HEADER CELL ADHESION 01-AUG-13 4M00 TITLE CRYSTAL STRUCTURE OF THE LIGAND BINDING REGION OF STAPHYLOCOCCAL TITLE 2 ADHESION SRAP COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE-RICH ADHESIN FOR PLATELETS; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: LIGAND BINDING REGION, UNP RESIDUES 245-751; COMPND 5 SYNONYM: STAPHYLOCOCCUS AUREUS SURFACE PROTEIN A; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STAPHYLOCOCCUS AUREUS; SOURCE 3 ORGANISM_TAXID: 93061; SOURCE 4 STRAIN: NCTC 8325; SOURCE 5 GENE: SRAP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS ALL BETA, ADHESION, CARBOHYDRATE/SUGAR BINDING, CELL ADHESION EXPDTA X-RAY DIFFRACTION AUTHOR Y.H.YANG,Y.L.JIANG,J.ZHANG,L.WANG,Y.CHEN,C.Z.ZHOU REVDAT 3 08-NOV-23 4M00 1 HETSYN REVDAT 2 29-JUL-20 4M00 1 COMPND REMARK SEQADV HET REVDAT 2 2 1 HETNAM FORMUL LINK SITE REVDAT 2 3 1 ATOM REVDAT 1 18-JUN-14 4M00 0 JRNL AUTH Y.H.YANG,Y.L.JIANG,J.ZHANG,L.WANG,X.H.BAI,S.J.ZHANG,Y.M.REN, JRNL AUTH 2 N.LI,Y.H.ZHANG,Z.ZHANG,Q.GONG,Y.MEI,T.XUE,J.R.ZHANG,Y.CHEN, JRNL AUTH 3 C.Z.ZHOU JRNL TITL STRUCTURAL INSIGHTS INTO SRAP-MEDIATED STAPHYLOCOCCUS AUREUS JRNL TITL 2 ADHESION TO HOST CELLS JRNL REF PLOS PATHOG. V. 10 04169 2014 JRNL REFN ISSN 1553-7366 JRNL PMID 24901708 JRNL DOI 10.1371/JOURNAL.PPAT.1004169 REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.54 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 65677 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3503 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4519 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.39 REMARK 3 BIN R VALUE (WORKING SET) : 0.2740 REMARK 3 BIN FREE R VALUE SET COUNT : 245 REMARK 3 BIN FREE R VALUE : 0.2920 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3675 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 38 REMARK 3 SOLVENT ATOMS : 618 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.55 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.74000 REMARK 3 B22 (A**2) : -0.74000 REMARK 3 B33 (A**2) : 1.10000 REMARK 3 B12 (A**2) : -0.37000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.113 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.110 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.070 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.558 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3771 ; 0.010 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5161 ; 1.350 ; 1.940 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 500 ; 6.700 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 147 ;37.690 ;26.531 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 562 ;11.329 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ;21.027 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 637 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2809 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4M00 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 09-AUG-13. REMARK 100 THE DEPOSITION ID IS D_1000081293. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 16-APR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97930 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 69226 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.13700 REMARK 200 R SYM (I) : 0.13700 REMARK 200 FOR THE DATA SET : 13.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : 0.38500 REMARK 200 R SYM FOR SHELL (I) : 0.38500 REMARK 200 FOR SHELL : 5.754 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 4M01 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 74.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.87 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.8M AMMONIUM SULFATE, 0.1M MES, PH REMARK 280 6.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 301K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 90.93800 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 45.46900 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 45.46900 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 90.93800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 211 REMARK 465 GLY A 212 REMARK 465 SER A 213 REMARK 465 SER A 214 REMARK 465 HIS A 215 REMARK 465 HIS A 216 REMARK 465 HIS A 217 REMARK 465 HIS A 218 REMARK 465 HIS A 219 REMARK 465 HIS A 220 REMARK 465 SER A 221 REMARK 465 SER A 222 REMARK 465 GLY A 223 REMARK 465 LEU A 224 REMARK 465 VAL A 225 REMARK 465 PRO A 226 REMARK 465 ARG A 227 REMARK 465 GLY A 228 REMARK 465 SER A 229 REMARK 465 HIS A 230 REMARK 465 MET A 231 REMARK 465 ALA A 232 REMARK 465 SER A 233 REMARK 465 MET A 234 REMARK 465 THR A 235 REMARK 465 GLY A 236 REMARK 465 GLY A 237 REMARK 465 GLN A 238 REMARK 465 GLN A 239 REMARK 465 MET A 240 REMARK 465 GLY A 241 REMARK 465 ARG A 242 REMARK 465 GLY A 243 REMARK 465 SER A 244 REMARK 465 PHE A 245 REMARK 465 ALA A 246 REMARK 465 SER A 247 REMARK 465 ALA A 248 REMARK 465 ALA A 249 REMARK 465 THR A 250 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 533 CA - CB - CG ANGL. DEV. = -17.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 311 112.36 -161.34 REMARK 500 ASN A 425 24.97 -160.29 REMARK 500 ASN A 480 147.07 -170.24 REMARK 500 ASP A 521 -2.55 73.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 801 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 365 OD2 REMARK 620 2 ASP A 365 OD1 52.9 REMARK 620 3 TYR A 367 O 117.6 75.2 REMARK 620 4 ASN A 369 OD1 156.9 150.0 82.0 REMARK 620 5 ASP A 382 OD2 82.6 109.4 84.9 87.5 REMARK 620 6 HOH A 901 O 106.8 79.7 93.7 82.5 169.9 REMARK 620 7 HOH A 902 O 78.3 126.0 158.0 79.7 82.1 96.0 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 802 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 573 OD2 REMARK 620 2 ASP A 573 OD1 53.1 REMARK 620 3 LYS A 575 O 132.9 83.9 REMARK 620 4 ASP A 601 OD1 140.0 160.2 86.8 REMARK 620 5 ASP A 601 OD2 88.1 136.1 138.6 51.9 REMARK 620 6 ASN A 602 OD1 98.7 80.0 90.6 82.7 87.8 REMARK 620 7 ASP A 645 OD2 83.3 99.4 86.3 97.4 94.6 176.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 803 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 661 OD1 REMARK 620 2 ASP A 661 OD2 51.1 REMARK 620 3 THR A 663 O 79.7 128.3 REMARK 620 4 ASP A 690 OD2 131.5 83.1 148.4 REMARK 620 5 ASP A 690 OD1 169.1 134.7 96.6 51.8 REMARK 620 6 ASN A 691 OD1 86.1 95.6 95.7 83.0 84.1 REMARK 620 7 ASP A 734 OD2 90.4 82.6 83.1 99.7 99.4 176.5 REMARK 620 N 1 2 3 4 5 6 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4M01 RELATED DB: PDB REMARK 900 RELATED ID: 4M02 RELATED DB: PDB REMARK 900 RELATED ID: 4M03 RELATED DB: PDB DBREF 4M00 A 245 751 UNP Q2FUW1 SRAP_STAA8 245 751 SEQADV 4M00 MET A 211 UNP Q2FUW1 EXPRESSION TAG SEQADV 4M00 GLY A 212 UNP Q2FUW1 EXPRESSION TAG SEQADV 4M00 SER A 213 UNP Q2FUW1 EXPRESSION TAG SEQADV 4M00 SER A 214 UNP Q2FUW1 EXPRESSION TAG SEQADV 4M00 HIS A 215 UNP Q2FUW1 EXPRESSION TAG SEQADV 4M00 HIS A 216 UNP Q2FUW1 EXPRESSION TAG SEQADV 4M00 HIS A 217 UNP Q2FUW1 EXPRESSION TAG SEQADV 4M00 HIS A 218 UNP Q2FUW1 EXPRESSION TAG SEQADV 4M00 HIS A 219 UNP Q2FUW1 EXPRESSION TAG SEQADV 4M00 HIS A 220 UNP Q2FUW1 EXPRESSION TAG SEQADV 4M00 SER A 221 UNP Q2FUW1 EXPRESSION TAG SEQADV 4M00 SER A 222 UNP Q2FUW1 EXPRESSION TAG SEQADV 4M00 GLY A 223 UNP Q2FUW1 EXPRESSION TAG SEQADV 4M00 LEU A 224 UNP Q2FUW1 EXPRESSION TAG SEQADV 4M00 VAL A 225 UNP Q2FUW1 EXPRESSION TAG SEQADV 4M00 PRO A 226 UNP Q2FUW1 EXPRESSION TAG SEQADV 4M00 ARG A 227 UNP Q2FUW1 EXPRESSION TAG SEQADV 4M00 GLY A 228 UNP Q2FUW1 EXPRESSION TAG SEQADV 4M00 SER A 229 UNP Q2FUW1 EXPRESSION TAG SEQADV 4M00 HIS A 230 UNP Q2FUW1 EXPRESSION TAG SEQADV 4M00 MET A 231 UNP Q2FUW1 EXPRESSION TAG SEQADV 4M00 ALA A 232 UNP Q2FUW1 EXPRESSION TAG SEQADV 4M00 SER A 233 UNP Q2FUW1 EXPRESSION TAG SEQADV 4M00 MET A 234 UNP Q2FUW1 EXPRESSION TAG SEQADV 4M00 THR A 235 UNP Q2FUW1 EXPRESSION TAG SEQADV 4M00 GLY A 236 UNP Q2FUW1 EXPRESSION TAG SEQADV 4M00 GLY A 237 UNP Q2FUW1 EXPRESSION TAG SEQADV 4M00 GLN A 238 UNP Q2FUW1 EXPRESSION TAG SEQADV 4M00 GLN A 239 UNP Q2FUW1 EXPRESSION TAG SEQADV 4M00 MET A 240 UNP Q2FUW1 EXPRESSION TAG SEQADV 4M00 GLY A 241 UNP Q2FUW1 EXPRESSION TAG SEQADV 4M00 ARG A 242 UNP Q2FUW1 EXPRESSION TAG SEQADV 4M00 GLY A 243 UNP Q2FUW1 EXPRESSION TAG SEQADV 4M00 SER A 244 UNP Q2FUW1 EXPRESSION TAG SEQRES 1 A 541 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 541 LEU VAL PRO ARG GLY SER HIS MET ALA SER MET THR GLY SEQRES 3 A 541 GLY GLN GLN MET GLY ARG GLY SER PHE ALA SER ALA ALA SEQRES 4 A 541 THR THR THR ALA VAL THR ALA ASN THR ILE THR VAL ASN SEQRES 5 A 541 LYS ASP ASN LEU LYS GLN TYR MET THR THR SER GLY ASN SEQRES 6 A 541 ALA THR TYR ASP GLN SER THR GLY ILE VAL THR LEU THR SEQRES 7 A 541 GLN ASP ALA TYR SER GLN LYS GLY ALA ILE THR LEU GLY SEQRES 8 A 541 THR ARG ILE ASP SER ASN LYS SER PHE HIS PHE SER GLY SEQRES 9 A 541 LYS VAL ASN LEU GLY ASN LYS TYR GLU GLY HIS GLY ASN SEQRES 10 A 541 GLY GLY ASP GLY ILE GLY PHE ALA PHE SER PRO GLY VAL SEQRES 11 A 541 LEU GLY GLU THR GLY LEU ASN GLY ALA ALA VAL GLY ILE SEQRES 12 A 541 GLY GLY LEU SER ASN ALA PHE GLY PHE LYS LEU ASP THR SEQRES 13 A 541 TYR HIS ASN THR SER LYS PRO ASN SER ALA ALA LYS ALA SEQRES 14 A 541 ASN ALA ASP PRO SER ASN VAL ALA GLY GLY GLY ALA PHE SEQRES 15 A 541 GLY ALA PHE VAL THR THR ASP SER TYR GLY VAL ALA THR SEQRES 16 A 541 THR TYR THR SER SER SER THR ALA ASP ASN ALA ALA LYS SEQRES 17 A 541 LEU ASN VAL GLN PRO THR ASN ASN THR PHE GLN ASP PHE SEQRES 18 A 541 ASP ILE ASN TYR ASN GLY ASP THR LYS VAL MET THR VAL SEQRES 19 A 541 LYS TYR ALA GLY GLN THR TRP THR ARG ASN ILE SER ASP SEQRES 20 A 541 TRP ILE ALA LYS SER GLY THR THR ASN PHE SER LEU SER SEQRES 21 A 541 MET THR ALA SER THR GLY GLY ALA THR ASN LEU GLN GLN SEQRES 22 A 541 VAL GLN PHE GLY THR PHE GLU TYR THR GLU SER ALA VAL SEQRES 23 A 541 THR GLN VAL ARG TYR VAL ASP VAL THR THR GLY LYS ASP SEQRES 24 A 541 ILE ILE PRO PRO LYS THR TYR SER GLY ASN VAL ASP GLN SEQRES 25 A 541 VAL VAL THR ILE ASP ASN GLN GLN SER ALA LEU THR ALA SEQRES 26 A 541 LYS GLY TYR ASN TYR THR SER VAL ASP SER SER TYR ALA SEQRES 27 A 541 SER THR TYR ASN ASP THR ASN LYS THR VAL LYS MET THR SEQRES 28 A 541 ASN ALA GLY GLN SER VAL THR TYR TYR PHE THR ASP VAL SEQRES 29 A 541 LYS ALA PRO THR VAL THR VAL GLY ASN GLN THR ILE GLU SEQRES 30 A 541 VAL GLY LYS THR MET ASN PRO ILE VAL LEU THR THR THR SEQRES 31 A 541 ASP ASN GLY THR GLY THR VAL THR ASN THR VAL THR GLY SEQRES 32 A 541 LEU PRO SER GLY LEU SER TYR ASP SER ALA THR ASN SER SEQRES 33 A 541 ILE ILE GLY THR PRO THR LYS ILE GLY GLN SER THR VAL SEQRES 34 A 541 THR VAL VAL SER THR ASP GLN ALA ASN ASN LYS SER THR SEQRES 35 A 541 THR THR PHE THR ILE ASN VAL VAL ASP THR THR ALA PRO SEQRES 36 A 541 THR VAL THR PRO ILE GLY ASP GLN SER SER GLU VAL TYR SEQRES 37 A 541 SER PRO ILE SER PRO ILE LYS ILE ALA THR GLN ASP ASN SEQRES 38 A 541 SER GLY ASN ALA VAL THR ASN THR VAL THR GLY LEU PRO SEQRES 39 A 541 SER GLY LEU THR PHE ASP SER THR ASN ASN THR ILE SER SEQRES 40 A 541 GLY THR PRO THR ASN ILE GLY THR SER THR ILE SER ILE SEQRES 41 A 541 VAL SER THR ASP ALA SER GLY ASN LYS THR THR THR THR SEQRES 42 A 541 PHE LYS TYR GLU VAL THR ARG ASN HET GLC B 1 11 HET FRU B 2 12 HET CA A 801 1 HET CA A 802 1 HET CA A 803 1 HET MES A 805 12 HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM FRU BETA-D-FRUCTOFURANOSE HETNAM CA CALCIUM ION HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN FRU BETA-D-FRUCTOSE; D-FRUCTOSE; FRUCTOSE FORMUL 2 GLC C6 H12 O6 FORMUL 2 FRU C6 H12 O6 FORMUL 3 CA 3(CA 2+) FORMUL 6 MES C6 H13 N O4 S FORMUL 7 HOH *618(H2 O) HELIX 1 1 ASN A 265 TYR A 269 1 5 HELIX 2 2 ASN A 347 VAL A 351 5 5 HELIX 3 3 ASN A 374 LYS A 378 5 5 HELIX 4 4 PRO A 383 ALA A 387 5 5 HELIX 5 5 ILE A 455 SER A 462 1 8 HELIX 6 6 GLN A 529 LYS A 536 1 8 SHEET 1 A11 GLN A 449 ASN A 454 0 SHEET 2 A11 VAL A 441 TYR A 446 -1 N VAL A 444 O TRP A 451 SHEET 3 A11 GLN A 429 TYR A 435 -1 N ASN A 434 O THR A 443 SHEET 4 A11 PHE A 310 ASN A 317 -1 N PHE A 310 O TYR A 435 SHEET 5 A11 GLN A 482 SER A 494 -1 O GLN A 485 N LYS A 315 SHEET 6 A11 ARG A 303 ASP A 305 -1 N ASP A 305 O THR A 282 SHEET 7 A11 ASN A 466 SER A 474 -1 O PHE A 467 N ILE A 304 SHEET 8 A11 GLY A 331 SER A 337 -1 N GLY A 333 O THR A 472 SHEET 9 A11 PHE A 360 ASP A 365 -1 O PHE A 360 N PHE A 336 SHEET 10 A11 PHE A 392 THR A 398 -1 O PHE A 392 N ASP A 365 SHEET 11 A11 ALA A 417 LYS A 418 -1 O ALA A 417 N GLY A 393 SHEET 1 B 7 MET A 270 GLY A 274 0 SHEET 2 B 7 LYS A 295 LEU A 300 -1 O ALA A 297 N SER A 273 SHEET 3 B 7 ASN A 466 SER A 474 -1 O ALA A 473 N GLY A 296 SHEET 4 B 7 GLY A 331 SER A 337 -1 N GLY A 333 O THR A 472 SHEET 5 B 7 PHE A 360 ASP A 365 -1 O PHE A 360 N PHE A 336 SHEET 6 B 7 PHE A 392 THR A 398 -1 O PHE A 392 N ASP A 365 SHEET 7 B 7 ALA A 404 THR A 406 -1 O THR A 405 N THR A 397 SHEET 1 C 4 THR A 258 VAL A 261 0 SHEET 2 C 4 GLN A 482 SER A 494 -1 O PHE A 489 N VAL A 261 SHEET 3 C 4 ILE A 284 THR A 288 -1 N VAL A 285 O VAL A 484 SHEET 4 C 4 THR A 277 ASP A 279 -1 N THR A 277 O THR A 286 SHEET 1 D 4 LYS A 514 SER A 517 0 SHEET 2 D 4 VAL A 496 ASP A 503 -1 N VAL A 499 O LYS A 514 SHEET 3 D 4 GLN A 565 ASP A 573 1 O TYR A 569 N ARG A 500 SHEET 4 D 4 TYR A 538 ASP A 544 -1 N ASP A 544 O THR A 568 SHEET 1 E 2 VAL A 523 THR A 525 0 SHEET 2 E 2 THR A 557 LYS A 559 -1 O VAL A 558 N VAL A 524 SHEET 1 F 2 THR A 578 THR A 370 0 SHEET 2 F 2 THR A 598 THR A 600 -1 O THR A 600 N THR A 578 SHEET 1 G 4 GLN A 584 GLU A 587 0 SHEET 2 G 4 LYS A 440 VAL A 660 1 O ASN A 658 N GLN A 584 SHEET 3 G 4 GLY A 635 ASP A 645 -1 N VAL A 641 O THR A 443 SHEET 4 G 4 VAL A 607 THR A 612 -1 N THR A 398 O THR A 644 SHEET 1 H 3 ILE A 595 VAL A 386 0 SHEET 2 H 3 SER A 626 GLY A 629 -1 O ILE A 627 N ILE A 595 SHEET 3 H 3 LEU A 618 ASP A 621 -1 N ASP A 621 O SER A 626 SHEET 1 I 2 THR A 666 VAL A 667 0 SHEET 2 I 2 THR A 688 GLN A 689 -1 O GLN A 689 N THR A 666 SHEET 1 J 4 GLN A 673 GLU A 676 0 SHEET 2 J 4 LYS A 739 THR A 749 1 O LYS A 745 N GLN A 673 SHEET 3 J 4 GLY A 724 THR A 733 -1 N SER A 726 O TYR A 746 SHEET 4 J 4 THR A 697 THR A 701 -1 N THR A 701 O SER A 729 SHEET 1 K 3 ILE A 684 LYS A 685 0 SHEET 2 K 3 THR A 505 GLY A 718 -1 O ILE A 716 N ILE A 684 SHEET 3 K 3 LEU A 707 ASP A 710 -1 N THR A 708 O SER A 717 LINK C1 GLC B 1 O2 FRU B 2 1555 1555 1.36 LINK OD2 ASP A 365 CA CA A 801 1555 1555 2.45 LINK OD1 ASP A 365 CA CA A 801 1555 1555 2.51 LINK O TYR A 367 CA CA A 801 1555 1555 2.32 LINK OD1 ASN A 369 CA CA A 801 1555 1555 2.33 LINK OD2 ASP A 382 CA CA A 801 1555 1555 2.37 LINK OD2 ASP A 573 CA CA A 802 1555 1555 2.38 LINK OD1 ASP A 573 CA CA A 802 1555 1555 2.51 LINK O LYS A 575 CA CA A 802 1555 1555 2.23 LINK OD1 ASP A 601 CA CA A 802 1555 1555 2.49 LINK OD2 ASP A 601 CA CA A 802 1555 1555 2.54 LINK OD1 ASN A 602 CA CA A 802 1555 1555 2.28 LINK OD2 ASP A 645 CA CA A 802 1555 1555 2.25 LINK OD1 ASP A 661 CA CA A 803 1555 1555 2.50 LINK OD2 ASP A 661 CA CA A 803 1555 1555 2.58 LINK O THR A 663 CA CA A 803 1555 1555 2.26 LINK OD2 ASP A 690 CA CA A 803 1555 1555 2.48 LINK OD1 ASP A 690 CA CA A 803 1555 1555 2.55 LINK OD1 ASN A 691 CA CA A 803 1555 1555 2.28 LINK OD2 ASP A 734 CA CA A 803 1555 1555 2.25 LINK CA CA A 801 O HOH A 901 1555 1555 2.37 LINK CA CA A 801 O HOH A 902 1555 1555 2.40 CISPEP 1 GLY A 329 ASP A 330 0 -2.81 CISPEP 2 PHE A 486 GLY A 487 0 4.77 CRYST1 118.018 118.018 136.407 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008473 0.004892 0.000000 0.00000 SCALE2 0.000000 0.009784 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007331 0.00000