HEADER PROTEIN BINDING 04-AUG-13 4M1V TITLE CRYSTAL STRUCTURE OF THE ANCESTRAL SOLUBLE VARIANT OF THE HUMAN TITLE 2 PHOSPHATE BINDING PROTEIN (HPBP) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHATE-BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HPBP; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: UNIDENTIFIED PROKARYOTIC ORGANISM; SOURCE 3 ORGANISM_TAXID: 2725; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS PHOSPHATE-BINDING PROTEIN, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR D.GONZALEZ,J.HIBLOT,N.DARBINIAN,J.S.MILLER,G.GOTTHARD,S.AMINI, AUTHOR 2 E.CHABRIERE,M.ELIAS REVDAT 3 20-SEP-23 4M1V 1 REMARK SEQADV SSBOND REVDAT 2 26-MAR-14 4M1V 1 JRNL REVDAT 1 01-JAN-14 4M1V 0 JRNL AUTH D.GONZALEZ,J.HIBLOT,N.DARBINIAN,J.C.MILLER,G.GOTTHARD, JRNL AUTH 2 S.AMINI,E.CHABRIERE,M.ELIAS JRNL TITL ANCESTRAL MUTATIONS AS A TOOL FOR SOLUBILIZING PROTEINS: THE JRNL TITL 2 CASE OF A HYDROPHOBIC PHOSPHATE-BINDING PROTEIN. JRNL REF FEBS OPEN BIO V. 4 121 2014 JRNL REFN ESSN 2211-5463 JRNL PMID 24490136 JRNL DOI 10.1016/J.FOB.2013.12.006 REMARK 2 REMARK 2 RESOLUTION. 1.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.10 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 78327 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.109 REMARK 3 R VALUE (WORKING SET) : 0.107 REMARK 3 FREE R VALUE : 0.143 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4123 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.33 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5726 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.50 REMARK 3 BIN R VALUE (WORKING SET) : 0.1960 REMARK 3 BIN FREE R VALUE SET COUNT : 301 REMARK 3 BIN FREE R VALUE : 0.2520 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2748 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 39 REMARK 3 SOLVENT ATOMS : 650 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.35000 REMARK 3 B22 (A**2) : -0.24000 REMARK 3 B33 (A**2) : -0.17000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.34000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.039 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.040 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.026 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.368 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.986 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.975 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2936 ; 0.008 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2758 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4014 ; 1.381 ; 1.951 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6351 ; 1.122 ; 3.001 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 401 ; 6.069 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 107 ;36.279 ;24.673 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 424 ;11.300 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 11 ;15.124 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 467 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3427 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 652 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1558 ; 2.414 ; 1.037 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1556 ; 2.393 ; 1.032 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1957 ; 2.741 ; 1.563 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 1958 ; 2.322 ; 1.536 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1376 ; 3.770 ; 1.232 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 1375 ; 3.967 ; 1.207 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 2049 ; 4.692 ; 1.729 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 4009 ; 8.674 ;12.399 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 4010 ; 8.673 ;12.402 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 5690 ; 8.745 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 123 ;72.684 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 6159 ;18.957 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4M1V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-AUG-13. REMARK 100 THE DEPOSITION ID IS D_1000081360. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JAN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SOLEIL REMARK 200 BEAMLINE : PROXIMA 1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97655 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 81625 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.300 REMARK 200 RESOLUTION RANGE LOW (A) : 99.910 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.04100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 21.3600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.40 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.23 REMARK 200 R MERGE FOR SHELL (I) : 0.27500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.650 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2V3Q REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: THE PROTEIN WAS CONCENTRATED AT REMARK 280 4MG/ML. THE CONDITIONS ARE 0.2M SODIUM ACETATE, 0.1M SODIUM REMARK 280 CACODYLATE, 25% PEG 8000, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K, PH 6.5 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 62.52000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 35.99500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 62.52000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 35.99500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1075 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1078 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1123 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1149 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 622 O HOH A 1054 1.97 REMARK 500 O HOH A 1037 O HOH A 1039 2.05 REMARK 500 OD1 ASN A 54 CB LEU A 377 2.07 REMARK 500 O ALA A 264 O HOH A 1110 2.07 REMARK 500 O HOH A 1102 O HOH A 1136 2.10 REMARK 500 O HOH A 892 O HOH A 1132 2.11 REMARK 500 O HOH A 726 O HOH A 1000 2.11 REMARK 500 O HOH A 804 O HOH A 1041 2.14 REMARK 500 O HOH A 822 O HOH A 1052 2.14 REMARK 500 O HOH A 1065 O HOH A 1071 2.15 REMARK 500 O HOH A 753 O HOH A 871 2.16 REMARK 500 O HOH A 640 O HOH A 737 2.16 REMARK 500 C2 EDO A 403 O HOH A 1109 2.18 REMARK 500 O HOH A 782 O HOH A 870 2.18 REMARK 500 O HOH A 835 O HOH A 1112 2.19 REMARK 500 OD1 ASP A 290 O HOH A 809 2.19 REMARK 500 O HOH A 758 O HOH A 1031 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1125 O HOH A 1125 2555 1.83 REMARK 500 O HOH A 1063 O HOH A 1144 4445 1.86 REMARK 500 O HOH A 1099 O HOH A 1099 2555 2.10 REMARK 500 O HOH A 660 O HOH A 1137 4455 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 99 110.23 -160.94 REMARK 500 LYS A 228 -30.19 -134.89 REMARK 500 LYS A 228 -30.13 -134.97 REMARK 500 ASN A 328 58.55 36.27 REMARK 500 ASN A 329 -165.81 -114.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 407 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 408 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 409 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2V3Q RELATED DB: PDB REMARK 900 THE WILD-TYPE PROTEIN STRUCTURE DBREF 4M1V A 1 376 UNP P85173 PHBP_UNKP 1 376 SEQADV 4M1V ALA A 0 UNP P85173 EXPRESSION TAG SEQADV 4M1V GLN A 15 UNP P85173 LEU 15 ENGINEERED MUTATION SEQADV 4M1V ALA A 37 UNP P85173 ILE 37 ENGINEERED MUTATION SEQADV 4M1V SER A 70 UNP P85173 ALA 70 ENGINEERED MUTATION SEQADV 4M1V SER A 74 UNP P85173 ALA 74 ENGINEERED MUTATION SEQADV 4M1V THR A 79 UNP P85173 GLY 79 ENGINEERED MUTATION SEQADV 4M1V THR A 102 UNP P85173 ALA 102 ENGINEERED MUTATION SEQADV 4M1V THR A 121 UNP P85173 ALA 121 ENGINEERED MUTATION SEQADV 4M1V SER A 129 UNP P85173 ALA 129 ENGINEERED MUTATION SEQADV 4M1V SER A 141 UNP P85173 ALA 141 ENGINEERED MUTATION SEQADV 4M1V THR A 162 UNP P85173 PRO 162 ENGINEERED MUTATION SEQADV 4M1V GLY A 177 UNP P85173 LEU 177 ENGINEERED MUTATION SEQADV 4M1V THR A 182 UNP P85173 LEU 182 ENGINEERED MUTATION SEQADV 4M1V GLN A 192 UNP P85173 ASP 192 ENGINEERED MUTATION SEQADV 4M1V THR A 196 UNP P85173 ALA 196 ENGINEERED MUTATION SEQADV 4M1V MET A 211 UNP P85173 ILE 211 ENGINEERED MUTATION SEQADV 4M1V ALA A 237 UNP P85173 VAL 237 ENGINEERED MUTATION SEQADV 4M1V VAL A 261 UNP P85173 LEU 261 ENGINEERED MUTATION SEQADV 4M1V THR A 268 UNP P85173 GLY 268 ENGINEERED MUTATION SEQADV 4M1V ALA A 283 UNP P85173 GLY 283 ENGINEERED MUTATION SEQADV 4M1V THR A 314 UNP P85173 GLY 314 ENGINEERED MUTATION SEQADV 4M1V ASN A 328 UNP P85173 ALA 328 ENGINEERED MUTATION SEQADV 4M1V ILE A 350 UNP P85173 VAL 350 ENGINEERED MUTATION SEQADV 4M1V LEU A 377 UNP P85173 EXPRESSION TAG SEQRES 1 A 378 ALA ASP ILE ASN GLY GLY GLY ALA THR LEU PRO GLN LYS SEQRES 2 A 378 LEU TYR GLN THR PRO ASP VAL LEU THR ALA GLY PHE ALA SEQRES 3 A 378 PRO TYR ILE GLY VAL GLY SER GLY LYS GLY LYS ALA ALA SEQRES 4 A 378 PHE LEU GLU ASN LYS TYR ASN GLN PHE GLY THR ASP THR SEQRES 5 A 378 THR LYS ASN VAL HIS TRP ALA GLY SER ASP SER LYS LEU SEQRES 6 A 378 THR ALA THR GLU LEU SER THR TYR ALA SER ASP LYS GLU SEQRES 7 A 378 PRO THR TRP GLY LYS LEU ILE GLN VAL PRO SER VAL ALA SEQRES 8 A 378 THR SER VAL ALA ILE PRO PHE ARG LYS ALA GLY THR ASN SEQRES 9 A 378 ALA VAL ASP LEU SER VAL LYS GLU LEU CYS GLY VAL PHE SEQRES 10 A 378 SER GLY ARG ILE THR ASP TRP SER GLY ILE THR GLY SER SEQRES 11 A 378 GLY ARG SER GLY PRO ILE GLN VAL VAL TYR ARG SER GLU SEQRES 12 A 378 SER SER GLY THR THR GLU LEU PHE THR ARG PHE LEU ASN SEQRES 13 A 378 ALA LYS CYS THR THR GLU THR GLY THR PHE ALA VAL THR SEQRES 14 A 378 THR THR PHE ALA ASN SER TYR SER GLY GLY LEU THR PRO SEQRES 15 A 378 THR ALA GLY ALA VAL ALA ALA THR GLY SER GLN GLY VAL SEQRES 16 A 378 MET THR ALA LEU ASN ASP THR THR VAL ALA GLU GLY ARG SEQRES 17 A 378 ILE THR TYR MET SER PRO ASP PHE ALA ALA PRO THR LEU SEQRES 18 A 378 ALA GLY LEU ASP ASP ALA THR LYS VAL ALA ARG VAL GLY SEQRES 19 A 378 LYS GLY VAL ALA ASN GLY VAL ALA VAL GLU GLY LYS SER SEQRES 20 A 378 PRO ALA ALA ALA ASN VAL SER ALA ALA ILE SER VAL VAL SEQRES 21 A 378 PRO VAL PRO ALA ALA ALA ASP ARG THR ASN PRO ASP VAL SEQRES 22 A 378 TRP VAL PRO VAL PHE GLY ALA THR THR GLY ALA GLY VAL SEQRES 23 A 378 VAL ALA TYR PRO ASP SER GLY TYR PRO ILE LEU GLY PHE SEQRES 24 A 378 THR ASN LEU ILE PHE SER GLN CYS TYR ALA ASN ALA THR SEQRES 25 A 378 GLN THR THR GLN VAL ARG ASP PHE PHE THR LYS HIS TYR SEQRES 26 A 378 GLY THR SER ASN ASN ASN ASP ALA ALA ILE GLU ALA ASN SEQRES 27 A 378 ALA PHE VAL PRO LEU PRO SER ASN TRP LYS ALA ALA ILE SEQRES 28 A 378 ARG ALA SER PHE LEU THR ALA SER ASN ALA LEU SER ILE SEQRES 29 A 378 GLY ASN THR ASN VAL CYS ASN GLY LYS GLY ARG PRO GLN SEQRES 30 A 378 LEU HET PO4 A 401 5 HET ACT A 402 4 HET EDO A 403 4 HET EDO A 404 4 HET EDO A 405 4 HET EDO A 406 4 HET GOL A 407 6 HET EDO A 408 4 HET EDO A 409 4 HETNAM PO4 PHOSPHATE ION HETNAM ACT ACETATE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM GOL GLYCEROL HETSYN EDO ETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 PO4 O4 P 3- FORMUL 3 ACT C2 H3 O2 1- FORMUL 4 EDO 6(C2 H6 O2) FORMUL 8 GOL C3 H8 O3 FORMUL 11 HOH *650(H2 O) HELIX 1 1 PRO A 10 GLN A 15 1 6 HELIX 2 2 GLY A 31 ASN A 42 1 12 HELIX 3 3 LYS A 43 PHE A 47 5 5 HELIX 4 4 THR A 65 LYS A 76 1 12 HELIX 5 5 LYS A 76 GLY A 81 1 6 HELIX 6 6 SER A 108 SER A 117 1 10 HELIX 7 7 ASP A 122 ILE A 126 5 5 HELIX 8 8 SER A 144 CYS A 158 1 15 HELIX 9 9 THR A 170 SER A 174 5 5 HELIX 10 10 THR A 180 GLY A 184 5 5 HELIX 11 11 THR A 189 ASP A 200 1 12 HELIX 12 12 THR A 219 ASP A 225 5 7 HELIX 13 13 ALA A 248 ASN A 251 5 4 HELIX 14 14 VAL A 252 VAL A 258 1 7 HELIX 15 15 ALA A 263 ARG A 267 5 5 HELIX 16 16 ASN A 269 VAL A 274 5 6 HELIX 17 17 ASN A 309 TYR A 324 1 16 HELIX 18 18 ASN A 330 ASN A 337 1 8 HELIX 19 19 PRO A 343 LEU A 355 1 13 SHEET 1 A 5 ILE A 28 GLY A 29 0 SHEET 2 A 5 GLY A 4 GLY A 6 1 N GLY A 6 O ILE A 28 SHEET 3 A 5 TRP A 57 SER A 60 1 O GLY A 59 N GLY A 5 SHEET 4 A 5 LEU A 296 SER A 304 -1 O ASN A 300 N SER A 60 SHEET 5 A 5 LEU A 83 SER A 92 -1 N SER A 88 O THR A 299 SHEET 1 B 2 ASP A 106 LEU A 107 0 SHEET 2 B 2 ARG A 231 VAL A 232 1 O ARG A 231 N LEU A 107 SHEET 1 C 3 VAL A 186 ALA A 188 0 SHEET 2 C 3 GLN A 136 ARG A 140 1 N VAL A 137 O VAL A 186 SHEET 3 C 3 ARG A 207 ILE A 208 1 O ILE A 208 N VAL A 138 SHEET 1 D 2 GLY A 235 ALA A 237 0 SHEET 2 D 2 VAL A 240 VAL A 242 -1 O VAL A 240 N ALA A 237 SHEET 1 E 2 VAL A 276 GLY A 278 0 SHEET 2 E 2 VAL A 285 ALA A 287 1 O VAL A 286 N VAL A 276 SSBOND 1 CYS A 113 CYS A 158 1555 1555 2.02 SSBOND 2 CYS A 306 CYS A 369 1555 1555 2.10 SITE 1 AC1 10 ALA A 7 THR A 8 LEU A 9 GLY A 31 SITE 2 AC1 10 SER A 32 ASP A 61 ARG A 140 SER A 144 SITE 3 AC1 10 GLY A 145 THR A 146 SITE 1 AC2 8 LYS A 110 LYS A 157 THR A 159 THR A 160 SITE 2 AC2 8 HOH A 521 HOH A1045 HOH A1105 HOH A1141 SITE 1 AC3 8 ASN A 199 ASP A 200 THR A 201 ALA A 348 SITE 2 AC3 8 ARG A 351 HOH A 514 HOH A 566 HOH A1109 SITE 1 AC4 5 THR A 168 THR A 169 THR A 170 HOH A 627 SITE 2 AC4 5 HOH A 704 SITE 1 AC5 9 MET A 195 ASN A 199 PRO A 218 GOL A 407 SITE 2 AC5 9 HOH A 527 HOH A 641 HOH A 823 HOH A 835 SITE 3 AC5 9 HOH A1112 SITE 1 AC6 4 LYS A 76 THR A 79 TRP A 80 HOH A 815 SITE 1 AC7 9 PHE A 97 ARG A 98 LEU A 198 ASN A 199 SITE 2 AC7 9 LYS A 228 EDO A 405 HOH A 527 HOH A 666 SITE 3 AC7 9 HOH A 837 SITE 1 AC8 7 LYS A 245 ASP A 290 SER A 291 GLY A 292 SITE 2 AC8 7 HOH A 598 HOH A 846 HOH A1135 SITE 1 AC9 6 ALA A 255 VAL A 258 VAL A 286 ALA A 287 SITE 2 AC9 6 PRO A 289 HOH A 970 CRYST1 125.040 71.990 38.980 90.00 103.12 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007997 0.000000 0.001864 0.00000 SCALE2 0.000000 0.013891 0.000000 0.00000 SCALE3 0.000000 0.000000 0.026342 0.00000