HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 02-AUG-13 4M1A TITLE CRYSTAL STRUCTURE OF A DOMAIN OF UNKNOWN FUNCTION (DUF1904) FROM TITLE 2 SEBALDELLA TERMITIDIS ATCC 33386 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SEBALDELLA TERMITIDIS; SOURCE 3 ORGANISM_TAXID: 526218; SOURCE 4 STRAIN: ATCC 33386; SOURCE 5 GENE: STERM_0053; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET3A KEYWDS PSI-BIOLOGY, NEW YORK STRUCTURAL GENOMICS RESEARCH CONSORTIUM, KEYWDS 2 NYSGRC, PROTEIN STRUCTURE INITIATIVE, DUF1904, ALPHA/BETA, TRIMERIC KEYWDS 3 ASSEMBLY, STRUCTURAL GENOMICS, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR D.KUMARAN,S.CHAMALA,B.EVANS,R.FOTI,A.GIZZI,B.HILLERICH,A.KAR, AUTHOR 2 J.LAFLEUR,R.SEIDEL,G.VILLIGAS,W.ZENCHECK,N.AL OBAIDI,S.C.ALMO, AUTHOR 3 S.SWAMINATHAN,NEW YORK STRUCTURAL GENOMICS RESEARCH CONSORTIUM AUTHOR 4 (NYSGRC) REVDAT 1 14-AUG-13 4M1A 0 JRNL AUTH D.KUMARAN,S.C.ALMO,S.SWAMINATHAN JRNL TITL CRYSTAL STRUCTURE OF A DOMAIN OF UNKNOWN FUNCTION (DUF1904) JRNL TITL 2 FROM SEBALDELLATERMITIDIS ATCC 33386 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.18 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 3 NUMBER OF REFLECTIONS : 23937 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.206 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1291 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1271 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 65.94 REMARK 3 BIN R VALUE (WORKING SET) : 0.1640 REMARK 3 BIN FREE R VALUE SET COUNT : 63 REMARK 3 BIN FREE R VALUE : 0.2020 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1796 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 97 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.93 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.11000 REMARK 3 B22 (A**2) : 0.11000 REMARK 3 B33 (A**2) : -0.34000 REMARK 3 B12 (A**2) : 0.11000 REMARK 3 B13 (A**2) : -0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.118 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.114 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.066 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.159 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1844 ; 0.023 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 1704 ; 0.002 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2494 ; 2.128 ; 1.938 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3920 ; 0.952 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 214 ; 6.085 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 100 ;35.326 ;23.800 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 298 ;15.521 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;24.472 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 264 ; 0.124 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2058 ; 0.012 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 450 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4M1A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-AUG-13. REMARK 100 THE RCSB ID CODE IS RCSB081339. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-JUL-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : SI II REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25228 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 200 DATA REDUNDANCY : 11.100 REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 22.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.96 REMARK 200 COMPLETENESS FOR SHELL (%) : 66.6 REMARK 200 DATA REDUNDANCY IN SHELL : 9.30 REMARK 200 R MERGE FOR SHELL (I) : 0.20300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD, SHELXE, ARP/WARP AND COOT REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM ACETATE 0.1M BIS-TRIS REMARK 280 45% 2-METHYL-2,4-PENTANEDIOL, PH 5.5, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: DIMER OF TRIMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6810 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14000 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -34.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 90.28300 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 45.14150 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 78.18737 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 1 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 3 -0.500000 -0.866025 0.000000 90.28300 REMARK 350 BIOMT2 3 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 4 -0.500000 0.866025 0.000000 45.14150 REMARK 350 BIOMT2 4 -0.866025 -0.500000 0.000000 78.18737 REMARK 350 BIOMT3 4 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 5 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 5 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 5 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 213 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 217 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 226 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 109 REMARK 465 GLU A 110 REMARK 465 ASN A 111 REMARK 465 LEU A 112 REMARK 465 TYR A 113 REMARK 465 PHE A 114 REMARK 465 GLN A 115 REMARK 465 GLY A 116 REMARK 465 HIS A 117 REMARK 465 HIS A 118 REMARK 465 HIS A 119 REMARK 465 HIS A 120 REMARK 465 HIS A 121 REMARK 465 HIS A 122 REMARK 465 HIS A 123 REMARK 465 HIS A 124 REMARK 465 HIS A 125 REMARK 465 HIS A 126 REMARK 465 ALA B 109 REMARK 465 GLU B 110 REMARK 465 ASN B 111 REMARK 465 LEU B 112 REMARK 465 TYR B 113 REMARK 465 PHE B 114 REMARK 465 GLN B 115 REMARK 465 GLY B 116 REMARK 465 HIS B 117 REMARK 465 HIS B 118 REMARK 465 HIS B 119 REMARK 465 HIS B 120 REMARK 465 HIS B 121 REMARK 465 HIS B 122 REMARK 465 HIS B 123 REMARK 465 HIS B 124 REMARK 465 HIS B 125 REMARK 465 HIS B 126 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 7 NE - CZ - NH1 ANGL. DEV. = -3.2 DEGREES REMARK 500 ASP A 16 CB - CG - OD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 ARG A 70 NE - CZ - NH1 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG A 70 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 PHE A 77 CB - CG - CD1 ANGL. DEV. = 4.4 DEGREES REMARK 500 ARG B 7 NE - CZ - NH1 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG B 65 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG B 70 NE - CZ - NH1 ANGL. DEV. = 4.8 DEGREES REMARK 500 ARG B 70 NE - CZ - NH2 ANGL. DEV. = -5.3 DEGREES REMARK 500 PHE B 77 CB - CG - CD1 ANGL. DEV. = 4.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGRC-026982 RELATED DB: TARGETTRACK DBREF 4M1A A 1 108 UNP D1AJN4 D1AJN4_SEBTE 1 108 DBREF 4M1A B 1 108 UNP D1AJN4 D1AJN4_SEBTE 1 108 SEQADV 4M1A ALA A 109 UNP D1AJN4 EXPRESSION TAG SEQADV 4M1A GLU A 110 UNP D1AJN4 EXPRESSION TAG SEQADV 4M1A ASN A 111 UNP D1AJN4 EXPRESSION TAG SEQADV 4M1A LEU A 112 UNP D1AJN4 EXPRESSION TAG SEQADV 4M1A TYR A 113 UNP D1AJN4 EXPRESSION TAG SEQADV 4M1A PHE A 114 UNP D1AJN4 EXPRESSION TAG SEQADV 4M1A GLN A 115 UNP D1AJN4 EXPRESSION TAG SEQADV 4M1A GLY A 116 UNP D1AJN4 EXPRESSION TAG SEQADV 4M1A HIS A 117 UNP D1AJN4 EXPRESSION TAG SEQADV 4M1A HIS A 118 UNP D1AJN4 EXPRESSION TAG SEQADV 4M1A HIS A 119 UNP D1AJN4 EXPRESSION TAG SEQADV 4M1A HIS A 120 UNP D1AJN4 EXPRESSION TAG SEQADV 4M1A HIS A 121 UNP D1AJN4 EXPRESSION TAG SEQADV 4M1A HIS A 122 UNP D1AJN4 EXPRESSION TAG SEQADV 4M1A HIS A 123 UNP D1AJN4 EXPRESSION TAG SEQADV 4M1A HIS A 124 UNP D1AJN4 EXPRESSION TAG SEQADV 4M1A HIS A 125 UNP D1AJN4 EXPRESSION TAG SEQADV 4M1A HIS A 126 UNP D1AJN4 EXPRESSION TAG SEQADV 4M1A ALA B 109 UNP D1AJN4 EXPRESSION TAG SEQADV 4M1A GLU B 110 UNP D1AJN4 EXPRESSION TAG SEQADV 4M1A ASN B 111 UNP D1AJN4 EXPRESSION TAG SEQADV 4M1A LEU B 112 UNP D1AJN4 EXPRESSION TAG SEQADV 4M1A TYR B 113 UNP D1AJN4 EXPRESSION TAG SEQADV 4M1A PHE B 114 UNP D1AJN4 EXPRESSION TAG SEQADV 4M1A GLN B 115 UNP D1AJN4 EXPRESSION TAG SEQADV 4M1A GLY B 116 UNP D1AJN4 EXPRESSION TAG SEQADV 4M1A HIS B 117 UNP D1AJN4 EXPRESSION TAG SEQADV 4M1A HIS B 118 UNP D1AJN4 EXPRESSION TAG SEQADV 4M1A HIS B 119 UNP D1AJN4 EXPRESSION TAG SEQADV 4M1A HIS B 120 UNP D1AJN4 EXPRESSION TAG SEQADV 4M1A HIS B 121 UNP D1AJN4 EXPRESSION TAG SEQADV 4M1A HIS B 122 UNP D1AJN4 EXPRESSION TAG SEQADV 4M1A HIS B 123 UNP D1AJN4 EXPRESSION TAG SEQADV 4M1A HIS B 124 UNP D1AJN4 EXPRESSION TAG SEQADV 4M1A HIS B 125 UNP D1AJN4 EXPRESSION TAG SEQADV 4M1A HIS B 126 UNP D1AJN4 EXPRESSION TAG SEQRES 1 A 126 MSE PRO HIS ILE ARG VAL ARG GLY ALA GLU LYS GLU LYS SEQRES 2 A 126 VAL ARG ASP PHE THR ALA GLY LEU ALA ASP GLU LEU GLY SEQRES 3 A 126 ILE ILE ALA GLU CYS PRO ALA ASP TRP PHE THR PHE GLU SEQRES 4 A 126 TYR VAL GLU THR THR PHE PHE PHE ASP GLY LYS GLU ASP SEQRES 5 A 126 ASP GLY LEU VAL PHE ILE GLU VAL LEU TRP PHE ASP ARG SEQRES 6 A 126 ASP SER GLU ALA ARG ASP LYS ILE ALA ALA LEU PHE THR SEQRES 7 A 126 GLU ARG TRP LYS LYS ILE THR ASP LYS ILE VAL THR ILE SEQRES 8 A 126 VAL PHE ASN PRO LEU ILE GLU ASN MSE TYR TYR GLU ASP SEQRES 9 A 126 GLY VAL HIS PHE ALA GLU ASN LEU TYR PHE GLN GLY HIS SEQRES 10 A 126 HIS HIS HIS HIS HIS HIS HIS HIS HIS SEQRES 1 B 126 MSE PRO HIS ILE ARG VAL ARG GLY ALA GLU LYS GLU LYS SEQRES 2 B 126 VAL ARG ASP PHE THR ALA GLY LEU ALA ASP GLU LEU GLY SEQRES 3 B 126 ILE ILE ALA GLU CYS PRO ALA ASP TRP PHE THR PHE GLU SEQRES 4 B 126 TYR VAL GLU THR THR PHE PHE PHE ASP GLY LYS GLU ASP SEQRES 5 B 126 ASP GLY LEU VAL PHE ILE GLU VAL LEU TRP PHE ASP ARG SEQRES 6 B 126 ASP SER GLU ALA ARG ASP LYS ILE ALA ALA LEU PHE THR SEQRES 7 B 126 GLU ARG TRP LYS LYS ILE THR ASP LYS ILE VAL THR ILE SEQRES 8 B 126 VAL PHE ASN PRO LEU ILE GLU ASN MSE TYR TYR GLU ASP SEQRES 9 B 126 GLY VAL HIS PHE ALA GLU ASN LEU TYR PHE GLN GLY HIS SEQRES 10 B 126 HIS HIS HIS HIS HIS HIS HIS HIS HIS MODRES 4M1A MSE A 1 MET SELENOMETHIONINE MODRES 4M1A MSE A 100 MET SELENOMETHIONINE MODRES 4M1A MSE B 1 MET SELENOMETHIONINE MODRES 4M1A MSE B 100 MET SELENOMETHIONINE HET MSE A 1 8 HET MSE A 100 8 HET MSE B 1 8 HET MSE B 100 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 3 HOH *97(H2 O) HELIX 1 1 GLU A 10 THR A 18 1 9 HELIX 2 2 GLY A 20 GLU A 30 1 11 HELIX 3 3 PRO A 32 PHE A 36 5 5 HELIX 4 4 ASP A 66 LYS A 83 1 18 HELIX 5 5 ILE A 97 MSE A 100 5 4 HELIX 6 6 GLU B 10 THR B 18 1 9 HELIX 7 7 GLY B 20 GLU B 30 1 11 HELIX 8 8 PRO B 32 PHE B 36 5 5 HELIX 9 9 ASP B 66 LYS B 83 1 18 HELIX 10 10 ILE B 97 MSE B 100 5 4 SHEET 1 A 4 THR A 37 TYR A 40 0 SHEET 2 A 4 HIS A 3 ARG A 7 1 N ILE A 4 O THR A 37 SHEET 3 A 4 VAL A 56 TRP A 62 -1 O LEU A 61 N HIS A 3 SHEET 4 A 4 VAL A 89 PRO A 95 1 O THR A 90 N VAL A 56 SHEET 1 B 2 PHE A 46 PHE A 47 0 SHEET 2 B 2 LYS A 50 GLU A 51 -1 O LYS A 50 N PHE A 47 SHEET 1 C 2 TYR A 102 GLU A 103 0 SHEET 2 C 2 VAL A 106 HIS A 107 -1 O VAL A 106 N GLU A 103 SHEET 1 D 4 THR B 37 TYR B 40 0 SHEET 2 D 4 HIS B 3 ARG B 7 1 N ILE B 4 O THR B 37 SHEET 3 D 4 VAL B 56 TRP B 62 -1 O LEU B 61 N HIS B 3 SHEET 4 D 4 VAL B 89 PRO B 95 1 O THR B 90 N VAL B 56 SHEET 1 E 2 PHE B 46 PHE B 47 0 SHEET 2 E 2 LYS B 50 GLU B 51 -1 O LYS B 50 N PHE B 47 SHEET 1 F 2 TYR B 102 GLU B 103 0 SHEET 2 F 2 VAL B 106 HIS B 107 -1 O VAL B 106 N GLU B 103 LINK C MSE A 1 N PRO A 2 1555 1555 1.41 LINK C ASN A 99 N MSE A 100 1555 1555 1.34 LINK C MSE A 100 N TYR A 101 1555 1555 1.32 LINK C MSE B 1 N PRO B 2 1555 1555 1.41 LINK C ASN B 99 N MSE B 100 1555 1555 1.34 LINK C MSE B 100 N TYR B 101 1555 1555 1.31 CISPEP 1 MSE A 1 PRO A 2 0 -5.44 CISPEP 2 MSE B 1 PRO B 2 0 0.22 CRYST1 90.283 90.283 37.099 90.00 90.00 120.00 P 3 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011076 0.006395 0.000000 0.00000 SCALE2 0.000000 0.012790 0.000000 0.00000 SCALE3 0.000000 0.000000 0.026955 0.00000 HETATM 1 N MSE A 1 4.487 14.849 0.899 1.00 57.06 N HETATM 2 CA MSE A 1 5.126 13.600 1.343 1.00 56.52 C HETATM 3 C MSE A 1 6.447 14.112 1.935 1.00 54.29 C HETATM 4 O MSE A 1 6.592 15.328 1.880 1.00 71.99 O HETATM 5 CB MSE A 1 5.137 12.791 0.045 1.00 52.31 C HETATM 6 CG MSE A 1 6.574 12.586 -0.302 1.00 58.07 C HETATM 7 SE MSE A 1 7.296 13.376 -1.941 1.00 76.67 SE HETATM 8 CE MSE A 1 7.706 15.245 -1.468 1.00 62.73 C