LYS LEU ASP GLY TYR ASP ILE ILE SER LEU ILE LYS PHE SEQRES 1 B 195 MSE HIS HIS HIS HIS HIS HIS SER SER GLY VAL ASP LEU SEQRES 2 B 195 GLY THR GLU ASN LEU TYR PHE GLN SER MSE THR LEU GLU SEQRES 3 B 195 GLU ILE LYS MSE MSE ILE ARG GLU ILE PRO ASP PHE PRO SEQRES 4 B 195 LYS LYS GLY ILE LYS PHE LYS ASP ILE THR PRO VAL LEU SEQRES 5 B 195 LYS ASP ALA LYS ALA PHE ASN TYR SER ILE GLU MSE LEU SEQRES 6 B 195 ALA LYS ALA LEU GLU GLY ARG LYS PHE ASP LEU ILE ALA SEQRES 7 B 195 ALA PRO GLU ALA ARG GLY PHE LEU PHE GLY ALA PRO LEU SEQRES 8 B 195 ALA TYR ARG LEU GLY VAL GLY PHE VAL PRO VAL ARG LYS SEQRES 9 B 195 PRO GLY LYS LEU PRO ALA GLU THR LEU SER TYR GLU TYR SEQRES 10 B 195 GLU LEU GLU TYR GLY THR ASP SER LEU GLU ILE HIS LYS SEQRES 11 B 195 ASP ALA VAL LEU GLU GLY GLN ARG VAL VAL ILE VAL ASP SEQRES 12 B 195 ASP LEU LEU ALA THR GLY GLY THR ILE TYR ALA SER ALA SEQRES 13 B 195 LYS LEU VAL GLU SER LEU GLY GLY ILE VAL ASP SER ILE SEQRES 14 B 195 ILE PHE LEU THR GLU LEU THR PHE LEU ASP GLY ARG LYS SEQRES 15 B 195 LYS LEU ASP GLY TYR ASP ILE ILE SER LEU ILE LYS PHE MODRES 4LZA MSE A 6 MET SELENOMETHIONINE MODRES 4LZA MSE A 7 MET SELENOMETHIONINE MODRES 4LZA MSE A 40 MET SELENOMETHIONINE MODRES 4LZA MSE B 6 MET SELENOMETHIONINE MODRES 4LZA MSE B 7 MET SELENOMETHIONINE MODRES 4LZA MSE B 40 MET SELENOMETHIONINE HET MSE A 6 8 HET MSE A 7 8 HET MSE A 40 8 HET MSE B 6 8 HET MSE B 7 8 HET MSE B 40 8 HET CL A 201 1 HETNAM MSE SELENOMETHIONINE HETNAM CL CHLORIDE ION FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 3 CL CL 1- FORMUL 4 HOH *171(H2 O) HELIX 1 1 THR A 0 MSE A 7 1 8 HELIX 2 2 ILE A 24 ASP A 30 1 7 HELIX 3 3 ASP A 30 LEU A 45 1 16 HELIX 4 4 GLY A 60 GLY A 72 1 13 HELIX 5 5 GLY A 125 LEU A 138 1 14 HELIX 6 6 THR A 152 LEU A 154 5 3 HELIX 7 7 ASP A 155 LEU A 160 1 6 HELIX 8 8 LEU B 1 ILE B 8 1 8 HELIX 9 9 ILE B 24 ASP B 30 1 7 HELIX 10 10 ASP B 30 LEU B 45 1 16 HELIX 11 11 ALA B 58 GLY B 72 1 15 HELIX 12 12 GLY B 125 LEU B 138 1 14 HELIX 13 13 ASP B 155 LEU B 160 1 6 SHEET 1 A 2 ARG A 9 PRO A 12 0 SHEET 2 A 2 LYS A 20 ASP A 23 -1 O ASP A 23 N ARG A 9 SHEET 1 B 5 GLY A 74 VAL A 78 0 SHEET 2 B 5 LEU A 52 PRO A 56 1 N ILE A 53 O VAL A 76 SHEET 3 B 5 ARG A 114 LEU A 122 1 O VAL A 118 N ALA A 54 SHEET 4 B 5 ILE A 141 GLU A 150 1 O ILE A 141 N VAL A 115 SHEET 5 B 5 ILE A 165 LYS A 170 1 O ILE A 166 N ILE A 145 SHEET 1 C 2 THR A 88 TYR A 93 0 SHEET 2 C 2 ASP A 100 HIS A 105 -1 O ASP A 100 N TYR A 93 SHEET 1 D 2 ARG B 9 PRO B 12 0 SHEET 2 D 2 LYS B 20 ASP B 23 -1 O ASP B 23 N ARG B 9 SHEET 1 E 5 GLY B 74 VAL B 78 0 SHEET 2 E 5 LEU B 52 PRO B 56 1 N ALA B 55 O VAL B 78 SHEET 3 E 5 ARG B 114 LEU B 122 1 O VAL B 116 N LEU B 52 SHEET 4 E 5 ILE B 141 GLU B 150 1 O ILE B 141 N VAL B 115 SHEET 5 E 5 ILE B 165 LYS B 170 1 O ILE B 166 N ILE B 145 SHEET 1 F 2 THR B 88 LEU B 95 0 SHEET 2 F 2 GLY B 98 HIS B 105 -1 O GLY B 98 N LEU B 95 LINK C LYS A 5 N MSE A 6 1555 1555 1.33 LINK C MSE A 6 N MSE A 7 1555 1555 1.33 LINK C MSE A 7 N ILE A 8 1555 1555 1.33 LINK C GLU A 39 N MSE A 40 1555 1555 1.33 LINK C MSE A 40 N LEU A 41 1555 1555 1.33 LINK C LYS B 5 N MSE B 6 1555 1555 1.33 LINK C MSE B 6 N MSE B 7 1555 1555 1.33 LINK C MSE B 7 N ILE B 8 1555 1555 1.33 LINK C GLU B 39 N MSE B 40 1555 1555 1.33 LINK C MSE B 40 N LEU B 41 1555 1555 1.34 CISPEP 1 PHE A 14 PRO A 15 0 6.12 CISPEP 2 GLU A 57 ALA A 58 0 -9.81 CISPEP 3 PHE B 14 PRO B 15 0 -3.72 CISPEP 4 GLU B 57 ALA B 58 0 -6.01 SITE 1 AC1 5 SER A 167 LYS A 170 ILE B 166 SER B 167 SITE 2 AC1 5 LYS B 170 CRYST1 58.950 75.914 87.522 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016964 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013173 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011426 0.00000