HEADER IMMUNE SYSTEM 02-AUG-13 4M1G TITLE STRUCTURE OF MURINE IGG2A A27D7-FAB IN COMPLEX WITH VACCINIA ANTIGEN TITLE 2 A33R AT THE RESOLUTION OF 1.6 ANGSTROMS COMPND MOL_ID: 1; COMPND 2 MOLECULE: MURINE IGG2A A27D7 LIGHT CHAIN FAB DOMAIN; COMPND 3 CHAIN: L; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: MURINE IGG2A A27D7 HEAVY CHAIN FAB DOMAIN; COMPND 7 CHAIN: H; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: A33R; COMPND 11 CHAIN: A, B; COMPND 12 FRAGMENT: ECTODOMAIN (UNP RESIDUES 89-185); COMPND 13 SYNONYM: EEV GLYCOPROTEIN, EEV MEMBRANE GLYCOPROTEIN, EEV MEMBRANE COMPND 14 PHOSPHOGLYCOPROTEIN, VACV-DUKE-164, VACV152; COMPND 15 ENGINEERED: YES; COMPND 16 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_TAXID: 10090; SOURCE 4 STRAIN: BALB/C B-CELL; SOURCE 5 CELL: HYBRIDOMA; SOURCE 6 EXPRESSION_SYSTEM: MUS MUSCULUS; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 10090; SOURCE 8 OTHER_DETAILS: FUSION OF SP2/0 MYELOMA CELL LINE WITH SPLENOCYTES; SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 11 ORGANISM_TAXID: 10090; SOURCE 12 STRAIN: BALB/C B-CELL; SOURCE 13 CELL: HYBRIDOMA; SOURCE 14 EXPRESSION_SYSTEM: MUS MUSCULUS; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 10090; SOURCE 16 OTHER_DETAILS: FUSION OF SP2/0 MYELOMA CELL LINE WITH SPLENOCYTES; SOURCE 17 MOL_ID: 3; SOURCE 18 ORGANISM_SCIENTIFIC: VACCINIA VIRUS; SOURCE 19 ORGANISM_TAXID: 10245; SOURCE 20 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 21 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 22 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 23 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 24 EXPRESSION_SYSTEM_PLASMID: PNAN::A33 (90-185) KEYWDS IGG DOMAIN, ANTIBODY-ANTIGEN COMPLEX, FV, CH1, IGG2A, ANTIGEN-BINDING KEYWDS 2 FRAGMENT (FAB), A33R ANTIGEN, PAPAIN DIGEST OF THE MAB, EEV MEMBRANE KEYWDS 3 (OUTER MEMBRANE OF VACCINIA EV FORM), IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR M.H.MATHO,A.M.SCHLOSSMAN,D.M.ZAJONC REVDAT 3 20-SEP-23 4M1G 1 REMARK SEQADV REVDAT 2 23-SEP-15 4M1G 1 JRNL REMARK REVDAT 1 06-AUG-14 4M1G 0 JRNL AUTH M.H.MATHO,A.SCHLOSSMAN,X.MENG,M.R.BENHNIA,T.KAEVER,M.BULLER, JRNL AUTH 2 K.DORONIN,S.PARKER,B.PETERS,S.CROTTY,Y.XIANG,D.M.ZAJONC JRNL TITL STRUCTURAL AND FUNCTIONAL CHARACTERIZATION OF ANTI-A33 JRNL TITL 2 ANTIBODIES REVEAL A POTENT CROSS-SPECIES ORTHOPOXVIRUSES JRNL TITL 3 NEUTRALIZER. JRNL REF PLOS PATHOG. V. 11 05148 2015 JRNL REFN ISSN 1553-7366 JRNL PMID 26325270 JRNL DOI 10.1371/JOURNAL.PPAT.1005148 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.51 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 83232 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.226 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4390 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6099 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.95 REMARK 3 BIN R VALUE (WORKING SET) : 0.2610 REMARK 3 BIN FREE R VALUE SET COUNT : 322 REMARK 3 BIN FREE R VALUE : 0.2590 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4522 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 483 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 16.52 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.093 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.091 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.058 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.602 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.949 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4642 ; 0.005 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6324 ; 1.064 ; 1.950 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 586 ; 6.086 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 178 ;32.402 ;24.888 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 740 ;12.041 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;13.630 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 716 ; 0.071 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3457 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4M1G COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-AUG-13. REMARK 100 THE DEPOSITION ID IS D_1000081345. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-MAY-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97945 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MONOCHROMATOR SIDE SCATTERING REMARK 200 BENT CUBE-ROOT I-BEAM SINGLE REMARK 200 CRYSTAL, ASYMMETRIC CUT 4.965 REMARK 200 DEGS, CRYSTAL TYPE SI(111), REMARK 200 MIRRORS RH COATED FLAT MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 87767 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 47.510 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : 0.08200 REMARK 200 R SYM (I) : 0.08200 REMARK 200 FOR THE DATA SET : 13.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.30 REMARK 200 R MERGE FOR SHELL (I) : 0.65200 REMARK 200 R SYM FOR SHELL (I) : 0.65200 REMARK 200 FOR SHELL : 2.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRIES 3LS4, 3K7B REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.95 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M SODIUM CACODYLATE, 0.2M NACL, REMARK 280 2.0M AMMONIUM SULFATE, PH 6.5, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 84.88800 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 42.44400 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 42.44400 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 84.88800 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H, A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH L 450 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 CYS L 215 REMARK 465 GLY H 134 REMARK 465 ASP H 135 REMARK 465 THR H 136 REMARK 465 THR H 137 REMARK 465 MET A 89 REMARK 465 SER A 90 REMARK 465 THR A 91 REMARK 465 THR A 92 REMARK 465 GLN A 93 REMARK 465 TYR A 94 REMARK 465 ASP A 95 REMARK 465 HIS A 96 REMARK 465 LYS A 97 REMARK 465 GLU A 98 REMARK 465 SER A 164 REMARK 465 ASP A 165 REMARK 465 TYR A 166 REMARK 465 ASN A 185 REMARK 465 MET B 89 REMARK 465 SER B 90 REMARK 465 THR B 91 REMARK 465 THR B 92 REMARK 465 GLN B 93 REMARK 465 TYR B 94 REMARK 465 ASP B 95 REMARK 465 HIS B 96 REMARK 465 LYS B 97 REMARK 465 GLU B 98 REMARK 465 THR B 162 REMARK 465 THR B 163 REMARK 465 SER B 164 REMARK 465 ASP B 165 REMARK 465 TYR B 166 REMARK 465 GLN B 167 REMARK 465 ASP B 168 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN H 1 CG CD OE1 NE2 REMARK 470 CYS H 133 SG REMARK 470 GLN A 167 CG CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR L 52 -43.47 72.04 REMARK 500 ALA L 85 174.05 177.44 REMARK 500 SER H 15 -4.52 71.21 REMARK 500 VAL H 132 1.89 -62.93 REMARK 500 SER H 165 -30.38 -132.28 REMARK 500 SER H 177 -112.99 57.95 REMARK 500 ASP A 168 17.48 85.25 REMARK 500 ASP A 170 61.70 -118.26 REMARK 500 THR B 160 -160.15 -118.35 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 L 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 L 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4LQF RELATED DB: PDB REMARK 900 RELATED ID: 4LU5 RELATED DB: PDB REMARK 900 RELATED ID: 3K7B RELATED DB: PDB REMARK 900 THE STRUCTURE OF THE POXVIRUS A33 PROTEIN REVEALS A DIMER OF UNIQUE REMARK 900 C-TYPE LECTIN-LIKE DOMAINS DBREF 4M1G A 89 185 UNP Q71TT1 Q71TT1_9POXV 89 185 DBREF 4M1G B 89 185 UNP Q71TT1 Q71TT1_9POXV 89 185 DBREF 4M1G H 1 220 PDB 4M1G 4M1G 1 220 DBREF 4M1G L 1 215 PDB 4M1G 4M1G 1 215 SEQADV 4M1G MET A 89 UNP Q71TT1 SER 89 ENGINEERED MUTATION SEQADV 4M1G MET A 118 UNP Q71TT1 LEU 118 ENGINEERED MUTATION SEQADV 4M1G ALA A 123 UNP Q71TT1 LYS 123 ENGINEERED MUTATION SEQADV 4M1G MET A 140 UNP Q71TT1 LEU 140 ENGINEERED MUTATION SEQADV 4M1G MET B 89 UNP Q71TT1 SER 89 ENGINEERED MUTATION SEQADV 4M1G MET B 118 UNP Q71TT1 LEU 118 ENGINEERED MUTATION SEQADV 4M1G ALA B 123 UNP Q71TT1 LYS 123 ENGINEERED MUTATION SEQADV 4M1G MET B 140 UNP Q71TT1 LEU 140 ENGINEERED MUTATION SEQRES 1 L 215 GLU LEU VAL LEU THR GLN SER PRO THR THR MET ALA ALA SEQRES 2 L 215 SER PRO GLY GLU LYS ILE THR ILE THR CYS SER ALA SER SEQRES 3 L 215 SER SER ILE SER SER ASN TYR LEU HIS TRP TYR GLN GLN SEQRES 4 L 215 LYS PRO GLY PHE SER PRO LYS LEU LEU ILE TYR ARG THR SEQRES 5 L 215 SER ASN LEU ALA SER GLY VAL PRO ALA ARG PHE SER GLY SEQRES 6 L 215 SER GLY SER GLY THR SER TYR SER LEU THR ILE GLY THR SEQRES 7 L 215 MET GLU ALA GLU ASP VAL ALA THR TYR TYR CYS GLN GLN SEQRES 8 L 215 GLY SER SER ILE PRO PHE THR PHE GLY SER GLY THR LYS SEQRES 9 L 215 LEU GLU ILE LYS ARG ALA ASP ALA ALA PRO THR VAL SER SEQRES 10 L 215 ILE PHE PRO PRO SER SER GLU GLN LEU THR SER GLY GLY SEQRES 11 L 215 ALA SER VAL VAL CYS PHE LEU ASN ASN PHE TYR PRO LYS SEQRES 12 L 215 ASP ILE ASN VAL LYS TRP LYS ILE ASP GLY SER GLU ARG SEQRES 13 L 215 GLN ASN GLY VAL LEU ASN SER TRP THR ASP GLN ASP SER SEQRES 14 L 215 LYS ASP SER THR TYR SER MET SER SER THR LEU THR LEU SEQRES 15 L 215 THR LYS ASP GLU TYR GLU ARG HIS ASN SER TYR THR CYS SEQRES 16 L 215 GLU ALA THR HIS LYS THR SER THR SER PRO ILE VAL LYS SEQRES 17 L 215 SER PHE ASN ARG ASN GLU CYS SEQRES 1 H 220 GLN VAL GLN LEU LYS GLU SER GLY PRO GLY LEU VAL ALA SEQRES 2 H 220 PRO SER GLN SER LEU SER ILE THR CYS THR VAL SER GLY SEQRES 3 H 220 PHE SER LEU THR ASP TYR GLY VAL SER TRP ILE ARG GLN SEQRES 4 H 220 PRO PRO GLY LYS GLY LEU GLU TRP LEU GLY VAL THR TRP SEQRES 5 H 220 GLY GLY GLY THR THR TYR TYR ASN SER ALA LEU LYS SER SEQRES 6 H 220 ARG LEU SER ILE SER LYS ASP ASN SER LYS SER GLN VAL SEQRES 7 H 220 PHE LEU LYS MET ASN SER LEU GLN THR ASP ASP THR ALA SEQRES 8 H 220 MET TYR TYR CYS ALA LYS HIS LYS ALA SER TYR ASN GLY SEQRES 9 H 220 LEU ASP TYR TRP GLY GLN GLY THR THR LEU THR VAL SER SEQRES 10 H 220 SER ALA LYS THR THR ALA PRO SER VAL TYR PRO LEU ALA SEQRES 11 H 220 PRO VAL CYS GLY ASP THR THR GLY SER SER VAL THR LEU SEQRES 12 H 220 GLY CYS LEU VAL LYS GLY TYR PHE PRO GLU PRO VAL THR SEQRES 13 H 220 LEU THR TRP ASN SER GLY SER LEU SER SER GLY VAL HIS SEQRES 14 H 220 THR PHE PRO ALA VAL LEU GLN SER ASP LEU TYR THR LEU SEQRES 15 H 220 SER SER SER VAL THR VAL THR SER SER THR TRP PRO SER SEQRES 16 H 220 GLN SER ILE THR CYS ASN VAL ALA HIS PRO ALA SER SER SEQRES 17 H 220 THR LYS VAL ASP LYS LYS ILE GLU PRO ARG GLY PRO SEQRES 1 A 97 MET SER THR THR GLN TYR ASP HIS LYS GLU SER CYS ASN SEQRES 2 A 97 GLY LEU TYR TYR GLN GLY SER CYS TYR ILE LEU HIS SER SEQRES 3 A 97 ASP TYR GLN MET PHE SER ASP ALA ALA ALA ASN CYS THR SEQRES 4 A 97 ALA GLU SER SER THR LEU PRO ASN LYS SER ASP VAL MET SEQRES 5 A 97 ILE THR TRP LEU ILE ASP TYR VAL GLU ASP THR TRP GLY SEQRES 6 A 97 SER ASP GLY ASN PRO ILE THR LYS THR THR SER ASP TYR SEQRES 7 A 97 GLN ASP SER ASP VAL SER GLN GLU VAL ARG LYS TYR PHE SEQRES 8 A 97 CYS VAL LYS THR MET ASN SEQRES 1 B 97 MET SER THR THR GLN TYR ASP HIS LYS GLU SER CYS ASN SEQRES 2 B 97 GLY LEU TYR TYR GLN GLY SER CYS TYR ILE LEU HIS SER SEQRES 3 B 97 ASP TYR GLN MET PHE SER ASP ALA ALA ALA ASN CYS THR SEQRES 4 B 97 ALA GLU SER SER THR LEU PRO ASN LYS SER ASP VAL MET SEQRES 5 B 97 ILE THR TRP LEU ILE ASP TYR VAL GLU ASP THR TRP GLY SEQRES 6 B 97 SER ASP GLY ASN PRO ILE THR LYS THR THR SER ASP TYR SEQRES 7 B 97 GLN ASP SER ASP VAL SER GLN GLU VAL ARG LYS TYR PHE SEQRES 8 B 97 CYS VAL LYS THR MET ASN HET SO4 L 301 5 HET SO4 L 302 5 HETNAM SO4 SULFATE ION FORMUL 5 SO4 2(O4 S 2-) FORMUL 7 HOH *483(H2 O) HELIX 1 1 SER L 30 ASN L 32 5 3 HELIX 2 2 GLU L 80 VAL L 84 5 5 HELIX 3 3 SER L 122 SER L 128 1 7 HELIX 4 4 LYS L 184 ARG L 189 1 6 HELIX 5 5 LEU H 63 SER H 65 5 3 HELIX 6 6 GLN H 86 THR H 90 5 5 HELIX 7 7 SER H 161 SER H 163 5 3 HELIX 8 8 SER H 191 TRP H 193 5 3 HELIX 9 9 PRO H 205 SER H 208 5 4 HELIX 10 10 MET A 118 GLU A 129 1 12 HELIX 11 11 ILE A 141 GLU A 149 1 9 HELIX 12 12 MET B 118 GLU B 129 1 12 HELIX 13 13 ASN B 135 MET B 140 1 6 HELIX 14 14 LEU B 144 GLU B 149 1 6 SHEET 1 A 3 LEU L 4 SER L 7 0 SHEET 2 A 3 ILE L 19 ILE L 29 -1 O SER L 24 N THR L 5 SHEET 3 A 3 PHE L 63 ILE L 76 -1 O ILE L 76 N ILE L 19 SHEET 1 B 6 THR L 10 ALA L 13 0 SHEET 2 B 6 THR L 103 ILE L 107 1 O GLU L 106 N MET L 11 SHEET 3 B 6 ALA L 85 GLN L 91 -1 N TYR L 87 O THR L 103 SHEET 4 B 6 LEU L 34 GLN L 39 -1 N TYR L 37 O TYR L 88 SHEET 5 B 6 LYS L 46 TYR L 50 -1 O LEU L 48 N TRP L 36 SHEET 6 B 6 ASN L 54 LEU L 55 -1 O ASN L 54 N TYR L 50 SHEET 1 C 4 THR L 10 ALA L 13 0 SHEET 2 C 4 THR L 103 ILE L 107 1 O GLU L 106 N MET L 11 SHEET 3 C 4 ALA L 85 GLN L 91 -1 N TYR L 87 O THR L 103 SHEET 4 C 4 THR L 98 PHE L 99 -1 O THR L 98 N GLN L 91 SHEET 1 D 4 THR L 115 PHE L 119 0 SHEET 2 D 4 GLY L 130 PHE L 140 -1 O ASN L 138 N THR L 115 SHEET 3 D 4 TYR L 174 THR L 183 -1 O LEU L 180 N VAL L 133 SHEET 4 D 4 VAL L 160 TRP L 164 -1 N SER L 163 O SER L 177 SHEET 1 E 4 SER L 154 ARG L 156 0 SHEET 2 E 4 ASN L 146 ILE L 151 -1 N TRP L 149 O ARG L 156 SHEET 3 E 4 SER L 192 THR L 198 -1 O GLU L 196 N LYS L 148 SHEET 4 E 4 ILE L 206 ASN L 211 -1 O ILE L 206 N ALA L 197 SHEET 1 F 4 GLN H 3 SER H 7 0 SHEET 2 F 4 LEU H 18 SER H 25 -1 O THR H 23 N LYS H 5 SHEET 3 F 4 GLN H 77 MET H 82 -1 O MET H 82 N LEU H 18 SHEET 4 F 4 LEU H 67 ASP H 72 -1 N SER H 70 O PHE H 79 SHEET 1 G 6 LEU H 11 VAL H 12 0 SHEET 2 G 6 THR H 112 VAL H 116 1 O THR H 115 N VAL H 12 SHEET 3 G 6 ALA H 91 HIS H 98 -1 N TYR H 93 O THR H 112 SHEET 4 G 6 VAL H 34 GLN H 39 -1 N ILE H 37 O TYR H 94 SHEET 5 G 6 GLU H 46 THR H 51 -1 O LEU H 48 N TRP H 36 SHEET 6 G 6 THR H 57 TYR H 59 -1 O TYR H 58 N VAL H 50 SHEET 1 H 4 LEU H 11 VAL H 12 0 SHEET 2 H 4 THR H 112 VAL H 116 1 O THR H 115 N VAL H 12 SHEET 3 H 4 ALA H 91 HIS H 98 -1 N TYR H 93 O THR H 112 SHEET 4 H 4 LEU H 105 TRP H 108 -1 O TYR H 107 N LYS H 97 SHEET 1 I 4 SER H 125 LEU H 129 0 SHEET 2 I 4 SER H 140 TYR H 150 -1 O LEU H 146 N TYR H 127 SHEET 3 I 4 LEU H 179 THR H 189 -1 O TYR H 180 N TYR H 150 SHEET 4 I 4 VAL H 168 GLN H 176 -1 N PHE H 171 O SER H 183 SHEET 1 J 3 THR H 156 TRP H 159 0 SHEET 2 J 3 THR H 199 HIS H 204 -1 O ASN H 201 N THR H 158 SHEET 3 J 3 THR H 209 LYS H 214 -1 O VAL H 211 N VAL H 202 SHEET 1 K 3 LEU A 103 TYR A 105 0 SHEET 2 K 3 SER A 108 GLN A 117 -1 O TYR A 110 N LEU A 103 SHEET 3 K 3 ARG A 176 THR A 183 -1 O LYS A 182 N CYS A 109 SHEET 1 L 3 LEU B 103 TYR B 105 0 SHEET 2 L 3 SER B 108 GLN B 117 -1 O TYR B 110 N LEU B 103 SHEET 3 L 3 ARG B 176 THR B 183 -1 O TYR B 178 N HIS B 113 SSBOND 1 CYS L 23 CYS L 89 1555 1555 2.07 SSBOND 2 CYS L 135 CYS L 195 1555 1555 2.06 SSBOND 3 CYS H 22 CYS H 95 1555 1555 2.05 SSBOND 4 CYS H 145 CYS H 200 1555 1555 2.02 SSBOND 5 CYS A 100 CYS A 109 1555 1555 2.04 SSBOND 6 CYS A 126 CYS A 180 1555 1555 2.06 SSBOND 7 CYS B 100 CYS B 109 1555 1555 2.05 SSBOND 8 CYS B 126 CYS B 180 1555 1555 2.06 CISPEP 1 SER L 7 PRO L 8 0 -7.65 CISPEP 2 ILE L 95 PRO L 96 0 -0.03 CISPEP 3 TYR L 141 PRO L 142 0 2.06 CISPEP 4 PHE H 151 PRO H 152 0 -8.18 CISPEP 5 GLU H 153 PRO H 154 0 -0.43 CISPEP 6 TRP H 193 PRO H 194 0 6.52 CISPEP 7 GLN A 167 ASP A 168 0 -2.75 SITE 1 AC1 5 GLU L 155 ARG L 156 GLN L 157 ASN L 158 SITE 2 AC1 5 HOH L 510 SITE 1 AC2 5 LYS L 150 SER L 154 GLU L 155 ASN L 211 SITE 2 AC2 5 HOH L 538 CRYST1 95.019 95.019 127.332 90.00 90.00 120.00 P 32 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010524 0.006076 0.000000 0.00000 SCALE2 0.000000 0.012152 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007853 0.00000