HEADER TRANSLATION 02-AUG-13 4M1K TITLE CRYSTAL STRUCTURE OF ELONGATION FACTOR G (EFG) COMPND MOL_ID: 1; COMPND 2 MOLECULE: ELONGATION FACTOR G; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: EF-G; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 274; SOURCE 4 GENE: FUSA, FUS; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ELONGATION FACTOR G, TRANSLATION EXPDTA X-RAY DIFFRACTION AUTHOR G.LIU,J.DONG,W.GONG,Y.QIN REVDAT 2 08-NOV-23 4M1K 1 REMARK SEQADV REVDAT 1 06-AUG-14 4M1K 0 JRNL AUTH G.LIU,J.DONG,W.GONG,Y.QIN JRNL TITL CRYSTAL STRUCTURE OF ELONGATION FACTOR G (EFG) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.1_743) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.00 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 17639 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.292 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.090 REMARK 3 FREE R VALUE TEST SET COUNT : 898 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 37.9976 - 5.3597 1.00 2963 138 0.1866 0.2428 REMARK 3 2 5.3597 - 4.2560 1.00 2798 150 0.1540 0.2327 REMARK 3 3 4.2560 - 3.7185 1.00 2787 154 0.1885 0.2909 REMARK 3 4 3.7185 - 3.3787 1.00 2753 156 0.2091 0.3799 REMARK 3 5 3.3787 - 3.1367 1.00 2751 144 0.2369 0.3530 REMARK 3 6 3.1367 - 2.9518 0.99 2689 156 0.2464 0.3533 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.10 REMARK 3 SHRINKAGE RADIUS : 0.83 REMARK 3 K_SOL : 0.31 REMARK 3 B_SOL : 25.30 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.730 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.220 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.17250 REMARK 3 B22 (A**2) : 6.15680 REMARK 3 B33 (A**2) : -7.32930 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 5229 REMARK 3 ANGLE : 1.227 7094 REMARK 3 CHIRALITY : 0.076 810 REMARK 3 PLANARITY : 0.005 920 REMARK 3 DIHEDRAL : 20.044 1984 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 6:289) REMARK 3 ORIGIN FOR THE GROUP (A): -16.6375 -10.7321 -15.0799 REMARK 3 T TENSOR REMARK 3 T11: 0.1687 T22: 0.0934 REMARK 3 T33: 0.0911 T12: -0.0320 REMARK 3 T13: -0.0120 T23: 0.0203 REMARK 3 L TENSOR REMARK 3 L11: 0.8338 L22: 0.5510 REMARK 3 L33: 1.2476 L12: 0.3907 REMARK 3 L13: -0.2251 L23: 0.2983 REMARK 3 S TENSOR REMARK 3 S11: 0.1264 S12: -0.0187 S13: 0.0084 REMARK 3 S21: 0.2214 S22: 0.0070 S23: -0.0605 REMARK 3 S31: 0.0041 S32: 0.0455 S33: 0.0074 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 290:366) REMARK 3 ORIGIN FOR THE GROUP (A): -8.4490 2.9069 -40.5305 REMARK 3 T TENSOR REMARK 3 T11: 0.1227 T22: 0.3112 REMARK 3 T33: 0.1866 T12: -0.0218 REMARK 3 T13: 0.0259 T23: 0.0421 REMARK 3 L TENSOR REMARK 3 L11: 0.4424 L22: 0.2910 REMARK 3 L33: 0.4604 L12: 0.2506 REMARK 3 L13: -0.0875 L23: -0.2364 REMARK 3 S TENSOR REMARK 3 S11: -0.0014 S12: 0.0803 S13: 0.0673 REMARK 3 S21: -0.1151 S22: -0.0114 S23: 0.0915 REMARK 3 S31: 0.0452 S32: 0.1316 S33: -0.0011 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 367:418) REMARK 3 ORIGIN FOR THE GROUP (A): 2.5338 1.9588 -38.7235 REMARK 3 T TENSOR REMARK 3 T11: 0.1289 T22: 0.2096 REMARK 3 T33: 0.1693 T12: 0.0172 REMARK 3 T13: 0.0428 T23: -0.0421 REMARK 3 L TENSOR REMARK 3 L11: 0.9306 L22: 0.2275 REMARK 3 L33: 0.1117 L12: -0.2350 REMARK 3 L13: 0.3212 L23: -0.1087 REMARK 3 S TENSOR REMARK 3 S11: 0.3258 S12: 0.2423 S13: -0.0898 REMARK 3 S21: -0.1618 S22: -0.2405 S23: -0.0371 REMARK 3 S31: 0.0414 S32: 0.1001 S33: 0.1203 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 419:455) REMARK 3 ORIGIN FOR THE GROUP (A): 19.5958 -7.2597 -40.4497 REMARK 3 T TENSOR REMARK 3 T11: 0.6357 T22: 0.6742 REMARK 3 T33: 0.6058 T12: -0.1330 REMARK 3 T13: -0.0672 T23: -0.0421 REMARK 3 L TENSOR REMARK 3 L11: 0.0593 L22: 0.1545 REMARK 3 L33: 0.0581 L12: 0.0224 REMARK 3 L13: -0.0086 L23: -0.0944 REMARK 3 S TENSOR REMARK 3 S11: -0.1154 S12: 0.2994 S13: 0.1403 REMARK 3 S21: -0.0835 S22: -0.4741 S23: -0.4584 REMARK 3 S31: -0.0972 S32: 0.1511 S33: -0.0058 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 456:562) REMARK 3 ORIGIN FOR THE GROUP (A): 33.9435 5.3713 -38.5207 REMARK 3 T TENSOR REMARK 3 T11: 0.0955 T22: 0.1626 REMARK 3 T33: 0.2634 T12: 0.0237 REMARK 3 T13: -0.0415 T23: 0.0251 REMARK 3 L TENSOR REMARK 3 L11: 0.4131 L22: 0.4507 REMARK 3 L33: 0.3819 L12: 0.0845 REMARK 3 L13: 0.0611 L23: -0.1168 REMARK 3 S TENSOR REMARK 3 S11: 0.0493 S12: -0.1286 S13: 0.0084 REMARK 3 S21: -0.1021 S22: 0.0103 S23: 0.0629 REMARK 3 S31: -0.0648 S32: -0.0933 S33: 0.0149 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESSEQ 563:688) REMARK 3 ORIGIN FOR THE GROUP (A): 25.0279 4.3241 -21.0043 REMARK 3 T TENSOR REMARK 3 T11: 0.1155 T22: 0.1958 REMARK 3 T33: 0.0081 T12: -0.1521 REMARK 3 T13: 0.0559 T23: 0.1821 REMARK 3 L TENSOR REMARK 3 L11: 0.5236 L22: 0.2564 REMARK 3 L33: 0.1302 L12: 0.1016 REMARK 3 L13: 0.1383 L23: 0.1086 REMARK 3 S TENSOR REMARK 3 S11: 0.2709 S12: -0.2217 S13: -0.0779 REMARK 3 S21: 0.0873 S22: -0.0992 S23: -0.0042 REMARK 3 S31: -0.0462 S32: 0.0783 S33: 0.0662 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4M1K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 22-AUG-13. REMARK 100 THE DEPOSITION ID IS D_1000081349. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-OCT-12 REMARK 200 TEMPERATURE (KELVIN) : 90 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU MICROMAX-007 HF REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54178 REMARK 200 MONOCHROMATOR : 0.000 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV++ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17685 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.54900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: 1FNM REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.64 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 5MM TRIS-HCL (PH 7.6), 10MM MGCL2, 5MM REMARK 280 GDP, 20-23% PEG8000, 0.1M TRIS-CL PH7.5-7.6, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 37.99450 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 61.55900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.38350 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 61.55900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 37.99450 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.38350 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 VAL A 3 REMARK 465 LYS A 4 REMARK 465 VAL A 5 REMARK 465 HIS A 40 REMARK 465 LYS A 41 REMARK 465 ILE A 42 REMARK 465 GLY A 43 REMARK 465 GLU A 44 REMARK 465 VAL A 45 REMARK 465 HIS A 46 REMARK 465 GLU A 47 REMARK 465 GLY A 48 REMARK 465 ALA A 49 REMARK 465 ALA A 50 REMARK 465 THR A 51 REMARK 465 MET A 52 REMARK 465 ASP A 53 REMARK 465 PHE A 54 REMARK 465 MET A 55 REMARK 465 GLU A 56 REMARK 465 GLN A 57 REMARK 465 GLU A 58 REMARK 465 ARG A 59 REMARK 465 GLU A 60 REMARK 465 ARG A 61 REMARK 465 GLY A 62 REMARK 465 ILE A 63 REMARK 465 THR A 64 REMARK 465 ILE A 65 REMARK 465 THR A 66 REMARK 465 LYS A 689 REMARK 465 GLY A 690 REMARK 465 GLN A 691 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 10 CG CD CE NZ REMARK 470 GLU A 95 CG CD OE1 OE2 REMARK 470 LYS A 138 CG CD CE NZ REMARK 470 GLU A 214 CG CD OE1 OE2 REMARK 470 GLU A 225 CG CD OE1 OE2 REMARK 470 HIS A 573 CG ND1 CD2 CE1 NE2 REMARK 470 PHE A 672 CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 303 C - N - CA ANGL. DEV. = 9.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 19 112.77 -160.33 REMARK 500 HIS A 20 137.52 -7.79 REMARK 500 ASP A 22 -15.27 67.32 REMARK 500 LYS A 75 59.27 33.63 REMARK 500 PRO A 85 142.77 -39.70 REMARK 500 PHE A 90 24.75 -71.46 REMARK 500 THR A 91 -40.80 -10.58 REMARK 500 ALA A 144 109.71 -59.65 REMARK 500 VAL A 163 95.58 -67.78 REMARK 500 ARG A 170 -76.97 -116.98 REMARK 500 GLU A 171 -93.96 -116.56 REMARK 500 PHE A 174 103.34 -50.50 REMARK 500 GLU A 241 -48.82 -24.59 REMARK 500 PRO A 283 -20.54 -37.12 REMARK 500 THR A 293 164.09 -48.61 REMARK 500 PRO A 303 66.66 -68.42 REMARK 500 LYS A 315 134.68 -173.14 REMARK 500 GLU A 368 136.13 167.03 REMARK 500 LEU A 380 91.78 54.07 REMARK 500 GLU A 382 64.42 -104.60 REMARK 500 GLU A 392 -53.66 65.62 REMARK 500 SER A 401 -171.97 -67.60 REMARK 500 ILE A 402 -80.83 -86.06 REMARK 500 GLU A 403 113.66 -24.26 REMARK 500 PRO A 407 88.21 -65.13 REMARK 500 PRO A 415 -140.55 -67.41 REMARK 500 LYS A 416 -91.00 -89.99 REMARK 500 LYS A 418 1.51 48.93 REMARK 500 ALA A 419 -79.52 -82.19 REMARK 500 GLU A 434 12.28 -150.74 REMARK 500 THR A 437 52.19 -96.77 REMARK 500 GLU A 445 -56.11 -141.08 REMARK 500 GLN A 448 173.78 -46.49 REMARK 500 ARG A 468 -80.89 -63.17 REMARK 500 THR A 501 109.88 40.76 REMARK 500 VAL A 530 -104.00 -63.45 REMARK 500 ILE A 556 24.19 -146.72 REMARK 500 GLU A 574 -39.41 80.74 REMARK 500 ARG A 627 38.63 -93.29 REMARK 500 ASP A 674 -52.78 -125.20 REMARK 500 GLU A 685 74.38 -60.35 REMARK 500 LYS A 686 -49.95 168.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 19 HIS A 20 145.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 701 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 26 OG1 REMARK 620 2 GDP A 702 O3B 68.1 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP A 702 DBREF 4M1K A 1 691 UNP P13551 EFG_THETH 1 691 SEQADV 4M1K LEU A 500 UNP P13551 GLN 500 ENGINEERED MUTATION SEQRES 1 A 691 MET ALA VAL LYS VAL GLU TYR ASP LEU LYS ARG LEU ARG SEQRES 2 A 691 ASN ILE GLY ILE ALA ALA HIS ILE ASP ALA GLY LYS THR SEQRES 3 A 691 THR THR THR GLU ARG ILE LEU TYR TYR THR GLY ARG ILE SEQRES 4 A 691 HIS LYS ILE GLY GLU VAL HIS GLU GLY ALA ALA THR MET SEQRES 5 A 691 ASP PHE MET GLU GLN GLU ARG GLU ARG GLY ILE THR ILE SEQRES 6 A 691 THR ALA ALA VAL THR THR CYS PHE TRP LYS ASP HIS ARG SEQRES 7 A 691 ILE ASN ILE ILE ASP THR PRO GLY HIS VAL ASP PHE THR SEQRES 8 A 691 ILE GLU VAL GLU ARG SER MET ARG VAL LEU ASP GLY ALA SEQRES 9 A 691 ILE VAL VAL PHE ASP SER SER GLN GLY VAL GLU PRO GLN SEQRES 10 A 691 SER GLU THR VAL TRP ARG GLN ALA GLU LYS TYR LYS VAL SEQRES 11 A 691 PRO ARG ILE ALA PHE ALA ASN LYS MET ASP LYS THR GLY SEQRES 12 A 691 ALA ASP LEU TRP LEU VAL ILE ARG THR MET GLN GLU ARG SEQRES 13 A 691 LEU GLY ALA ARG PRO VAL VAL MET GLN LEU PRO ILE GLY SEQRES 14 A 691 ARG GLU ASP THR PHE SER GLY ILE ILE ASP VAL LEU ARG SEQRES 15 A 691 MET LYS ALA TYR THR TYR GLY ASN ASP LEU GLY THR ASP SEQRES 16 A 691 ILE ARG GLU ILE PRO ILE PRO GLU GLU TYR LEU ASP GLN SEQRES 17 A 691 ALA ARG GLU TYR HIS GLU LYS LEU VAL GLU VAL ALA ALA SEQRES 18 A 691 ASP PHE ASP GLU ASN ILE MET LEU LYS TYR LEU GLU GLY SEQRES 19 A 691 GLU GLU PRO THR GLU GLU GLU LEU VAL ALA ALA ILE ARG SEQRES 20 A 691 LYS GLY THR ILE ASP LEU LYS ILE THR PRO VAL PHE LEU SEQRES 21 A 691 GLY SER ALA LEU LYS ASN LYS GLY VAL GLN LEU LEU LEU SEQRES 22 A 691 ASP ALA VAL VAL ASP TYR LEU PRO SER PRO LEU ASP ILE SEQRES 23 A 691 PRO PRO ILE LYS GLY THR THR PRO GLU GLY GLU VAL VAL SEQRES 24 A 691 GLU ILE HIS PRO ASP PRO ASN GLY PRO LEU ALA ALA LEU SEQRES 25 A 691 ALA PHE LYS ILE MET ALA ASP PRO TYR VAL GLY ARG LEU SEQRES 26 A 691 THR PHE ILE ARG VAL TYR SER GLY THR LEU THR SER GLY SEQRES 27 A 691 SER TYR VAL TYR ASN THR THR LYS GLY ARG LYS GLU ARG SEQRES 28 A 691 VAL ALA ARG LEU LEU ARG MET HIS ALA ASN HIS ARG GLU SEQRES 29 A 691 GLU VAL GLU GLU LEU LYS ALA GLY ASP LEU GLY ALA VAL SEQRES 30 A 691 VAL GLY LEU LYS GLU THR ILE THR GLY ASP THR LEU VAL SEQRES 31 A 691 GLY GLU ASP ALA PRO ARG VAL ILE LEU GLU SER ILE GLU SEQRES 32 A 691 VAL PRO GLU PRO VAL ILE ASP VAL ALA ILE GLU PRO LYS SEQRES 33 A 691 THR LYS ALA ASP GLN GLU LYS LEU SER GLN ALA LEU ALA SEQRES 34 A 691 ARG LEU ALA GLU GLU ASP PRO THR PHE ARG VAL SER THR SEQRES 35 A 691 HIS PRO GLU THR GLY GLN THR ILE ILE SER GLY MET GLY SEQRES 36 A 691 GLU LEU HIS LEU GLU ILE ILE VAL ASP ARG LEU LYS ARG SEQRES 37 A 691 GLU PHE LYS VAL ASP ALA ASN VAL GLY LYS PRO GLN VAL SEQRES 38 A 691 ALA TYR ARG GLU THR ILE THR LYS PRO VAL ASP VAL GLU SEQRES 39 A 691 GLY LYS PHE ILE ARG LEU THR GLY GLY ARG GLY GLN TYR SEQRES 40 A 691 GLY HIS VAL LYS ILE LYS VAL GLU PRO LEU PRO ARG GLY SEQRES 41 A 691 SER GLY PHE GLU PHE VAL ASN ALA ILE VAL GLY GLY VAL SEQRES 42 A 691 ILE PRO LYS GLU TYR ILE PRO ALA VAL GLN LYS GLY ILE SEQRES 43 A 691 GLU GLU ALA MET GLN SER GLY PRO LEU ILE GLY PHE PRO SEQRES 44 A 691 VAL VAL ASP ILE LYS VAL THR LEU TYR ASP GLY SER TYR SEQRES 45 A 691 HIS GLU VAL ASP SER SER GLU MET ALA PHE LYS ILE ALA SEQRES 46 A 691 GLY SER MET ALA ILE LYS GLU ALA VAL GLN LYS GLY ASP SEQRES 47 A 691 PRO VAL ILE LEU GLU PRO ILE MET ARG VAL GLU VAL THR SEQRES 48 A 691 THR PRO GLU GLU TYR MET GLY ASP VAL ILE GLY ASP LEU SEQRES 49 A 691 ASN ALA ARG ARG GLY GLN ILE LEU GLY MET GLU PRO ARG SEQRES 50 A 691 GLY ASN ALA GLN VAL ILE ARG ALA PHE VAL PRO LEU ALA SEQRES 51 A 691 GLU MET PHE GLY TYR ALA THR ASP LEU ARG SER LYS THR SEQRES 52 A 691 GLN GLY ARG GLY SER PHE VAL MET PHE PHE ASP HIS TYR SEQRES 53 A 691 GLN GLU VAL PRO LYS GLN VAL GLN GLU LYS LEU ILE LYS SEQRES 54 A 691 GLY GLN HET MG A 701 1 HET GDP A 702 28 HETNAM MG MAGNESIUM ION HETNAM GDP GUANOSINE-5'-DIPHOSPHATE FORMUL 2 MG MG 2+ FORMUL 3 GDP C10 H15 N5 O11 P2 HELIX 1 1 ASP A 8 LYS A 10 5 3 HELIX 2 2 GLY A 24 THR A 36 1 13 HELIX 3 3 THR A 91 ARG A 99 1 9 HELIX 4 4 GLU A 115 TYR A 128 1 14 HELIX 5 5 ASP A 145 GLY A 158 1 14 HELIX 6 6 PRO A 202 GLU A 204 5 3 HELIX 7 7 TYR A 205 ALA A 221 1 17 HELIX 8 8 ASP A 224 GLU A 233 1 10 HELIX 9 9 THR A 238 ASP A 252 1 15 HELIX 10 10 GLY A 268 LEU A 280 1 13 HELIX 11 11 ASP A 420 ALA A 432 1 13 HELIX 12 12 GLY A 455 ARG A 468 1 14 HELIX 13 13 TYR A 538 MET A 550 1 13 HELIX 14 14 SER A 578 GLY A 597 1 20 HELIX 15 15 TYR A 616 ARG A 627 1 12 HELIX 16 16 ALA A 650 MET A 652 5 3 HELIX 17 17 GLY A 654 SER A 661 1 8 HELIX 18 18 PRO A 680 ILE A 688 1 9 SHEET 1 A 7 VAL A 69 TRP A 74 0 SHEET 2 A 7 HIS A 77 ILE A 82 -1 O ILE A 81 N THR A 70 SHEET 3 A 7 LEU A 12 ALA A 18 1 N ILE A 15 O ILE A 82 SHEET 4 A 7 GLY A 103 ASP A 109 1 O VAL A 107 N ALA A 18 SHEET 5 A 7 ARG A 132 ASN A 137 1 O PHE A 135 N PHE A 108 SHEET 6 A 7 THR A 256 LEU A 260 1 O PHE A 259 N ALA A 136 SHEET 7 A 7 PRO A 161 VAL A 163 1 N VAL A 162 O VAL A 258 SHEET 1 B 4 GLN A 165 ILE A 168 0 SHEET 2 B 4 GLY A 176 ASP A 179 -1 O ILE A 178 N LEU A 166 SHEET 3 B 4 LYS A 184 TYR A 188 -1 O LYS A 184 N ASP A 179 SHEET 4 B 4 ILE A 196 ILE A 199 -1 O ARG A 197 N THR A 187 SHEET 1 C 2 LYS A 290 THR A 292 0 SHEET 2 C 2 VAL A 298 GLU A 300 -1 O VAL A 299 N GLY A 291 SHEET 1 D 6 ARG A 348 ARG A 351 0 SHEET 2 D 6 TYR A 340 ASN A 343 -1 N VAL A 341 O GLU A 350 SHEET 3 D 6 THR A 388 VAL A 390 -1 O VAL A 390 N TYR A 342 SHEET 4 D 6 ALA A 310 ASP A 319 -1 N ALA A 311 O LEU A 389 SHEET 5 D 6 GLY A 323 SER A 332 -1 O LEU A 325 N MET A 317 SHEET 6 D 6 LEU A 374 VAL A 377 -1 O GLY A 375 N ILE A 328 SHEET 1 E 2 LEU A 335 THR A 336 0 SHEET 2 E 2 GLU A 368 LEU A 369 -1 O LEU A 369 N LEU A 335 SHEET 1 F 2 LEU A 355 MET A 358 0 SHEET 2 F 2 ARG A 363 VAL A 366 -1 O GLU A 364 N ARG A 357 SHEET 1 G 4 ARG A 439 THR A 442 0 SHEET 2 G 4 THR A 449 GLY A 453 -1 O ILE A 450 N SER A 441 SHEET 3 G 4 ILE A 409 GLU A 414 -1 N VAL A 411 O ILE A 451 SHEET 4 G 4 ASN A 475 VAL A 476 -1 O ASN A 475 N GLU A 414 SHEET 1 H 4 ARG A 439 THR A 442 0 SHEET 2 H 4 THR A 449 GLY A 453 -1 O ILE A 450 N SER A 441 SHEET 3 H 4 ILE A 409 GLU A 414 -1 N VAL A 411 O ILE A 451 SHEET 4 H 4 GLN A 480 VAL A 481 -1 O GLN A 480 N ASP A 410 SHEET 1 I 4 ARG A 484 THR A 486 0 SHEET 2 I 4 VAL A 600 PRO A 613 -1 O LEU A 602 N ARG A 484 SHEET 3 I 4 ALA A 640 PRO A 648 -1 O ILE A 643 N VAL A 610 SHEET 4 I 4 GLN A 630 GLU A 635 -1 N GLN A 630 O PHE A 646 SHEET 1 J 3 ARG A 484 THR A 486 0 SHEET 2 J 3 VAL A 600 PRO A 613 -1 O LEU A 602 N ARG A 484 SHEET 3 J 3 SER A 668 GLU A 678 -1 O PHE A 672 N ARG A 607 SHEET 1 K 4 VAL A 491 ARG A 499 0 SHEET 2 K 4 GLN A 506 PRO A 516 -1 O VAL A 514 N VAL A 491 SHEET 3 K 4 ILE A 563 SER A 571 -1 O LYS A 564 N GLU A 515 SHEET 4 K 4 PHE A 523 ASN A 527 1 N VAL A 526 O VAL A 565 LINK OG1 THR A 26 MG MG A 701 1555 1555 2.59 LINK MG MG A 701 O3B GDP A 702 1555 1555 2.85 CISPEP 1 GLY A 502 GLY A 503 0 4.11 SITE 1 AC1 3 THR A 26 GLU A 295 GDP A 702 SITE 1 AC2 16 HIS A 20 ILE A 21 ASP A 22 ALA A 23 SITE 2 AC2 16 GLY A 24 LYS A 25 THR A 26 THR A 27 SITE 3 AC2 16 ASN A 137 LYS A 138 ASP A 140 SER A 262 SITE 4 AC2 16 ALA A 263 LEU A 264 PRO A 294 MG A 701 CRYST1 75.989 86.767 123.118 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013160 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011525 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008122 0.00000