HEADER TRANSFERASE 01-AUG-13 4M0J TITLE CRYSTAL STRUCTURE OF A D-AMINO ACID AMINOTRANSFERASE FROM BURKHOLDERIA TITLE 2 THAILANDENSIS E264 COMPND MOL_ID: 1; COMPND 2 MOLECULE: D-AMINO ACID AMINOTRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA THAILANDENSIS; SOURCE 3 ORGANISM_TAXID: 271848; SOURCE 4 STRAIN: E264; SOURCE 5 GENE: BTH_I0381; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NIAID, SSGCID, STRUCTURAL GENOMICS, NATIONAL INSTITUTE OF ALLERGY AND KEYWDS 2 INFECTIOUS DISEASES, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 3 INFECTIOUS DISEASE, D-AMINO ACID AMINOTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE,SEATTLE AUTHOR 2 STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 3 20-SEP-23 4M0J 1 REMARK SEQADV REVDAT 2 18-APR-18 4M0J 1 REMARK REVDAT 1 02-OCT-13 4M0J 0 JRNL AUTH C.M.LUKACS,T.E.EDWARDS,D.LORIMER JRNL TITL CRYSTAL STRUCTURE OF A D-AMINO ACID AMINOTRANSFERASE FROM JRNL TITL 2 BURKHOLDERIA THAILANDENSIS E264 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.19 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 36949 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1943 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2702 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.76 REMARK 3 BIN R VALUE (WORKING SET) : 0.2260 REMARK 3 BIN FREE R VALUE SET COUNT : 155 REMARK 3 BIN FREE R VALUE : 0.2520 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4228 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 1 REMARK 3 SOLVENT ATOMS : 298 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.06 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.77000 REMARK 3 B22 (A**2) : 0.05000 REMARK 3 B33 (A**2) : -0.67000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.19000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.184 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.164 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.115 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.070 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4319 ; 0.013 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4160 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5894 ; 1.527 ; 1.964 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9502 ; 0.790 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 568 ; 5.957 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 181 ;37.459 ;23.591 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 645 ;13.323 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ;13.219 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 692 ; 0.092 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4982 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 948 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2284 ; 1.960 ; 2.628 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2283 ; 1.959 ; 2.627 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2848 ; 2.914 ; 3.924 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2849 ; 2.914 ; 3.925 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2035 ; 2.404 ; 2.872 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2036 ; 2.404 ; 2.873 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3047 ; 3.659 ; 4.209 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4866 ; 5.802 ;21.568 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4751 ; 5.720 ;21.190 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 6 A 300 REMARK 3 ORIGIN FOR THE GROUP (A): 36.1197 6.7065 8.8743 REMARK 3 T TENSOR REMARK 3 T11: 0.0989 T22: 0.0614 REMARK 3 T33: 0.0970 T12: -0.0238 REMARK 3 T13: 0.0538 T23: -0.0081 REMARK 3 L TENSOR REMARK 3 L11: 0.3156 L22: 0.8801 REMARK 3 L33: 0.5262 L12: -0.3322 REMARK 3 L13: -0.0353 L23: 0.0736 REMARK 3 S TENSOR REMARK 3 S11: 0.0172 S12: -0.0672 S13: 0.0862 REMARK 3 S21: -0.1528 S22: -0.0171 S23: -0.1976 REMARK 3 S31: -0.0163 S32: 0.0780 S33: -0.0000 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 6 B 300 REMARK 3 ORIGIN FOR THE GROUP (A): 8.7806 -0.2435 24.8498 REMARK 3 T TENSOR REMARK 3 T11: 0.0631 T22: 0.0633 REMARK 3 T33: 0.0299 T12: -0.0534 REMARK 3 T13: -0.0172 T23: 0.0261 REMARK 3 L TENSOR REMARK 3 L11: 0.9004 L22: 0.3476 REMARK 3 L33: 0.8849 L12: -0.4791 REMARK 3 L13: 0.1278 L23: -0.1233 REMARK 3 S TENSOR REMARK 3 S11: 0.0162 S12: -0.0886 S13: -0.0460 REMARK 3 S21: -0.0001 S22: 0.0194 S23: 0.0053 REMARK 3 S31: 0.0787 S32: -0.1323 S33: -0.0356 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4M0J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-AUG-13. REMARK 100 THE DEPOSITION ID IS D_1000081312. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-F REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9798 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 300 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39005 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 3.740 REMARK 200 R MERGE (I) : 0.04500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 19.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.10 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.76 REMARK 200 R MERGE FOR SHELL (I) : 0.44300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.180 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1DAA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG4000, 0.2M CACL2, 0.1M TRIS PH REMARK 280 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 57.80000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 36.99000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 57.80000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 36.99000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23780 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 CA CA B 401 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLN A 3 REMARK 465 ALA A 4 REMARK 465 ASP A 5 REMARK 465 ARG A 157 REMARK 465 ARG A 158 REMARK 465 TRP A 159 REMARK 465 LEU A 160 REMARK 465 HIS A 161 REMARK 465 GLU A 301 REMARK 465 SER A 302 REMARK 465 VAL A 303 REMARK 465 MET B -7 REMARK 465 ALA B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 GLN B 3 REMARK 465 ALA B 4 REMARK 465 ASP B 5 REMARK 465 ARG B 157 REMARK 465 ARG B 158 REMARK 465 TRP B 159 REMARK 465 LEU B 160 REMARK 465 HIS B 161 REMARK 465 CYS B 162 REMARK 465 SER B 217 REMARK 465 ASN B 218 REMARK 465 ARG B 219 REMARK 465 ILE B 220 REMARK 465 LEU B 221 REMARK 465 GLU B 222 REMARK 465 GLY B 223 REMARK 465 ILE B 224 REMARK 465 GLU B 301 REMARK 465 SER B 302 REMARK 465 VAL B 303 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 6 CG1 CG2 CD1 REMARK 470 ARG A 17 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 25 CG CD OE1 OE2 REMARK 470 GLU A 50 CG CD OE1 OE2 REMARK 470 ARG A 53 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 71 CG CD CE NZ REMARK 470 ARG A 90 CG CD NE CZ NH1 NH2 REMARK 470 ASP A 142 CG OD1 OD2 REMARK 470 GLN A 147 CG CD OE1 NE2 REMARK 470 GLU A 155 CG CD OE1 OE2 REMARK 470 CYS A 162 SG REMARK 470 ARG A 219 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 239 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 280 CG CD NE CZ NH1 NH2 REMARK 470 ILE B 6 CG1 CG2 CD1 REMARK 470 ARG B 17 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 50 CG CD OE1 OE2 REMARK 470 ARG B 53 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 72 CG CD CE NZ REMARK 470 ASP B 101 CG OD1 OD2 REMARK 470 GLN B 147 CG CD OE1 NE2 REMARK 470 ASP B 163 CG OD1 OD2 REMARK 470 ARG B 216 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 225 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 270 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 280 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 113 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 196 -85.06 -99.52 REMARK 500 SER A 200 31.27 -145.25 REMARK 500 GLU A 264 -103.09 55.86 REMARK 500 GLN A 277 -123.78 43.56 REMARK 500 THR B 196 -85.26 -99.21 REMARK 500 SER B 200 34.07 -141.89 REMARK 500 ALA B 227 58.86 -154.56 REMARK 500 GLU B 264 -102.84 55.96 REMARK 500 ASP B 273 -8.42 70.03 REMARK 500 GLN B 277 -125.23 50.81 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1DAA RELATED DB: PDB REMARK 900 RELATED ID: 3U0G RELATED DB: PDB REMARK 900 RELATED ID: SSGCID-BUTHA.10478.A RELATED DB: TARGETTRACK DBREF 4M0J A 1 303 UNP Q2T1L0 Q2T1L0_BURTA 1 303 DBREF 4M0J B 1 303 UNP Q2T1L0 Q2T1L0_BURTA 1 303 SEQADV 4M0J MET A -7 UNP Q2T1L0 EXPRESSION TAG SEQADV 4M0J ALA A -6 UNP Q2T1L0 EXPRESSION TAG SEQADV 4M0J HIS A -5 UNP Q2T1L0 EXPRESSION TAG SEQADV 4M0J HIS A -4 UNP Q2T1L0 EXPRESSION TAG SEQADV 4M0J HIS A -3 UNP Q2T1L0 EXPRESSION TAG SEQADV 4M0J HIS A -2 UNP Q2T1L0 EXPRESSION TAG SEQADV 4M0J HIS A -1 UNP Q2T1L0 EXPRESSION TAG SEQADV 4M0J HIS A 0 UNP Q2T1L0 EXPRESSION TAG SEQADV 4M0J MET B -7 UNP Q2T1L0 EXPRESSION TAG SEQADV 4M0J ALA B -6 UNP Q2T1L0 EXPRESSION TAG SEQADV 4M0J HIS B -5 UNP Q2T1L0 EXPRESSION TAG SEQADV 4M0J HIS B -4 UNP Q2T1L0 EXPRESSION TAG SEQADV 4M0J HIS B -3 UNP Q2T1L0 EXPRESSION TAG SEQADV 4M0J HIS B -2 UNP Q2T1L0 EXPRESSION TAG SEQADV 4M0J HIS B -1 UNP Q2T1L0 EXPRESSION TAG SEQADV 4M0J HIS B 0 UNP Q2T1L0 EXPRESSION TAG SEQRES 1 A 311 MET ALA HIS HIS HIS HIS HIS HIS MET SER GLN ALA ASP SEQRES 2 A 311 ILE GLU PRO ILE VAL TYR LEU SER VAL ALA SER ARG GLU SEQRES 3 A 311 GLU LEU VAL PRO LEU SER GLU ALA ARG VAL PRO VAL LEU SEQRES 4 A 311 ASP ARG GLY PHE ILE PHE GLY ASP GLY VAL TYR GLU VAL SEQRES 5 A 311 VAL PRO ILE TYR ALA GLU GLY ALA ARG ARG ALA PRO PHE SEQRES 6 A 311 ARG ILE ALA GLN HIS LEU ALA ARG LEU ALA ARG SER LEU SEQRES 7 A 311 LYS LYS ILE GLY ILE ALA ASP PRO HIS ASP GLU ALA GLY SEQRES 8 A 311 TRP ARG ALA LEU VAL ALA ARG LEU VAL ASP ALA ASN ALA SEQRES 9 A 311 ALA ALA LEU GLY ASP GLY GLN HIS ALA ILE VAL TYR ILE SEQRES 10 A 311 GLN VAL THR ARG GLY VAL ALA LYS ARG GLY HIS ALA PHE SEQRES 11 A 311 PRO ALA ASN ALA VAL PRO THR VAL PHE ALA MET ALA SER SEQRES 12 A 311 PRO LEU ALA LEU PRO THR ASP ALA GLN ARG ALA GLN GLY SEQRES 13 A 311 VAL HIS CYS VAL THR ALA GLU ASP ARG ARG TRP LEU HIS SEQRES 14 A 311 CYS ASP ILE LYS SER VAL SER LEU LEU GLY ASN VAL LEU SEQRES 15 A 311 MET ALA GLN HIS ALA ALA GLU HIS ASP ALA ALA GLU THR SEQRES 16 A 311 ILE GLN LEU ARG ASP GLY ASN VAL THR GLU GLY SER SER SEQRES 17 A 311 SER ASN VAL TRP ILE VAL LYS ASN GLY GLU LEU ILE ALA SEQRES 18 A 311 PRO PRO ARG SER ASN ARG ILE LEU GLU GLY ILE ARG TYR SEQRES 19 A 311 ALA LEU VAL GLU GLU LEU ALA GLU GLU CYS GLY ILE ARG SEQRES 20 A 311 PHE VAL ALA ARG GLU ILE ASN GLU ALA GLU LEU ARG ALA SEQRES 21 A 311 ALA ASP GLU ILE LEU LEU THR SER ALA THR LYS GLU ILE SEQRES 22 A 311 LEU PRO VAL THR ARG LEU ASP ASP LEU PRO VAL GLN GLY SEQRES 23 A 311 GLY ARG PRO GLY PRO VAL PHE ASP ALA LEU TYR ALA ALA SEQRES 24 A 311 TYR GLN ARG ALA LYS ALA HIS GLU MET GLU SER VAL SEQRES 1 B 311 MET ALA HIS HIS HIS HIS HIS HIS MET SER GLN ALA ASP SEQRES 2 B 311 ILE GLU PRO ILE VAL TYR LEU SER VAL ALA SER ARG GLU SEQRES 3 B 311 GLU LEU VAL PRO LEU SER GLU ALA ARG VAL PRO VAL LEU SEQRES 4 B 311 ASP ARG GLY PHE ILE PHE GLY ASP GLY VAL TYR GLU VAL SEQRES 5 B 311 VAL PRO ILE TYR ALA GLU GLY ALA ARG ARG ALA PRO PHE SEQRES 6 B 311 ARG ILE ALA GLN HIS LEU ALA ARG LEU ALA ARG SER LEU SEQRES 7 B 311 LYS LYS ILE GLY ILE ALA ASP PRO HIS ASP GLU ALA GLY SEQRES 8 B 311 TRP ARG ALA LEU VAL ALA ARG LEU VAL ASP ALA ASN ALA SEQRES 9 B 311 ALA ALA LEU GLY ASP GLY GLN HIS ALA ILE VAL TYR ILE SEQRES 10 B 311 GLN VAL THR ARG GLY VAL ALA LYS ARG GLY HIS ALA PHE SEQRES 11 B 311 PRO ALA ASN ALA VAL PRO THR VAL PHE ALA MET ALA SER SEQRES 12 B 311 PRO LEU ALA LEU PRO THR ASP ALA GLN ARG ALA GLN GLY SEQRES 13 B 311 VAL HIS CYS VAL THR ALA GLU ASP ARG ARG TRP LEU HIS SEQRES 14 B 311 CYS ASP ILE LYS SER VAL SER LEU LEU GLY ASN VAL LEU SEQRES 15 B 311 MET ALA GLN HIS ALA ALA GLU HIS ASP ALA ALA GLU THR SEQRES 16 B 311 ILE GLN LEU ARG ASP GLY ASN VAL THR GLU GLY SER SER SEQRES 17 B 311 SER ASN VAL TRP ILE VAL LYS ASN GLY GLU LEU ILE ALA SEQRES 18 B 311 PRO PRO ARG SER ASN ARG ILE LEU GLU GLY ILE ARG TYR SEQRES 19 B 311 ALA LEU VAL GLU GLU LEU ALA GLU GLU CYS GLY ILE ARG SEQRES 20 B 311 PHE VAL ALA ARG GLU ILE ASN GLU ALA GLU LEU ARG ALA SEQRES 21 B 311 ALA ASP GLU ILE LEU LEU THR SER ALA THR LYS GLU ILE SEQRES 22 B 311 LEU PRO VAL THR ARG LEU ASP ASP LEU PRO VAL GLN GLY SEQRES 23 B 311 GLY ARG PRO GLY PRO VAL PHE ASP ALA LEU TYR ALA ALA SEQRES 24 B 311 TYR GLN ARG ALA LYS ALA HIS GLU MET GLU SER VAL HET CA B 401 1 HETNAM CA CALCIUM ION FORMUL 3 CA CA 2+ FORMUL 4 HOH *298(H2 O) HELIX 1 1 ASP A 32 GLY A 38 1 7 HELIX 2 2 ARG A 58 ILE A 73 1 16 HELIX 3 3 ASP A 80 ASN A 95 1 16 HELIX 4 4 ASN A 95 GLY A 100 1 6 HELIX 5 5 THR A 141 GLY A 148 1 8 HELIX 6 6 LEU A 169 HIS A 182 1 14 HELIX 7 7 ASN A 218 CYS A 236 1 19 HELIX 8 8 ASN A 246 ALA A 253 1 8 HELIX 9 9 GLY A 282 MET A 300 1 19 HELIX 10 10 ASP B 32 GLY B 38 1 7 HELIX 11 11 ARG B 58 ILE B 73 1 16 HELIX 12 12 ASP B 80 ASN B 95 1 16 HELIX 13 13 ASN B 95 GLY B 100 1 6 HELIX 14 14 THR B 141 GLY B 148 1 8 HELIX 15 15 LEU B 169 HIS B 182 1 14 HELIX 16 16 ALA B 227 GLY B 237 1 11 HELIX 17 17 ASN B 246 ALA B 252 1 7 HELIX 18 18 GLY B 282 MET B 300 1 19 SHEET 1 A 6 ARG A 17 PRO A 22 0 SHEET 2 A 6 ILE A 9 VAL A 14 -1 N VAL A 10 O VAL A 21 SHEET 3 A 6 THR A 129 PRO A 136 -1 O VAL A 130 N SER A 13 SHEET 4 A 6 ALA A 105 THR A 112 -1 N GLN A 110 O PHE A 131 SHEET 5 A 6 GLY A 40 GLU A 50 -1 N ILE A 47 O ALA A 105 SHEET 6 A 6 ARG A 53 PRO A 56 -1 O ALA A 55 N TYR A 48 SHEET 1 B 2 ARG A 27 PRO A 29 0 SHEET 2 B 2 ARG B 27 PRO B 29 -1 O VAL B 28 N VAL A 28 SHEET 1 C 8 ASN A 194 GLY A 198 0 SHEET 2 C 8 GLU A 186 ARG A 191 -1 N GLN A 189 O THR A 196 SHEET 3 C 8 VAL A 149 GLU A 155 1 N VAL A 152 O ILE A 188 SHEET 4 C 8 GLU A 264 LEU A 271 1 O PRO A 267 N VAL A 149 SHEET 5 C 8 GLU A 255 SER A 260 -1 N ILE A 256 O VAL A 268 SHEET 6 C 8 ASN A 202 LYS A 207 -1 N TRP A 204 O LEU A 257 SHEET 7 C 8 GLU A 210 ALA A 213 -1 O ILE A 212 N ILE A 205 SHEET 8 C 8 PHE A 240 ALA A 242 1 O VAL A 241 N LEU A 211 SHEET 1 D 5 ASN A 194 GLY A 198 0 SHEET 2 D 5 GLU A 186 ARG A 191 -1 N GLN A 189 O THR A 196 SHEET 3 D 5 VAL A 149 GLU A 155 1 N VAL A 152 O ILE A 188 SHEET 4 D 5 GLU A 264 LEU A 271 1 O PRO A 267 N VAL A 149 SHEET 5 D 5 LEU A 274 PRO A 275 -1 O LEU A 274 N LEU A 271 SHEET 1 E 6 ARG B 17 PRO B 22 0 SHEET 2 E 6 ILE B 9 VAL B 14 -1 N VAL B 10 O VAL B 21 SHEET 3 E 6 THR B 129 PRO B 136 -1 O ALA B 132 N TYR B 11 SHEET 4 E 6 ALA B 105 THR B 112 -1 N GLN B 110 O PHE B 131 SHEET 5 E 6 GLY B 40 GLU B 50 -1 N ILE B 47 O ALA B 105 SHEET 6 E 6 ARG B 53 PRO B 56 -1 O ARG B 53 N GLU B 50 SHEET 1 F 8 ASN B 194 GLY B 198 0 SHEET 2 F 8 GLU B 186 ARG B 191 -1 N ARG B 191 O ASN B 194 SHEET 3 F 8 VAL B 149 GLU B 155 1 N VAL B 152 O ILE B 188 SHEET 4 F 8 GLU B 264 LEU B 271 1 O ARG B 270 N CYS B 151 SHEET 5 F 8 GLU B 255 SER B 260 -1 N ILE B 256 O VAL B 268 SHEET 6 F 8 ASN B 202 LYS B 207 -1 N VAL B 206 O GLU B 255 SHEET 7 F 8 GLU B 210 ALA B 213 -1 O ILE B 212 N ILE B 205 SHEET 8 F 8 PHE B 240 ALA B 242 1 O VAL B 241 N LEU B 211 SHEET 1 G 5 ASN B 194 GLY B 198 0 SHEET 2 G 5 GLU B 186 ARG B 191 -1 N ARG B 191 O ASN B 194 SHEET 3 G 5 VAL B 149 GLU B 155 1 N VAL B 152 O ILE B 188 SHEET 4 G 5 GLU B 264 LEU B 271 1 O ARG B 270 N CYS B 151 SHEET 5 G 5 LEU B 274 PRO B 275 -1 O LEU B 274 N LEU B 271 LINK OD2 ASP B 142 CA CA B 401 1555 1555 2.46 SITE 1 AC1 1 ASP B 142 CRYST1 115.600 73.980 76.210 90.00 105.35 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008651 0.000000 0.002375 0.00000 SCALE2 0.000000 0.013517 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013607 0.00000