HEADER SIGNALING PROTEIN 01-AUG-13 4M0H TITLE CRYSTAL STRUCTURE OF A PUTATIVE ANTI-SIGMA FACTOR (BDI_1681) FROM TITLE 2 PARABACTEROIDES DISTASONIS ATCC 8503 AT 2.50 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: CONSERVED HYPOTHETICAL PROTEIN, PUTATIVE ANTI-SIGMA FACTOR; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 107-337; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PARABACTEROIDES DISTASONIS; SOURCE 3 ORGANISM_TAXID: 435591; SOURCE 4 STRAIN: ATCC 8503; SOURCE 5 GENE: BDI_1681; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: PB1; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS FECR PROTEIN, PF04773 FAMILY, STRUCTURAL GENOMICS, JOINT CENTER FOR KEYWDS 2 STRUCTURAL GENOMICS, JCSG, PROTEIN STRUCTURE INITIATIVE, PSI- KEYWDS 3 BIOLOGY, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 01-FEB-23 4M0H 1 REMARK SEQADV LINK REVDAT 4 24-JAN-18 4M0H 1 JRNL REVDAT 3 15-NOV-17 4M0H 1 REMARK REVDAT 2 24-DEC-14 4M0H 1 TITLE REVDAT 1 16-OCT-13 4M0H 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF A CONSERVED HYPOTHETICAL PROTEIN, JRNL TITL 2 PUTATIVE ANTI-SIGMA FACTOR (BDI_1681) FROM PARABACTEROIDES JRNL TITL 3 DISTASONIS ATCC 8503 AT 2.50 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : BUSTER-TNT 2.10.0 REMARK 3 AUTHORS : BRICOGNE,BLANC,BRANDL,FLENSBURG,KELLER, REMARK 3 : PACIOREK,ROVERSI,SMART,VONRHEIN,WOMACK, REMARK 3 : MATTHEWS,TEN EYCK,TRONRUD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.45 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 20384 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.192 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.222 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.110 REMARK 3 FREE R VALUE TEST SET COUNT : 1042 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (ANGSTROMS) : 2.63 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.61 REMARK 3 REFLECTIONS IN BIN (WORKING + TEST SET) : 2921 REMARK 3 BIN R VALUE (WORKING + TEST SET) : 0.2156 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2766 REMARK 3 BIN R VALUE (WORKING SET) : 0.2127 REMARK 3 BIN FREE R VALUE : 0.2671 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.31 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 155 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3413 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 7 REMARK 3 SOLVENT ATOMS : 91 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 46.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.56960 REMARK 3 B22 (A**2) : -1.56960 REMARK 3 B33 (A**2) : 3.13910 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.304 REMARK 3 DPI (BLOW EQ-10) BASED ON R VALUE (A) : NULL REMARK 3 DPI (BLOW EQ-9) BASED ON FREE R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON R VALUE (A) : NULL REMARK 3 DPI (CRUICKSHANK) BASED ON FREE R VALUE (A) : NULL REMARK 3 REMARK 3 REFERENCES: BLOW, D. (2002) ACTA CRYST D58, 792-797 REMARK 3 CRUICKSHANK, D.W.J. (1999) ACTA CRYST D55, 583-601 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.939 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.924 REMARK 3 REMARK 3 NUMBER OF GEOMETRIC FUNCTION TERMS DEFINED : 15 REMARK 3 TERM COUNT WEIGHT FUNCTION. REMARK 3 BOND LENGTHS : 3492 ; 2.000 ; HARMONIC REMARK 3 BOND ANGLES : 4731 ; 2.000 ; HARMONIC REMARK 3 TORSION ANGLES : 1657 ; 6.000 ; SINUSOIDAL REMARK 3 TRIGONAL CARBON PLANES : 107 ; 2.000 ; HARMONIC REMARK 3 GENERAL PLANES : 498 ; 5.000 ; HARMONIC REMARK 3 ISOTROPIC THERMAL FACTORS : 3492 ; 20.000 ; HARMONIC REMARK 3 BAD NON-BONDED CONTACTS : NULL ; NULL ; NULL REMARK 3 IMPROPER TORSIONS : NULL ; NULL ; NULL REMARK 3 PSEUDOROTATION ANGLES : NULL ; NULL ; NULL REMARK 3 CHIRAL IMPROPER TORSION : 455 ; 5.000 ; SEMIHARMONIC REMARK 3 SUM OF OCCUPANCIES : NULL ; NULL ; NULL REMARK 3 UTILITY DISTANCES : NULL ; NULL ; NULL REMARK 3 UTILITY ANGLES : NULL ; NULL ; NULL REMARK 3 UTILITY TORSION : NULL ; NULL ; NULL REMARK 3 IDEAL-DIST CONTACT TERM : 3888 ; 4.000 ; SEMIHARMONIC REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.22 REMARK 3 PEPTIDE OMEGA TORSION ANGLES (DEGREES) : 4.07 REMARK 3 OTHER TORSION ANGLES (DEGREES) : 2.57 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: { A|121-336 } REMARK 3 ORIGIN FOR THE GROUP (A): 41.3792 19.8560 45.8612 REMARK 3 T TENSOR REMARK 3 T11: -0.0441 T22: -0.0839 REMARK 3 T33: -0.0470 T12: 0.0085 REMARK 3 T13: 0.0237 T23: -0.0003 REMARK 3 L TENSOR REMARK 3 L11: 0.8461 L22: 0.5409 REMARK 3 L33: 1.0211 L12: 0.0461 REMARK 3 L13: -0.2114 L23: -0.1579 REMARK 3 S TENSOR REMARK 3 S11: 0.0452 S12: 0.0020 S13: 0.0686 REMARK 3 S21: -0.0098 S22: 0.0401 S23: 0.0238 REMARK 3 S31: -0.0601 S32: 0.0261 S33: -0.0854 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: { B|124-336 } REMARK 3 ORIGIN FOR THE GROUP (A): 49.7978 -15.9981 46.5586 REMARK 3 T TENSOR REMARK 3 T11: -0.0752 T22: -0.1928 REMARK 3 T33: -0.0594 T12: 0.0458 REMARK 3 T13: -0.0487 T23: -0.0576 REMARK 3 L TENSOR REMARK 3 L11: 1.7762 L22: 2.1906 REMARK 3 L33: 2.0751 L12: 0.3487 REMARK 3 L13: -1.0233 L23: -0.4101 REMARK 3 S TENSOR REMARK 3 S11: -0.0722 S12: 0.0689 S13: -0.2278 REMARK 3 S21: -0.1156 S22: -0.0783 S23: 0.0324 REMARK 3 S31: 0.3379 S32: 0.0686 S33: 0.1505 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. A MET-INHIBITION PROTOCOL WAS USED REMARK 3 FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. REMARK 3 THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 2. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B REMARK 3 FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U REMARK 3 FACTORS. 3. THE MAD PHASES WERE USED AS RESTRAINTS DURING REMARK 3 REFINEMENT. 4. NCS RESTRAINTS WERE APPLIED USING BUSTER'S LSSR REMARK 3 RESTRAINT REPRESENTATION (-AUTONCS). 5.CHLORIDE IONS (CL) FROM REMARK 3 THE CRYSTALLIZATION AND GLYCEROL USED AS A CRYOPROTECTANT WERE REMARK 3 MODELED INTO THE STRUCTURE. REMARK 4 REMARK 4 4M0H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-AUG-13. REMARK 100 THE DEPOSITION ID IS D_1000081310. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 08-DEC-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.91837, 0.97963, 0.9791 REMARK 200 MONOCHROMATOR : SINGLE CRYSTAL SI(111) BENT REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING); REMARK 200 SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HORIZONTAL REMARK 200 FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 20436 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 29.449 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.11000 REMARK 200 FOR THE DATA SET : 11.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.56 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.10 REMARK 200 R MERGE FOR SHELL (I) : 0.83400 REMARK 200 R SYM FOR SHELL (I) : 0.83400 REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHARP, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 4.300M SODIUM CHLORIDE, 0.1M HEPES PH REMARK 280 7.5, NANODROP, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 65.95000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 46.28000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 46.28000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 32.97500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 46.28000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 46.28000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 98.92500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 46.28000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 46.28000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 32.97500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 46.28000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 46.28000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 98.92500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 65.95000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 LYS A 107 REMARK 465 LEU A 108 REMARK 465 TYR A 109 REMARK 465 LEU A 110 REMARK 465 ASN A 111 REMARK 465 HIS A 112 REMARK 465 SER A 113 REMARK 465 ALA A 114 REMARK 465 LYS A 115 REMARK 465 GLN A 116 REMARK 465 HIS A 117 REMARK 465 THR A 118 REMARK 465 SER A 119 REMARK 465 ALA A 120 REMARK 465 HIS A 337 REMARK 465 GLY B 0 REMARK 465 LYS B 107 REMARK 465 LEU B 108 REMARK 465 TYR B 109 REMARK 465 LEU B 110 REMARK 465 ASN B 111 REMARK 465 HIS B 112 REMARK 465 SER B 113 REMARK 465 ALA B 114 REMARK 465 LYS B 115 REMARK 465 GLN B 116 REMARK 465 HIS B 117 REMARK 465 THR B 118 REMARK 465 SER B 119 REMARK 465 ALA B 120 REMARK 465 SER B 121 REMARK 465 ASP B 122 REMARK 465 HIS B 123 REMARK 465 HIS B 337 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 190 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 207 CD OE1 NE2 REMARK 470 ARG B 190 CG CD NE CZ NH1 NH2 REMARK 470 GLN B 207 CG CD OE1 NE2 REMARK 470 ARG B 324 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 122 139.03 -178.24 REMARK 500 THR A 243 -82.07 -72.81 REMARK 500 ASN A 305 109.18 -57.12 REMARK 500 GLU A 327 -118.50 65.19 REMARK 500 SER B 162 -169.51 -78.26 REMARK 500 ASP B 180 88.76 -150.23 REMARK 500 THR B 243 -81.27 -72.42 REMARK 500 ASN B 305 109.03 -58.28 REMARK 500 GLU B 327 -107.21 54.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: JCSG-416485 RELATED DB: TARGETTRACK REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT (RESIDUES 107-337) WAS EXPRESSED WITH AN N-TERMINAL REMARK 999 PURIFICATION TAG MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV REMARK 999 PROTEASE LEAVING ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. REMARK 999 THE THR AT POSITION 199 OF THE CONSTRUCT WAS MUTATED TO GLY. DBREF 4M0H A 107 337 UNP A6LCL9 A6LCL9_PARD8 107 337 DBREF 4M0H B 107 337 UNP A6LCL9 A6LCL9_PARD8 107 337 SEQADV 4M0H GLY A 0 UNP A6LCL9 EXPRESSION TAG SEQADV 4M0H GLY A 199 UNP A6LCL9 THR 199 ENGINEERED MUTATION SEQADV 4M0H GLY B 0 UNP A6LCL9 EXPRESSION TAG SEQADV 4M0H GLY B 199 UNP A6LCL9 THR 199 ENGINEERED MUTATION SEQRES 1 A 232 GLY LYS LEU TYR LEU ASN HIS SER ALA LYS GLN HIS THR SEQRES 2 A 232 SER ALA SER ASP HIS LEU LEU THR GLU ILE SER VAL ASN SEQRES 3 A 232 HIS GLY GLU HIS LYS GLN VAL THR LEU PRO ASP GLY THR SEQRES 4 A 232 VAL VAL HIS LEU ASN ALA GLY THR VAL MSE ARG TYR PRO SEQRES 5 A 232 THR GLU PHE THR SER ASP ILE ARG LEU VAL GLU MSE GLU SEQRES 6 A 232 GLY GLU ALA PHE PHE ASN VAL MSE ARG ASP GLU GLY LYS SEQRES 7 A 232 PRO PHE ILE VAL ARG THR ARG GLN ALA ASP VAL LYS VAL SEQRES 8 A 232 LEU GLY GLY SER PHE ASN VAL LYS ALA TYR GLN GLU ASP SEQRES 9 A 232 GLU LEU MSE ALA VAL SER VAL ARG THR GLY LYS VAL GLU SEQRES 10 A 232 VAL ASP MSE PRO GLU SER VAL MSE ARG LEU LEU PRO ASN SEQRES 11 A 232 GLU GLN ILE ILE VAL ASN ASN THR ASN GLY GLU ILE LEU SEQRES 12 A 232 LYS LYS ASN GLU ASP ALA GLN LYS VAL THR ALA TRP LEU SEQRES 13 A 232 GLN GLY GLY LEU TYR PHE ASN ARG THR PRO ILE SER SER SEQRES 14 A 232 VAL ILE HIS ASP LEU GLU ARG MSE TYR ASN GLN GLU ILE SEQRES 15 A 232 VAL LEU ASP PRO ASN VAL VAL PHE ASP ASP TYR ILE TYR SEQRES 16 A 232 GLY GLU HIS ASP ASN LYS SER LEU GLU ALA VAL LEU ASN SEQRES 17 A 232 ALA ILE GLN TYR SER THR GLY ILE ARG TYR ARG LYS GLU SEQRES 18 A 232 GLU SER ARG ILE VAL LEU TYR LYS THR SER HIS SEQRES 1 B 232 GLY LYS LEU TYR LEU ASN HIS SER ALA LYS GLN HIS THR SEQRES 2 B 232 SER ALA SER ASP HIS LEU LEU THR GLU ILE SER VAL ASN SEQRES 3 B 232 HIS GLY GLU HIS LYS GLN VAL THR LEU PRO ASP GLY THR SEQRES 4 B 232 VAL VAL HIS LEU ASN ALA GLY THR VAL MSE ARG TYR PRO SEQRES 5 B 232 THR GLU PHE THR SER ASP ILE ARG LEU VAL GLU MSE GLU SEQRES 6 B 232 GLY GLU ALA PHE PHE ASN VAL MSE ARG ASP GLU GLY LYS SEQRES 7 B 232 PRO PHE ILE VAL ARG THR ARG GLN ALA ASP VAL LYS VAL SEQRES 8 B 232 LEU GLY GLY SER PHE ASN VAL LYS ALA TYR GLN GLU ASP SEQRES 9 B 232 GLU LEU MSE ALA VAL SER VAL ARG THR GLY LYS VAL GLU SEQRES 10 B 232 VAL ASP MSE PRO GLU SER VAL MSE ARG LEU LEU PRO ASN SEQRES 11 B 232 GLU GLN ILE ILE VAL ASN ASN THR ASN GLY GLU ILE LEU SEQRES 12 B 232 LYS LYS ASN GLU ASP ALA GLN LYS VAL THR ALA TRP LEU SEQRES 13 B 232 GLN GLY GLY LEU TYR PHE ASN ARG THR PRO ILE SER SER SEQRES 14 B 232 VAL ILE HIS ASP LEU GLU ARG MSE TYR ASN GLN GLU ILE SEQRES 15 B 232 VAL LEU ASP PRO ASN VAL VAL PHE ASP ASP TYR ILE TYR SEQRES 16 B 232 GLY GLU HIS ASP ASN LYS SER LEU GLU ALA VAL LEU ASN SEQRES 17 B 232 ALA ILE GLN TYR SER THR GLY ILE ARG TYR ARG LYS GLU SEQRES 18 B 232 GLU SER ARG ILE VAL LEU TYR LYS THR SER HIS MODRES 4M0H MSE A 154 MET SELENOMETHIONINE MODRES 4M0H MSE A 169 MET SELENOMETHIONINE MODRES 4M0H MSE A 178 MET SELENOMETHIONINE MODRES 4M0H MSE A 212 MET SELENOMETHIONINE MODRES 4M0H MSE A 225 MET SELENOMETHIONINE MODRES 4M0H MSE A 230 MET SELENOMETHIONINE MODRES 4M0H MSE A 282 MET SELENOMETHIONINE MODRES 4M0H MSE B 154 MET SELENOMETHIONINE MODRES 4M0H MSE B 169 MET SELENOMETHIONINE MODRES 4M0H MSE B 178 MET SELENOMETHIONINE MODRES 4M0H MSE B 212 MET SELENOMETHIONINE MODRES 4M0H MSE B 225 MET SELENOMETHIONINE MODRES 4M0H MSE B 230 MET SELENOMETHIONINE MODRES 4M0H MSE B 282 MET SELENOMETHIONINE HET MSE A 154 8 HET MSE A 169 8 HET MSE A 178 8 HET MSE A 212 8 HET MSE A 225 8 HET MSE A 230 8 HET MSE A 282 8 HET MSE B 154 8 HET MSE B 169 8 HET MSE B 178 13 HET MSE B 212 8 HET MSE B 225 8 HET MSE B 230 8 HET MSE B 282 8 HET GOL A 401 6 HET CL A 402 1 HETNAM MSE SELENOMETHIONINE HETNAM GOL GLYCEROL HETNAM CL CHLORIDE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 14(C5 H11 N O2 SE) FORMUL 3 GOL C3 H8 O3 FORMUL 4 CL CL 1- FORMUL 5 HOH *91(H2 O) HELIX 1 1 ASP A 253 THR A 258 1 6 HELIX 2 2 ALA A 259 GLY A 263 5 5 HELIX 3 3 ILE A 272 ASN A 284 1 13 HELIX 4 4 SER A 307 GLY A 320 1 14 HELIX 5 5 ASP B 253 THR B 258 1 6 HELIX 6 6 ALA B 259 GLY B 263 5 5 HELIX 7 7 ILE B 272 ASN B 284 1 13 HELIX 8 8 SER B 307 GLY B 320 1 14 SHEET 1 A 8 LEU A 125 SER A 129 0 SHEET 2 A 8 VAL A 153 PRO A 157 -1 O MSE A 154 N ILE A 128 SHEET 3 A 8 ARG A 165 VAL A 177 -1 O GLU A 170 N VAL A 153 SHEET 4 A 8 PHE A 185 ARG A 188 1 O ILE A 186 N ARG A 165 SHEET 5 A 8 ASP A 193 VAL A 196 -1 O VAL A 196 N PHE A 185 SHEET 6 A 8 VAL A 221 MSE A 225 -1 O ASP A 224 N ASP A 193 SHEET 7 A 8 SER A 228 LEU A 232 -1 O LEU A 232 N VAL A 221 SHEET 8 A 8 SER B 228 LEU B 232 -1 O VAL B 229 N VAL A 229 SHEET 1 B 7 SER B 228 LEU B 232 0 SHEET 2 B 7 VAL B 221 ASP B 224 -1 N VAL B 221 O LEU B 232 SHEET 3 B 7 ASP B 193 VAL B 196 -1 N ASP B 193 O ASP B 224 SHEET 4 B 7 PHE B 185 ARG B 188 -1 N PHE B 185 O VAL B 196 SHEET 5 B 7 ARG B 165 VAL B 177 1 N ARG B 165 O ILE B 186 SHEET 6 B 7 VAL B 145 LEU B 148 -1 N VAL B 145 O ASN B 176 SHEET 7 B 7 LYS B 136 THR B 139 -1 N LYS B 136 O LEU B 148 SHEET 1 C 8 LYS A 136 THR A 139 0 SHEET 2 C 8 VAL A 145 LEU A 148 -1 O LEU A 148 N LYS A 136 SHEET 3 C 8 ARG A 165 VAL A 177 -1 O ASN A 176 N VAL A 145 SHEET 4 C 8 GLY A 199 ALA A 205 -1 O GLY A 199 N VAL A 177 SHEET 5 C 8 LEU A 211 GLY A 219 -1 O ALA A 213 N LYS A 204 SHEET 6 C 8 GLU A 236 ASN A 241 -1 O VAL A 240 N MSE A 212 SHEET 7 C 8 ILE A 247 ASN A 251 -1 O LEU A 248 N ILE A 239 SHEET 8 C 8 ILE B 247 ASN B 251 -1 O LYS B 249 N ILE A 247 SHEET 1 D 7 ILE B 247 ASN B 251 0 SHEET 2 D 7 GLU B 236 ASN B 241 -1 N ILE B 239 O LEU B 248 SHEET 3 D 7 LEU B 211 GLY B 219 -1 N MSE B 212 O VAL B 240 SHEET 4 D 7 GLY B 199 ALA B 205 -1 N LYS B 204 O ALA B 213 SHEET 5 D 7 ARG B 165 VAL B 177 -1 N GLY B 171 O ALA B 205 SHEET 6 D 7 VAL B 153 PRO B 157 -1 N ARG B 155 O GLU B 168 SHEET 7 D 7 LEU B 125 SER B 129 -1 N ILE B 128 O MSE B 154 SHEET 1 E 2 LEU A 265 PRO A 271 0 SHEET 2 E 2 TYR A 298 HIS A 303 -1 O GLY A 301 N PHE A 267 SHEET 1 F 3 ILE A 287 LEU A 289 0 SHEET 2 F 3 ARG A 329 TYR A 333 1 O ILE A 330 N VAL A 288 SHEET 3 F 3 ARG A 322 GLU A 326 -1 N ARG A 322 O TYR A 333 SHEET 1 G 2 LEU B 265 PRO B 271 0 SHEET 2 G 2 TYR B 298 HIS B 303 -1 O GLY B 301 N PHE B 267 SHEET 1 H 3 ILE B 287 LEU B 289 0 SHEET 2 H 3 ARG B 329 TYR B 333 1 O LEU B 332 N VAL B 288 SHEET 3 H 3 ARG B 322 GLU B 326 -1 N ARG B 322 O TYR B 333 LINK C VAL A 153 N MSE A 154 1555 1555 1.33 LINK C MSE A 154 N ARG A 155 1555 1555 1.35 LINK C GLU A 168 N MSE A 169 1555 1555 1.36 LINK C MSE A 169 N GLU A 170 1555 1555 1.33 LINK C VAL A 177 N MSE A 178 1555 1555 1.32 LINK C MSE A 178 N ARG A 179 1555 1555 1.35 LINK C LEU A 211 N MSE A 212 1555 1555 1.33 LINK C MSE A 212 N ALA A 213 1555 1555 1.35 LINK C ASP A 224 N MSE A 225 1555 1555 1.32 LINK C MSE A 225 N PRO A 226 1555 1555 1.35 LINK C VAL A 229 N MSE A 230 1555 1555 1.34 LINK C MSE A 230 N ARG A 231 1555 1555 1.34 LINK C ARG A 281 N MSE A 282 1555 1555 1.34 LINK C MSE A 282 N TYR A 283 1555 1555 1.35 LINK C VAL B 153 N MSE B 154 1555 1555 1.34 LINK C MSE B 154 N ARG B 155 1555 1555 1.32 LINK C GLU B 168 N MSE B 169 1555 1555 1.34 LINK C MSE B 169 N GLU B 170 1555 1555 1.33 LINK C VAL B 177 N MSE B 178 1555 1555 1.36 LINK C MSE B 178 N ARG B 179 1555 1555 1.35 LINK C LEU B 211 N MSE B 212 1555 1555 1.33 LINK C MSE B 212 N ALA B 213 1555 1555 1.33 LINK C ASP B 224 N MSE B 225 1555 1555 1.33 LINK C MSE B 225 N PRO B 226 1555 1555 1.35 LINK C VAL B 229 N MSE B 230 1555 1555 1.34 LINK C MSE B 230 N ARG B 231 1555 1555 1.36 LINK C ARG B 281 N MSE B 282 1555 1555 1.35 LINK C MSE B 282 N TYR B 283 1555 1555 1.35 SITE 1 AC1 8 ARG A 190 ASP A 193 ASP A 224 PRO A 226 SITE 2 AC1 8 THR A 319 LYS A 334 THR A 335 HOH A 523 SITE 1 AC2 1 ASP B 296 CRYST1 92.560 92.560 131.900 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010804 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010804 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007582 0.00000