HEADER LYASE 01-AUG-13 4M0D TITLE CRYSTAL STRUCTURE OF MURQ FROM H.INFLUENZAE IN APO FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: N-ACETYLMURAMIC ACID 6-PHOSPHATE ETHERASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: MURNAC-6-P ETHERASE, N-ACETYLMURAMIC ACID 6-PHOSPHATE COMPND 5 HYDROLASE, N-ACETYLMURAMIC ACID 6-PHOSPHATE LYASE; COMPND 6 EC: 4.2.1.126; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HAEMOPHILUS INFLUENZAE; SOURCE 3 ORGANISM_TAXID: 71421; SOURCE 4 STRAIN: RD KW20; SOURCE 5 GENE: MURQ; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NAD(P)/FAD- BINDING ROSSMANN FOLD, ALPHA-BETA-ALPHA SANDWICH, MURQ, KEYWDS 2 YFEU, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR S.HAZRA,J.BLANCHARD REVDAT 2 20-SEP-23 4M0D 1 REMARK REVDAT 1 26-FEB-14 4M0D 0 JRNL AUTH T.HADI,S.HAZRA,M.E.TANNER,J.S.BLANCHARD JRNL TITL STRUCTURE OF MURNAC 6-PHOSPHATE HYDROLASE (MURQ) FROM JRNL TITL 2 HAEMOPHILUS INFLUENZAE WITH A BOUND INHIBITOR. JRNL REF BIOCHEMISTRY V. 52 9358 2013 JRNL REFN ISSN 0006-2960 JRNL PMID 24251551 JRNL DOI 10.1021/BI4010446 REMARK 2 REMARK 2 RESOLUTION. 2.58 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.1_1168 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.58 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 32.56 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.110 REMARK 3 COMPLETENESS FOR RANGE (%) : 92.8 REMARK 3 NUMBER OF REFLECTIONS : 34265 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.286 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.840 REMARK 3 FREE R VALUE TEST SET COUNT : 2000 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 32.5660 - 6.1984 0.93 2464 154 0.1566 0.2386 REMARK 3 2 6.1984 - 4.9254 0.98 2491 153 0.1712 0.2456 REMARK 3 3 4.9254 - 4.3044 0.95 2366 147 0.1423 0.2390 REMARK 3 4 4.3044 - 3.9115 0.95 2398 148 0.1469 0.2514 REMARK 3 5 3.9115 - 3.6316 0.96 2347 146 0.1676 0.2763 REMARK 3 6 3.6316 - 3.4177 0.94 2364 147 0.1914 0.2824 REMARK 3 7 3.4177 - 3.2467 0.95 2352 145 0.2030 0.3473 REMARK 3 8 3.2467 - 3.1055 0.95 2323 144 0.2094 0.3458 REMARK 3 9 3.1055 - 2.9860 0.94 2306 144 0.2143 0.3398 REMARK 3 10 2.9860 - 2.8830 0.94 2299 142 0.2137 0.3251 REMARK 3 11 2.8830 - 2.7929 0.93 2256 139 0.2127 0.3128 REMARK 3 12 2.7929 - 2.7132 0.92 2257 141 0.2249 0.3349 REMARK 3 13 2.7132 - 2.6418 0.91 2220 137 0.2524 0.3597 REMARK 3 14 2.6418 - 2.5773 0.75 1822 113 0.2988 0.4116 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.420 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 30.380 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 8830 REMARK 3 ANGLE : 1.267 11955 REMARK 3 CHIRALITY : 0.082 1498 REMARK 3 PLANARITY : 0.005 1537 REMARK 3 DIHEDRAL : 15.788 3301 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4M0D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-AUG-13. REMARK 100 THE DEPOSITION ID IS D_1000081306. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 65.0 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34265 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.580 REMARK 200 RESOLUTION RANGE LOW (A) : 32.560 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 5.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.58 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 1NRI REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M NACL, 0.1 M BIS-TRIS:HCL, PH REMARK 280 5.5, 25% (W/V) PEG-3350, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 38.06350 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.25450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 55.82500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 67.25450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.06350 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 55.82500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8410 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -32.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21520 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 17890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 42080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -76.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 ASP A 3 REMARK 465 ILE A 4 REMARK 465 MET B 1 REMARK 465 ASN B 2 REMARK 465 ASP B 3 REMARK 465 ILE B 4 REMARK 465 ILE B 5 REMARK 465 LEU B 6 REMARK 465 LYS B 7 REMARK 465 SER B 8 REMARK 465 ALA B 300 REMARK 465 LEU B 301 REMARK 465 SER B 302 REMARK 465 LYS B 303 REMARK 465 MET C 1 REMARK 465 ASN C 2 REMARK 465 ASP C 3 REMARK 465 ILE C 4 REMARK 465 SER C 302 REMARK 465 LYS C 303 REMARK 465 MET D 1 REMARK 465 ASN D 2 REMARK 465 ASP D 3 REMARK 465 ILE D 4 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 27 CG CD OE1 NE2 REMARK 470 LYS A 256 CG CD CE NZ REMARK 470 LYS B 296 CG CD CE NZ REMARK 470 ASN B 299 CG OD1 ND2 REMARK 470 LYS C 287 CG CD CE NZ REMARK 470 ARG C 292 CG CD NE CZ NH1 NH2 REMARK 470 GLN C 294 CG CD OE1 NE2 REMARK 470 LEU D 278 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CB CYS A 110 SG CYS C 110 1.62 REMARK 500 O GLY C 77 O HOH C 450 1.78 REMARK 500 SG CYS B 110 CB CYS D 110 1.86 REMARK 500 O ALA C 87 O HOH C 445 1.86 REMARK 500 O GLU C 89 O HOH C 468 1.92 REMARK 500 O VAL D 231 O HOH D 412 2.01 REMARK 500 CB CYS B 110 SG CYS D 110 2.01 REMARK 500 N ARG C 81 O HOH C 450 2.04 REMARK 500 O HOH B 411 O HOH B 428 2.06 REMARK 500 O THR C 78 O HOH C 449 2.07 REMARK 500 N THR C 93 O HOH C 468 2.10 REMARK 500 O ASN C 212 OG1 THR C 216 2.14 REMARK 500 N CYS C 90 O HOH C 445 2.14 REMARK 500 OE2 GLU A 59 O HOH A 449 2.15 REMARK 500 O SER D 218 O HOH D 423 2.15 REMARK 500 NE ARG B 200 O HOH B 427 2.15 REMARK 500 OE2 GLU C 59 O HOH C 461 2.16 REMARK 500 N ASP D 232 O HOH D 433 2.17 REMARK 500 O HOH B 433 O HOH B 434 2.18 REMARK 500 OG1 THR C 150 O HOH C 462 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 6 -92.48 -164.50 REMARK 500 SER A 8 30.46 174.77 REMARK 500 ASN A 20 28.83 -72.44 REMARK 500 LEU A 201 -93.09 -81.72 REMARK 500 GLU A 227 -122.03 51.72 REMARK 500 ASP A 253 54.27 -57.46 REMARK 500 ASN A 255 120.10 -38.13 REMARK 500 LYS A 256 -48.63 176.86 REMARK 500 LEU A 264 59.92 -94.91 REMARK 500 ALA A 266 -117.50 -174.18 REMARK 500 GLN A 268 88.87 -44.03 REMARK 500 SER A 302 149.05 65.29 REMARK 500 SER B 10 122.29 178.80 REMARK 500 THR B 11 -4.18 74.46 REMARK 500 CYS B 110 23.05 -79.99 REMARK 500 ALA B 145 119.33 -160.74 REMARK 500 ARG B 149 12.91 -146.36 REMARK 500 LEU B 201 -105.74 -80.02 REMARK 500 LYS B 224 48.72 -83.29 REMARK 500 GLU B 227 -122.28 47.68 REMARK 500 ALA B 235 81.49 -64.12 REMARK 500 ASP B 253 44.61 -59.39 REMARK 500 LEU B 278 -76.31 -56.51 REMARK 500 SER B 279 -168.80 -65.10 REMARK 500 THR B 280 -157.45 -91.80 REMARK 500 SER B 284 -72.48 -57.52 REMARK 500 GLN B 294 56.29 27.67 REMARK 500 LYS C 7 78.29 -68.63 REMARK 500 GLU C 109 -33.32 -39.91 REMARK 500 HIS C 134 62.95 61.77 REMARK 500 LYS C 137 -48.70 -6.42 REMARK 500 LEU C 201 -93.99 -82.60 REMARK 500 LYS C 224 36.00 -78.33 REMARK 500 GLU C 227 -134.79 50.20 REMARK 500 ASN C 228 35.19 -98.29 REMARK 500 ALA C 235 89.36 -66.57 REMARK 500 ASP C 253 17.52 58.57 REMARK 500 THR C 257 -74.35 -59.89 REMARK 500 ALA C 259 -69.43 97.59 REMARK 500 THR C 280 55.21 73.24 REMARK 500 LEU C 281 -57.39 -126.09 REMARK 500 SER C 282 102.48 55.97 REMARK 500 LYS C 283 74.07 70.01 REMARK 500 SER C 284 -87.01 89.11 REMARK 500 LYS C 287 142.97 68.70 REMARK 500 VAL C 288 75.97 27.19 REMARK 500 LEU C 289 -92.32 140.57 REMARK 500 HIS C 293 46.86 -144.46 REMARK 500 SER D 8 -41.71 76.62 REMARK 500 SER D 21 32.88 -141.02 REMARK 500 REMARK 500 THIS ENTRY HAS 65 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 CYS A 254 ASN A 255 141.24 REMARK 500 SER C 136 LYS C 137 149.27 REMARK 500 GLU C 285 ALA C 286 148.29 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4LZJ RELATED DB: PDB REMARK 900 THIS IS THE STRUCTURE OF SAME PROTEIN IN LIGAND BOUND FORM (LIGAND REMARK 900 D-MURAMITOL 6 PHOSPHATE) DBREF 4M0D A 1 303 UNP P44862 MURQ_HAEIN 1 303 DBREF 4M0D B 1 303 UNP P44862 MURQ_HAEIN 1 303 DBREF 4M0D C 1 303 UNP P44862 MURQ_HAEIN 1 303 DBREF 4M0D D 1 303 UNP P44862 MURQ_HAEIN 1 303 SEQRES 1 A 303 MET ASN ASP ILE ILE LEU LYS SER LEU SER THR LEU ILE SEQRES 2 A 303 THR GLU GLN ARG ASN PRO ASN SER VAL ASP ILE ASP ARG SEQRES 3 A 303 GLN SER THR LEU GLU ILE VAL ARG LEU MET ASN GLU GLU SEQRES 4 A 303 ASP LYS LEU VAL PRO LEU ALA ILE GLU SER CYS LEU PRO SEQRES 5 A 303 GLN ILE SER LEU ALA VAL GLU GLN ILE VAL GLN ALA PHE SEQRES 6 A 303 GLN GLN GLY GLY ARG LEU ILE TYR ILE GLY ALA GLY THR SEQRES 7 A 303 SER GLY ARG LEU GLY VAL LEU ASP ALA SER GLU CYS PRO SEQRES 8 A 303 PRO THR PHE GLY VAL SER THR GLU MET VAL LYS GLY ILE SEQRES 9 A 303 ILE ALA GLY GLY GLU CYS ALA ILE ARG HIS PRO VAL GLU SEQRES 10 A 303 GLY ALA GLU ASP ASN THR LYS ALA VAL LEU ASN ASP LEU SEQRES 11 A 303 GLN SER ILE HIS PHE SER LYS ASN ASP VAL LEU VAL GLY SEQRES 12 A 303 ILE ALA ALA SER GLY ARG THR PRO TYR VAL ILE ALA GLY SEQRES 13 A 303 LEU GLN TYR ALA LYS SER LEU GLY ALA LEU THR ILE SER SEQRES 14 A 303 ILE ALA SER ASN PRO LYS SER GLU MET ALA GLU ILE ALA SEQRES 15 A 303 ASP ILE ALA ILE GLU THR ILE VAL GLY PRO GLU ILE LEU SEQRES 16 A 303 THR GLY SER SER ARG LEU LYS SER GLY THR ALA GLN LYS SEQRES 17 A 303 MET VAL LEU ASN MET LEU THR THR ALA SER MET ILE LEU SEQRES 18 A 303 LEU GLY LYS CYS TYR GLU ASN LEU MET VAL ASP VAL GLN SEQRES 19 A 303 ALA SER ASN GLU LYS LEU LYS ALA ARG ALA VAL ARG ILE SEQRES 20 A 303 VAL MET GLN ALA THR ASP CYS ASN LYS THR LEU ALA GLU SEQRES 21 A 303 GLN THR LEU LEU GLU ALA ASP GLN ASN ALA LYS LEU ALA SEQRES 22 A 303 ILE MET MET ILE LEU SER THR LEU SER LYS SER GLU ALA SEQRES 23 A 303 LYS VAL LEU LEU GLU ARG HIS GLN GLY LYS LEU ARG ASN SEQRES 24 A 303 ALA LEU SER LYS SEQRES 1 B 303 MET ASN ASP ILE ILE LEU LYS SER LEU SER THR LEU ILE SEQRES 2 B 303 THR GLU GLN ARG ASN PRO ASN SER VAL ASP ILE ASP ARG SEQRES 3 B 303 GLN SER THR LEU GLU ILE VAL ARG LEU MET ASN GLU GLU SEQRES 4 B 303 ASP LYS LEU VAL PRO LEU ALA ILE GLU SER CYS LEU PRO SEQRES 5 B 303 GLN ILE SER LEU ALA VAL GLU GLN ILE VAL GLN ALA PHE SEQRES 6 B 303 GLN GLN GLY GLY ARG LEU ILE TYR ILE GLY ALA GLY THR SEQRES 7 B 303 SER GLY ARG LEU GLY VAL LEU ASP ALA SER GLU CYS PRO SEQRES 8 B 303 PRO THR PHE GLY VAL SER THR GLU MET VAL LYS GLY ILE SEQRES 9 B 303 ILE ALA GLY GLY GLU CYS ALA ILE ARG HIS PRO VAL GLU SEQRES 10 B 303 GLY ALA GLU ASP ASN THR LYS ALA VAL LEU ASN ASP LEU SEQRES 11 B 303 GLN SER ILE HIS PHE SER LYS ASN ASP VAL LEU VAL GLY SEQRES 12 B 303 ILE ALA ALA SER GLY ARG THR PRO TYR VAL ILE ALA GLY SEQRES 13 B 303 LEU GLN TYR ALA LYS SER LEU GLY ALA LEU THR ILE SER SEQRES 14 B 303 ILE ALA SER ASN PRO LYS SER GLU MET ALA GLU ILE ALA SEQRES 15 B 303 ASP ILE ALA ILE GLU THR ILE VAL GLY PRO GLU ILE LEU SEQRES 16 B 303 THR GLY SER SER ARG LEU LYS SER GLY THR ALA GLN LYS SEQRES 17 B 303 MET VAL LEU ASN MET LEU THR THR ALA SER MET ILE LEU SEQRES 18 B 303 LEU GLY LYS CYS TYR GLU ASN LEU MET VAL ASP VAL GLN SEQRES 19 B 303 ALA SER ASN GLU LYS LEU LYS ALA ARG ALA VAL ARG ILE SEQRES 20 B 303 VAL MET GLN ALA THR ASP CYS ASN LYS THR LEU ALA GLU SEQRES 21 B 303 GLN THR LEU LEU GLU ALA ASP GLN ASN ALA LYS LEU ALA SEQRES 22 B 303 ILE MET MET ILE LEU SER THR LEU SER LYS SER GLU ALA SEQRES 23 B 303 LYS VAL LEU LEU GLU ARG HIS GLN GLY LYS LEU ARG ASN SEQRES 24 B 303 ALA LEU SER LYS SEQRES 1 C 303 MET ASN ASP ILE ILE LEU LYS SER LEU SER THR LEU ILE SEQRES 2 C 303 THR GLU GLN ARG ASN PRO ASN SER VAL ASP ILE ASP ARG SEQRES 3 C 303 GLN SER THR LEU GLU ILE VAL ARG LEU MET ASN GLU GLU SEQRES 4 C 303 ASP LYS LEU VAL PRO LEU ALA ILE GLU SER CYS LEU PRO SEQRES 5 C 303 GLN ILE SER LEU ALA VAL GLU GLN ILE VAL GLN ALA PHE SEQRES 6 C 303 GLN GLN GLY GLY ARG LEU ILE TYR ILE GLY ALA GLY THR SEQRES 7 C 303 SER GLY ARG LEU GLY VAL LEU ASP ALA SER GLU CYS PRO SEQRES 8 C 303 PRO THR PHE GLY VAL SER THR GLU MET VAL LYS GLY ILE SEQRES 9 C 303 ILE ALA GLY GLY GLU CYS ALA ILE ARG HIS PRO VAL GLU SEQRES 10 C 303 GLY ALA GLU ASP ASN THR LYS ALA VAL LEU ASN ASP LEU SEQRES 11 C 303 GLN SER ILE HIS PHE SER LYS ASN ASP VAL LEU VAL GLY SEQRES 12 C 303 ILE ALA ALA SER GLY ARG THR PRO TYR VAL ILE ALA GLY SEQRES 13 C 303 LEU GLN TYR ALA LYS SER LEU GLY ALA LEU THR ILE SER SEQRES 14 C 303 ILE ALA SER ASN PRO LYS SER GLU MET ALA GLU ILE ALA SEQRES 15 C 303 ASP ILE ALA ILE GLU THR ILE VAL GLY PRO GLU ILE LEU SEQRES 16 C 303 THR GLY SER SER ARG LEU LYS SER GLY THR ALA GLN LYS SEQRES 17 C 303 MET VAL LEU ASN MET LEU THR THR ALA SER MET ILE LEU SEQRES 18 C 303 LEU GLY LYS CYS TYR GLU ASN LEU MET VAL ASP VAL GLN SEQRES 19 C 303 ALA SER ASN GLU LYS LEU LYS ALA ARG ALA VAL ARG ILE SEQRES 20 C 303 VAL MET GLN ALA THR ASP CYS ASN LYS THR LEU ALA GLU SEQRES 21 C 303 GLN THR LEU LEU GLU ALA ASP GLN ASN ALA LYS LEU ALA SEQRES 22 C 303 ILE MET MET ILE LEU SER THR LEU SER LYS SER GLU ALA SEQRES 23 C 303 LYS VAL LEU LEU GLU ARG HIS GLN GLY LYS LEU ARG ASN SEQRES 24 C 303 ALA LEU SER LYS SEQRES 1 D 303 MET ASN ASP ILE ILE LEU LYS SER LEU SER THR LEU ILE SEQRES 2 D 303 THR GLU GLN ARG ASN PRO ASN SER VAL ASP ILE ASP ARG SEQRES 3 D 303 GLN SER THR LEU GLU ILE VAL ARG LEU MET ASN GLU GLU SEQRES 4 D 303 ASP LYS LEU VAL PRO LEU ALA ILE GLU SER CYS LEU PRO SEQRES 5 D 303 GLN ILE SER LEU ALA VAL GLU GLN ILE VAL GLN ALA PHE SEQRES 6 D 303 GLN GLN GLY GLY ARG LEU ILE TYR ILE GLY ALA GLY THR SEQRES 7 D 303 SER GLY ARG LEU GLY VAL LEU ASP ALA SER GLU CYS PRO SEQRES 8 D 303 PRO THR PHE GLY VAL SER THR GLU MET VAL LYS GLY ILE SEQRES 9 D 303 ILE ALA GLY GLY GLU CYS ALA ILE ARG HIS PRO VAL GLU SEQRES 10 D 303 GLY ALA GLU ASP ASN THR LYS ALA VAL LEU ASN ASP LEU SEQRES 11 D 303 GLN SER ILE HIS PHE SER LYS ASN ASP VAL LEU VAL GLY SEQRES 12 D 303 ILE ALA ALA SER GLY ARG THR PRO TYR VAL ILE ALA GLY SEQRES 13 D 303 LEU GLN TYR ALA LYS SER LEU GLY ALA LEU THR ILE SER SEQRES 14 D 303 ILE ALA SER ASN PRO LYS SER GLU MET ALA GLU ILE ALA SEQRES 15 D 303 ASP ILE ALA ILE GLU THR ILE VAL GLY PRO GLU ILE LEU SEQRES 16 D 303 THR GLY SER SER ARG LEU LYS SER GLY THR ALA GLN LYS SEQRES 17 D 303 MET VAL LEU ASN MET LEU THR THR ALA SER MET ILE LEU SEQRES 18 D 303 LEU GLY LYS CYS TYR GLU ASN LEU MET VAL ASP VAL GLN SEQRES 19 D 303 ALA SER ASN GLU LYS LEU LYS ALA ARG ALA VAL ARG ILE SEQRES 20 D 303 VAL MET GLN ALA THR ASP CYS ASN LYS THR LEU ALA GLU SEQRES 21 D 303 GLN THR LEU LEU GLU ALA ASP GLN ASN ALA LYS LEU ALA SEQRES 22 D 303 ILE MET MET ILE LEU SER THR LEU SER LYS SER GLU ALA SEQRES 23 D 303 LYS VAL LEU LEU GLU ARG HIS GLN GLY LYS LEU ARG ASN SEQRES 24 D 303 ALA LEU SER LYS FORMUL 5 HOH *283(H2 O) HELIX 1 1 SER A 8 GLN A 16 5 9 HELIX 2 2 ASN A 18 VAL A 22 5 5 HELIX 3 3 SER A 28 LYS A 41 1 14 HELIX 4 4 LYS A 41 SER A 49 1 9 HELIX 5 5 CYS A 50 GLN A 67 1 18 HELIX 6 6 ALA A 76 GLY A 95 1 20 HELIX 7 7 GLU A 109 HIS A 114 1 6 HELIX 8 8 ASN A 122 ILE A 133 1 12 HELIX 9 9 THR A 150 LEU A 163 1 14 HELIX 10 10 SER A 176 ALA A 182 1 7 HELIX 11 11 LYS A 202 LEU A 222 1 21 HELIX 12 12 ASN A 237 THR A 252 1 16 HELIX 13 13 THR A 257 LEU A 264 1 8 HELIX 14 14 ASN A 269 SER A 279 1 11 HELIX 15 15 SER A 282 HIS A 293 1 12 HELIX 16 16 LYS A 296 LEU A 301 1 6 HELIX 17 17 LEU B 12 GLN B 16 5 5 HELIX 18 18 ASN B 18 VAL B 22 5 5 HELIX 19 19 ASP B 23 GLN B 27 5 5 HELIX 20 20 SER B 28 GLU B 48 1 21 HELIX 21 21 CYS B 50 GLN B 67 1 18 HELIX 22 22 ALA B 76 GLU B 89 1 14 HELIX 23 23 GLU B 89 GLY B 95 1 7 HELIX 24 24 GLY B 108 ILE B 112 5 5 HELIX 25 25 ASN B 122 ILE B 133 1 12 HELIX 26 26 THR B 150 LEU B 163 1 14 HELIX 27 27 SER B 176 ALA B 182 1 7 HELIX 28 28 LEU B 201 LEU B 222 1 22 HELIX 29 29 ASN B 237 THR B 252 1 16 HELIX 30 30 ASN B 255 ALA B 266 1 12 HELIX 31 31 ASN B 269 SER B 279 1 11 HELIX 32 32 SER B 282 ARG B 292 1 11 HELIX 33 33 SER C 8 GLN C 16 5 9 HELIX 34 34 ASN C 18 VAL C 22 5 5 HELIX 35 35 SER C 28 LEU C 42 1 15 HELIX 36 36 LEU C 42 GLN C 66 1 25 HELIX 37 37 ALA C 76 GLU C 89 1 14 HELIX 38 38 CYS C 90 GLY C 95 1 6 HELIX 39 39 GLU C 109 HIS C 114 1 6 HELIX 40 40 GLY C 118 ASP C 121 5 4 HELIX 41 41 ASN C 122 ILE C 133 1 12 HELIX 42 42 THR C 150 LEU C 163 1 14 HELIX 43 43 SER C 176 ALA C 182 1 7 HELIX 44 44 LEU C 201 LEU C 222 1 22 HELIX 45 45 ASN C 237 ASP C 253 1 17 HELIX 46 46 LYS C 256 ALA C 266 1 11 HELIX 47 47 ASN C 269 THR C 280 1 12 HELIX 48 48 ASN D 18 VAL D 22 5 5 HELIX 49 49 ASP D 23 GLN D 27 5 5 HELIX 50 50 SER D 28 SER D 49 1 22 HELIX 51 51 CYS D 50 GLN D 67 1 18 HELIX 52 52 ALA D 76 GLY D 95 1 20 HELIX 53 53 GLY D 118 ASN D 122 5 5 HELIX 54 54 ALA D 125 ILE D 133 1 9 HELIX 55 55 THR D 150 SER D 162 1 13 HELIX 56 56 SER D 176 ALA D 182 1 7 HELIX 57 57 LEU D 201 LEU D 222 1 22 HELIX 58 58 ASN D 237 ASP D 253 1 17 HELIX 59 59 ASN D 255 ALA D 266 1 12 HELIX 60 60 ASN D 269 SER D 279 1 11 HELIX 61 61 SER D 282 HIS D 293 1 12 SHEET 1 A 5 VAL A 101 ILE A 105 0 SHEET 2 A 5 LEU A 71 GLY A 75 1 N TYR A 73 O ILE A 104 SHEET 3 A 5 VAL A 140 ILE A 144 1 O VAL A 140 N ILE A 72 SHEET 4 A 5 LEU A 166 ALA A 171 1 O ILE A 168 N GLY A 143 SHEET 5 A 5 ILE A 184 GLU A 187 1 O ILE A 186 N SER A 169 SHEET 1 B 5 VAL B 101 ILE B 105 0 SHEET 2 B 5 LEU B 71 GLY B 75 1 N TYR B 73 O ILE B 104 SHEET 3 B 5 VAL B 140 ILE B 144 1 O ILE B 144 N ILE B 74 SHEET 4 B 5 THR B 167 ALA B 171 1 O ILE B 168 N LEU B 141 SHEET 5 B 5 ILE B 184 GLU B 187 1 O ILE B 186 N SER B 169 SHEET 1 C 5 VAL C 101 ILE C 105 0 SHEET 2 C 5 LEU C 71 GLY C 75 1 N TYR C 73 O ILE C 104 SHEET 3 C 5 VAL C 140 ILE C 144 1 O VAL C 142 N ILE C 72 SHEET 4 C 5 LEU C 166 ALA C 171 1 O ILE C 168 N GLY C 143 SHEET 5 C 5 ILE C 184 GLU C 187 1 O ILE C 186 N SER C 169 SHEET 1 D 5 VAL D 101 ILE D 105 0 SHEET 2 D 5 LEU D 71 GLY D 75 1 N LEU D 71 O LYS D 102 SHEET 3 D 5 VAL D 140 ILE D 144 1 O VAL D 142 N ILE D 72 SHEET 4 D 5 LEU D 166 ALA D 171 1 O ILE D 168 N GLY D 143 SHEET 5 D 5 ILE D 184 GLU D 187 1 O ILE D 186 N SER D 169 SSBOND 1 CYS A 110 CYS C 110 1555 1555 2.03 SSBOND 2 CYS B 110 CYS D 110 1555 1555 2.03 CISPEP 1 ASN A 255 LYS A 256 0 -3.71 CISPEP 2 SER B 10 THR B 11 0 5.03 CISPEP 3 LEU B 281 SER B 282 0 1.58 CISPEP 4 LEU B 297 ARG B 298 0 20.47 CISPEP 5 LYS C 283 SER C 284 0 -7.93 CISPEP 6 ALA C 286 LYS C 287 0 19.46 CISPEP 7 LYS C 287 VAL C 288 0 -4.38 CISPEP 8 GLU C 291 ARG C 292 0 -3.23 CISPEP 9 LYS D 7 SER D 8 0 -6.32 CRYST1 76.127 111.650 134.509 90.00 90.00 90.00 P 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013136 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008957 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007434 0.00000